Citrus Sinensis ID: 015301
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | 2.2.26 [Sep-21-2011] | |||||||
| O24467 | 475 | LEC14B homolog OS=Prunus | N/A | no | 0.977 | 0.842 | 0.763 | 0.0 | |
| Q40153 | 473 | LEC14B protein OS=Lithosp | N/A | no | 0.958 | 0.828 | 0.692 | 1e-159 | |
| Q91VU6 | 549 | DDB1- and CUL4-associated | yes | no | 0.909 | 0.677 | 0.411 | 7e-80 | |
| Q8TEB1 | 546 | DDB1- and CUL4-associated | yes | no | 0.909 | 0.681 | 0.411 | 8e-80 | |
| Q5R7H5 | 546 | DDB1- and CUL4-associated | yes | no | 0.909 | 0.681 | 0.411 | 1e-79 | |
| Q5E9I8 | 546 | DDB1- and CUL4-associated | yes | no | 0.909 | 0.681 | 0.408 | 1e-79 | |
| Q5M9G8 | 549 | DDB1- and CUL4-associated | yes | no | 0.909 | 0.677 | 0.411 | 3e-79 | |
| P90794 | 571 | DDB1- and CUL4-associated | yes | no | 0.907 | 0.649 | 0.360 | 3e-58 | |
| A8XEN7 | 554 | DDB1- and CUL4-associated | N/A | no | 0.904 | 0.667 | 0.334 | 4e-54 | |
| Q9V3J8 | 361 | Protein will die slowly O | no | no | 0.667 | 0.756 | 0.251 | 3e-17 |
| >sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/402 (76%), Positives = 342/402 (85%), Gaps = 2/402 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE N+SGRGRFS+AD CHVLSRYLP+NGPW VD S Y SQFSNDG FFVA Q
Sbjct: 71 MLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGLFFVAGFQ 130
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
+I++YNVDK WK+QKDI TK+LRWTITDTSLSPDQR+LVYAS+ IVNIV+VGSS E
Sbjct: 131 GGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVNVGSSMTE 190
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
SLANVTEIH+GLDFS GDEDEFGIFSV+FSTDG+ELVAA D IYVYDLQANK +LRI
Sbjct: 191 SLANVTEIHEGLDFSVGGDEDEFGIFSVRFSTDGRELVAASRDASIYVYDLQANKVNLRI 250
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH SDVNTVCFADETGHLI+SGSDD+LCKVWDRRCF KG+ GVLMGHLEG+TFIDSR
Sbjct: 251 PAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRCFNHKGQPAGVLMGHLEGVTFIDSR 310
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRYFISNGKDQTT+LWDIRKMSS + RLRD+DWDYRWMEYP++A+ LKHP+DQSL
Sbjct: 311 GDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWMEYPAHAKTLKHPNDQSL 370
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATY+GH VLRTLIRCY SP YST QKYIYTGSSD+ VYIYDLV+GAQVA+L+ H PVRD
Sbjct: 371 ATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRD 430
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPKRRTVRARR 402
C WHP+YPML+SSSWD I RWE PG + P +R RARR
Sbjct: 431 CSWHPLYPMLVSSSWDGTIARWEFPGDDQVPTLER--PRARR 470
|
Prunus armeniaca (taxid: 36596) |
| >sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/393 (69%), Positives = 315/393 (80%), Gaps = 1/393 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE N SGRGRFS+AD CHV+SR+LPVN P VD M SRVY SQFS DGS F+A Q
Sbjct: 72 MLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTSRVYLSQFSTDGSLFIAGFQ 131
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
+I++YNVDK WK+Q DI K +RWTITD SLSPDQ+FL YAS+ I +IV GS+A E
Sbjct: 132 GCHIRIYNVDKGWKVQNDIIAKCVRWTITDASLSPDQKFLAYASLTPIAHIVKFGSAATE 191
Query: 121 SLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
S ANVT+IH GLDFS++ D FG+FS+KFSTDG+E+VA SD I VYDL+A++ SLR
Sbjct: 192 SHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSDESICVYDLEADRLSLR 251
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
I AH+SDVN+VCFADE+GHLI+SGSDD+LCKVWDRRCF +KG+ G+LMGHLEGITFIDS
Sbjct: 252 ISAHESDVNSVCFADESGHLIYSGSDDNLCKVWDRRCFNAKGKPAGILMGHLEGITFIDS 311
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299
R DGRYFISNGKDQT KLWDIRKMSSN + R+ +WDYRWMEYP AR LKHP D S
Sbjct: 312 RGDGRYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWMEYPQEARDLKHPSDLS 371
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359
ATYKGHSVL TLIRCYFSP+YST QKYIYTGS D +VYIYDLV+G QV+ L +H A VR
Sbjct: 372 GATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVR 431
Query: 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 392
DC WHP YPML+SSS+D IV+WE G EAP+
Sbjct: 432 DCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPV 464
|
Lithospermum erythrorhizon (taxid: 34254) |
| >sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 228/389 (58%), Gaps = 17/389 (4%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ + K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSRL--RDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SRL +WDYRW + P A ++LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Mus musculus (taxid: 10090) |
| >sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 228/389 (58%), Gaps = 17/389 (4%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Homo sapiens (taxid: 9606) |
| >sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 228/389 (58%), Gaps = 17/389 (4%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Pongo abelii (taxid: 9601) |
| >sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 228/389 (58%), Gaps = 17/389 (4%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE +G FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Bos taurus (taxid: 9913) |
| >sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 228/389 (58%), Gaps = 17/389 (4%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ + K I+ + + W++ D + +PD +Y+S ++I
Sbjct: 193 DQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHIC------- 245
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
S+ + H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 246 -SIYGEGDTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSRL--RDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SRL +WDYRW + P A ++LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD ++ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGSLRLWQ 511
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Rattus norvegicus (taxid: 10116) |
| >sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 218/397 (54%), Gaps = 26/397 (6%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
++ R++ G + VL+ +LP N +VD + ++ + +Q+ +G+ V ASQ
Sbjct: 126 FILNRDLQKRGTSISNPRTVARVLNSHLP-NQKRRVDRVATKSFCTQYIQNGTKIVVASQ 184
Query: 61 ESNIKVY--NVDKNWKIQKDIETKALR-----WTITDTSLSPDQRFLVYASICAIVNIVD 113
+ I+ Y N DK+ K +++ LR W+I DT++S + + Y + V +
Sbjct: 185 DEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTWKDAVFVGK 244
Query: 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL-Q 172
+ + R+ N+T +D + + D +F VKFS +++V S I+V+D+ Q
Sbjct: 245 LDFTERQ---NITWF--PIDLNGEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQ 299
Query: 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN--GVLMGH 230
+ + AH+ DVN+VCFAD +LI+S DD L KVWD+R + S G GV GH
Sbjct: 300 RRRIRTIVNAHEDDVNSVCFADLGSNLIYSAGDDGLVKVWDKRAW-SDGDVEPVGVFAGH 358
Query: 231 LEGITFIDSRRDGRYFISNGKDQTTKLWDIRK---MSSNTTDNSRLRDYDWDYRWMEYPS 287
+G+T +DSR+D RY +SN KDQT K+WD+RK MS + ++ WDYRW P
Sbjct: 359 RDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQSQHWDYRWQPAPP 418
Query: 288 YARRLKHP--HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345
L P D S+ T +GHSVL TL+R FSPE ST ++YIYTG + V +YD++SG
Sbjct: 419 G---LCQPVAGDTSVMTLRGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSG 474
Query: 346 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+L H A VR+C WHP ++SS+WD W
Sbjct: 475 TVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVW 511
|
Involved in regulation of lifespan. Caenorhabditis elegans (taxid: 6239) |
| >sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 216/398 (54%), Gaps = 28/398 (7%)
Query: 2 LVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE 61
++ R+V ++A H+L+ +LP N +VD + ++ + +Q+ +G V +SQ
Sbjct: 104 ILNRDVQRRNGPVMTSASRAHLLNTHLP-NKKRRVDQLRTKNFCAQYIQNGRKMVVSSQG 162
Query: 62 SNIKVYNVDKNWKIQKDIETKALRWTIT--------DTSLSPDQRFLVYASICAIVNIVD 113
+ K+ KI+ + +++ T DT+++ + Y C + V
Sbjct: 163 ERENSFLSTKSGKIEISLPILSMQRTPCGPLQLVDLDTAVNQQGDLISY---CTWKDAVY 219
Query: 114 VGSSARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL- 171
+G +E N+T +D+ + +++ +F V+FS D +++V S+ I+V+D+
Sbjct: 220 IGRMEQEDNQNITWF--PIDWHGEHAVQNQCAVFCVRFSDDSEQIVCGTSEYSIHVFDVE 277
Query: 172 QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVLMG 229
Q + + AH+ DVN+VCFAD +LI+S DD L KVWD+R + S G GV G
Sbjct: 278 QRRRIRTIVNAHEDDVNSVCFADYGSNLIYSAGDDGLVKVWDKRAW-SDGDVIPVGVFAG 336
Query: 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN---TTDNSRLRDYDWDYRWMEYP 286
H +G+T++DSR+D RY +SN KDQT K+WD+RK S + ++ WDYRW P
Sbjct: 337 HRDGVTYVDSRQDERYLLSNSKDQTIKVWDLRKFSCQGGVEATRACVQSQHWDYRWQPAP 396
Query: 287 SYARRLKHP--HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344
L P D S+ T +GHSVL TL+R FSPE +T +++IYTG + + +YD+V+
Sbjct: 397 PG---LCQPVQGDTSVMTLRGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVT 452
Query: 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
G +L H A VR+C WHP ++S+SWD W
Sbjct: 453 GTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVW 490
|
Involved in regulation of lifespan. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 136/342 (39%), Gaps = 69/342 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G V +FS +G + ++S + IK++ + K +K I L I+D + S D
Sbjct: 70 GHTKAVSAVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLG--ISDVAWSSDS 126
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
R LV S + + V E+ G + +F F+ +
Sbjct: 127 RLLV--------------SGSDDKTLKVWELSTGKSLKTLKGHSNY-VFCCNFNPQSNLI 171
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+ D + ++D++ KC +PAH V+ V F + G LI S S D LC++WD
Sbjct: 172 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT--- 227
Query: 218 ISKGRANGVLMGHL-----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
A+G + L ++F+ +G+Y ++ D T KLWD K
Sbjct: 228 -----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------- 272
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332
+ L TY GH + C F+ T K+I +GS
Sbjct: 273 ------------------------GKCLKTYTGH---KNEKYCIFANFSVTGGKWIVSGS 305
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS 374
DN VYI++L S V KL H V HP ++ S++
Sbjct: 306 EDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAA 347
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | ||||||
| 3122313 | 475 | RecName: Full=LEC14B homolog gi|2351587| | 0.977 | 0.842 | 0.763 | 0.0 | |
| 224110522 | 474 | predicted protein [Populus trichocarpa] | 0.960 | 0.829 | 0.779 | 0.0 | |
| 255551583 | 478 | LEC14B protein, putative [Ricinus commun | 0.980 | 0.838 | 0.745 | 1e-178 | |
| 449462296 | 488 | PREDICTED: LEC14B homolog [Cucumis sativ | 0.987 | 0.827 | 0.726 | 1e-176 | |
| 356555581 | 475 | PREDICTED: LEC14B homolog [Glycine max] | 0.980 | 0.844 | 0.739 | 1e-176 | |
| 356549044 | 475 | PREDICTED: LEC14B homolog [Glycine max] | 0.980 | 0.844 | 0.739 | 1e-175 | |
| 449491526 | 488 | PREDICTED: LOW QUALITY PROTEIN: LEC14B h | 0.987 | 0.827 | 0.724 | 1e-175 | |
| 225436851 | 486 | PREDICTED: LEC14B homolog [Vitis vinifer | 0.975 | 0.820 | 0.74 | 1e-175 | |
| 357447537 | 531 | LEC14B-like protein [Medicago truncatula | 0.977 | 0.753 | 0.719 | 1e-174 | |
| 357447539 | 475 | LEC14B-like protein [Medicago truncatula | 0.977 | 0.842 | 0.719 | 1e-173 |
| >gi|3122313|sp|O24467.1|LE14B_PRUAR RecName: Full=LEC14B homolog gi|2351587|gb|AAB88274.1| LEC14B homolog [Prunus armeniaca] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/402 (76%), Positives = 342/402 (85%), Gaps = 2/402 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE N+SGRGRFS+AD CHVLSRYLP+NGPW VD S Y SQFSNDG FFVA Q
Sbjct: 71 MLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTSPAYVSQFSNDGLFFVAGFQ 130
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
+I++YNVDK WK+QKDI TK+LRWTITDTSLSPDQR+LVYAS+ IVNIV+VGSS E
Sbjct: 131 GGHIRIYNVDKGWKVQKDILTKSLRWTITDTSLSPDQRYLVYASMTPIVNIVNVGSSMTE 190
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
SLANVTEIH+GLDFS GDEDEFGIFSV+FSTDG+ELVAA D IYVYDLQANK +LRI
Sbjct: 191 SLANVTEIHEGLDFSVGGDEDEFGIFSVRFSTDGRELVAASRDASIYVYDLQANKVNLRI 250
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH SDVNTVCFADETGHLI+SGSDD+LCKVWDRRCF KG+ GVLMGHLEG+TFIDSR
Sbjct: 251 PAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRCFNHKGQPAGVLMGHLEGVTFIDSR 310
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRYFISNGKDQTT+LWDIRKMSS + RLRD+DWDYRWMEYP++A+ LKHP+DQSL
Sbjct: 311 GDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWMEYPAHAKTLKHPNDQSL 370
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATY+GH VLRTLIRCY SP YST QKYIYTGSSD+ VYIYDLV+GAQVA+L+ H PVRD
Sbjct: 371 ATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRD 430
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPKRRTVRARR 402
C WHP+YPML+SSSWD I RWE PG + P +R RARR
Sbjct: 431 CSWHPLYPMLVSSSWDGTIARWEFPGDDQVPTLER--PRARR 470
|
Source: Prunus armeniaca Species: Prunus armeniaca Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110522|ref|XP_002315545.1| predicted protein [Populus trichocarpa] gi|222864585|gb|EEF01716.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/395 (77%), Positives = 342/395 (86%), Gaps = 2/395 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE NYSGRGRFS+ADS HVLSRYLPV+GP VD +NSR Y SQFS+DG+ FVA Q
Sbjct: 68 MLVGREGNYSGRGRFSSADSRHVLSRYLPVHGPCTVDQLNSRTYVSQFSDDGTLFVAGCQ 127
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++YNVDK WKIQKDI K+LRWTITDT LSP+QR+LVYAS+ +V+IVD+GS+A E
Sbjct: 128 GSHIRIYNVDKGWKIQKDILAKSLRWTITDTCLSPNQRYLVYASLSPVVHIVDIGSAATE 187
Query: 121 SLANVTEIHKGLDFSADGDE-DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
SLANVTEIH GLDFS D D+ DEFGIFSVKFSTDG+ELVAA SDN IY+YDL+AN CSLR
Sbjct: 188 SLANVTEIHNGLDFSVDNDDYDEFGIFSVKFSTDGRELVAASSDNSIYIYDLEANTCSLR 247
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
+PAHKSDVNTVCFADE GHL++SGSDD+LCKVWDRRCFISKG+A GVLMGHLEGITF+DS
Sbjct: 248 VPAHKSDVNTVCFADEAGHLLYSGSDDNLCKVWDRRCFISKGKAAGVLMGHLEGITFVDS 307
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTD-NSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298
R DGRYFISNGKDQTTKLWDIRKMSSN + RLRD DWDYRWMEYP +A+ LKHP DQ
Sbjct: 308 RGDGRYFISNGKDQTTKLWDIRKMSSNAKEYTPRLRDSDWDYRWMEYPPHAKILKHPRDQ 367
Query: 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S+ TY+GHS+LRTLIRCYFSPEYST QKYIYTGSSD SVYIYDLVSGA VA LD H V
Sbjct: 368 SVTTYRGHSILRTLIRCYFSPEYSTGQKYIYTGSSDCSVYIYDLVSGALVATLDHHEGLV 427
Query: 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393
RDC WHP+YPM+ISSSWD I RWE PG GEAP P
Sbjct: 428 RDCSWHPLYPMIISSSWDGVIARWEFPGSGEAPTP 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551583|ref|XP_002516837.1| LEC14B protein, putative [Ricinus communis] gi|223543925|gb|EEF45451.1| LEC14B protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/405 (74%), Positives = 339/405 (83%), Gaps = 4/405 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE NYSGRGRFS+ADSCHVLSR+LPV+GPW+VD M SR Y SQFS+DG+ F+A Q
Sbjct: 70 MLAGREGNYSGRGRFSSADSCHVLSRFLPVHGPWRVDRMKSRAYVSQFSDDGTLFIAGFQ 129
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
+I+VYNVDK WK+QKDI TK+LRWTITDT LSPDQR+LVYAS+ +V+IV+VGSS E
Sbjct: 130 GGHIRVYNVDKGWKVQKDILTKSLRWTITDTCLSPDQRYLVYASMSPVVHIVNVGSSTTE 189
Query: 121 SLANVTEIHKGLDFSADGDE----DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176
SLANVTEIH GLDFS + D+ D FGIFSVKFS DG+ELVA GSD I+VYDL+ NK
Sbjct: 190 SLANVTEIHDGLDFSENQDDNDDYDGFGIFSVKFSMDGRELVAGGSDFAIHVYDLETNKN 249
Query: 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236
LRI AH+SDVNTVCFADETGHLI+SGSDD+ CKVWDRRCFIS+G+A GVL GHLEGITF
Sbjct: 250 ILRIHAHQSDVNTVCFADETGHLIYSGSDDNFCKVWDRRCFISRGQATGVLTGHLEGITF 309
Query: 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296
IDS DGRYFISNGKDQTTKLWDIRKMSSNT+ LRD +WDYRWMEYP AR LKHP
Sbjct: 310 IDSHGDGRYFISNGKDQTTKLWDIRKMSSNTSCIPMLRDPEWDYRWMEYPPNARILKHPD 369
Query: 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356
DQSLATY+GHSVLRTLIRCYFSPEYST QKYIY+GS+D SVYIYDLVSGA+ A+LD+H
Sbjct: 370 DQSLATYRGHSVLRTLIRCYFSPEYSTGQKYIYSGSTDGSVYIYDLVSGAEAARLDYHEG 429
Query: 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPKRRTVRAR 401
PVRDC WHP+YPM++SSSWD I RWE PG GEAP P R R
Sbjct: 430 PVRDCSWHPVYPMIVSSSWDGAIARWEFPGSGEAPTPVTRRSSQR 474
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462296|ref|XP_004148877.1| PREDICTED: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/406 (72%), Positives = 339/406 (83%), Gaps = 2/406 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE NYSG+GRFSA D CHVLSRYLPVNGPW VD M SR Y SQFS+DGS FVA Q
Sbjct: 83 MLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLVDQMTSRAYVSQFSSDGSLFVAGFQ 142
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++YNVD WK+QK+I K+LRWTITDTSLSPDQR+LVYAS+ I++IV+V S+ E
Sbjct: 143 GSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPDQRYLVYASMSPIIHIVNVTSAETE 202
Query: 121 SLANVTEIHKGLDFSADGD-EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
SLANVTEIH+GLDF A GD D FGIFSVKFSTDG+ELVA SD+ IYVYDL+ NK SLR
Sbjct: 203 SLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELVAGSSDDSIYVYDLETNKLSLR 262
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
I AH+SDVNTVCFADETGHL++SGSDD+ CKVWDRRCFISKG+A G+L GH+EGITFIDS
Sbjct: 263 ILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFISKGKAAGILEGHVEGITFIDS 322
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299
R DGRY ISNGKDQT KLWDIRKMS+N T +R R+YDWDYRWM+YP +A+ L HP D+S
Sbjct: 323 RGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRWMDYPPHAKNLMHPRDRS 382
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359
LATYKGHSVLRTLIRCYFSPEYST QKYIYTGS ++ VYIYDL++G VA L H +PVR
Sbjct: 383 LATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVYIYDLLTGVLVATLKHHKSPVR 442
Query: 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL-PKRRTVRARRFF 404
DC WHP YPML+SSSWD ++V+WE PG GEAP P ++ VR R F+
Sbjct: 443 DCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKRVRRRHFY 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555581|ref|XP_003546109.1| PREDICTED: LEC14B homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/403 (73%), Positives = 335/403 (83%), Gaps = 2/403 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE NYSGRGRFS+AD CHVLSRYLP GPW VD M SR Y SQFS DGS +A Q
Sbjct: 68 MLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQ 127
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++Y+VD+ WK++KDI + LRWT+TDTSLSPDQ +LVYAS+ I++IV VGS E
Sbjct: 128 GSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTE 187
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
S+ANVTEIH GL+FS+D +DEFGIFSVKFSTDG+ELVA SD I VYDL A+K SLRI
Sbjct: 188 SIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRI 247
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH+SDVNTVCFADE+GHLIFSGSDDS KVWDRRCF++KG+ G+LMGHLEGITFIDSR
Sbjct: 248 PAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSR 307
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRY ISNGKDQTTKLWDIRKMSSN N L D +WDYRWM+YP YAR LKHPHDQSL
Sbjct: 308 GDGRYLISNGKDQTTKLWDIRKMSSNAI-NLGLGDDEWDYRWMDYPEYARNLKHPHDQSL 366
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATYKGHSVLRTL+RCYFSP YST QKYIYTGSSD+SVYIYDLVSGAQVAKLD H APVRD
Sbjct: 367 ATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRD 426
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL-PKRRTVRARR 402
C WHP YPM+I+S+WD ++VRWE PG EAP P +R R R
Sbjct: 427 CSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHR 469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549044|ref|XP_003542908.1| PREDICTED: LEC14B homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 298/403 (73%), Positives = 335/403 (83%), Gaps = 2/403 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE NYSGRGRFS+AD CHVLSRYLP GPW V M SR Y SQFS DGS +A Q
Sbjct: 68 MLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVGRMKSRAYVSQFSADGSLLIAGFQ 127
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++Y+VD+ WK++KDI + LRWT+TDTSLSPDQ +LVYAS+ I++IV VGS E
Sbjct: 128 GSHIRIYDVDRGWKVKKDISARMLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTIE 187
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
S+ANVTEIH GL+FS+D +DEFGIFSVKFSTDG+ELVA SD I VYDL A+K SLRI
Sbjct: 188 SIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRI 247
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH+SDVNTVCFADE+GHLI+SGSDDS KVWDRRCF++KG+ G+LMGHLEGITFIDSR
Sbjct: 248 PAHQSDVNTVCFADESGHLIYSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSR 307
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRY ISNGKDQTTKLWDIRKMSSN N L D +WDYRWM+YP YAR LKHPHDQSL
Sbjct: 308 GDGRYLISNGKDQTTKLWDIRKMSSNAI-NLGLGDDEWDYRWMDYPEYARNLKHPHDQSL 366
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATYKGHSVLRTL+RCYFSP YST QKYIYTGSSD+SVYIYDLVSGAQVAKLD H APVRD
Sbjct: 367 ATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRD 426
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL-PKRRTVRARR 402
C WHP YPM+ISS+WD ++VRWE PG EAP P +R R RR
Sbjct: 427 CSWHPYYPMMISSAWDGDVVRWEFPGSDEAPASPNKREGRIRR 469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491526|ref|XP_004158926.1| PREDICTED: LOW QUALITY PROTEIN: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/406 (72%), Positives = 338/406 (83%), Gaps = 2/406 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE NYSG+GRFSA D CHVLSRYLPVNGPW VD M SR Y SQFS+DGS FVA Q
Sbjct: 83 MLAGRECNYSGKGRFSAGDCCHVLSRYLPVNGPWLVDQMTSRAYVSQFSSDGSLFVAGFQ 142
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++YNVD WK+QK+I K+LRWTITDTSLSPDQR+LVYAS+ I++IV+V S+ E
Sbjct: 143 GSHIRIYNVDSGWKVQKNILAKSLRWTITDTSLSPDQRYLVYASMSPIIHIVNVTSAETE 202
Query: 121 SLANVTEIHKGLDFSADGD-EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
SLANVTEIH+GLDF A GD D FGIFSVKFSTDG+ELVA SD+ IYVYDL+ NK SLR
Sbjct: 203 SLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELVAGSSDDSIYVYDLETNKLSLR 262
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
I AH+SDVNTVCFADETGHL++SGSDD+ CKVWDRRCFISKG+A G+L GH+EGITFIDS
Sbjct: 263 ILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFISKGKAAGILEGHVEGITFIDS 322
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299
R DGRY ISNGKDQT KLWDIRKMS+N T +R R+YDWDYR M+YP +A+ L HP D+S
Sbjct: 323 RGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRXMDYPPHAKNLMHPRDRS 382
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359
LATYKGHSVLRTLIRCYFSPEYST QKYIYTGS ++ VYIYDL++G VA L H +PVR
Sbjct: 383 LATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVYIYDLLTGVLVATLKHHKSPVR 442
Query: 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL-PKRRTVRARRFF 404
DC WHP YPML+SSSWD ++V+WE PG GEAP P ++ VR R F+
Sbjct: 443 DCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKRVRRRHFY 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436851|ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/400 (74%), Positives = 337/400 (84%), Gaps = 1/400 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE NYSGRGRFS+AD CH+LSRYLPVNGPW VD M SR Y SQFS DGS FVA Q
Sbjct: 84 MLAGREGNYSGRGRFSSADCCHMLSRYLPVNGPWLVDQMTSRAYVSQFSADGSLFVAGFQ 143
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++YNVD+ WK+QK+I K+LRWT+TDTSLSPDQR LVYAS+ IV+IV++GS+A E
Sbjct: 144 GSHIRIYNVDRGWKVQKNILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVNIGSAATE 203
Query: 121 SLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
SLAN+TEIH GLDFSA DE FGIFSVKFSTDG+ELVA SD+ IYVYDL+ANK SLR
Sbjct: 204 SLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGRELVAGSSDDSIYVYDLEANKLSLR 263
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
I AH SDVNTVCFADE+GHLI+SGSDDSLCKVWDRRCFISKG+ GVLMGHLEGITFIDS
Sbjct: 264 ILAHTSDVNTVCFADESGHLIYSGSDDSLCKVWDRRCFISKGKPAGVLMGHLEGITFIDS 323
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299
R DGR+ ISN KDQ+ KLWDIRKMSSN T R+Y+WDYRWM+YP+ AR LKHP DQS
Sbjct: 324 RGDGRHLISNSKDQSIKLWDIRKMSSNATCTPGFRNYEWDYRWMDYPTQARELKHPCDQS 383
Query: 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359
L+TYKGHSVLRTLIRCYFSP YST QKYIY+GSSD+ +YIYDL++GAQVA L+ H + VR
Sbjct: 384 LSTYKGHSVLRTLIRCYFSPSYSTGQKYIYSGSSDSCIYIYDLLTGAQVATLEHHKSVVR 443
Query: 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPKRRTVR 399
DC WHP YP+L+SSSWD +IV+WE PG GE PL K+R R
Sbjct: 444 DCNWHPNYPILVSSSWDGDIVKWEFPGNGEPPLIKKRIRR 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447537|ref|XP_003594044.1| LEC14B-like protein [Medicago truncatula] gi|355483092|gb|AES64295.1| LEC14B-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/403 (71%), Positives = 338/403 (83%), Gaps = 3/403 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE N+SGRG+FSAAD CH+ SRYLP GPW VD M SR Y SQFS+DGS F+A Q
Sbjct: 123 MLVGREGNFSGRGKFSAADRCHMSSRYLPTKGPWIVDRMGSRAYVSQFSDDGSLFIAGFQ 182
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++Y+VDK+WK++KDI + LRWTITDTSLSPD+++LVYAS+ I++IV+ GS+ E
Sbjct: 183 GSHIRIYDVDKDWKVKKDISARNLRWTITDTSLSPDRQYLVYASMSPIIHIVNAGSATTE 242
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
S+ANVTE+H GL+FS+D D DEFGIFS+KFSTDG+ELV+ S++ I VYDL A+K SLRI
Sbjct: 243 SVANVTEVHDGLNFSSDNDNDEFGIFSIKFSTDGRELVSGTSESSICVYDLGADKLSLRI 302
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH SDVNTVCFADE+GHLI+SGSDDS CKVWDRRCF++KG+ G+LMGHLEGITFI+SR
Sbjct: 303 PAHLSDVNTVCFADESGHLIYSGSDDSFCKVWDRRCFVAKGQPAGILMGHLEGITFINSR 362
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRY ISNGKDQTTKLWDIRKMSSN N L D +WDYRWM+YP YAR L+HP DQSL
Sbjct: 363 GDGRYLISNGKDQTTKLWDIRKMSSNAM-NLGLGDDEWDYRWMDYPKYARNLRHPQDQSL 421
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATY+GHSVLRTL+RCYFSP YST QKYIYTGSSD SVYIYDLVSG QVAKLD H AP+RD
Sbjct: 422 ATYQGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDGSVYIYDLVSGEQVAKLDHHEAPLRD 481
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGE--APLPKRRTVRAR 401
C WHP YPMLISS+WD +IVRWE PG G+ AP P RR+ R
Sbjct: 482 CSWHPFYPMLISSAWDGDIVRWEFPGNGQPPAPPPNRRSTGVR 524
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447539|ref|XP_003594045.1| LEC14B-like protein [Medicago truncatula] gi|355483093|gb|AES64296.1| LEC14B-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/403 (71%), Positives = 338/403 (83%), Gaps = 3/403 (0%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
MLVGRE N+SGRG+FSAAD CH+ SRYLP GPW VD M SR Y SQFS+DGS F+A Q
Sbjct: 67 MLVGREGNFSGRGKFSAADRCHMSSRYLPTKGPWIVDRMGSRAYVSQFSDDGSLFIAGFQ 126
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S+I++Y+VDK+WK++KDI + LRWTITDTSLSPD+++LVYAS+ I++IV+ GS+ E
Sbjct: 127 GSHIRIYDVDKDWKVKKDISARNLRWTITDTSLSPDRQYLVYASMSPIIHIVNAGSATTE 186
Query: 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180
S+ANVTE+H GL+FS+D D DEFGIFS+KFSTDG+ELV+ S++ I VYDL A+K SLRI
Sbjct: 187 SVANVTEVHDGLNFSSDNDNDEFGIFSIKFSTDGRELVSGTSESSICVYDLGADKLSLRI 246
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
PAH SDVNTVCFADE+GHLI+SGSDDS CKVWDRRCF++KG+ G+LMGHLEGITFI+SR
Sbjct: 247 PAHLSDVNTVCFADESGHLIYSGSDDSFCKVWDRRCFVAKGQPAGILMGHLEGITFINSR 306
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300
DGRY ISNGKDQTTKLWDIRKMSSN N L D +WDYRWM+YP YAR L+HP DQSL
Sbjct: 307 GDGRYLISNGKDQTTKLWDIRKMSSNAM-NLGLGDDEWDYRWMDYPKYARNLRHPQDQSL 365
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
ATY+GHSVLRTL+RCYFSP YST QKYIYTGSSD SVYIYDLVSG QVAKLD H AP+RD
Sbjct: 366 ATYQGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDGSVYIYDLVSGEQVAKLDHHEAPLRD 425
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIPGIGE--APLPKRRTVRAR 401
C WHP YPMLISS+WD +IVRWE PG G+ AP P RR+ R
Sbjct: 426 CSWHPFYPMLISSAWDGDIVRWEFPGNGQPPAPPPNRRSTGVR 468
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | ||||||
| TAIR|locus:2139335 | 493 | AT4G03020 "AT4G03020" [Arabido | 0.958 | 0.795 | 0.723 | 5.5e-157 | |
| ZFIN|ZDB-GENE-050809-116 | 541 | dcaf11 "ddb1 and cul4 associat | 0.909 | 0.687 | 0.421 | 3e-78 | |
| UNIPROTKB|F1SGL8 | 546 | DCAF11 "Uncharacterized protei | 0.909 | 0.681 | 0.416 | 1e-77 | |
| UNIPROTKB|Q8TEB1 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.909 | 0.681 | 0.411 | 7.1e-77 | |
| UNIPROTKB|Q5R7H5 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.909 | 0.681 | 0.411 | 9e-77 | |
| MGI|MGI:90168 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.909 | 0.677 | 0.411 | 9e-77 | |
| UNIPROTKB|Q5E9I8 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.909 | 0.681 | 0.408 | 1.1e-76 | |
| UNIPROTKB|F1MVT2 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.909 | 0.681 | 0.408 | 1.5e-76 | |
| RGD|1311288 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.909 | 0.677 | 0.408 | 5e-76 | |
| ASPGD|ASPL0000074293 | 660 | AN4800 [Emericella nidulans (t | 0.809 | 0.501 | 0.417 | 8.6e-73 |
| TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1530 (543.6 bits), Expect = 5.5e-157, P = 5.5e-157
Identities = 285/394 (72%), Positives = 328/394 (83%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML GRE N+SGRGRFSAAD CH+LSRYLP GPW VD M+SR Y SQFS DGS F+A Q
Sbjct: 87 MLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSRAYVSQFSTDGSLFIAGFQ 146
Query: 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120
S I++YNV+K WK+QKDI K+LRWT+TDTSLSPDQR LVYAS+ IV+IVDVGS + E
Sbjct: 147 GSRIRIYNVEKGWKVQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGSTE 206
Query: 121 SLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
S ANVTEIH GLDFS+D D FGIFSVKFSTDG+E+VA SD+ IYVYDL+AN+ SLR
Sbjct: 207 SHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLR 266
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239
AH SDVNTVCFADE+G+LI SGSDD+LCKVWDRRCFI + + GVL+GHLEG+TFIDS
Sbjct: 267 TVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDS 326
Query: 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR-LRDYDWDYRWMEYPSYARRLKHPHDQ 298
R DGRYFISNGKDQT KLWDIRKMSS+ LR+Y+WDYRWM+YP+ AR LKHP DQ
Sbjct: 327 RGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRWMDYPTEARDLKHPLDQ 386
Query: 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
S++TYKGHSVLRTLIRCYFSP +ST QKYIYTGS+D+SVYIYDLVSG +VA L H++PV
Sbjct: 387 SVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPV 446
Query: 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 392
RDC WHP YP LISSSWD ++V+WE PG GEAP+
Sbjct: 447 RDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPI 480
|
|
| ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 164/389 (42%), Positives = 233/389 (59%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE FS + + S +LP + +K D +V+ +S++G+ F++A Q
Sbjct: 138 MLAEREQGRCRGSSFSHGECSRIRSHFLPNHVVYK-DTYQQKVFCGVYSDEGNMFLSACQ 196
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ NI++Y+ + + ++K ++ + + W+I D +PD R ++Y+S +++ V
Sbjct: 197 DQNIRLYDTSRGRFTLKKTVKARDVGWSILDVCFTPDARCVLYSSWSDYIHVCSVDGD-- 254
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
E H LD + D E F +FS+ STDG+E++ +D +YV+D + NK +L+
Sbjct: 255 ------NETHTALDLNPD--ERRFCVFSLAASTDGKEILGGANDGCLYVFDREQNKRTLK 306
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLMGHLEGITFID 238
I AH+ DVN V FAD + L+FSGSDD+LCKVWDRR + + G L GH +GITFI
Sbjct: 307 IDAHEDDVNAVAFADSSSQLLFSGSDDALCKVWDRRTLREDRPQPVGHLAGHRDGITFIH 366
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSRLR--DYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWD+RK S SRL +WDYRW + P A +R K
Sbjct: 367 SKGDARYLISNSKDQTIKLWDVRKFSPKEGLAASRLAVTQQNWDYRWQQVPQRALKRHKL 426
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
D S+ TY+GH VL TLIRC FSPE+ST QK+IYTG S + IYD+++G+ V KL H
Sbjct: 427 TGDTSVMTYRGHGVLHTLIRCRFSPEFSTGQKFIYTGCSTGKIVIYDVLTGSVVCKLSNH 486
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
+A VRD WHP ++SSSWD I WE
Sbjct: 487 DACVRDVSWHPYNNNMVSSSWDGAIRLWE 515
|
|
| UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 162/389 (41%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML+ RE RG FS + V+S +LP N +D + + + +S DG F++A Q
Sbjct: 134 MLLQRERGLCHRGSFSLGEQSRVMSHFLP-NDLGFIDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ + K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQVIRMYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPV--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADMSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR DWDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQDWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP YST Q+YIY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPTYSTGQQYIYSGCSTGKVVVYDLLSGHIVKKLTSH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 160/389 (41%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 160/389 (41%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVISHFLP-NDLGFTDSYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGSHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 160/389 (41%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ + K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSRLR--DYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SRL +WDYRW + P A ++LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 159/389 (40%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE +G FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 159/389 (40%), Positives = 228/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE +G FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHQGSFSLGERSRVMSHFLP-NDLGFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ ++ K I+ + + W++ D + +PD +Y+S ++I ++
Sbjct: 193 DQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSR--LRDYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SR +WDYRW + P A R+LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTTH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD N+ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511
|
|
| RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 159/389 (40%), Positives = 227/389 (58%)
Query: 1 MLVGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ 60
ML RE RG FS + V+S +LP N D + + + +S DG F++A Q
Sbjct: 134 MLHQRERGLCHRGSFSLGEQSRVMSHFLP-NDLSFTDTYSQKAFCGIYSKDGQIFMSACQ 192
Query: 61 ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119
+ I++Y+ + K I+ + + W++ D + +PD +Y+S ++I +
Sbjct: 193 DQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICSIYGEG- 251
Query: 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179
+ H LD D E F +FS+ S+DG+E++ +D +YV+D + N+ +L+
Sbjct: 252 -------DTHTALDLRPD--ERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQ 302
Query: 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFID 238
I +H+ DVN V FAD + ++FSG DD++CKVWDRR + G L GH +GITFID
Sbjct: 303 IESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFID 362
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNT-TDNSRLR--DYDWDYRWMEYPSYA-RRLKH 294
S+ D RY ISN KDQT KLWDIR+ SS + SRL +WDYRW + P A ++LK
Sbjct: 363 SKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKL 422
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
P D SL TY+GH VL TLIRC FSP +ST Q++IY+G S V +YDL+SG V KL H
Sbjct: 423 PGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNH 482
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
A VRD WHP ++SSSWD ++ W+
Sbjct: 483 KACVRDVSWHPFEEKIVSSSWDGSLRLWQ 511
|
|
| ASPGD|ASPL0000074293 AN4800 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 146/350 (41%), Positives = 213/350 (60%)
Query: 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNI 64
RE+ G+G S + +P K+ +++ Y+ QFS+DG+FF + +Q+ +
Sbjct: 195 RELGVDGQGLQRTRVSS-IAQGLIPGTTADKIIHYDAKCYSGQFSDDGNFFFSCAQDFKV 253
Query: 65 KVYNVDK--NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV--DVGSSARE 120
++Y+ WK K ++ WTITD +LSPD RFL Y+S+ +V + D S+
Sbjct: 254 RMYDTSNPYEWKYYKTVDYPLASWTITDATLSPDNRFLAYSSLRQLVCLAPTDPADSSDP 313
Query: 121 ---SLANVTEIHKGLD-FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176
LA+ + D F DG F ++SV+FS DG+E+VA D+ + VYDL+ +
Sbjct: 314 IILDLASSAQRRVARDIFGRDG----FAVWSVRFSGDGREIVAGTGDHSVIVYDLETRQS 369
Query: 177 SLRIPAHKSDVNTVCFADETG-HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235
LRI H+ DVN VCF D++ H+++SGSDDS +VWDRR ++ GR GV +GH EG+T
Sbjct: 370 VLRIRNHEDDVNAVCFGDKSSPHILYSGSDDSTVRVWDRRS-MADGREAGVFVGHTEGLT 428
Query: 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT-DNSRLRDYD--WDYRWMEYPSYARRL 292
++DS+ DGRY +SN KDQT KLWD+RKM S D Y +DYR+ +PS
Sbjct: 429 YVDSKGDGRYVLSNSKDQTMKLWDLRKMMSTAKFDTLEPTSYGTGFDYRFDPFPSDFY-Y 487
Query: 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
HPHD S+ T++GHSVLRTLIRC+FSP S+ +Y+Y+GS D VY+++L
Sbjct: 488 PHPHDCSVVTFRGHSVLRTLIRCHFSPPGSSDSRYVYSGSEDGKVYVWNL 537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O24467 | LE14B_PRUAR | No assigned EC number | 0.7636 | 0.9779 | 0.8421 | N/A | no |
| Q40153 | LE14B_LITER | No assigned EC number | 0.6921 | 0.9584 | 0.8287 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 409 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-28 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 7e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-34
Identities = 79/344 (22%), Positives = 123/344 (35%), Gaps = 63/344 (18%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+ G V FS DG S + IKV++++ ++ + D + S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDVAASA 61
Query: 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155
D +L S + + D+ + G + SV FS DG+
Sbjct: 62 DGTYLASGSSDKTIRLWDLETG------ECVRTLTG---------HTSYVSSVAFSPDGR 106
Query: 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215
L ++ D I V+D++ KC + H VN+V F G + S S D K+WD
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASSSQDGTIKLWD-- 163
Query: 216 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275
+ G+ L GH + + DG +S+ D T KLWD+
Sbjct: 164 --LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST------------- 208
Query: 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335
+ L T +GH + FSP+ + +GS D
Sbjct: 209 ---------------------GKCLGTLRGHE--NGVNSVAFSPD----GYLLASGSEDG 241
Query: 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379
++ ++DL +G V L H V W P L S S D I
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 47/242 (19%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV-CFADETGHLIFS 202
G+ V FS DG+ L D I V+DL+ + + H V V AD G + S
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GTYLAS 68
Query: 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262
GS D ++WD + G L GH ++ + DGR S+ +D+T K+WD+
Sbjct: 69 GSSDKTIRLWD----LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322
+ L T +GH+ + FSP+
Sbjct: 125 ----------------------------------GKCLTTLRGHT--DWVNSVAFSPD-- 146
Query: 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++ + S D ++ ++DL +G VA L H V + P L+SSS D I W
Sbjct: 147 --GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
Query: 383 EI 384
++
Sbjct: 205 DL 206
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 45/243 (18%)
Query: 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 201
+ V S DG L + SD I ++DL+ +C + H S V++V F+ G ++
Sbjct: 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILS 109
Query: 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261
S S D KVWD + G+ L GH + + + DG + S+ +D T KLWD+R
Sbjct: 110 SSSRDKTIKVWD----VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
Query: 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321
+AT GH+ + FSP+
Sbjct: 166 TGKC----------------------------------VATLTGHT--GEVNSVAFSPDG 189
Query: 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381
+ + SSD ++ ++DL +G + L H V + P +L S S D I
Sbjct: 190 EK----LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 382 WEI 384
W++
Sbjct: 246 WDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-24
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRF 99
S V + FS DG ++S++ IKV++V+ K + + + SPD F
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGH--TDWVNSVAFSPDGTF 149
Query: 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159
+ +S + + D+ + H G + SV FS DG++L++
Sbjct: 150 VASSSQDGTIKLWDLRT---GKCVATLTGHTG------------EVNSVAFSPDGEKLLS 194
Query: 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219
+ SD I ++DL KC + H++ VN+V F G+L+ SGS+D +VWD R
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLR---- 249
Query: 220 KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
G L GH +T + DG+ S D T ++WD
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.4 bits (233), Expect = 6e-21
Identities = 91/395 (23%), Positives = 144/395 (36%), Gaps = 56/395 (14%)
Query: 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP 95
+ G + + FS DG ++ S + IK++++D K+ K +E SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG----LDFSADG------------- 138
D ++ AS + S L E H L FS DG
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 139 --------------DEDEFGIFSVKFSTDGQELVA-AGSDNFIYVYDLQANKC-SLRIPA 182
+ S+ FS DG L+A SD I ++DL K +
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242
H V + D G L+ SGS D ++WD R S L GH + + D
Sbjct: 241 HSDSVVSSFSPD--GSLLASGSSDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 243 GRYFISNGKDQTTKLWDIRKMS-----SNTTDNSRLRDYDWDYRWMEYPSYA------RR 291
G+ S D T +LWD+ + + + S R
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351
+ L T +GHS + ++ FSP+ + + +GS+D +V ++DL +G+ + L
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSV---SFSPDG----RVVSSGSTDGTVRLWDLSTGSLLRNL 408
Query: 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386
D H + V + P L S S D I W++
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 7e-19
Identities = 46/210 (21%), Positives = 76/210 (36%), Gaps = 47/210 (22%)
Query: 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235
+ H V V F+ + G L+ +GS D KVWD + G L GH +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWD----LETGELLRTLKGHTGPVR 55
Query: 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
+ + DG Y S D+T +LWD+
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLET--------------------------------- 82
Query: 296 HDQSLATYKGHSVLRTLIRCY-FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
+ + T GH+ Y S +S + + + S D ++ ++D+ +G + L H
Sbjct: 83 -GECVRTLTGHT-------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
V + P + SSS D I W++
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.3 bits (212), Expect = 2e-18
Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 20/288 (6%)
Query: 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 169
+L + + + S E I S+ FS DG+ L++ SD I ++
Sbjct: 33 LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW 92
Query: 170 DLQANKCSLRI--PAHKSDVNTVCFADETGHLIFS--GSDDSLCKVWDRRCFISKGRANG 225
DL + ++ H S V+ + + G+ I S D K+WD + G+
Sbjct: 93 DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS---TPGKLIR 149
Query: 226 VLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284
L GH E +T + DG+ S D T KLWD+R +T L + +
Sbjct: 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSSLA 205
Query: 285 YPSYARRLK--HPHDQSLATYKGHS--VLRTLIRCYFSPEYSTA---QKYIYTGSSDNSV 337
+ L D ++ + + +LR+ + + S+ + +GSSD ++
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265
Query: 338 YIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
++DL S + + L H++ V + P +L S S D + W++
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 40/161 (24%)
Query: 225 GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284
L GH G+T + DG+ + D T K+WD+
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----------------------- 39
Query: 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344
+ L T KGH+ + Y+ +GSSD ++ ++DL +
Sbjct: 40 -----------TGELLRTLKGHTGPVRDVAASAD------GTYLASGSSDKTIRLWDLET 82
Query: 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
G V L H + V + P +L SSS D I W++
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 4e-08
Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 17/199 (8%)
Query: 20 SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79
+ + + + G +S V + FS DG + S + +++++++ K+ +
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-KLLSSL 322
Query: 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139
K ++ S SPD + S + + + E H
Sbjct: 323 TLKGHEGPVSSLSFSPD--GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-------- 372
Query: 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199
+ SV FS DG+ + + +D + ++DL + H S V ++ F G
Sbjct: 373 -----VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF-SPDGKS 426
Query: 200 IFSGSDDSLCKVWDRRCFI 218
+ SGS D+ ++WD + +
Sbjct: 427 LASGSSDNTIRLWDLKTSL 445
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (117), Expect = 1e-06
Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 28/220 (12%)
Query: 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240
P+ S + E+G L+ + DSL + D + +G H + IT I
Sbjct: 23 PSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG--------HEDSITSIAFS 74
Query: 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD--- 297
DG +S D T KLWD+ L D + P L
Sbjct: 75 PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134
Query: 298 -----------QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346
+ + T +GHS T + FSP+ S D ++ ++DL +G
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSL--AFSPDGKL---LASGSSLDGTIKLWDLRTGK 189
Query: 347 QVAKLDFHNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIP 385
++ L H PV + P +LI+S S D I W++
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 76/349 (21%), Positives = 133/349 (38%), Gaps = 69/349 (19%)
Query: 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107
F DG FF A IK++ + K +DI + + + LS IC
Sbjct: 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS---------GICW 540
Query: 108 IVNI-VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166
I V SS E + V ++ + + E E ++S+ +S+ L+A+GSD+
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599
Query: 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226
S+ K+++ V F E+G + GS D +D R +
Sbjct: 600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR---NPKLPLCT 656
Query: 227 LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286
++GH + ++++ D +S+ D T KLWD+ MS + + + L
Sbjct: 657 MIGHSKTVSYV-RFVDSSTLVSSSTDNTLKLWDL-SMSISGINETPLH------------ 702
Query: 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY------ 340
++ GH+ ++ + S + YI TGS N V++Y
Sbjct: 703 ---------------SFMGHTNVKNFV------GLSVSDGYIATGSETNEVFVYHKAFPM 741
Query: 341 ----------DLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379
D VSG +V D + + CW L++++ NI
Sbjct: 742 PVLSYKFKTIDPVSGLEV---DDASQFISSVCWRGQSSTLVAANSTGNI 787
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-05
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
K + H V +V F G+L+ SGSDD +VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAF-SPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
+ + H V +V F G + SGSDD K+WD
Sbjct: 3 ELLKTLKGHTGPVTSVAF-SPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 344 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
SG + L H PV + P L S S D I W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 6e-04
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
G + L H PV + P +L S S D + W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 145 IFSVKFST-DGQELVAAGSDNFIYVYD-----LQANKCS--LRIPAHKSDVNTVCFADET 196
I V F+ D Q+L A D I + L N + + H V V F
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 256
+++ S D + VWD + +G+A V+ H + IT ++ DG + KD+
Sbjct: 138 MNVLASAGADMVVNVWD----VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193
Query: 257 LWDIRK 262
+ D R
Sbjct: 194 IIDPRD 199
|
Length = 493 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 26/137 (18%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR---WTITDTSLS 94
G V + FS DG +++S + IK+ W + LR + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKL------WDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG-LDFSADGDEDEFGIFSVKFSTD 153
PD L S + + V ++ G + G + + S+ +S D
Sbjct: 229 PDGYLLA--------------SGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPD 272
Query: 154 GQELVAAGSDNFIYVYD 170
G+ L + +D I ++D
Sbjct: 273 GKRLASGSADGTIRIWD 289
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.98 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| PTZ00420 | 568 | coronin; Provisional | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.97 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.97 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.95 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.94 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.93 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.92 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.92 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.9 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.9 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.89 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.89 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.89 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.89 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.88 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.88 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.87 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.86 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.86 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.83 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.83 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.82 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.81 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.8 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.76 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.73 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.72 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.72 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.71 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.69 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.68 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.68 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.66 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.65 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.65 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.64 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.64 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.58 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.57 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.56 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.56 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.54 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.54 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.54 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.52 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.5 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.47 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.45 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.43 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.43 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.4 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.4 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.38 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.36 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.34 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.34 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.27 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.26 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.26 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.22 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.21 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.18 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.17 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.1 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.08 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.07 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.07 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 99.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 99.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.0 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.99 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.98 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.96 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.95 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.87 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.81 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.78 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.77 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.76 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.73 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.72 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.59 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.56 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.47 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.47 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.43 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.38 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.38 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.33 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.31 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.29 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.26 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.24 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.21 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.12 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.12 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.1 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.1 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.07 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.01 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.98 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.95 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.94 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.94 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.92 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.92 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.9 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.89 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.85 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.84 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.84 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.82 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.82 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.78 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.7 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.63 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.58 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.54 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.49 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.48 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.47 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.43 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.34 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.26 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.22 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.21 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.21 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.2 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.18 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.13 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.12 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.08 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.04 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.0 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.97 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.96 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.96 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.88 | |
| PRK10115 | 686 | protease 2; Provisional | 96.73 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.63 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.61 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.59 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.5 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.45 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.42 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.31 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.2 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.2 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.16 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.14 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.12 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.06 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.04 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.04 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.02 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.97 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.86 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.65 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.59 | |
| PRK10115 | 686 | protease 2; Provisional | 95.59 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.49 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.45 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.26 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.21 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.06 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.57 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 94.54 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.49 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.45 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.34 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.29 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.12 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 94.01 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.89 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.62 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.59 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.55 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.52 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 93.41 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.38 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.37 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.3 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.25 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.19 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.69 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.63 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.58 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.57 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.53 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 92.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.5 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.48 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.37 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.21 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 92.11 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.57 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.33 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.86 | |
| PLN02153 | 341 | epithiospecifier protein | 90.81 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 90.75 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.37 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.26 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.2 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.12 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.11 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.11 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.09 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.04 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.97 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.86 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 89.13 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.06 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 89.03 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 89.02 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.9 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.4 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 88.38 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 88.32 | |
| PLN02153 | 341 | epithiospecifier protein | 88.11 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.4 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 87.03 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 86.88 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.69 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.51 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.45 | |
| KOG2006 | 1023 | consensus WD40 repeat protein [General function pr | 85.68 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-59 Score=358.79 Aligned_cols=319 Identities=21% Similarity=0.312 Sum_probs=284.2
Q ss_pred ceeeEEecCceeEeeccceEEEE---eeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSR---YLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~---~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.-|++|||+|+.+++++.+...+ .....+.++.++|...|.|++|+|||+.||+|+.||+|++||..+++++.. .
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~ 195 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--A 195 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--c
Confidence 46899999999999988775544 444556679999999999999999999999999999999999999877665 4
Q ss_pred cccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 81 TKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
+.+|...|++++|.| ..++||+++.||.++|||+..+.+.... .+|..+|+|++|--+|
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---------------sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---------------SGHTASVTCVRWGGEG- 259 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---------------ccCccceEEEEEcCCc-
Confidence 567888999999976 5789999999999999999887654332 2677799999997655
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe-----------------------------------CCCCcEE
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA-----------------------------------DETGHLI 200 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------------------~~~~~~l 200 (409)
++++|+.|++|++|+...|.+...+++|...|+.++.+ +..++.|
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 79999999999999999999999999999999999987 1123469
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
++|+.|.++.+|+.. ...+++..+.+|..-|+.+.|+||++++++++.|..|++||.++
T Consensus 340 VSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------------------ 398 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------------------ 398 (480)
T ss_pred EEecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC------------------
Confidence 999999999999963 56678888999999999999999999999999999999999998
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
++.+.+|++|- ..++.++||.|.++|++|+.|.++++|++++.+....+.+|...|.+
T Consensus 399 ----------------Gk~lasfRGHv------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 399 ----------------GKFLASFRGHV------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred ----------------cchhhhhhhcc------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 67788899987 66778899999999999999999999999999999999999999999
Q ss_pred eEEecCcCeEEeecCCCeEEEEe
Q 015301 361 CCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 361 ~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-57 Score=348.37 Aligned_cols=294 Identities=22% Similarity=0.337 Sum_probs=260.2
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... ...+|...|.|++|+|||+.||+|+.||+|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 4678999999999999999999999999999999999875544 4677888999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-----CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-----DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
..+++.... ...+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.+|+
T Consensus 186 pktg~~~g~--------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 186 PKTGQQIGR--------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCCCCcccc--------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 988875322 2236777899999977 567999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc-----------CCC--------------
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-----------RDG-------------- 243 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~-------------- 243 (409)
|+.|- ...+|++|+.|++|++|+. ..+.....+.+|...|+.++.+ |.+
T Consensus 252 CvrwG--G~gliySgS~DrtIkvw~a----~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 252 CVRWG--GEGLIYSGSQDRTIKVWRA----LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred EEEEc--CCceEEecCCCceEEEEEc----cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99995 6679999999999999995 4788999999999999999877 223
Q ss_pred -----------CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 244 -----------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 244 -----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
..|++|+.|.++.+|+-... .+++..+.+|.
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---------------------------------kkpi~rmtgHq----- 367 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---------------------------------KKPITRMTGHQ----- 367 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEeccccc---------------------------------ccchhhhhchh-----
Confidence 34999999999999996552 24567778887
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+..+.||||++++|+++.|..|++||.++|+.+.+|++|-.+|+.++|+.|.++|++|+.|.++++|++.+.+.
T Consensus 368 -~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 368 -ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred -hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 4455668999999999999999999999999999999999999999999999999999999999999999987543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=331.78 Aligned_cols=284 Identities=25% Similarity=0.314 Sum_probs=256.9
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEc
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDV 114 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~ 114 (409)
.|-+.+|..+.||+|++.|||||-+|.++||+..+...+. .+.+|...|.++.|+|. +..+|+|+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 4678999999999999999999999999999998874433 46778889999999997 679999999999999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
.+....... .+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~l---------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~- 312 (459)
T KOG0272|consen 249 SQETPLQDL---------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ- 312 (459)
T ss_pred CCCcchhhh---------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec-
Confidence 876432221 2566689999999999999999999999999999999888889999999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
++|.++++|+.|..-+|||+| ++.++..+.+|..+|.+++|+|+|..|++|+.|++++|||++.
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~------------ 376 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM------------ 376 (459)
T ss_pred CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc------------
Confidence 999999999999999999988 8999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
...+.++.+|.... ..+.|+| .|.+|++++.|++++||...+..+++++.|
T Consensus 377 ----------------------r~~ly~ipAH~nlV------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 377 ----------------------RSELYTIPAHSNLV------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred ----------------------cccceecccccchh------hheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 45577778887433 3446776 789999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
|.+.|.++..++|+++++|++.|.++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=305.66 Aligned_cols=297 Identities=22% Similarity=0.339 Sum_probs=260.1
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
...+|+||.+.|+++.|++|.+++++++.||.+.|||.-+..+...+... ...|..++|+|.|+++|+|+.|+...|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~---s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP---SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC---ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34799999999999999999999999999999999998877555443322 237999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|++.+.+...... ......+|.+-+.++.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus 124 y~ls~~d~~g~~~---------v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 124 YPLSTRDAEGNVR---------VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred Eecccccccccce---------eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 9998653322211 112234678889999999855 688999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
++|.+++.+++|+-|+..++||+| .+...+.+.+|...|+++.|.|+|.-+++|+.|++.++||++.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence 996699999999999999999988 7899999999999999999999999999999999999999998
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++.+..+.... ....+.+++||..|++|++|..|..+.+||.-.++.+..+
T Consensus 261 -------------------------D~~~a~ys~~~----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -------------------------DQELAVYSHDS----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -------------------------CcEEeeeccCc----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 45566666433 2345567789999999999999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
.+|...|+++..+|||..|+||++|..++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=303.64 Aligned_cols=273 Identities=22% Similarity=0.361 Sum_probs=241.3
Q ss_pred eeEEecCceeEeeccceE---EEEeeecCCCceeecCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+.||+|+..+++++... +|........++|.||.+.|.++.|+|. +..+|||+.||++++|++++...+. .
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~ 256 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---D 256 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---h
Confidence 467899999999877553 4443334455689999999999999997 5689999999999999999874444 3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|..++|+|+|++|++++.|.+-++||+.++...... .+|..+|.+++|.+||.++++|
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---------------EGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---------------EGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh---------------cccccccceeEecCCCceeecc
Confidence 5667779999999999999999999999999999988653222 2677789999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|..-+|||++++.++..+.+|..+|.+++|+ |+|..|++|+.|++++|||+| ....+..+.+|.+-|+.+.|+
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYS 396 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEec
Confidence 999999999999999999999999999999999 999999999999999999988 566689999999999999999
Q ss_pred C-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 241 R-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 241 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
| .|.+|++++.|+++++|..++ ..+++.+.||. .-++++
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~----------------------------------~~~~ksLaGHe------~kV~s~ 436 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRT----------------------------------WSPLKSLAGHE------GKVISL 436 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCC----------------------------------cccchhhcCCc------cceEEE
Confidence 8 788999999999999999888 67788899998 456778
Q ss_pred eecCCCCEEEEEeCCCeEEEEE
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d 341 (409)
++++|+.++++++.|.++++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 9999999999999999999995
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=291.77 Aligned_cols=305 Identities=24% Similarity=0.372 Sum_probs=259.0
Q ss_pred EEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+|.+..+.+..|.+.|+-+.||++|++||+++.|.+..+|.+.....+.-.....+|..+|..+.||||.++|++++
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 34456677788999999999999999999999999999999999887766666667778888999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH- 183 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 183 (409)
.+..+.+||+.++......... +...+.+++|.|||..+++|+.|+.+..||+.. ......++-
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~--------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr 353 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSG--------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR 353 (519)
T ss_pred chHheeeccCCcchhhhhcccC--------------cCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc
Confidence 9999999999999875544332 233699999999999999999999999999864 444444432
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...|.+++.. ++|+++++.+.|..|++++.. ...... +.....+|++++.+.+++++++.-.+..+.+||++.
T Consensus 354 ~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e- 426 (519)
T KOG0293|consen 354 DPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE- 426 (519)
T ss_pred cceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch-
Confidence 3568999999 899999999999999999964 222222 334567899999999999999999999999999986
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+..+.||.....+++.+|.-- +..++++|++|+.|+||+..
T Consensus 427 ---------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 427 ---------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ---------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEcc
Confidence 466788889988777777666543 56899999999999999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 387 (409)
+++++.++.||...|++++|+|... ++|+||.||+|+||.....
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999776 8999999999999988654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=299.09 Aligned_cols=338 Identities=17% Similarity=0.315 Sum_probs=271.5
Q ss_pred eeeEEecCceeEeeccceEEEEeeecC----------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVN----------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~----------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
-|+.|||||+|.+.+....+..+-.++ ...+..||-..|+++.|+.|.++|++|+.|.++++|.++..+.
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 589999999998887766554443322 2235679999999999999999999999999999999987755
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc--c--------------------cccc-eeceeee
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR--E--------------------SLAN-VTEIHKG 131 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~--~--------------------~~~~-~~~~~~~ 131 (409)
.......+|...|.+.-|..+...+.+.+.||.+.+|.....-. . ...+ .......
T Consensus 180 -~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 180 -LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred -cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 34456788999999999999999999999999999998861100 0 0000 0000000
Q ss_pred eeee------------cCCC--------------------------CcceeeEEEEEcCCCCeEEEEEec-CeEEEEECC
Q 015301 132 LDFS------------ADGD--------------------------EDEFGIFSVKFSTDGQELVAAGSD-NFIYVYDLQ 172 (409)
Q Consensus 132 ~~~~------------~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~ 172 (409)
.-+. +... -...+|..++|+..|.+|+.|+.. |.+.||+..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 0000 0000 123467788888889999988764 789999999
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
+...+.+.++|...+++++++ |++.++++|+.||.|+|||.+ .+-+..++..|...|+.+.|+..|+.+++.+-|
T Consensus 339 sEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 988888899999999999999 999999999999999999954 888999999999999999999999999999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|+|+.||+... +..+++..... ....+++.+|.|.++.+|+
T Consensus 414 GtVRAwDlkRY----------------------------------rNfRTft~P~p-----~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 414 GTVRAWDLKRY----------------------------------RNFRTFTSPEP-----IQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CeEEeeeeccc----------------------------------ceeeeecCCCc-----eeeeEEEEcCCCCEEEeec
Confidence 99999999873 33444444332 1123456778899999999
Q ss_pred CCC-eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 333 SDN-SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 333 ~dg-~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|. .|.+|++.+|+.+..+.||.+||.+++|+|++..|+++|+|.+|++||+-..
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 885 6999999999999999999999999999999999999999999999999655
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=268.07 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=237.5
Q ss_pred ceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeee--eeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 34 WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
-++.+|++.|+.++..+. -+.+++++.|.++.+|++....... ....+.+|...|..+..++||++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 378899999999999887 4678899999999999987652211 1233556777999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC--CCCCeE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVN 188 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~ 188 (409)
+||+.+++....+. +|...|.+++|++|.+.+++|+.|.+|.+|+.... +..++.. +.+.|+
T Consensus 89 lWDl~~g~~t~~f~---------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 89 LWDLATGESTRRFV---------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVS 152 (315)
T ss_pred EEEecCCcEEEEEE---------------ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEE
Confidence 99999986543322 45667999999999999999999999999998654 4444433 378999
Q ss_pred EEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 189 TVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 189 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
|+.|+|.. ..+|++++.|++|++||++ +.+....+.+|.+.++.++++|||.++++|+.||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~----- 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE----- 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC-----
Confidence 99999543 7799999999999999976 7788888999999999999999999999999999999999998
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
++.+..+... ..+.+++|+|+.-.|+.+.. ..|+|||+.++..
T Consensus 224 -----------------------------~k~lysl~a~-------~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 224 -----------------------------GKNLYSLEAF-------DIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAV 266 (315)
T ss_pred -----------------------------CceeEeccCC-------CeEeeEEecCCceeEeeccC-CceEEEeccchhh
Confidence 3444444433 34567789998777766654 4599999999988
Q ss_pred EEEecc----C-----CcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 348 VAKLDF----H-----NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~----~-----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..++. . .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877642 1 2245778999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=265.05 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=233.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
-+|++++.|.+|++|...+|.+...+.... +.|+.+...|+++.||+++ ...|++||+.+..........
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e------ 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFE------ 80 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEe------
Confidence 478999999999999999997776654333 4799999999999999887 567999999998875554433
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
+|...|+++.|..+|+.+++|+.||+++|||++...+.+.++ |.++|+++..+ |+...|++|..+|.|++|
T Consensus 81 -------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 81 -------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRVW 151 (311)
T ss_pred -------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEEE
Confidence 344469999999999999999999999999999976666565 78999999999 788899999999999999
Q ss_pred cccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 213 DRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 213 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
|++ ...+... +......|.++...|||.+++.+...|...+|++-.......
T Consensus 152 Dl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~----------------------- 204 (311)
T KOG0315|consen 152 DLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE----------------------- 204 (311)
T ss_pred Ecc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-----------------------
Confidence 986 3323222 233446899999999999999999999999999977322221
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcceeeeEEecCcCeE
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
-.++..++.|. +.+....+|||+++||+++.|.+++||+.++. +....+++|...+.+++||.|++||
T Consensus 205 -----l~P~~k~~ah~------~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 205 -----LEPVHKFQAHN------GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred -----ceEhhheeccc------ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 23455566666 33334468899999999999999999999988 6677889999999999999999999
Q ss_pred EeecCCCeEEEEecCCCcccC
Q 015301 371 ISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+||+.|+.+++|+++.+++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EecCCCCceeecccccCceee
Confidence 999999999999999887643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=273.34 Aligned_cols=295 Identities=25% Similarity=0.348 Sum_probs=250.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||++.|+.+.|+|+|.+||+|+.|..|.+|++..... ......+|.+.|..+.|.+|++.|++++.|.+++.||
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 46789999999999999999999999999999999765433 2234558899999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.++++.....+ .|..-|+.+.-+.-| .++.+++.|+++++||+++.+.+++++ ...+++++.|
T Consensus 119 ~~tG~~~rk~k---------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f 182 (338)
T KOG0265|consen 119 AETGKRIRKHK---------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF 182 (338)
T ss_pred cccceeeehhc---------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEe
Confidence 99998765544 334457777755444 456677889999999999988888775 4678999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
. ..+..+.+|+-|+.|++||+| .......+.+|.++|+.+..+|+|.++.+-+.|.++++||++...
T Consensus 183 ~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~-------- 249 (338)
T KOG0265|consen 183 K-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA-------- 249 (338)
T ss_pred c-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC--------
Confidence 9 888999999999999999987 788899999999999999999999999999999999999998732
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
+..+++..+.++...... .....+|||++..+.+|+.|..+++||..+...+..+.
T Consensus 250 ----------------------p~~R~v~if~g~~hnfek--nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 250 ----------------------PSQRCVKIFQGHIHNFEK--NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred ----------------------CCCceEEEeecchhhhhh--hcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 234557777776532211 12234688899999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+|.+.|+++.|+|...+|.+++.|.+|++=+
T Consensus 306 Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 306 GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999999999999999999999998744
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=260.30 Aligned_cols=292 Identities=21% Similarity=0.337 Sum_probs=237.4
Q ss_pred CceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+.+.+|.++|..++|+|- |..||+++.|+.|++|+...+.. ..+.....+|+..|.+++|+|.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3578899999999999998 88999999999999999985322 222233347888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC---eeeeEEcCCCCCe
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDV 187 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v 187 (409)
||.-..++...... .++|...|.+++|+++|++||+++.|..|.||.+..+ ++...++.|...|
T Consensus 87 Iw~k~~~efecv~~-------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 87 IWKKEDGEFECVAT-------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EeecCCCceeEEee-------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 99887665443322 2467788999999999999999999999999998744 5667789999999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
..+.|+ |...+|++++.|.+|++|+-.. .....+...+.+|...|.+++|++.|..|++++.|++++||-....-.
T Consensus 154 K~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 154 KHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred cEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 999999 7889999999999999998532 345678899999999999999999999999999999999998653100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC--
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-- 345 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-- 345 (409)
..|. +..+.+.+. ...|++++.|+.|++|.-...
T Consensus 230 ------------------------------------~~~s------r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 230 ------------------------------------GMHS------RALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred ------------------------------------hhcc------cceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 0011 233444454 457999999999999986542
Q ss_pred ce----E-EEeccCCcceeeeEEecC-cCeEEeecCCCeEEEEecC
Q 015301 346 AQ----V-AKLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 346 ~~----~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 385 (409)
++ + ..-..|...|++++|+|. ...|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 1 233568889999999995 5599999999999999875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=282.22 Aligned_cols=294 Identities=20% Similarity=0.279 Sum_probs=247.4
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee-------ee----ecccccceEEEEEeCCCCcEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK-------DI----ETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~-------~~----~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
++..|..+|.+.+|+|-.. .|++++.|-+.++|++........ .. ........|++++|+.+|..||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4555999999999999776 899999999999999875211100 00 11112347999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
|+.||.+++|+......... ..|.+||.++.|+..|.+|++++.|+++.+||..+++..+.+..
T Consensus 253 G~~~G~~riw~~~G~l~~tl----------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLISTL----------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred eecCcEEEEEecCchhhhhh----------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 99999999999876643222 14566899999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
|..+-.++.|- +...+++++.||.|+++.+. ...+..++.+|.+.|.++.|+|.+.+|++++.|++++||+...
T Consensus 317 ~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 317 HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred ccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 98887889996 66789999999999999964 7788899999999999999999999999999999999999876
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC---------CCEEEEEeC
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA---------QKYIYTGSS 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------~~~l~~~~~ 333 (409)
......+..|.. .++...|+|. +..+++++.
T Consensus 391 ----------------------------------~~~~~~l~~Hsk------ei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 391 ----------------------------------SNSVHDLQAHSK------EIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ----------------------------------Ccchhhhhhhcc------ceeeEeecCCCCccCCCcCCceEEEeec
Confidence 345566666662 2333344443 458999999
Q ss_pred CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|++|++||+..+.++.++..|..+|.+++|+|++++|++|+.||.|.+|+...++..
T Consensus 431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence 999999999999999999999999999999999999999999999999999876543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=282.38 Aligned_cols=287 Identities=22% Similarity=0.358 Sum_probs=247.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+ .........|+.+|.++.|++++.++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 356899999999999999999999999999742 23334467799999999999999999999999999999986554
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
...... .|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+ |...
T Consensus 172 Vk~~~a---------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kg 235 (464)
T KOG0284|consen 172 VKIIQA---------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKG 235 (464)
T ss_pred hHHhhH---------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cccc
Confidence 432222 223479999999999999999999999999999988888899999999999999 7888
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+|++++.|..|++||.| ++.++.++.+|+..|..+.|+|++++|++++.|..++++|++++
T Consensus 236 LiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--------------- 296 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--------------- 296 (464)
T ss_pred eeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------------
Confidence 99999999999999976 89999999999999999999999999999999999999999963
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEe-ccCCc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNA 356 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~ 356 (409)
+.+..+++|... +.+..|+| ...+|.+|+.||.|..|.+...+++..+ .+|..
T Consensus 297 -------------------kEl~~~r~Hkkd------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 297 -------------------KELFTYRGHKKD------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred -------------------HHHHHhhcchhh------heeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 456777888732 23334454 4678999999999999999877776666 47999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.|++++|+|-|.+|++|+.|.++++|.-....
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 99999999999999999999999999765443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=273.89 Aligned_cols=292 Identities=24% Similarity=0.351 Sum_probs=261.4
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
...+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++. ...+++|...+.+++|+..|++|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 45568899999999999999999999999999999999999855 345778888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||.++.... .... .+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++++|...|..+
T Consensus 176 LWd~~~~~~c-~ks~-------------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 176 LWDFDTFFRC-IKSL-------------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred heeHHHHHHH-HHHh-------------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 9999764211 1111 1445579999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---------------CCeEEEEeCCCcE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---------------GRYFISNGKDQTT 255 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i 255 (409)
..+ .++.++++++.|.++++|-+ .+..+...++.|..+|.+++|.|. +.++.+++.|++|
T Consensus 242 ~v~-~DGti~As~s~dqtl~vW~~----~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 242 RVN-QDGTIIASCSNDQTLRVWVV----ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred Eec-CCeeEEEecCCCceEEEEEe----ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 999 99999999999999999995 477788889999999999999762 2589999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+.+ +.++.++.+|. ..+..++|+|.|+||+++.+|+
T Consensus 317 k~wdv~t----------------------------------g~cL~tL~ghd------nwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 317 KIWDVST----------------------------------GMCLFTLVGHD------NWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred EEEeccC----------------------------------CeEEEEEeccc------ceeeeeEEcCCCeEEEEEecCC
Confidence 9999998 67788999998 4455668999999999999999
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
++++||+++++++.++..|...|+++.|+.+..+++||+-|..+++|.-
T Consensus 357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999973
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=275.86 Aligned_cols=345 Identities=18% Similarity=0.229 Sum_probs=260.7
Q ss_pred eeeEEecCcee-EeeccceEEEEeeecCCCc----eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRF-SAADSCHVLSRYLPVNGPW----KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~----~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.++.|-|..-| +++++.+....++. .+|+ .+..|..-|+|+.|+|||+++|+++.||+|.+||-.+++.+..+-
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffe-GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFE-GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEee-CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 34455555544 34444444444443 3334 456899999999999999999999999999999999998888877
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece----eeeeeee--------------------
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI----HKGLDFS-------------------- 135 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~----~~~~~~~-------------------- 135 (409)
...+|++.|.+++|+||++.+++++.|.+++|||+.+.+......+... ..+.-+.
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 7788999999999999999999999999999999998876544333222 1111111
Q ss_pred ----cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 136 ----ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 136 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
....+|...|+++..+|++++|++|+.||.|.-|+..++..-... +.|...|.+++-+ +...+++.+.|.+++
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLR 387 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEE
Confidence 011279999999999999999999999999999999988765443 6799999999987 335677888999999
Q ss_pred EecccccccCCc----------e-----------------eeeeecc--------ccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 211 VWDRRCFISKGR----------A-----------------NGVLMGH--------LEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 211 iwd~~~~~~~~~----------~-----------------~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
+.++........ . +..++.+ .-...+++++|+++.++.|+.|+.|
T Consensus 388 ~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkv 467 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKV 467 (603)
T ss_pred EEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceE
Confidence 997631100000 0 0011111 1234678899999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++|.+..... ........|. ..+..++||||+.+||+|...+
T Consensus 468 hvysl~g~~l--------------------------------~ee~~~~~h~------a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 468 HVYSLSGDEL--------------------------------KEEAKLLEHR------AAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred EEEEecCCcc--------------------------------cceeeeeccc------CCceEEEECCCCcEEEEeccCC
Confidence 9999876321 1111223333 4456678999999999999999
Q ss_pred eEEEEEccCCceE-EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 336 SVYIYDLVSGAQV-AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 336 ~v~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+.+||+.+.+.. ..+..|...|.+++|+|+..++|||+.|.+|.||++....+.
T Consensus 510 kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999988763 334459999999999999999999999999999999876554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=288.88 Aligned_cols=340 Identities=17% Similarity=0.251 Sum_probs=264.2
Q ss_pred ceeeEEecCceeEeeccce----EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+..++|+..|.+++-++.. .+|.+....-..+.+||...++|+++||||+++|||+.||.|+|||..++.+...
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-- 387 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-- 387 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE--
Confidence 4567777778888876643 6777777777778899999999999999999999999999999999999877665
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...|+..|+.+.|+..++.+++++.||+|+.||+...+.-+....+.+. ...|++..|.|..+.+
T Consensus 388 -FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~--------------QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 388 -FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI--------------QFSCVAVDPSGELVCA 452 (893)
T ss_pred -eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce--------------eeeEEEEcCCCCEEEe
Confidence 4567779999999999999999999999999999887665544443322 4788999999998888
Q ss_pred EEec-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 160 AGSD-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 160 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|+.| -.|.+|++++|+.+-.+.+|.++|.+++|+ +.++.|+++++|.+|++||+- .......++ .+...+..++
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if---~s~~~vEtl-~i~sdvl~vs 527 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIF---SSSGTVETL-EIRSDVLAVS 527 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEee---ccCceeeeE-eeccceeEEE
Confidence 8876 479999999999999999999999999999 899999999999999999974 233333433 4667899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|.|+|+.|+++.-||.|.+||.....+............ .......+.... .........
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~------------------gR~~~D~~ta~~--sa~~K~Ftt 587 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG------------------GRKETDRITAEN--SAKGKTFTT 587 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc------------------cccccceeehhh--cccCCceEE
Confidence 999999999999999999999987554433322110000 000001111110 111244567
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---------------------------------------------
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--------------------------------------------- 353 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------------------------------------------- 353 (409)
+++|+||.++++|+....|++|++.++-.++.++-
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~ 667 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGV 667 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCcc
Confidence 78999999999999999999999987655444321
Q ss_pred -----------CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 354 -----------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 354 -----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..-.|..+.|+|.|+.++.++..| |.||.+.+
T Consensus 668 ~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 668 QRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 012478899999999999999887 56777744
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=277.25 Aligned_cols=279 Identities=20% Similarity=0.315 Sum_probs=246.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|++++|+.+|..||+|+.||.+++|+.... ....+..|+++|.++.|+.+|.+|++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 67999999999999999999999999998765 33346678889999999999999999999999999999888765
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...... ..+-..+.|-.+. .+++.+.|+.|+|+.+....++.++.+|.++|.++.|+ |.+.+|
T Consensus 312 q~f~~~---------------s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LL 374 (524)
T KOG0273|consen 312 QQFEFH---------------SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLL 374 (524)
T ss_pred Eeeeec---------------cCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceE
Confidence 444332 2234668886544 58899999999999999999999999999999999999 899999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC---------CeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---------RYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
++++.|++++||.. ........+.+|...|..+.|+|+| ..+++++.|++|++||+..
T Consensus 375 aS~SdD~TlkiWs~----~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------- 441 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSM----GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------- 441 (524)
T ss_pred EEecCCCeeEeeec----CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------
Confidence 99999999999995 4778888999999999999999954 4689999999999999988
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+.++..|..|. ..+++++|||+|+++|+|+.||.|.+|+.++++..+.+
T Consensus 442 -------------------------gv~i~~f~kH~------~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 442 -------------------------GVPIHTLMKHQ------EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred -------------------------CceeEeeccCC------CceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 67788888887 56778899999999999999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.+ .+.|..++|+.+|.+|..+-.||.+.+-|+.
T Consensus 491 ~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 85 5669999999999999999999999998874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=289.46 Aligned_cols=301 Identities=21% Similarity=0.349 Sum_probs=256.4
Q ss_pred EEeeecCCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA 103 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 103 (409)
.-++|......+.||+..|+++.|.| .+.+|++++.|+.|+||++-...... ....+|..+|.+++|+++|..++++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--rtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--RTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--hhhhcchhhhhhhhccccCCeeeee
Confidence 45667777789999999999999999 89999999999999999987743332 2466788899999999999999999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
+.|+.+++||++++++........ .++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDK----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred ecceeeeeeccccceEEEEEecCC----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999998866554433 58999999988 8899999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|-+.|..+.|. +++..+++.+.|++++||+.+ ....++. ...+.....++..+|++.+++.-+.|+.|.++.+.
T Consensus 341 hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 341 HLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 99999999999 899999999999999999976 3332222 22334456789999999999999999999999876
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.... ...-..+++|..... ...+.|||||++|++|+.||.+.+||
T Consensus 416 ~~~r-------------------------------~nkkK~feGh~vaGy----s~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 416 PPFR-------------------------------LNKKKRFEGHSVAGY----SCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cccc-------------------------------cCHhhhhcceeccCc----eeeEEEcCCCCeEEeecCCccEEEee
Confidence 5221 123456677765433 34567999999999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEe
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWE 383 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~ 383 (409)
.++-+.+..+++|.+++..+.|+|... .+||++.||.|++|+
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999766 899999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=293.75 Aligned_cols=343 Identities=16% Similarity=0.213 Sum_probs=278.3
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
-++|+|.|..+++++.+ .+|++........|+||.+.|.++.|.|+-. .|++|..|+++++||+.+... ....
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~ 187 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHT 187 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHH
Confidence 36889999888887655 5666666666679999999999999999765 488999999999999987644 3334
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecC------------CC---------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSAD------------GD--------- 139 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------- 139 (409)
...|.+.|++++|++|+..+++++.|..+.+||+.+-+........+...+..+... +.
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 566888999999999999999999999999999965443222221111111111111 00
Q ss_pred --------------------------------------------------------------------------------
Q 015301 140 -------------------------------------------------------------------------------- 139 (409)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (409)
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence
Q ss_pred ---------------CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 140 ---------------EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 140 ---------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
+|...|.++....+|.+|++|+.|.++++|.++++. ++....+|+..|.+++++.....+|
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 688889999866678899999999999999885443 3445678999999999986677899
Q ss_pred EEeeCCCeEEEecccccccCCc-----eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++++.|+++++|+++...++.. .......|...|++++++|+.+++++|+.|++.++|+++.
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------------- 494 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------------- 494 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-------------
Confidence 9999999999999874111111 1123457999999999999999999999999999999986
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
.....++.+|. +.+|++.|+|..+.++++|.|++|+||.+.+..++.++.||.
T Consensus 495 ---------------------~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 495 ---------------------LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred ---------------------ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 56678899998 678899999999999999999999999999999999999999
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|..+.|-.+++.|+|++.||.|++|++.+.+-.
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999999999999999999999887643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=264.81 Aligned_cols=289 Identities=18% Similarity=0.272 Sum_probs=246.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.+.|.|+++.|-+.+|++|+.|++|+|||+.++..... ..+|...|..+++|+...||++++.|+.|+.||
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46789999999999999999999999999999999999954443 556777999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
++..+...... +|-..|.+++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.
T Consensus 222 Le~nkvIR~Yh---------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 222 LEYNKVIRHYH---------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred chhhhhHHHhc---------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 99887654332 566689999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
+-+..+++|+.|++|++||++ .++....+..|+..+.+++.+|....+++++.|. ++-|++..
T Consensus 287 -~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~----------- 349 (460)
T KOG0285|consen 287 -PTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE----------- 349 (460)
T ss_pred -cCCCceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc-----------
Confidence 556678999999999999987 8888899999999999999999999999999885 99999877
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+..+..+.+|.... ..++.. ...++++|+++|.+.+||.+++-..+..+.
T Consensus 350 -----------------------g~f~~nlsgh~~ii------ntl~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 350 -----------------------GEFLQNLSGHNAII------NTLSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred -----------------------cchhhcccccccee------eeeeec-cCceEEEcCCceEEEEEecCcCcccccccc
Confidence 44455566666332 222322 246899999999999999999865444421
Q ss_pred --------CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 --------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 --------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+..|.+.+|...+..|++|..|.+|++|.-++.
T Consensus 400 ~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 400 IVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 2457899999999999999999999999986654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=297.84 Aligned_cols=293 Identities=32% Similarity=0.520 Sum_probs=252.7
Q ss_pred eeecC-CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 35 KVDGM-NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h-~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.+.+| ...|.|+.|+++|+++++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|++|++||
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 44444 78999999999999999999999999999966642 12223367888999999999999999999999999999
Q ss_pred cCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 114 VGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
+... ...... .+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|
T Consensus 232 ~~~~~~~~~~l---------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 232 LKDDGRNLKTL---------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ccCCCeEEEEe---------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 9433 322211 256778999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCc--eeeeeeccccc--eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLEG--ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+ +++++|++++.|+.|++||+. .+. +...+..+... ++++.|+|++.++++++.|+.+++||++.
T Consensus 297 ~-~d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~------ 365 (456)
T KOG0266|consen 297 S-PDGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS------ 365 (456)
T ss_pred C-CCCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC------
Confidence 9 999999999999999999975 555 44556665555 99999999999999999999999999998
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
...+..+.+|... ..+.+++..++.+.++++|+.|+.|++||+.++..+
T Consensus 366 ----------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 366 ----------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred ----------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 4556667777654 266777788899999999999999999999999999
Q ss_pred EEeccC-CcceeeeEEecCcCeEEeec--CCCeEEEEecC
Q 015301 349 AKLDFH-NAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 385 (409)
Q Consensus 349 ~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 385 (409)
..+.+| ...+..+.|+|...++++++ .|+.+++|..+
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999 88999999999999999998 78999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=259.17 Aligned_cols=315 Identities=15% Similarity=0.163 Sum_probs=254.1
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
+++.+|+-.+.++++.+ ++|+.-.......+.+|+..|+|+.||.||.+||||+.+|.|+||+..++.....+....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 57888988899997766 556655556667899999999999999999999999999999999999986665554222
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
..|.-+.|+|.+..|+.|+.||.+.+|.+.++...... .+|..++++-.|.|+|+.++++..
T Consensus 149 ---~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~---------------~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 149 ---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM---------------SGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ---CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe---------------cCCCCCcccccccCCCceEEEEec
Confidence 26888999999999999999999999999886332222 246668999999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--------ccccc
Q 015301 163 DNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--------GHLEG 233 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~ 233 (409)
||+|++||..+++++..+.. ......++.++ ..+..++.|+.++.+++-+. ..++.+.... .+...
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~----~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNN----GSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEcc----ccceEEEecCCCCccccccchhh
Confidence 99999999999999888752 24466788888 88899999999999888873 3555544444 34444
Q ss_pred eeEEEE---cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 234 ITFIDS---RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 234 v~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
+.++.+ +..=.+.++|+-||+|.|||+.. ..++..-.|...
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-----------------------------------~~~R~~c~he~~- 329 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAA-----------------------------------STLRHICEHEDG- 329 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEeccc-----------------------------------chhheeccCCCc-
Confidence 555554 44556789999999999999987 223333334422
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..+.|-+ ..+|++++.+|.|+.||.++|++..++.+|...|.+++.+|+.++++|+|.|++.+|++++
T Consensus 330 -----V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 -----VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 23344555 5789999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=244.70 Aligned_cols=293 Identities=18% Similarity=0.265 Sum_probs=243.7
Q ss_pred eeEeeccceEEEEeee---cCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE
Q 015301 14 RFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (409)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~ 90 (409)
.++++.+.+...+++. ..+..++....+.|+.+...||++.||+++. ..|++||+.++... ......+|...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEE
Confidence 4677777765555544 4455677778899999999999999999985 57999999988443 45566778889999
Q ss_pred EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEE
Q 015301 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 170 (409)
Q Consensus 91 ~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 170 (409)
+.|..+|+.+++|+.||+++|||++.....+.... ..+|+++..+|+...|++|..+|.|++||
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------NSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccC----------------CCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 99999999999999999999999998665554443 33799999999999999999999999999
Q ss_pred CCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 171 LQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 171 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
+.+..+...+ +....+|.++... +++.+++++...|..++|++-.. .....++..++.|.+.+..+.+||++++|+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 9887665544 4556789999999 99999999999999999997531 223446667889999999999999999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.|.+++||+.++. -+.-..+++|. +..|..+||.||+|
T Consensus 232 t~ssdktv~iwn~~~~---------------------------------~kle~~l~gh~------rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF---------------------------------FKLELVLTGHQ------RWVWDCAFSADGEY 272 (311)
T ss_pred eecCCceEEEEecCCc---------------------------------eeeEEEeecCC------ceEEeeeeccCccE
Confidence 9999999999999873 02233445555 67888899999999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
|++|+.|+.+++|++..++.+....+|.....+++..
T Consensus 273 lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999888887754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=295.64 Aligned_cols=282 Identities=21% Similarity=0.369 Sum_probs=231.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
+++..-...++|..|++|+++||.|..|..|++|.+... .+.+. +. ..+- ..+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~l---~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASDL---SNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhhh---ccccccccchhhhhcc
Confidence 344455567888888888888888888888888887643 21111 11 0110 1111222233333444
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..+...... .-+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|.++.|+
T Consensus 438 ~~~~~~~~~---------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 438 DDSSGTSRT---------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred ccCCceeEE---------------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec
Confidence 333222111 12678899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
|.|.++|+++.|++.++|.. ....+.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||+.+
T Consensus 503 -P~GyYFatas~D~tArLWs~----d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~----------- 566 (707)
T KOG0263|consen 503 -PRGYYFATASHDQTARLWST----DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST----------- 566 (707)
T ss_pred -CCceEEEecCCCceeeeeec----ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-----------
Confidence 89999999999999999995 47888999999999999999999999999999999999999998
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+..++.|.||. ..+.+++|||+|++|++|+.||.|.+||+.+++++..+.+
T Consensus 567 -----------------------G~~VRiF~GH~------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 567 -----------------------GNSVRIFTGHK------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred -----------------------CcEEEEecCCC------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 67788999988 4566778999999999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|.+.|.++.|+.||..||++|.|..|++||+.....
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999999976443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=275.24 Aligned_cols=287 Identities=28% Similarity=0.439 Sum_probs=243.6
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++.+|.++|++++|+|++++|++++.||.+++|++.++..... ...|...+..+.|+|++++|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 46779999999999999999999999999999999987753333 334556788999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|+
T Consensus 80 ~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 80 LETGECVRTLT---------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCcccceEEEe---------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 98753322111 233469999999998888888879999999999899888888899999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
+++.++++++.|+.+++||++ .......+..|...+.++.|+|+++.+++++.|+.+++||++..
T Consensus 145 -~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------- 209 (289)
T cd00200 145 -PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------- 209 (289)
T ss_pred -CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----------
Confidence 678888888889999999975 56667777788889999999999999999999999999999862
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
..+..+..+. ..+..+.++|++.++++++.||.|++||+.+++.+..+..
T Consensus 210 ------------------------~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 210 ------------------------KCLGTLRGHE------NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred ------------------------ceecchhhcC------CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 2333333333 2345567888888999888899999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
|...|.+++|+|++++|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=244.33 Aligned_cols=292 Identities=22% Similarity=0.352 Sum_probs=251.2
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.|.+....+.+|.++|.++.|+-||+|.++++.|.+|++|+...+..+.. ..+|...|..++.+.|+..+++|+.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCc
Confidence 35556678899999999999999999999999999999999998866554 445556899999999999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--CeeeeEEcCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--NKCSLRIPAHKS 185 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~ 185 (409)
.+.+||+.+++...... +|...|+.++|+.+...+++|+.|.++++||.++ .++++.+.....
T Consensus 82 ~v~vwDV~TGkv~Rr~r---------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR---------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred eEEEEEcccCeeeeecc---------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999998755443 5667899999999999999999999999999875 467888888889
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
.|.++... +..|++|+.||+++.||+| .+.......+ .+|++++|+++++..+.++.|+++++.|-.+
T Consensus 147 ~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t--- 214 (307)
T KOG0316|consen 147 GVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET--- 214 (307)
T ss_pred ceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch---
Confidence 99999987 6789999999999999988 5555555544 5799999999999999999999999999888
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
++.+..+++|........+.+. .....+++|++||.|++||+...
T Consensus 215 -------------------------------GklL~sYkGhkn~eykldc~l~----qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 215 -------------------------------GKLLKSYKGHKNMEYKLDCCLN----QSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred -------------------------------hHHHHHhcccccceeeeeeeec----ccceeEEeccCCceEEEEEeccc
Confidence 6788899999887777666544 34789999999999999999999
Q ss_pred ceEEEeccCCcc-eeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 346 AQVAKLDFHNAP-VRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 346 ~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..+..+..+... |.+++++|....|+++. ++.+..|.-.
T Consensus 260 ~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 260 TQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eeeeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 999999988887 89999999988777775 4566777543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=258.24 Aligned_cols=380 Identities=19% Similarity=0.245 Sum_probs=266.4
Q ss_pred EEecCc-eeEeeccceE-EEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc
Q 015301 8 NYSGRG-RFSAADSCHV-LSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (409)
Q Consensus 8 ~~s~dg-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 85 (409)
...|.| +++.+.+... +..+-.......+.+|..+++-..|||.|.|+|+|...|+|+|||....+.+.+ .+.....
T Consensus 25 g~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-nef~v~a 103 (603)
T KOG0318|consen 25 GGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-NEFQVLA 103 (603)
T ss_pred ccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-eeeeecc
Confidence 334555 3555544443 444444444568889999999999999999999999999999999876534332 2344455
Q ss_pred ceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccc----------cceec----------------eeeeeeee
Q 015301 86 WTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESL----------ANVTE----------------IHKGLDFS 135 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~----------~~~~~----------------~~~~~~~~ 135 (409)
++|..++|++|++.|++.+.. |.+.+||..+..-... .+... ....+.|.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 699999999999999877632 3566777654211100 00000 01123344
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
.....|..-|+++.|+|||.++++++.||.+.+||-.+++.+..+. +|.+.|.+++|+ |++..+++++.|.+++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEE
Confidence 4455788889999999999999999999999999999999999987 899999999999 899999999999999999
Q ss_pred ccccc---------------------------------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 213 DRRCF---------------------------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 213 d~~~~---------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
|+... .........+.+|...|+++..+|++++|++++.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 96411 112224455678999999999999999999999999
Q ss_pred cEEEeeCCCCccccccc----cccccc-----------ccccc--cc-------------cccccceeccccCc------
Q 015301 254 TTKLWDIRKMSSNTTDN----SRLRDY-----------DWDYR--WM-------------EYPSYARRLKHPHD------ 297 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~----~~~~~~-----------~~~~~--~~-------------~~~~~~~~~~~~~~------ 297 (409)
.|.-|+..++.+..... ..+..+ .|+-. .. ....+...+....+
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 99999998866543211 111111 11110 00 11111111111111
Q ss_pred ---cceeeeeccccee--eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEecCcCeE
Q 015301 298 ---QSLATYKGHSVLR--TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 298 ---~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
..+..++.+.... .+.-.....+++|++..+++|+.||.|+||.+..++. ...+..|.++|+++++|||+.+|
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 1111112111110 1111233567899999999999999999999987653 33456799999999999999999
Q ss_pred EeecCCCeEEEEecCCCcc
Q 015301 371 ISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~ 389 (409)
|++...+.+.+||+.+.+.
T Consensus 503 a~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREV 521 (603)
T ss_pred EEeccCCcEEEEEcccCce
Confidence 9999999999999988765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=245.81 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=236.8
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN---WKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~ 77 (409)
+-++-|++|.+.+.+.+. .++|+.+.......+.--...|..++|+|.|+++|+|+-|+...||++.+. .....
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 457889999998777554 467888888877777777899999999999999999999999999999854 22344
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCe
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQE 156 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 156 (409)
.....+|.+-+.++.|.+ ...|++++.|.+..+||+++++....+. +|.+.|.+++++| +++.
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~---------------GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH---------------GHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec---------------CCcccEEEEecCCCCCCe
Confidence 456788999999999987 5578899999999999999987644332 6777899999999 9999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee--eccccce
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGI 234 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v 234 (409)
+++|+-|+..++||++.+..++++.+|.+.|++++|. |++.-|++|+.|++.++||+| ....+..+ .....+|
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLR----ADQELAVYSHDSIICGI 276 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeec----CCcEEeeeccCcccCCc
Confidence 9999999999999999999999999999999999999 899999999999999999998 33333333 3345689
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
++++|+..|++|++|..|.++.+||.-+ ++.+..+.+|....
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk----------------------------------~e~vg~L~GHeNRv---- 318 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK----------------------------------GERVGVLAGHENRV---- 318 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc----------------------------------cceEEEeeccCCee----
Confidence 9999999999999999999999999876 56677788888543
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.++..+|||..|++|+-|..++||.
T Consensus 319 --Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 --SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --EEEEECCCCcEEEecchhHheeecC
Confidence 4457899999999999999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=303.15 Aligned_cols=295 Identities=22% Similarity=0.340 Sum_probs=233.2
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eee-eeeecccccceEEEEEeCC-CCcEEEEEecCCE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQ-KDIETKALRWTITDTSLSP-DQRFLVYASICAI 108 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 108 (409)
.+.+|.+.|++++|+|+|++||+|+.|++|+||+..... ... ..... .+...+.+++|+| ++.+|++++.||.
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 345699999999999999999999999999999976421 100 01111 1234789999987 4789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
|++||+.+++..... .+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+
T Consensus 557 v~lWd~~~~~~~~~~---------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 557 VQVWDVARSQLVTEM---------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEECCCCeEEEEe---------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 999999876432211 24566899999997 7889999999999999999999888888754 689
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.++.|+++++.+|++|+.||.|++||++. .......+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~---~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~- 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRN---PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG- 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCC---CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc-
Confidence 99999868899999999999999999862 222456677899999999997 6889999999999999998752110
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
.....+..+.+|.. .+..+.++|++.+|++|+.|+.|++|+.....+
T Consensus 696 ---------------------------~~~~~l~~~~gh~~------~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 696 ---------------------------INETPLHSFMGHTN------VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred ---------------------------cCCcceEEEcCCCC------CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 01234566667653 233457889999999999999999999876654
Q ss_pred EEEe-------------ccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 348 VAKL-------------DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 348 ~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+..+ ..|...|.+++|+|++.+|++|+.||.|++|++
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 4322 234567999999999999999999999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=240.50 Aligned_cols=254 Identities=21% Similarity=0.273 Sum_probs=212.2
Q ss_pred eeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 78 DIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.....+|.+.|+.++..+. ...|++++.|..+.+|++.......-.. .....+|...|..+..+++|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~----------~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP----------VRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce----------eeeeeccceEecceEEccCCce
Confidence 3456778889999999886 5788899999999999998763221111 1112357778999999999999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccce
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGI 234 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v 234 (409)
.++++.|+.+++||+.+++..+.+.+|...|.+++|+ ++...+++|+.|.+|++|+. .+.+..++..+ .+.|
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHREWV 151 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcCcE
Confidence 9999999999999999999999999999999999999 89999999999999999996 45555555444 7899
Q ss_pred eEEEEcCC--CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 235 TFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 235 ~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
+++.|+|+ ..+|++++.|++|++||+++ .+....+.+|.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~----------------------------------~~l~~~~~gh~----- 192 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRN----------------------------------CQLRTTFIGHS----- 192 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCC----------------------------------cchhhcccccc-----
Confidence 99999998 67999999999999999998 34455666666
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+..+++||||.+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+++...
T Consensus 193 -~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 193 -GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAV 266 (315)
T ss_pred -ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhh
Confidence 344556899999999999999999999999999988886 888999999999876666664 55699999987643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=273.77 Aligned_cols=298 Identities=21% Similarity=0.333 Sum_probs=253.2
Q ss_pred cCCCceeecCCCCeEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 30 VNGPWKVDGMNSRVYTSQF-SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~-s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
......+.|..+.|..+.| .|+.++||+++..+.+++|+..+.... ...+|+..|.++....+|-+|++|+.|.+
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCce
Confidence 3344567799999999998 678899999999999999998876443 45678889999996667789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCee-----ee----
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKC-----SL---- 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~-----~~---- 178 (409)
+++|.++++...... .....+|...|.+++++..+ ..|++++.|.++++|++...+. ..
T Consensus 389 vilWr~~~~~~~~~~-----------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLC-----------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEEEEecCCcchhhh-----------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 999999544332211 11224678889999998754 5789999999999999976221 11
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
....|...|++++++ |+..++++|+.|.+.+||++. .......+.+|...|.++.|+|..+.+++++.|++|+||
T Consensus 458 t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 458 TERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 225799999999999 899999999999999999964 888999999999999999999999999999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
.+.+ ..++.++.||. ..+....|-.+|+.|++++.||-++
T Consensus 533 ~is~----------------------------------fSClkT~eGH~------~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 533 SIST----------------------------------FSCLKTFEGHT------SAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred Eecc----------------------------------ceeeeeecCcc------ceeEeeeeeeCCcEEEeccCCCcEE
Confidence 9998 56788999998 4455556777899999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++++++++.++..|...|++++-++...+++||+.||.|.+|.=.+.
T Consensus 573 lWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 573 LWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999999999975443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=276.36 Aligned_cols=236 Identities=21% Similarity=0.336 Sum_probs=207.5
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecC-------------------------------CCceeecCCCCeEEEEEC
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVN-------------------------------GPWKVDGMNSRVYTSQFS 49 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~-------------------------------~~~~l~~h~~~v~~~~~s 49 (409)
-.|..||+|+..+|.+. ...+|.+.|.+ ...++.||.++|+.+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 35889999999877754 34555554311 113588999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH 129 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 129 (409)
|+.++|+++|.|+++++|.+++...+. ...+|..+|..+.|+|.|-++|+++.|++.++|........+...
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa----- 532 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA----- 532 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-----
Confidence 999999999999999999999875444 355788899999999999999999999999999998765443332
Q ss_pred eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
+|-..|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.+|.++|++++|+ |+|.+|++|+.||.|
T Consensus 533 ----------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 533 ----------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLI 601 (707)
T ss_pred ----------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc-CCCceEeecccCCcE
Confidence 455679999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+||+. .+..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..
T Consensus 602 ~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999964 8899999999999999999999999999999999999999876
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=260.36 Aligned_cols=276 Identities=21% Similarity=0.301 Sum_probs=229.1
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.|.|+||-+.+++.. .+|.-....-...++.|..+|.++.|+++|.++++|+.+|.|++|+..-+ .++.. .
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~--~ 176 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKII--Q 176 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHh--h
Confidence 458899999876664432 34444444445678899999999999999999999999999999997654 22221 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
..|...|++++|+|+...+++++.||+|+|||....+...... +|...|.+++|+|...++++|+
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~---------------GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR---------------GHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec---------------cCCCCcceeccCCccceeEEcc
Confidence 2344689999999999999999999999999998776544432 4566799999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|..|++||.+++.++.++.+|...|..+.|+ +++++|++++.|..++++|+| ..+.+..+++|...++++.|+|
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR----~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIR----TMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehh----HhHHHHHhhcchhhheeecccc
Confidence 99999999999999999999999999999999 888999999999999999987 6778888999999999999999
Q ss_pred -CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 242 -DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 242 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
...+|.+|+.||.|..|.+...+... ..-.+|. ..+|+++
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~---------------------------------~i~~AHd------~~iwsl~ 357 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLG---------------------------------EIPPAHD------GEIWSLA 357 (464)
T ss_pred ccccceeeccCCCceEEEecccccccc---------------------------------CCCcccc------cceeeee
Confidence 45688899999999999987321111 1112233 6789999
Q ss_pred ecCCCCEEEEEeCCCeEEEEEc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
|.|-|.+|++|+.|.++++|.-
T Consensus 358 ~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 358 YHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccceeEeecCCCcceeeecc
Confidence 9999999999999999999975
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=244.42 Aligned_cols=307 Identities=14% Similarity=0.169 Sum_probs=245.7
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
......+..|+..|.+++.+|+.+++|||+.|..-.+|++.++... ....+|+..|+++.|+.+|.+||+|..+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 3455688999999999999999999999999999999999998633 3466778899999999999999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEE
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNT 189 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~ 189 (409)
+||+..++........ .-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++
T Consensus 131 ~v~~~stg~~~~~~~~---------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQ---------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EEEEcccCceEEEeec---------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999998875443320 1124888999999999999999999999999998888899999999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
=.|. |+|+.++++..||+|++|++. ++.++..+... .....++.++..+..++.|..++.+++-+..+++....
T Consensus 196 G~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 196 GEFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 9999 789999999999999999975 66666665532 34567888888899999999999998888766432221
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
... ........+. ....++-+..+|..=.+.|+|+-||+|.|||+...++.
T Consensus 271 ~n~--------------------------~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 271 NNG--------------------------TVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred cCC--------------------------CCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 110 0000001111 11122223344555678999999999999999988887
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..+. |..+|+.+.|-+ ..+|++++.||.|+.||.+++...
T Consensus 322 ~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 322 HICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred eecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 7776 888999999998 689999999999999999988654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=234.59 Aligned_cols=290 Identities=19% Similarity=0.305 Sum_probs=238.9
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
+..|+||..+++.+.|+.+|.+|.+++.|.++.||-..+++.+.. ..+|.+.|.++..+.+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 467899999999999999999999999999999999888866654 67788899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEECC-------CCeeeeEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQ-------ANKCSLRI 180 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~-------~~~~~~~~ 180 (409)
|++++++........ +|..+.|+++|++++.... .+.|.++|++ +.++...+
T Consensus 80 Dv~tGk~la~~k~~~----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred EcCCCcEEEEeecCC----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 999998765554433 6999999999998887654 4689999997 55677888
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
+.+.+.++.+-|. +-+++|++|..||.|.+||++ .....+.....|...|+.+.+++|..++++++.|.+-++||+
T Consensus 144 ~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~---~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 144 PTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR---TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred cCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc---cCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 8899999999999 889999999999999999986 123556666789999999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe----
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS---- 336 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---- 336 (409)
++.+ .++++... ..+.+.+++|....++.|+....
T Consensus 220 ~tl~----------------------------------v~Kty~te-------~PvN~aaisP~~d~VilgGGqeA~dVT 258 (327)
T KOG0643|consen 220 RTLE----------------------------------VLKTYTTE-------RPVNTAAISPLLDHVILGGGQEAMDVT 258 (327)
T ss_pred ccee----------------------------------eEEEeeec-------ccccceecccccceEEecCCceeeeee
Confidence 8843 23333332 23344467776777776654322
Q ss_pred ----------EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 337 ----------VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 337 ----------v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 23333333455778899999999999999999999999999999987654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=235.68 Aligned_cols=293 Identities=22% Similarity=0.321 Sum_probs=245.2
Q ss_pred CCCceeecCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 31 NGPWKVDGMNSRVYTSQFSN---DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
+.+.+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.. ..+|.+.|.+...+.+...-|+++.|=
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccc
Confidence 45678889999999999975 899999999999999888888754444 566778999999998888889999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~ 186 (409)
+-++||.-++....... |..-|.+++|+.|.++|++|+.+..++|+|++..+ +...+.+|.+.
T Consensus 82 takvw~a~tgdelhsf~----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhhh----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 99999998887644433 33359999999999999999999999999998754 45678899999
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
|..+.|+ ...+.|++.+.|++|++||.| ++..++.+. .+.+|+++.++++|++|.++ ..+.|.+||..+..
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-- 216 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc--
Confidence 9999999 777888888999999999987 777777765 46789999999999866554 55679999988732
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.++.++.. ..+.+..++|+...+++|++|+.++.||..+++
T Consensus 217 --------------------------------~lKs~k~P-------~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 217 --------------------------------LLKSYKMP-------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------------------------ceeeccCc-------cccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 23333222 223455688899999999999999999999999
Q ss_pred eEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 QVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 ~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+..+ ++|.++|.++.|+|||...++||.||+|++|.....+..
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99886 899999999999999999999999999999998765543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=258.62 Aligned_cols=286 Identities=18% Similarity=0.243 Sum_probs=247.1
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++..|+..|.++.|+|...+++++-.+|.|.|||.++...+....... -+|.+..|-+..+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEe
Confidence 4566799999999999999999999999999999999986655543333 3899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~ 192 (409)
..+.+....+. .|..-|.+++.+|...++++++.|-.|++||.+.+ .+.+++.+|...|.+++|
T Consensus 84 ynt~ekV~~Fe---------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 84 YNTGEKVKTFE---------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred cccceeeEEee---------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 99887543332 34557999999999999999999999999999765 567889999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|.+.+.+++++-|++|++|.+ .+..+..++.+|...|+++.+-+.| .+|++|+.|..+++||..+
T Consensus 149 nPkD~ntFaS~sLDrTVKVWsl----gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-------- 216 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSL----GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-------- 216 (794)
T ss_pred cCCCccceeeeeccccEEEEEc----CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------
Confidence 9999999999999999999996 4778889999999999999998754 5999999999999999998
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
..++++++||..... ...|.|.=.++++|++||+|+||+..+-+...+
T Consensus 217 --------------------------k~CV~TLeGHt~Nvs------~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 217 --------------------------KSCVQTLEGHTNNVS------FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred --------------------------HHHHHHhhcccccce------EEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 567888888884333 335777778999999999999999999888888
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
+.-.-+.|++++-.+.+..++.|...|.|.+
T Consensus 265 Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 265 LNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 8877889999998888888888877776643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=257.08 Aligned_cols=346 Identities=18% Similarity=0.176 Sum_probs=270.6
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.|++-++|...+|.+-.+ .++.........++.||..+|+++.|+..|..||+||.|+.|.+||+-...... .+
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL 145 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RL 145 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---Ee
Confidence 467777888777764444 344444445677999999999999999999999999999999999997654443 46
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece-----------------ee-----eeeeecCCC
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI-----------------HK-----GLDFSADGD 139 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~ 139 (409)
.+|...|+.+-|..+.++|++.+.|+.|++||+.+..+......... .. .+.+..+..
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~ 225 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEK 225 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccc
Confidence 77888999999998889999999999999999987553211100000 00 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015301 140 -------------------------------------------------------------------------------- 139 (409)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (409)
T Consensus 226 ~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~ 305 (888)
T KOG0306|consen 226 ETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEK 305 (888)
T ss_pred cccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhh
Confidence
Q ss_pred -----------------------------------------------------------------CcceeeEEEEEcCCC
Q 015301 140 -----------------------------------------------------------------EDEFGIFSVKFSTDG 154 (409)
Q Consensus 140 -----------------------------------------------------------------~~~~~v~~~~~~~~~ 154 (409)
+|...|.+++++.+.
T Consensus 306 sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~ 385 (888)
T KOG0306|consen 306 SLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS 385 (888)
T ss_pred hHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc
Confidence 677889999999888
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
..+++|+ .+.+.+|+..+.++++++.. ..+.+..|. |.++++++|...|.+.+||+. ....+...++|.+.|
T Consensus 386 ~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 386 ILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAI 457 (888)
T ss_pred eeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhccccce
Confidence 7777665 57899999999999999975 388999999 889999999999999999964 777888888999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.+++.+||++.+++++.|.+|++||+.-....... ...+..+ .|........
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt---------------------------~~k~lsl-~~~rtLel~d 509 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT---------------------------QKKVLSL-KHTRTLELED 509 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc---------------------------cceeeee-ccceEEeccc
Confidence 99999999999999999999999998652210000 0011111 1122223334
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
-+.++.+||||++||++-.|.+|+||-+.+.+....+.||.-||.+|..|||+++++|||.|.+|++|-++-+.-
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 566778999999999999999999999999999999999999999999999999999999999999999876654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=244.15 Aligned_cols=287 Identities=22% Similarity=0.322 Sum_probs=242.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee------cccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE------TKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
|..+.+-|..|||||++|++|+.||-|.+||..+++ +.+.+. .--++.+|.|+.|+.|...||+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK-lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK-LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccch-hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 566778999999999999999999999999998873 222222 2235568999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|.+.++.+...+.. .|..+|+++.|+.|+..+++++.|.++++.-+++|+++..+++|.+.|+...
T Consensus 290 Wri~tG~ClRrFdr--------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEecchHHHHhhh--------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 99999987554331 3555899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
|. ++|+.+++++.||+|++|+.+ +..++.+++.. .-+|.++..-| +...++++...+++.+.++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 99 999999999999999999954 67777666543 34677777666 456889999999999999864
Q ss_pred ccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+.+..+.... .... ..+...||.|.++.+.++|+.++.|.+.+|+.
T Consensus 425 -----------------------------QvVrsfsSGkREgGd----Fi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 -----------------------------QVVRSFSSGKREGGD----FINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----------------------------eEEeeeccCCccCCc----eEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 4455554332 2222 22345788899999999999999999999999
Q ss_pred EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
..++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999995
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=236.22 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=236.9
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC---------------eeeeeeeecccccceEEEEEeCCCCc
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSPDQR 98 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 98 (409)
..+..|++++.+-+|||||.++|||+.|..|+|.|++.. .....+..+..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 467899999999999999999999999999999998721 11122334556788999999999999
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 178 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 178 (409)
.|++++.|++|++||+.........+.... ..+|.++.|+|.|.+|++|.....+++||+++-++..
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd-------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhc-------------cceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 999999999999999987665444433221 2269999999999999999999999999999987755
Q ss_pred EE---cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccc-cceeEEEEcCCCCeEEEEeCCC
Q 015301 179 RI---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHL-EGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 179 ~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg 253 (409)
.- ..|.+.|+++.++ +.+++.++++.||.|++|| ....+++..+. .|. ..|.+..|..+++++++.+.|.
T Consensus 253 sanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwD----GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWD----GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred ecCcccccccceeEEEec-CCccEEEEeccCCcEEeec----cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 43 4699999999999 8999999999999999999 55777777664 344 4688899999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 333 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 333 (409)
.+++|.+.+ ++.+..+.+....... .......|.....+++.-.+
T Consensus 328 ~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 328 TVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred eeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEcccc
Confidence 999999988 4445555443211100 01111224444566665544
Q ss_pred -CCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 334 -DNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 334 -dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.+.+.-||.++...+..+ -+|++.+..+.-||.+..+++|+.|-.+++|--.
T Consensus 373 as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 478999999998766555 3799999999999999999999999999999643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=244.60 Aligned_cols=274 Identities=24% Similarity=0.333 Sum_probs=228.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
....|+|+++. ...+++|..|++|+|||..+-+... .+.+|.+.|.|+.|. .+.|++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 45679999996 3569999999999999988764444 356788899999985 5699999999999999999998
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee---eeEEcCCCCCeEEEEEeCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~ 195 (409)
.....- .|...|..+.|+ ..++++++.|.++.+||+.+... ...+.+|...|+.+.|+
T Consensus 269 ~l~tli---------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 269 PLNTLI---------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-- 329 (499)
T ss_pred hhhHHh---------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--
Confidence 754432 345579999995 45899999999999999987653 34568999999999997
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
.+++++++.|.+|++|++ .+...+..+.+|...|.|+.+. ++++++|+.|.+|++||+..
T Consensus 330 -~kyIVsASgDRTikvW~~----st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~------------- 389 (499)
T KOG0281|consen 330 -DKYIVSASGDRTIKVWST----STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC------------- 389 (499)
T ss_pred -cceEEEecCCceEEEEec----cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccc-------------
Confidence 459999999999999995 4899999999999999999885 89999999999999999998
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc---------
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------- 346 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------- 346 (409)
+.++..++||......+ .| |.+.+++|..||+|++||+..+.
T Consensus 390 ---------------------G~cLRvLeGHEeLvRci------RF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~ 440 (499)
T KOG0281|consen 390 ---------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTL 440 (499)
T ss_pred ---------------------cHHHHHHhchHHhhhhe------ee--cCceeeeccccceEEEEecccccCCcccccch
Confidence 67888999998654443 33 56889999999999999998764
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++.++..|.+.|..+.| |...+++++.|.+|.+||+.++..
T Consensus 441 Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 441 CLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred HHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 24455679999999999 456899999999999999977654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=228.93 Aligned_cols=278 Identities=19% Similarity=0.330 Sum_probs=234.8
Q ss_pred ceeeEEecCceeEeeccce---EEEE-eeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSR-YLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~-~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+-.+.|+|||.++++++.+ ++|. +-..+...++++|+++|..+.|.+|++.+++++.|.+++.||.++++...+
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk-- 127 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK-- 127 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh--
Confidence 3568999999999997765 4454 334455679999999999999999999999999999999999999966654
Q ss_pred ecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
+..|...|+++.-+.-| .++.+++.|+++++||+++.+....... ..+++++.|..++..+.
T Consensus 128 -~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~----------------kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 128 -HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN----------------KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred -hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc----------------ceeEEEEEeccccccee
Confidence 66777788888855445 4566788999999999998766544322 22699999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc----ce
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE----GI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v 234 (409)
+|+-|+.|++||++.+.....+.+|.++|+.+..+ +++.++.+-+.|.++++||+|.......++..+.+|.. ..
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 99999999999999999999999999999999999 89999999999999999999987777787888877653 34
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
..++|+|+++.+.+++.|..+++||... ...+..+.+|. .
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~----------------------------------r~~lyklpGh~------g 309 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS----------------------------------RRILYKLPGHY------G 309 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc----------------------------------ccEEEEcCCcc------e
Confidence 5678999999999999999999999877 45677788887 4
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.+...+|.|...+|.+++.|.+|++=.
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeEeec
Confidence 455668999999999999999998743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=225.47 Aligned_cols=279 Identities=18% Similarity=0.305 Sum_probs=235.4
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
..+++|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999999999999999999999999987 4445556778888899999988 46789999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+..+++........ .=.-+.|+|+|.++++++.|..|...|.++.+.+...+ ....+..++|
T Consensus 93 d~r~~k~~~~i~~~~----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w 155 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISW 155 (313)
T ss_pred EeccCcEEEEeeccC----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeee
Confidence 999988654433222 23457899999999999999999999999888776655 4567888999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+ .++++++.....|.|.|... ...+++..+..|.....+|.|+|+|++|++|+.|-.+.+||+...-|
T Consensus 156 ~-~~nd~Fflt~GlG~v~ILsy----psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC------- 223 (313)
T KOG1407|consen 156 N-NSNDLFFLTNGLGCVEILSY----PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC------- 223 (313)
T ss_pred c-CCCCEEEEecCCceEEEEec----cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-------
Confidence 9 77788887777899999985 48889999999999999999999999999999999999999987433
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
++.+..+. -.+..+.||-||++||+|++|..|-|=++++|..+..++
T Consensus 224 ---------------------------~R~isRld------wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 224 ---------------------------ERCISRLD------WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ---------------------------heeecccc------CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 23333332 223345788999999999999999999999999999998
Q ss_pred cCCcceeeeEEecCcCeEEeecCC
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+.++-..++|+|...+||-++.|
T Consensus 271 -~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 271 -CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -ccCCceeEEecCCCceeeEEecC
Confidence 78899999999999999887765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=248.76 Aligned_cols=317 Identities=20% Similarity=0.282 Sum_probs=243.5
Q ss_pred EEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeeeeeecccccceEEEEEeCCCCcEE
Q 015301 25 SRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 25 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
...+|......+.+|+..|.++++.|.|..|++|+.|.+|++||+.... ....+.....| .|.++.|++.+..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence 3456777778999999999999999999999999999999999987542 11222233344 79999999999999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCee-ee
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKC-SL 178 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-~~ 178 (409)
++.+.....+|+|-...+.....+-..- +.-.....+|...+++.+|+|. ...+++++.||++++||+...+. ++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY---I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY---IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh---hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 9999899999999876554322221111 1112234588999999999994 45789999999999999976543 22
Q ss_pred EE-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCCeEEEEeC
Q 015301 179 RI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 179 ~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~ 251 (409)
.+ .+..-+++.++|+ +++++||+|+.||.|.+|+.+... .......-..|.. .|+++.|+++|++|++-+.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 23 2344578999999 899999999999999999975221 1223344456776 8999999999999999999
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
|+++++||++.... ++..+.+-...... ...+|||+.++|++|
T Consensus 385 D~tLKvWDLrq~kk---------------------------------pL~~~tgL~t~~~~----tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKK---------------------------------PLNVRTGLPTPFPG----TDCCFSPDDKLILTG 427 (641)
T ss_pred CCceeeeecccccc---------------------------------chhhhcCCCccCCC----CccccCCCceEEEec
Confidence 99999999998542 33333333222222 233688999999998
Q ss_pred eC------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 332 SS------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 332 ~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+. .|.+.+||..+.+.++.+.-....|..+.|+|.-+.|+.++.||.+++|-=+
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 75 4789999999999999998888899999999999999999999999987433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=262.04 Aligned_cols=279 Identities=25% Similarity=0.361 Sum_probs=226.1
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
..|+.||+||+++++.... .++...... ....+.+|...|.+++|+|+++++++++.|++|+|||+.......+
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~- 240 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK- 240 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-
Confidence 4678999999998876544 333332223 4456789999999999999999999999999999999944323222
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
...+|...|++++|+|+++.+++|+.|++|++||+++++...... +|..+|.+++|++++++|+
T Consensus 241 -~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 241 -TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------GHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred -EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------ccCCceEEEEECCCCCEEE
Confidence 345788899999999999999999999999999999866543332 4566899999999999999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+++.|+.|++||+.++. +...+..+... +++++|+ +++.++++++.|+.+++||++ .........+|...+
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLV 379 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcc
Confidence 99999999999999998 55667666555 9999999 999999999999999999975 777788888887753
Q ss_pred ---eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceee
Q 015301 235 ---TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT 311 (409)
Q Consensus 235 ---~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (409)
.+...++.+.++++++.|+.|.+||+.+ ...+..+.+|.
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s----------------------------------~~~~~~l~~h~---- 421 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS----------------------------------GGILQRLEGHS---- 421 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCc----------------------------------cchhhhhcCCC----
Confidence 3444577899999999999999999987 34556666663
Q ss_pred eeEEEEeeeecCCCCEEEEEe--CCCeEEEEEcc
Q 015301 312 LIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLV 343 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~--~dg~v~i~d~~ 343 (409)
...+..+.++|..+++++++ .|+.+++|...
T Consensus 422 -~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 -KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 13344567888899999998 68999999753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=222.18 Aligned_cols=248 Identities=21% Similarity=0.301 Sum_probs=215.6
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....++++|.++.|+-+|+|.++++.|.+|++|+...+....... +|...|..++.+.|...|++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs---------------ghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS---------------GHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec---------------CCCceeeecccccccccccc
Confidence 345677899999999999999999999999999998876543332 56668999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
|+.|..+.+||+++|+..+.+.+|.+.|+.++|+ .+...+++|+.|.++++||.| ....++++.+....+.|.++..
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCR--S~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCR--SRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcc--cCCCCccchhhhhcCceeEEEe
Confidence 9999999999999999999999999999999999 899999999999999999998 5677888889888999999988
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+ +..|++|+.||+++.||++.+ .....+-+++ +.+.
T Consensus 154 ~--~heIvaGS~DGtvRtydiR~G----------------------------------~l~sDy~g~p--------it~v 189 (307)
T KOG0316|consen 154 A--EHEIVAGSVDGTVRTYDIRKG----------------------------------TLSSDYFGHP--------ITSV 189 (307)
T ss_pred c--ccEEEeeccCCcEEEEEeecc----------------------------------eeehhhcCCc--------ceeE
Confidence 6 667999999999999999983 3333333333 4566
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce--eeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV--RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.|++|++.+++++.|+++++.|-.+|+.+..+++|...- ...+++.....+++|++||.|++||+.+...
T Consensus 190 s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 190 SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred EecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 899999999999999999999999999999999997654 4456777777999999999999999987654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=238.46 Aligned_cols=256 Identities=23% Similarity=0.350 Sum_probs=217.3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|..+|+.+-|+|+-...++++.|++|++||..+++...... +|...+.+++|+..|++++++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr---------------GHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR---------------GHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------------ccccceeEEEEecCccEEEec
Confidence 44577899999999999999999999999999999998743322 566679999999999999999
Q ss_pred EecCeEEEEECCC-CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 161 GSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 161 ~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
+.|-.+.+||.++ .+++..+.+|...|.+++|. |.++++++++.|.+|+.|++. ++.++..+.+|...|..+..
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEEEe
Confidence 9999999999987 56677788999999999999 778999999999999999964 89999999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe-
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS- 318 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (409)
+.||.++++++.|.++++|-+.+.++. ..++.|.....+......
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap~~ 289 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAPES 289 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEecccc
Confidence 999999999999999999999885433 333344332222221110
Q ss_pred --eeec------CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 319 --PEYS------TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 319 --~~~s------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+..+ ..+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+++++||+.+....
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 0000 12469999999999999999999999999999999999999999999999999999999999887543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=249.87 Aligned_cols=287 Identities=21% Similarity=0.285 Sum_probs=245.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||...|.++++|.+...+++|+ .+.+++|+.++.+++...... .+.+..|-|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 46789999999999999988888876 467999999988776654322 588899999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-----Cee--eeEE-----c
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-----NKC--SLRI-----P 181 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~--~~~~-----~ 181 (409)
+.+........ .|.+.+++++.+||++.+++|+.|.+|++||..- +.. +..+ -
T Consensus 441 laS~~l~Eti~---------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 441 LASASLVETIR---------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred eehhhhhhhhh---------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 98776433222 4566899999999999999999999999999742 111 1111 1
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.-...|.|+.++ |++.+|+++--|.+|++|-+. +.+....+.+|.-||.++..+||++.+++|+.|.+|++|-+.
T Consensus 506 el~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 506 ELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 245789999999 999999999999999999865 778888899999999999999999999999999999999987
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
- +.+-+.+-+|. ..+.++.|-|...++++++.|+.|+-||
T Consensus 581 F----------------------------------GDCHKS~fAHd------DSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 581 F----------------------------------GDCHKSFFAHD------DSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred c----------------------------------chhhhhhhccc------CceeEEEEcccceeEEEecCcceEEeec
Confidence 6 45556666666 3445667888899999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
-...+.+..+.+|...|++++.+|+|.+++++|.|..|++|+-..
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999999999999999999998765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=230.69 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=233.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~~ 111 (409)
.-.-|.+.|.++... ++++++|+.||.+++||.... .. ....+|.++|.+++|.-. ...+++++.|.++++
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SI---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eE---EEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 334589999999888 689999999999999998765 32 235567789998888543 346999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-------------------
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ------------------- 172 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------- 172 (409)
|.++.++........ ..+|...|.+++..++|..+++|+.|..|.+|+.+
T Consensus 174 w~~~~~~~~~~~~~~-----------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 174 WKWNVGENKVKALKV-----------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCchhhhhHHhH-----------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 999877643222211 12678899999999999999999999999999932
Q ss_pred ------CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 173 ------ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 173 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
++.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+.....+.+ ...+.++.++|..++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccccee
Confidence 123455678999999999998 3 7789999999999999974 6666665553 5678999999999999
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQ 325 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~ 325 (409)
++|+.|..+++||.+++.. ......+.+|.. .+.++.++| +.
T Consensus 316 ~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~n------wVssvkwsp~~~ 358 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKN------WVSSVKWSPTNE 358 (423)
T ss_pred eecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchh------hhhheecCCCCc
Confidence 9999999999999998432 123466778874 233445555 44
Q ss_pred CEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 326 KYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+|++|+.|+++++||+++.+ ++..+.+|...|.++.|+. +.++++||.|.+|+++.-..
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 678899999999999999987 9999999999999999974 66999999999999987543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=244.81 Aligned_cols=302 Identities=21% Similarity=0.287 Sum_probs=246.5
Q ss_pred ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE
Q 015301 21 CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
..++..-+|......+..|.+.+..+.|-++...|++|+.|..|++|+..... ......+.+..++|+++.|.++++.+
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 45677778888889999999999999999998999999999999999987764 22223344555689999999999999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 180 (409)
++++.|+.+++|++...+...... +|...|+++.|......+++|+.|.+|++||+....+..++
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs---------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS---------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc---------------ccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 999999999999998876543332 56668999999887777999999999999999998877765
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
. ..+.+.+++.. ...+++|..|++|++||.| ...+......+. .|+++..++++..+++++.|.++.+.|+
T Consensus 300 l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred c-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 4 34556777765 5678899999999999977 666667666654 8999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
++.+.. ..+..... ....-.....|||++.|+++|+.||.|+||
T Consensus 371 Rt~eI~----------------------------------~~~sA~g~--k~asDwtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 371 RTKEIR----------------------------------QTFSAEGF--KCASDWTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred ccccEE----------------------------------EEeecccc--ccccccceeEECCCCceeeeccCCCcEEEE
Confidence 984322 22222110 000113345699999999999999999999
Q ss_pred EccCCceEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 341 DLVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999888876544 599999999999999999999999993
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=220.04 Aligned_cols=297 Identities=17% Similarity=0.278 Sum_probs=236.8
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec--CCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI--CAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~ 110 (409)
...+....+.|+++.|+++|.+|++++.|.+++|||..++.....+... +..+..++|......++.++. |.+|+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---KYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---cccccEEEEecCCceEEEccCCCCCceE
Confidence 3455567889999999999999999999999999999999766654433 236888899887777777775 88999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
..++.+.+..+... +|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..+
T Consensus 84 yLsl~dNkylRYF~---------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~ 146 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFP---------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIA 146 (311)
T ss_pred EEEeecCceEEEcC---------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--Ccce
Confidence 99999887654433 677789999999999999999999999999999888777664333 3457
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+|. |.|-++|++.....|++||+|......-....+. +.....+.+.|+|||++|+.+...+.+.+.|.-+
T Consensus 147 AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~------- 218 (311)
T KOG1446|consen 147 AFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD------- 218 (311)
T ss_pred eEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence 888 8999999998888999999995533322222222 3456789999999999999999999999999766
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+.....+.++....... .+..|+||++++++|+.||+|.+|++++++.+.
T Consensus 219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 44455666555433222 344689999999999999999999999999999
Q ss_pred Eecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+++ +.+++.++.|+|...+++|++ ..+.+|=....+.
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 9998 689999999999877777774 5788897665443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=221.69 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=222.0
Q ss_pred EEEEECC--CCCEEE-EE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEc
Q 015301 44 YTSQFSN--DGSFFV-AA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDV 114 (409)
Q Consensus 44 ~~~~~s~--~~~~l~-t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~ 114 (409)
+++.||| ++++.+ ++ ...|++.|.++.....+....... -...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 6788998 333322 22 135889999987554554433332 2347999999996 567888899999999995
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..... +.... ++|..+|.++.|++ ++..+++++.|++|++|+...++.+.++.+|...|...+|+
T Consensus 91 ~~~s~-Pi~~~-------------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 91 TMPSK-PIHKF-------------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred CCCCc-chhHH-------------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 43322 11111 25666899999998 56678888999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
|..++++++++.|+++++||+|. .++.+. +..|...+.++.|+. +...+++|+.|+.|+.||+++..
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------- 224 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------- 224 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------
Confidence 99999999999999999999982 344444 888999999999987 56688999999999999999854
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCC-ceEEE
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSG-AQVAK 350 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~-~~~~~ 350 (409)
.++..+.+|.. .+..+.+||. ..+||+++.|-+++|||...+ ..+.+
T Consensus 225 -------------------------~pl~eL~gh~~------AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 225 -------------------------TPLFELNGHGL------AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred -------------------------ccceeecCCce------EEEEEecCcchhhHhhhccccceEEecccccchhhhhh
Confidence 34566677762 3334456664 468999999999999999854 45677
Q ss_pred eccCCcceeeeEEecCcC-eEEeecCCCeEEEEec
Q 015301 351 LDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEI 384 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~ 384 (409)
...|...|..+.||+-.. ++|+++.|+.++||+.
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccceEEeccccccccCceeeecccccceeeecc
Confidence 778999999999998644 9999999999999984
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=233.99 Aligned_cols=247 Identities=21% Similarity=0.277 Sum_probs=219.3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|.+.|.++++.|.+.++++|+.|++++|||+.+++...... +|...|..+++++-..|++++
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt---------------Ghi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT---------------GHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec---------------chhheeeeeeecccCceEEEe
Confidence 45788899999999999999999999999999999997644332 455579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|+.||++..+.++.+.+|-+.|.|++.+ |.-+.|++|+.|.++++||+| ....+..+.+|..+|.++.+.
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEEee
Confidence 999999999999999999999999999999999 788899999999999999987 788899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|-...+++|+.|++|++||++. ++...++..|. ..+.+++
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hk------ksvral~ 326 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHK------KSVRALC 326 (460)
T ss_pred cCCCceEEecCCceEEEeeecc----------------------------------CceeEeeeccc------ceeeEEe
Confidence 9888899999999999999998 55566666666 3334556
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..|....+|+++.|. |+-|++..++.+..+.+|..-|++++...|+ ++++|+++|.+.+||..++-.
T Consensus 327 lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 327 LHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 778888899988875 8999999999999999999999999998765 788999999999999987643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=215.64 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=217.9
Q ss_pred eeeEEecC-ceeEeeccceEEEEeeecCC--Ccee-----ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 5 REVNYSGR-GRFSAADSCHVLSRYLPVNG--PWKV-----DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 5 ~~~~~s~d-g~~~~~~~~~~~~~~~~~~~--~~~l-----~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
=.++|+|- |..+++++.....+.+.... .+.. .+|+..|..++|+|.|++||+||.|.++.||.-..+ ...
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-efe 96 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EFE 96 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-cee
Confidence 35889998 88888888776666555553 2222 379999999999999999999999999999997755 444
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
......+|...|.+++|+++|++||+++.|..|-+|.+..+...... ....+|...|..+.|+|...+
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~------------aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI------------AVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE------------eeeccccccccEEEEcCCcce
Confidence 45667889999999999999999999999999999999855432222 222356778999999999999
Q ss_pred EEEEEecCeEEEEECC---CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 157 LVAAGSDNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
|++++.|.+|++|+-. .-++++++.+|...|.+++|. +.|+.|++++.|++++||... ......|..+
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~--------~~~~~~~sr~ 235 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLY--------TDLSGMHSRA 235 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeec--------cCcchhcccc
Confidence 9999999999999876 346788999999999999999 889999999999999999953 1112347788
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee-eeecccceeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRTL 312 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 312 (409)
+..+.|. ...|++++.|+.|++|.-......+.. ..+. .-..|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~----------------------------~l~~~~~~aHe----- 280 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSW----------------------------NLLAKKEGAHE----- 280 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchH----------------------------HHHHhhhcccc-----
Confidence 9999998 457999999999999976531111100 0011 112233
Q ss_pred eEEEEeeeecCC-CCEEEEEeCCCeEEEEEcc
Q 015301 313 IRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 313 ~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~ 343 (409)
.-+.+++|.|. .++|++|+.||.|++|.+.
T Consensus 281 -~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 -VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 13345567774 6899999999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=237.17 Aligned_cols=289 Identities=17% Similarity=0.216 Sum_probs=229.6
Q ss_pred cCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 38 GMNSRVYTSQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
...+.|.+++|||...+ +|+.+. -.+.||+..+.........+.. .+.++.|-.||++||+|...|.|++||..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~---~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKD---VVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhcc---ceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34578999999996543 444443 4599999887655444444444 799999999999999999999999999655
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
....... ..|+.++..+.|+|+ +..+++|+.|+.+++||+.+......+.+|++.|.|.+|+|.
T Consensus 100 r~iLR~~---------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 100 RVILRQL---------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHHHHHH---------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence 3222111 145668999999995 556778888999999999998876688999999999999988
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++.++++|+.||.|++||+|. .. ..+.. ..|..+|..+.+-|.|..+++++.. .+++||+.++.
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~--~~-~~v~e-lnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRS--LT-SRVVE-LNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG----------- 228 (487)
T ss_pred CCeEEEecCCCceEEEEEecc--CC-ceeEE-ecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc-----------
Confidence 899999999999999999882 12 33343 4589999999999999999988765 69999998632
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
+.+..+..|. ..++++.+..++..|++|+.|+.|++||+.+.+.+..+. ..
T Consensus 229 ----------------------qll~~~~~H~------KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~ 279 (487)
T KOG0310|consen 229 ----------------------QLLTSMFNHN------KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YP 279 (487)
T ss_pred ----------------------eehhhhhccc------ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cc
Confidence 3333444354 345566777789999999999999999999999999987 67
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
++|.+++.+|+++.++.|-.||.+.+=+....+++
T Consensus 280 ~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 89999999999999999999999888765554443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=255.90 Aligned_cols=294 Identities=18% Similarity=0.250 Sum_probs=246.8
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+..-+.+|..++|+|...+++++-..|.|++||..-+..+.+ ...|+++|..++|+|.+.++++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 445567899999999999999999999999999987755554 55678899999999999999999999999999999
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+.++..... +|-.-|..+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+ |
T Consensus 82 ~rrclftL~---------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-p 145 (1202)
T KOG0292|consen 82 TRRCLFTLL---------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-P 145 (1202)
T ss_pred cceehhhhc---------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-C
Confidence 887643332 455579999999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeeCCCeEEEeccccccc-------------------------CCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFIS-------------------------KGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
..++++++|-|.+|++||+..... .......+.+|...|+-++|+|.-.++++|+
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 889999999999999999752100 0112345678999999999999999999999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.|..|++|.++..+ .-.+.+.++|... +.++-|+|..+++++
T Consensus 226 DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~nn------Vssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETK--------------------------------AWEVDTCRGHYNN------VSSVLFHPHQDLILS 267 (1202)
T ss_pred CcceeeEEEecccc--------------------------------ceeehhhhcccCC------cceEEecCccceeEe
Confidence 99999999987622 1234556677632 234457888999999
Q ss_pred EeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 331 GSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.++|++|+|||+...+.+++++...+.-+.++-+|..+++++| .|+-+.++.++..
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9999999999999999999998888899999999999877766 5666778877643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=238.20 Aligned_cols=240 Identities=21% Similarity=0.316 Sum_probs=204.8
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.|+.+. ...+++|..|++|++||..+..+..... +|.+.|.|+.| +.+.+++|+.|.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~---------------GHtGSVLCLqy--d~rviisGSSDs 257 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILT---------------GHTGSVLCLQY--DERVIVSGSSDS 257 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhh---------------cCCCcEEeeec--cceEEEecCCCc
Confidence 3469999884 5679999999999999998776543332 67778999999 566999999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
+|++||.++++++.++-+|...|..+.|+ +.++++++.|.++.+||+.... .-.+...+.+|...|+.+.|+ .+
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~k 331 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DK 331 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cc
Confidence 99999999999999999999999999998 5689999999999999986332 334556788999999999996 56
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
++++++.|.+|++|++.+ ...+.++.+|.....+ ..+ .
T Consensus 332 yIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIAC------lQY--r 369 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIAC------LQY--R 369 (499)
T ss_pred eEEEecCCceEEEEeccc----------------------------------eeeehhhhccccccee------hhc--c
Confidence 999999999999999998 5667788888743332 222 5
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
++++++|+.|.+|++||+..|.++..+++|+.-|.++.| |.+.+++|+.||+|++||+.....+..+
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCccc
Confidence 899999999999999999999999999999999999999 4578999999999999999988776544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=249.46 Aligned_cols=239 Identities=27% Similarity=0.310 Sum_probs=178.4
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccc
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
...++.+++.+|+|++|++|..-|.++||++.+-+....+..|...|.|+.|+-|. .++|++++.|..|.+||+.
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--- 534 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK--- 534 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---
Confidence 44568999999999999999999999999999888888889999999999998432 4689999999999999984
Q ss_pred cCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCCCcccccccc--------ccccccccccc-----c
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRKMSSNTTDNS--------RLRDYDWDYRW-----M 283 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~-----~ 283 (409)
.+...+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.++......... ..-++..+..+ .
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 4667778888888888888887666 5677777777654433222111111110 00001111000 0
Q ss_pred cccccceeccccCccceeeeecccce-eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVL-RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
......+.+....++..+.|++.... ...+ .+..+|.|.|||+.+.|.++.++|..+++++.++.+|...|+.+.
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lI----Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLI----KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceE----EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence 11122333444556777777775543 3333 334667799999999999999999999999999999999999999
Q ss_pred EecCcCeEEeecCCCeEEEEecCC
Q 015301 363 WHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|.+|.+.|++.+.||+|.+|.++.
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhheeecCCceEEEEECch
Confidence 999999999999999999999875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=256.62 Aligned_cols=309 Identities=14% Similarity=0.170 Sum_probs=206.8
Q ss_pred eee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--CCCCcEEEEEecCCEEEE
Q 015301 35 KVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~~ 111 (409)
.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+.... +...-.++.+ ...+....+....+.+.=
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV------AEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc------cccccchhhhhhhhccccCccccccccccc
Confidence 455 8999999999999999999999999999999876422111 0001111111 111111111111100000
Q ss_pred EEcCCCccccccceeceeeeeeeec----CCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSA----DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
-.....+........-......|.. ...+|...|.++.|+.++ +|++++.|.+|++|++...+++..+. |...|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCee
Confidence 0000000000000000000011111 123788999999999766 78999999999999999999999887 99999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+|++|+|-|.++|++|+-||.|+||++ ....+.....-..-|++++|.|||+..+.|+.+|.+++|++.......
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 999999999999999999999999997 344445555556889999999999999999999999999998743322
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
... +..-.+.. ....-++...|.| +...|++.+.|..|+|||.++.+
T Consensus 488 ~~~-----------------------------I~~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 488 DFH-----------------------------IRLHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred eee-----------------------------EeeccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 111 10000000 0001123333443 23357788899999999999999
Q ss_pred eEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
++..++++.. .-....|+.||++|+++++|..|++|+.....
T Consensus 536 lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 9999987643 33556899999999999999999999986544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=233.89 Aligned_cols=275 Identities=16% Similarity=0.246 Sum_probs=221.3
Q ss_pred eEEecCceeEeeccce---EEEEeeecCC---CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 7 VNYSGRGRFSAADSCH---VLSRYLPVNG---PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~~---~~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.||++|+|+|+++.+ .+|...+... ..++.||..+|.-+.||||.++|++++.|..+.+||+.++........
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 7899999999997755 4455555544 568899999999999999999999999999999999999965543322
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
++...+.+++|.|||..+++|+.|+.+..||++......-..... ..|.+++..+||+++++.
T Consensus 310 --~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~---------------~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 310 --GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD---------------PKVHDLAITYDGKYVLLV 372 (519)
T ss_pred --CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc---------------ceeEEEEEcCCCcEEEEE
Confidence 245689999999999999999999999999998765332222111 159999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE--EE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF--ID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~ 238 (409)
+.|..|++++.++......+. ...+|++++.+ .+++++++--.+..+++||+. ....+..+.+|...-.- -+
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ecccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEec
Confidence 999999999998776655444 45789999999 999999999999999999974 77778888888765332 23
Q ss_pred EcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|.. +..++++|++|+.|+||+..+ +..+..+.||.. . +.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~s----------------------------------gkll~~LsGHs~--~----vN 486 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRIS----------------------------------GKLLAVLSGHSK--T----VN 486 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccC----------------------------------CceeEeecCCcc--e----ee
Confidence 433 557999999999999999988 788999999982 3 33
Q ss_pred eeeecC-CCCEEEEEeCCCeEEEEEccC
Q 015301 318 SPEYST-AQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 318 ~~~~s~-~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.++++| +..++|+++.||+|+||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 334554 567899999999999998753
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=224.19 Aligned_cols=305 Identities=20% Similarity=0.292 Sum_probs=241.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.||.+.|+.++.......+.+++.|.+.+||.++++.++.. ..+|.+.|++++|++.+.++++++.|++.+||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 35679999999999988888999999999999999999977665 567888999999999999999999999999997
Q ss_pred c------CCCcccccc------ceeceeee-e------------eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 114 V------GSSARESLA------NVTEIHKG-L------------DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 114 ~------~~~~~~~~~------~~~~~~~~-~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
. ......... ...+.+.. . .-.....+|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 211100000 00000000 0 000011368888999999999999999999999999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
||+++++++..+.+|....+.++-+ |...++++.+.|.+.++||.| +.-..+..+.+|.+.|+++.|..+. .+++
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred eeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-ceee
Confidence 9999999999999999999999998 889999999999999999997 4556778899999999999998754 5899
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
|+.|.+|++||++++.. ++.+++.... +..++.+..+..+
T Consensus 374 gSDDrTvKvWdLrNMRs---------------------------------plATIRtdS~-------~NRvavs~g~~iI 413 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRS---------------------------------PLATIRTDSP-------ANRVAVSKGHPII 413 (481)
T ss_pred cCCCceEEEeeeccccC---------------------------------cceeeecCCc-------cceeEeecCCceE
Confidence 99999999999998643 3334333322 2223455567788
Q ss_pred EEEeCCCeEEEEEccCCceEEEe-----ccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCC
Q 015301 329 YTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 329 ~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
+.--.+..|++||+. |..+..+ ++|...|++++|..+.. -|++++.|..+.-|++...
T Consensus 414 AiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 888889999999995 4444433 58999999999987655 6899999999999998754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=219.43 Aligned_cols=311 Identities=15% Similarity=0.167 Sum_probs=224.7
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee-eeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-KDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
.|+||.+.|++++|+.||++|||++.|++|+||+++.-.... +.+...-.-+..+.+.|+||-+.+++.. ....+++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 688999999999999999999999999999999997642110 1111110112478899999987666554 55689999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.+...+.-......-..... .....|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-...+.
T Consensus 161 k~~K~~dG~~~~~~v~~D~~---~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNL---EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EeeecccCCCCccccccccc---ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 87544321111110000111 1122455567778888899999999999999999998 8889888777777788889
Q ss_pred eCCCCcEEEEeeCCCeEEEeccccc----ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCF----ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+ |+|+++++++..-.|++|.+--. .+.-.....+.+|...|..++|+++...+++.+.||.+++||++-.....+
T Consensus 237 S-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 S-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred C-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 8 99999999999999999986310 112334567889999999999999999999999999999999865322211
Q ss_pred ccccccccccccccccccccceeccccCccceeee--ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.. ..+... ..+...... ..++++|+|+.||.+. ...+++|..++++
T Consensus 316 Dp---------------------------k~Lk~g~~pl~aag~~p----~RL~lsP~g~~lA~s~-gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 316 DP---------------------------KILKEGSAPLHAAGSEP----VRLELSPSGDSLAVSF-GSDLKVFASEDGK 363 (420)
T ss_pred Cc---------------------------hHhhcCCcchhhcCCCc----eEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence 11 111111 111111111 1456889999888764 4579999999998
Q ss_pred eEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 347 QVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 347 ~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
...++ +.|...|.+++|+++|++++|++ |..+++..
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 77666 46899999999999999999997 67788776
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=243.28 Aligned_cols=250 Identities=20% Similarity=0.300 Sum_probs=221.0
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
+...|.++.|+|....++++-.+|.|.||+.++..........+. ||.+..|-+..+++++|+.|
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~---------------PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV---------------PVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc---------------chhhheeeeccceEEEecCC
Confidence 556899999999999999999999999999998877655554433 69999999999999999999
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-C
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-D 242 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 242 (409)
..|+||+..+++.+..+..|.+.|.+++.+ |...++++++.|-+|++||.. ....+.+.+.+|..-|.+++|+| |
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCCC
Confidence 999999999999999999999999999999 777899999999999999984 56788899999999999999999 5
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
.+.+++++-|++|++|.+.+ ..+..++++|.....++.... .
T Consensus 153 ~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~----~ 194 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYT----G 194 (794)
T ss_pred ccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEecc----C
Confidence 67899999999999999987 456678888886554443221 1
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|..+|++|+.|..|+|||..+..++.++.+|...|..+.|+|.-.+++|||+||+++||+-.+...+
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 34579999999999999999999999999999999999999999999999999999999998776544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=234.72 Aligned_cols=276 Identities=25% Similarity=0.401 Sum_probs=224.2
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++|+|++++++++.. ..++..........+.+|...+.++.|+|+++++++++.||.|++|++.++......
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~- 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL- 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-
Confidence 3578999999988777553 344444444455678899999999999999999999999999999999876444432
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..|...|.++.|+|+++++++++.++.+.+||+.+.+...... .|...+.+++|+|++.++++
T Consensus 90 --~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 90 --TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------------GHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred --eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---------------cCCCcEEEEEEcCcCCEEEE
Confidence 3455589999999998888888889999999998654322211 23446999999999888888
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
++.++.|.+||+.+++.+..+..|...+.+++|+ ++++.+++++.++.+++||++ .......+..|...+.++.|
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECC----CCceecchhhcCCceEEEEE
Confidence 8879999999999998888888899999999999 788888888889999999975 56667777788889999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+|++.++++++.||.+++||+.+ ......+..|. ..+..+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~----------------------------------~~~~~~~~~~~------~~i~~~ 267 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRT----------------------------------GECVQTLSGHT------NSVTSL 267 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCC----------------------------------ceeEEEccccC------CcEEEE
Confidence 99988888888899999999986 23344444443 234566
Q ss_pred eecCCCCEEEEEeCCCeEEEEE
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d 341 (409)
+++|++++|++++.||.+++|+
T Consensus 268 ~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCCCEEEEecCCCeEEecC
Confidence 7899999999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=243.07 Aligned_cols=348 Identities=19% Similarity=0.231 Sum_probs=245.6
Q ss_pred eeeEEecCceeEee---ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA---DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~---~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++|.|..-++.+ .+....|+|.-......+.+|.++|..++|+|++.++++|++|..|+||+..+...+. .+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---tL 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---TL 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---hh
Confidence 35788898877555 3344567766666667899999999999999999999999999999999998775544 46
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|-.-|..+.|++.-.+|++++.|.+|+||+..+.++..... +|..-|.|..|+|....+++++
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt---------------GHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT---------------GHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe---------------cCceEEEeeccCCccceEEEec
Confidence 6777799999999999999999999999999999988755443 5666799999999999999999
Q ss_pred ecCeEEEEECCCCe-----------------------------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 162 SDNFIYVYDLQANK-----------------------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 162 ~d~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
-|.+|+|||+..-+ ....+.+|...|+-++|+ |.-.+|++|+.|..|++|
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEE
Confidence 99999999985210 123457999999999999 777899999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
.+. ....-.+.+.++|.+.|.++-|+|..+++++.+.|++|++||+.+............ .+-.++..+....+
T Consensus 234 rmn--etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend----RFW~laahP~lNLf 307 (1202)
T KOG0292|consen 234 RMN--ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND----RFWILAAHPELNLF 307 (1202)
T ss_pred Eec--cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC----eEEEEEecCCccee
Confidence 975 223335567889999999999999999999999999999999988544333211100 00011111111111
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--eEEEeccC---CcceeeeEEecCc
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFH---NAPVRDCCWHPIY 367 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~---~~~v~~~~~s~~~ 367 (409)
...++.-+..|+-.. ..|++.-+++.|+..- |..|+-+|+.+.+ .+..++.. ..++.+++++|..
T Consensus 308 AAgHDsGm~VFkleR---------Erpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae 377 (1202)
T KOG0292|consen 308 AAGHDSGMIVFKLER---------ERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE 377 (1202)
T ss_pred eeecCCceEEEEEcc---------cCceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence 111111111111110 0111221233333333 6667777776643 23334432 3578899999987
Q ss_pred C-eEEeec-CCCeEEEEecCCC
Q 015301 368 P-MLISSS-WDCNIVRWEIPGI 387 (409)
Q Consensus 368 ~-~l~s~~-~dg~i~iw~~~~~ 387 (409)
. .|++.. ..|.--++.++..
T Consensus 378 ~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 378 NAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred CeEEEEeccCCCeEEEEEecCc
Confidence 7 444433 3456666666554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=261.59 Aligned_cols=291 Identities=15% Similarity=0.193 Sum_probs=216.2
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCC----------CceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNG----------PWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~ 72 (409)
+.+++|+|||.++++++.......+.... +.....+...|.+++|+| ++.+||+++.||+|++||+.++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 56799999999988876553333332210 111223457899999987 4789999999999999999987
Q ss_pred eeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 73 WKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
..+.. ..+|...|.+++|+| ++.+|++|+.|+.|++||+.++........ ...+.++.|+
T Consensus 566 ~~~~~---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~----------------~~~v~~v~~~ 626 (793)
T PLN00181 566 QLVTE---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT----------------KANICCVQFP 626 (793)
T ss_pred eEEEE---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec----------------CCCeEEEEEe
Confidence 54443 456777999999997 789999999999999999987654222110 1258899995
Q ss_pred -CCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--cCCceeeee
Q 015301 152 -TDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVL 227 (409)
Q Consensus 152 -~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 227 (409)
+++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++..|++++.|++|++||++... .....+..+
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 579999999999999999998765 466778999999999997 56789999999999999986321 123566778
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccc
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 307 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (409)
.+|...+..++|+|++.+|++|+.|+.|++|+............. ....+.....
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-----------------------~~~~~~~~~~-- 759 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-----------------------TIDPVSGLEV-- 759 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-----------------------cCCccccccc--
Confidence 899999999999999999999999999999997653211100000 0000000000
Q ss_pred ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 308 VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 308 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
......+.+++|+|++..|++|+.||.|+||++
T Consensus 760 --~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 --DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred --CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 011134667789999999999999999999986
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=246.23 Aligned_cols=286 Identities=21% Similarity=0.302 Sum_probs=242.4
Q ss_pred Cceeec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 33 PWKVDG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 33 ~~~l~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
...+.+ |...+.|..|. ..++++++.|++|++|+..++..+.. ...+|.+.|.++++...+.+|++|+.|.++++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 344454 66789999998 56799999999999999988755443 36678889999999888899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
||..++++..... +|...+.++.. ....+++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 276 Wd~~sg~C~~~l~---------------gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 276 WDCSTGECTHSLQ---------------GHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EecCCCcEEEEec---------------CCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 9999998765543 45556888776 445688889999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
.+ +.++++|+.|++|++||++ ..+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 339 ~~---~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------- 403 (537)
T KOG0274|consen 339 LD---EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------- 403 (537)
T ss_pred ec---CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence 86 7899999999999999975 89999999999999999988765 889999999999999999831
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+++.++.+|..... .+...+++|++++.|+.|++||..+++++..+
T Consensus 404 --------------------------~c~~tl~~h~~~v~--------~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 404 --------------------------KCIHTLQGHTSLVS--------SLLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred --------------------------hhhhhhcCCccccc--------ccccccceeEeccccccEEEeecccCceeeee
Confidence 46777777774431 22335789999999999999999999999999
Q ss_pred cc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 352 DF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 352 ~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+ |...|..+++. ...+++++.||.+++||++++...
T Consensus 450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 98 67889998886 457888899999999999987654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=236.60 Aligned_cols=280 Identities=15% Similarity=0.204 Sum_probs=226.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
-++|+. .+.||+|.. ..|++|+..++. +..+.... ...|+++.|+++|.+|++|..+|.|.|||..+.+......
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~-v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGS-VTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCc-eEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 367774 456777753 469999998884 33333332 5589999999999999999999999999998776543333
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
. .|...|.+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..++|+ +++.++++|
T Consensus 257 ~--------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASG 319 (484)
T KOG0305|consen 257 G--------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASG 319 (484)
T ss_pred C--------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccC
Confidence 2 155579999997 66799999999999999998776655 88999999999999 999999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEe--CCCcEEEeeCCCCccccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+.|+.+.|||.. ...+...+..|...|.+++|+| ...+||+|+ .|++|++||..+.
T Consensus 320 gnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----------------- 378 (484)
T KOG0305|consen 320 GNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG----------------- 378 (484)
T ss_pred CCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----------------
Confidence 999999999963 7778888999999999999999 456788765 4999999999873
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE--eCCCeEEEEEccCCceEEEeccCCcce
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG--SSDNSVYIYDLVSGAQVAKLDFHNAPV 358 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~v 358 (409)
..+...... .-+.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|
T Consensus 379 -----------------~~i~~vdtg-------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 379 -----------------ARIDSVDTG-------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV 434 (484)
T ss_pred -----------------cEecccccC-------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence 223322222 123455677777656553 457899999999999999999999999
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..++++|||..+++|+.|.++++|++-+..+.+
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~ 467 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFDERPKS 467 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccCCCCcc
Confidence 999999999999999999999999998764433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=238.56 Aligned_cols=298 Identities=17% Similarity=0.182 Sum_probs=218.2
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee----------eeecccccceEEEEEeCC-CCcEEEEEec
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK----------DIETKALRWTITDTSLSP-DQRFLVYASI 105 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~----------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 105 (409)
..|-..|.....++++..+++++.+.....|+...+..+.. .....+|.+.|.+++|+| ++++|++|+.
T Consensus 17 ~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 17 DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC
Confidence 34556677788888877788888888888888665532211 112456888999999999 8899999999
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEcCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
|+.|++||+.++....... .. .....+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.+|.
T Consensus 97 DgtIkIWdi~~~~~~~~~~--~~------l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNIS--DP------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CCEEEEEecCCCccccccC--cc------eEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 9999999997653211100 00 01123567789999999975 689999999999999999999998999999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc-eeEEEEcCCCCeEEEEe----CCCcEEEee
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRRDGRYFISNG----KDQTTKLWD 259 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~iwd 259 (409)
..|.+++|+ +++.+|++++.|+.|++||++ .+..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||
T Consensus 169 ~~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 169 DQITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 999999999 899999999999999999987 56677778888765 34677888888777654 478999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVY 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~ 338 (409)
+++... ++.....+.. .....+.|++++++|++++ .|+.|+
T Consensus 244 lr~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 244 TRKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 987331 1111111110 1233456889999999887 599999
Q ss_pred EEEccCCceEEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 339 IYDLVSGAQVAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 339 i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+||+.+++.+..... +..++..++|.|....=+. .--..+++.+...
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTYH 333 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceeeeEEEEecCC
Confidence 999999988776543 4567888999885321111 1123466666543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=214.83 Aligned_cols=300 Identities=16% Similarity=0.251 Sum_probs=231.3
Q ss_pred ceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------eeeeeeecccccceEEEEEeCC-CCcE
Q 015301 34 WKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNW------------KIQKDIETKALRWTITDTSLSP-DQRF 99 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~-~~~~ 99 (409)
-...-|.+.|+++...+ .|+++++|+.||.|.+||++... ++.......+|+..|.++.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 35567999999999987 68999999999999999997542 1112223456788999999999 5667
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeEEEEECCCCee
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+.+++.|.++++||..+.+....+++.. .|++-+++| ...++++|..+-.|++.|+.+|..
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEG----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCc----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 8888999999999999887655555433 488888888 345788888899999999999999
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc-----------cCCceeeeeeccccceeEEEEcCCCCe
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI-----------SKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
...+.+|...|.++.|+|...-.|++|+.||.|++||+|... .....++.-..|.+.+..++|+.++.+
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 999999999999999998888889999999999999998320 111122234468889999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
+++++.|..+++|+..+++....... ..+..-+.+.. +... +.+.
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g--------------------------~~~~n~~~~~~--------~~~~-~~~s 305 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFG--------------------------PIIHNQTTSFA--------VHIQ-SMDS 305 (397)
T ss_pred hhhccCccceEEeecccCcccccccc--------------------------cccccccccce--------EEEe-eccc
Confidence 99999999999999988543222111 11111011100 0011 1123
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..++---.++.+.++++-+++.+..+..|...|.+..+-|+=+.+.++..|+.|..|-.
T Consensus 306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 33444445689999999999999999999999999999999999999999999999987
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=226.44 Aligned_cols=288 Identities=16% Similarity=0.176 Sum_probs=230.9
Q ss_pred ceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... ...|.+.|..+++.. ..+++++.|.+|+.|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEEecc--cceEEecCCcceeee
Confidence 3679999999999999987 7899999999999999987655444 556777999999986 678899999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.++..- ..... ....+..+.-+..+..+++++. .|.|||.....++..+.-....|.++.|
T Consensus 135 k~~~~p---~~til--------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 135 KIDGPP---LHTIL--------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred eccCCc---ceeee--------------ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 987631 11100 0113666666667778888874 5999999999999999888889999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+|-..++|+++..|+.|.+||+| ...++..+. -.-.-+.|+|+|.+-.++++++|..++.||++...
T Consensus 196 NpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-------- 262 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-------- 262 (433)
T ss_pred CCCcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--------
Confidence 98888899999999999999998 444443332 12335779999988889999999999999999843
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.++..+.+|. ..+.+++|||.|+-+++|+.|.+|+||.++.+.....+.
T Consensus 263 -------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 263 -------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred -------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 4566667766 667788999999999999999999999998776544331
Q ss_pred c-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 353 F-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 353 ~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. -...|.++.||.|.+++++||.|+.|++|.-...++
T Consensus 312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 1 234799999999999999999999999998765443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=249.77 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=231.5
Q ss_pred eecCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCC--------e-eeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKN--------W-KIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~--------~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+.++...|.+++.+|||..+|||+ .|+.++||+.+.- + ..........|.+.|+|+.|+|||++||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 344557799999999999999999 8999999997532 1 1122334566888999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccce---eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 105 ICAIVNIVDVGSSARESLANV---TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
.|+.|.+|............. ..............+|...|..++|+|++.+|++++.|++|.+|+..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999874110000100 00011111222233688899999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc------cceeEEEEcCCCCeEEEEeC----
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL------EGITFIDSRRDGRYFISNGK---- 251 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~---- 251 (409)
+|.+.|..+.|. |-|++|++-+.|++|++|++. .....+.+.++- ..+..+.|+|||++|++...
T Consensus 169 ~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 169 GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred cccccccceEEC-CccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 999999999999 899999999999999999954 444444444332 34678999999999998643
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec-C-------
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS-T------- 323 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~------- 323 (409)
-.++.|.+-.+ ...-..+-||.....+ ..|+|.+- .
T Consensus 244 ~~~~~IieR~t----------------------------------Wk~~~~LvGH~~p~ev--vrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 244 KSTIAIIERGT----------------------------------WKVDKDLVGHSAPVEV--VRFNPKLFERNNKNGTS 287 (942)
T ss_pred cceeEEEecCC----------------------------------ceeeeeeecCCCceEE--EEeChHHhccccccCCc
Confidence 22455555433 2334455566643322 22333211 0
Q ss_pred -CC----CEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 324 -AQ----KYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 324 -~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.. ..+|+|+.|++|.||.....+++..+. -....|.+++|+|||..|+.+|.||+|.+..+++.
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 168999999999999998888876654 24678999999999999999999999999999764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=196.31 Aligned_cols=295 Identities=20% Similarity=0.292 Sum_probs=231.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee------------eeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
.....+..|.+++|+|.|.+.|+|+...+++|.....-.. .......+.|.+.|.|.+|+|+|.+|++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 3445667899999999999999999999999876542110 1122334567889999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC----CCeEEEEEe-cCeEEEEECCCCeee
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS-DNFIYVYDLQANKCS 177 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~i~v~d~~~~~~~ 177 (409)
|+.|.+|++..+..........-. +| .-|.+.|..++|..+ +..|++++. |..|++-|...|+..
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dl------e~----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDL------EF----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCCCceEEEEecccccccccCcce------ee----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 999999999887665443222111 11 135567999999753 456666654 678888899999999
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEe
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+.+.+|++.|.++- + .++-++++|+.|.+|++||+| ...++..+.. ....|.+++..|.|++|++|.
T Consensus 177 ~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 177 HALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred eeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999998873 3 568999999999999999998 3334433321 235789999999999999999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.|....+||++. ++.++.+..|... +.++.|||...|+++
T Consensus 251 ~dssc~lydirg----------------------------------~r~iq~f~phsad------ir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 251 ADSSCMLYDIRG----------------------------------GRMIQRFHPHSAD------IRCVRFSPGAHYLLT 290 (350)
T ss_pred CCCceEEEEeeC----------------------------------CceeeeeCCCccc------eeEEEeCCCceEEEE
Confidence 999999999998 6778888888743 344579999999999
Q ss_pred EeCCCeEEEEEccCC----ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 331 GSSDNSVYIYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
++.|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 291 ~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999998532 2344556789999999999998899999999999999875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=221.34 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=237.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee--------------ec-ccccceEEEEEeCCCCc
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--------------ET-KALRWTITDTSLSPDQR 98 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--------------~~-~~~~~~v~~~~~s~~~~ 98 (409)
..+..|.-+|.|++++|++++.++++.+++|.=|++.++....... .. ..|...+.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999998875331111 11 26778899999999999
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL 178 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 178 (409)
+||+|+.|..|.||+.++.+..... .+|...|.+++|-.....+++++.|..|++|+++....+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~---------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF---------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc---------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 9999999999999999988754432 3567789999999988899999999999999999999999
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
++.+|.+.|..+... ..+..+-+|+.|+++++|++ .......+.++.+.+.+++|-. ...+++|+.+|.|.+|
T Consensus 281 tlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred HHhCCccceeeechh-cccceEEeccccceeEEEec-----cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 999999999999988 67777777889999999997 3344456778888999999974 5679999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
++-+............ .. ..+. .......+.+++..|...++|+|+.+|.|+
T Consensus 354 s~~KKkplf~~~~AHg---------------------v~------~~~~-~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHG---------------------VI------PELD-PVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred eecccCceeEeecccc---------------------cc------CCcc-ccccccceeeeEecccCceEEecCCCCceE
Confidence 9987443322111000 00 0000 011113667778889999999999999999
Q ss_pred EEEccCC----ceEEEeccCCcceeeeEEecCcCe-EEeecCCCeEEEEecCC
Q 015301 339 IYDLVSG----AQVAKLDFHNAPVRDCCWHPIYPM-LISSSWDCNIVRWEIPG 386 (409)
Q Consensus 339 i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 386 (409)
+|-+..+ +++..+. -.+.|++++|+++|+. ++..+....+--|-...
T Consensus 406 LW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred EEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 9999887 4566666 6789999999999994 44556666666665543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=218.56 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=234.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|+++...|....++||+.|.++.++|...++.+. .+.+|...|+.+.|+|+...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 568889998887889999999999999998874443 46778889999999999999999999999999998766532
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 198 (409)
... ..|..+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+ |||.
T Consensus 297 ~~~---------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgL 360 (506)
T KOG0289|consen 297 TSS---------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGL 360 (506)
T ss_pred ccc---------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCce
Confidence 221 14556899999999999999999999999999999988776543 23458999999 9999
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+|.+|..||.++|||+. .......+.+|.++|..++|+.+|-+|++++.|+.|++||+|+..
T Consensus 361 ifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-------------- 422 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-------------- 422 (506)
T ss_pred EEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--------------
Confidence 99999999999999975 666788899999999999999999999999999999999999833
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc--CCceEEEeccCCc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV--SGAQVAKLDFHNA 356 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~ 356 (409)
...++..... ..+.++.|++.|.+|+.++.|=.|++++-. +...+..+..|.+
T Consensus 423 --------------------n~kt~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg 477 (506)
T KOG0289|consen 423 --------------------NFKTIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG 477 (506)
T ss_pred --------------------ccceeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccc
Confidence 2223322221 113355688889999999888777777633 4567888888999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.+.|....++++++|.|..++++.+
T Consensus 478 ~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 478 LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999999988765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=206.89 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=220.7
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 39 MNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
-.+.|.+++||| ...+++.+|.|++||+|+++....... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 457899999999 455666899999999999987422222 345567889999999999999999999999999999998
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC--eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+..... .|..+|..+.|-+... .|++|+.|.+|+.||.++..++.++. -...+.++..-
T Consensus 105 Q~~~v~----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 105 QVSQVA----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL-- 165 (347)
T ss_pred Ceeeee----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--
Confidence 654332 3455899999988655 89999999999999999999888876 35667777654
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
..+++++..+..|.+|+++......+.. ...-+-.+.+++..++.+..+.|+-+|.+.+..+.....
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~---------- 232 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP---------- 232 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc----------
Confidence 5678888999999999986322211111 122345688999988888889999999999999887322
Q ss_pred cccccccccccccceeccccCccceeeeecccce---eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL---RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
..-..|+.|... ...+..+.+++|.|....|++++.||++.+||-.....+.+.+
T Consensus 233 ----------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 233 ----------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred ----------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 223455555531 1224566788999999999999999999999998888899989
Q ss_pred cCCcceeeeEEecCcCeEEee
Q 015301 353 FHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.|..+|++.+|+.+|.+++-+
T Consensus 291 ~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCCCccceeEecCCCCEEEEE
Confidence 999999999999999977654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=214.89 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=209.9
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
.+.+.|..|+|||++|++|+.||.|.+|+..+++...-.+......-+ -+..+|.|+.|+.|...+++|+.||
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fM-------Mmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFM-------MMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhccee-------ecccceEEEeecccHHHhhccCcCC
Confidence 346889999999999999999999999999999876554443322111 2344799999999999999999999
Q ss_pred eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 165 FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.|++|.+++|.+++.+. .|+..|+|+.|+ .++..+++++.|.++++.-++ .+++++.+++|...|+...|.++|
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCC
Confidence 99999999999999985 899999999999 899999999999999999965 899999999999999999999999
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+++++.||+|++|+.++.+|... |+.......+...+.-| .
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~T----------------------------------fk~~~~d~~vnsv~~~P---K 403 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLST----------------------------------FKPLGTDYPVNSVILLP---K 403 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhh----------------------------------ccCCCCcccceeEEEcC---C
Confidence 9999999999999999998555443 33322222222222222 2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEecc---CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+...++++...++|+|.++ .|+.+..+.. ..+...+.+.||.|.+++..+.|+.++.+.+.++..+
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 4567888888999999998 6788887753 2345667789999999999999999999999887654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=226.86 Aligned_cols=253 Identities=18% Similarity=0.244 Sum_probs=208.4
Q ss_pred eeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 78 DIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
.....+|...|+++.|.| .+.+|++++.|+.|+||++... ++.... .+|..+|.+++|+++|.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf---------------~gH~k~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF---------------KGHRKPVRDASFNNCGT 271 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh---------------hcchhhhhhhhccccCC
Confidence 345678999999999999 7899999999999999999773 322221 25677899999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.+++++.|+.|++||.++|+++..+. ....++|+.|.|.+.+.+++|+.|+.|+.||+| .++.++.+..|.+.|.
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAIL 346 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhee
Confidence 99999999999999999999999886 356789999996666999999999999999987 8889999999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
.+.|-++|+++++.+.|++++||+.+.+..... +.....|.
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~-------------------------------i~~~~~hs-------- 387 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKN-------------------------------IADPEMHT-------- 387 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchh-------------------------------hcchhhcc--------
Confidence 999999999999999999999999887332111 11111111
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCC---ceEEEeccCC--cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHN--APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.-++..+|+++++++-+.|+.|.+|.+... .....+++|. +.-..+.|||||++|++|+.||.+.+||..+...
T Consensus 388 mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 388 MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 123467889999999999999999997543 2334566774 4556789999999999999999999999987654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=201.64 Aligned_cols=245 Identities=15% Similarity=0.252 Sum_probs=197.4
Q ss_pred CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~ 116 (409)
-.+.+..++|+++. +.+++++.||++++||+... ...+...+.|...|.++.|++ ++..+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 45789999999854 57889999999999995543 334556778888999999998 466778889999999999877
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
++..... .+|...|...+|+| ..+.+++++.|+.+++||++..-....++.|...+.++.|+.-
T Consensus 137 ~~Sv~Tf---------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 137 PNSVQTF---------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred CcceEee---------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 6543331 24666899999999 6788999999999999999865555558999999999999988
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
+.+++++|+.|+.|+.||+|. -..++..+.+|.-.|..+.|+|. ...|++++.|-+++|||.....
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------- 268 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------- 268 (311)
T ss_pred CCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------
Confidence 899999999999999999983 34667888999999999999996 4578999999999999987532
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~ 342 (409)
..+.+...|. ..+..++||+ ++.++|+.+-|+.++||+.
T Consensus 269 -----------------------s~~e~~~~Ht------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----------------------SAIETVDHHT------EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhhhccc------eEEeccccccccCceeeecccccceeeecc
Confidence 3344444454 3333444544 5679999999999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=211.44 Aligned_cols=286 Identities=18% Similarity=0.266 Sum_probs=218.3
Q ss_pred ceeEeeccceEEEEeeecC--CCceeecCCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCeeeee-eeecccccc
Q 015301 13 GRFSAADSCHVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDG---SFFVAASQESNIKVYNVDKNWKIQK-DIETKALRW 86 (409)
Q Consensus 13 g~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~ 86 (409)
++++.+++++...+.+... ...++.||.++|.+++|--.. ..|++++.|.++++|..+.+..... .....+|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 4567776666555555544 445788999999988884333 3599999999999999987744322 223458999
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee----------eeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK----------GLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.|.++...+++..+++|+.|..|.+|+................. .-.-.....+|..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 99999999999999999999999999944332221111111000 0001112248999999999998 667
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++++.|.+|+.||++++..+.++.+ ....+++.++ +..++|++|+.|..+++||.|.. ........+.+|++.|.+
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhh
Confidence 99999999999999999998888874 5789999999 78999999999999999999954 334456778999999999
Q ss_pred EEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 237 IDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 237 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
+.|+|.. .+|++++.|+++++||+|+.. .++..+.+|. .-
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------------------------~plydI~~h~------DK 391 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------------------------APLYDIAGHN------DK 391 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCC---------------------------------CcceeeccCC------ce
Confidence 9999965 468899999999999999832 3566677775 34
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
+++..|. ++.++++|+.|.+|+|+..
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEecc
Confidence 4555665 3679999999999999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=223.95 Aligned_cols=284 Identities=15% Similarity=0.247 Sum_probs=232.8
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCC-CCcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSP-DQRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~ 110 (409)
...+.||...|..+++.+. ..++++|.||++++|+-..++-+ ......++.+-|.. +++-+ ++-.|++|+.|..+.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l-~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYL-ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccc-cceecccCcceeeccceeccccCcceEeecccceEE
Confidence 3578899999999998754 47999999999999997655333 22334445556665 77775 455699999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+|...+....... .+|...|.++....++. +++|+.|.++++|-. +++...+++|+..|.++
T Consensus 85 v~~~~~~~P~~~L---------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 85 VFKLSQAEPLYTL---------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred EEecCCCCchhhh---------------hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence 9999877653332 26777899999888887 999999999999986 45666799999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+.. +++ .+++|+.|.+|++|. .++.++.+.+|.+-|+.+++-+++ .|++++.||.|++|++.
T Consensus 147 ~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--------- 208 (745)
T KOG0301|consen 147 ASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--------- 208 (745)
T ss_pred eec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc---------
Confidence 999 444 899999999999999 688999999999999999998764 48999999999999995
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+..+..+.+|. ..++++....++..++++++|++++||+.. ++.+.
T Consensus 209 --------------------------ge~l~~~~ght------n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~ 254 (745)
T KOG0301|consen 209 --------------------------GEVLLEMHGHT------NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQV 254 (745)
T ss_pred --------------------------Cceeeeeeccc------eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEE
Confidence 36788888888 455666777788999999999999999976 78888
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+......|+++.+-++|. +++|+.||.|+||.......
T Consensus 255 I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 876666899999888876 67788899999999875443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-31 Score=198.74 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=221.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
...|..+.|+|.+..|++++.||++++|+.... .+.. ...|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~---~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKL---KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhh---heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 577999999999999999999999999999877 2222 233556999999987 56788999999999999998875
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..... |..++.++.+++....+++|+.|++|++||.+.......+. ....|.++... ++.
T Consensus 88 ~~igt----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~~ 147 (323)
T KOG1036|consen 88 DQIGT----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GNR 147 (323)
T ss_pred eeecc----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CCE
Confidence 44433 44479999999988889999999999999998755555554 34588888865 788
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
|++|+.|..+.+||+|...... ...-..-+-.+.++++.|++.-+++++-||.|.+=.++..+..+
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~------------ 213 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ------------ 213 (323)
T ss_pred EEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh------------
Confidence 9999999999999998432221 22223345678999999988889999999999887766532111
Q ss_pred cccccccccceeccccCccceeeeecccc---eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSV---LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
..-..|+.|.. .....-++.+++|+|-...||+|+.||.|.+||+.+.+.+..+.....
T Consensus 214 ------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~ 275 (323)
T KOG1036|consen 214 ------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET 275 (323)
T ss_pred ------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC
Confidence 22334555543 334556677889999999999999999999999999999999987778
Q ss_pred ceeeeEEecCcCeEEeecC
Q 015301 357 PVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~ 375 (409)
.|..++|+.+|..||.++.
T Consensus 276 SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeccCCCeEEEEec
Confidence 8999999999999999863
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=200.07 Aligned_cols=268 Identities=18% Similarity=0.273 Sum_probs=207.0
Q ss_pred EEEEeCCCcEEEEEcCCC---------eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 55 FVAASQESNIKVYNVDKN---------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
+++|+....|.=+++.-. ..+...+....|.++|++++.+ +.++|+|+.|.+|+|||+..........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-
Confidence 566776666666655422 1234456778899999999986 8999999999999999998765432221
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCC--eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQ--ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
.|.+.|+++.|.++.. .|++|+.||.|.+|+....+.+..+++|.+.|+.++.+ |.+++.++.
T Consensus 81 --------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsV 145 (362)
T KOG0294|consen 81 --------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALSV 145 (362)
T ss_pred --------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEEE
Confidence 3455799999998764 89999999999999999999999999999999999999 899999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
+.|+.+++||+- .++....+.- ....+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 146 g~D~~lr~WNLV----~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~--------------- 204 (362)
T KOG0294|consen 146 GGDQVLRTWNLV----RGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE--------------- 204 (362)
T ss_pred cCCceeeeehhh----cCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh---------------
Confidence 999999999974 4443333321 22234499999999999988775 89998876221111
Q ss_pred cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
.... .... ++ .| -++..|++|..|+.|.+||..+..+...+.+|...|-++.+
T Consensus 205 -------------------i~~~---~r~l-~~---~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 205 -------------------IENP---KRIL-CA---TF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred -------------------hhcc---ccce-ee---ee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 1100 0011 11 11 25789999999999999999999999999999999999985
Q ss_pred --ecCcCeEEeecCCCeEEEEecCCCc
Q 015301 364 --HPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 364 --s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.|++.+|+|+|.||.|++||++...
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccc
Confidence 4667799999999999999998753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=199.32 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=200.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 162 (409)
...|+++.|+++|..|++++.|..+++||..+++........ ..++..++|......++.++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---------------kyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---------------KYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---------------cccccEEEEecCCceEEEccCCC
Confidence 447999999999999999999999999999998765444322 235888888877777777776
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
|.+|+..++.+.+.++-+.+|...|+.++.+ |.++.+++++.|++|++||+| ..++...+.. ..-..++|.|+
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~--~~~pi~AfDp~ 151 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNL--SGRPIAAFDPE 151 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEec--CCCcceeECCC
Confidence 8899999999999999999999999999999 666999999999999999987 3444433332 23345789999
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
|-++|++...+.|++||++.....+ ...+.-.. ........+.||
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgP--------------------------------F~tf~i~~---~~~~ew~~l~FS 196 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGP--------------------------------FTTFSITD---NDEAEWTDLEFS 196 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCC--------------------------------ceeEccCC---CCccceeeeEEc
Confidence 9999999888899999999854322 22222211 111234466899
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce---eeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+||++++++|+.||+|.+|+++++.+.
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 999999999999999999999999999988775432 56789999999999999999999999887654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=229.05 Aligned_cols=257 Identities=19% Similarity=0.201 Sum_probs=190.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 165 (409)
.|.....++++..+++++.+.....|+...+... ...........-.+...+|...|.+++|+| ++++|++|+.|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 4555666777777788887888888887554321 111110000000112246788999999999 8889999999999
Q ss_pred EEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 166 IYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 166 i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|++||+.++ +++..+.+|...|.+++|+|..+++|++++.|+.|++||++ .+.....+.+|...|.+++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEEE
Confidence 999999765 34667889999999999995556899999999999999975 6677778888999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|+|++.+|++++.|+.|++||+++ +..+..+.+|..... ..
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rs----------------------------------g~~v~tl~~H~~~~~-~~---- 216 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRD----------------------------------GTIVSSVEAHASAKS-QR---- 216 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCC----------------------------------CcEEEEEecCCCCcc-eE----
Confidence 999999999999999999999987 334455555543211 11
Q ss_pred eeecCCCCEEEEEe----CCCeEEEEEccCCc-eEEEeccC-CcceeeeEEecCcCeEEeec-CCCeEEEEecCCCc
Q 015301 319 PEYSTAQKYIYTGS----SDNSVYIYDLVSGA-QVAKLDFH-NAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPGIG 388 (409)
Q Consensus 319 ~~~s~~~~~l~~~~----~dg~v~i~d~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~ 388 (409)
..|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .||.|++||+.++.
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 23556666666544 47999999998754 44444433 34566678999999998887 59999999998765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=218.26 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=236.3
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee--eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD--IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
...|..-|.++++|...+.+.||+. |.|+|||+......... +.......-|.++...|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3478899999999999999999986 56999999765322221 11222344799999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+..........+.... ..+++++.+||.+..++++.||.|.|||+.+...++.+++|.+.+.||.++
T Consensus 494 LAapTprikaeltssa-------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA-------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred ccCCCcchhhhcCCcc-------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 9887654444333221 148889999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
++|..|.+|+-|.+|+-||+| .+..+... .....|.++.++|++.++++|-.++.+.+.......
T Consensus 561 -~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~--------- 625 (705)
T KOG0639|consen 561 -KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE--------- 625 (705)
T ss_pred -CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc---------
Confidence 999999999999999999987 44443332 245789999999999999999999999888776521
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
...+..|. .++.++.|++-|+++++.+.|+.+..|...-|..+...+
T Consensus 626 --------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk- 672 (705)
T KOG0639|consen 626 --------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK- 672 (705)
T ss_pred --------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-
Confidence 12223333 677888999999999999999999999999998888877
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.|.++..|.|.++++||+.|..-.+|.+
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5678999999999999999999988888875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=219.08 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=221.7
Q ss_pred eEEecCceeEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc
Q 015301 7 VNYSGRGRFSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (409)
Q Consensus 7 ~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 85 (409)
+.||..+....+ +....+|............-+...|+++.|+++|++||+|..+|.|.|||......+..... .|.
T Consensus 183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--~h~ 260 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--SHA 260 (484)
T ss_pred hhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC--CcC
Confidence 456655544333 44555565544443333344489999999999999999999999999999987755544322 177
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
..|.+++|. +..+.+|+.++.|..+|++..+.... . ..+|...|..++|++++.++++|+.|+.
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~-------------~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-T-------------LQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-h-------------hhcccceeeeeEECCCCCeeccCCCccc
Confidence 799999998 67899999999999999988765433 1 1356778999999999999999999999
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
+.|||....+++..+..|.++|.+++|+|....+||+|+ .|+.|++||.. .+..+..+. ....|.++.|++..
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKY 399 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCC
Confidence 999999888899999999999999999999999999975 79999999964 666666554 45789999999998
Q ss_pred CeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 244 RYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 244 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
+.|+++. .++.|.||+..+ -..+..+.+|.. .+..+++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps----------------------------------~~~~~~l~gH~~------RVl~la~ 439 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS----------------------------------MKLVAELLGHTS------RVLYLAL 439 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc----------------------------------cceeeeecCCcc------eeEEEEE
Confidence 7777653 467899999987 345677788873 3556789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
||||..+++|+.|.++++|++-..
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999998764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=201.86 Aligned_cols=277 Identities=14% Similarity=0.227 Sum_probs=219.2
Q ss_pred eeEEe---cCceeEeeccceEEEEeeec---CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 6 EVNYS---GRGRFSAADSCHVLSRYLPV---NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s---~dg~~~~~~~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
-|+|| |||-|+.+.+.+--..+-.. .-.-++.||.+.|+....+.+....|+++.|-+-+|||.-++..+..
T Consensus 19 dl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-- 96 (334)
T KOG0278|consen 19 DLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-- 96 (334)
T ss_pred EEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--
Confidence 35666 58888776554321111111 11137899999999999999999999999999999999988855543
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..|..-|.+++|+.|.++|++|+.+..+++||++..+...... .+|.+.|..+.|....+.|++
T Consensus 97 --f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~--------------~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 97 --FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI--------------SGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred --hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh--------------cCCCCcceeEEEeccCceEEe
Confidence 3355589999999999999999999999999998776432221 356778999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
.+.|++|++||.+++..++++. ...+|+++.++ +++.+|.++ ..+.|++||.. ....++... -...|.+.++
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs-~dG~ilTia-~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL 232 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVS-QDGRILTIA-YGSSVKFWDAK----SFGLLKSYK-MPCNVESASL 232 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeec-cCCCEEEEe-cCceeEEeccc----cccceeecc-Cccccccccc
Confidence 9999999999999999999987 56789999999 888776654 56789999964 555555554 3456888999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee-ecccceeeeeEEEEe
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFS 318 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 318 (409)
+|+...+++|+.|..++.||..+. ..+..+ ++|. ..+.+
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~Tg----------------------------------eEi~~~nkgh~------gpVhc 272 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTG----------------------------------EEIGSYNKGHF------GPVHC 272 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCC----------------------------------ceeeecccCCC------CceEE
Confidence 999999999999999999999983 334443 5555 45566
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
+.|+|+|...++|++||+|++|....++..
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecCCCch
Confidence 789999999999999999999998766543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=212.96 Aligned_cols=264 Identities=21% Similarity=0.313 Sum_probs=214.4
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceec---eeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTE---IHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
.....|.-+|.+++++|++++.++++.+++|.-|++.+++......... ......+......|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3455677799999999999999999999999999999887541111110 0011222222247888999999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|- ...+.+++++.|+.+++|++. ....+.++.+|.+.|.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVL 290 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999998 888899999999999999964 7778888999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.....++.+-+|+.|.++++|++.. ..-..+.++.....++..
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred eechhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEE
Confidence 999888888888888999999999954 233445555433333322
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-C-----------CcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-H-----------NAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+ +...+++|+.+|.|.+|++...+++.+.+. | ...|++++..|...++++|+.+|+|++|.
T Consensus 336 I-------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 336 I-------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred e-------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 2 357899999999999999999998877641 2 22789999999999999999999999999
Q ss_pred cCCCcc
Q 015301 384 IPGIGE 389 (409)
Q Consensus 384 ~~~~~~ 389 (409)
+.++..
T Consensus 409 i~~g~r 414 (479)
T KOG0299|consen 409 IEDGLR 414 (479)
T ss_pred ecCCcc
Confidence 988743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=210.73 Aligned_cols=293 Identities=12% Similarity=0.174 Sum_probs=232.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~ 118 (409)
.+.|+++.|+|...+|++++.|++++||.++..... .+....-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 478999999999999999999999999999865322 2222222345899999999998 88899999999999999888
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
......+..... ..+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+ .++.
T Consensus 292 ~~k~~~~~g~e~------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sdsk 357 (514)
T KOG2055|consen 292 VTKLKPPYGVEE------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SDSK 357 (514)
T ss_pred cccccCCCCccc------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cCCc
Confidence 766555443321 247788999999999999999999999999999998887 46889999999 8899
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
.|++++.+|.|.+||++ ...++..+.... -.-++++.++++.+|++|+..|.|.|||.++-....
T Consensus 358 ~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---------- 423 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---------- 423 (514)
T ss_pred EEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC----------
Confidence 99999999999999987 446666554322 123567788999999999999999999977621110
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCCceEEEeccC-
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSGAQVAKLDFH- 354 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~- 354 (409)
..+++..+. .....+.++.|++|.++||.++. ...+++-.+.+......+...
T Consensus 424 ------------------~PkPik~~d------NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 424 ------------------NPKPIKTVD------NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ------------------CCCchhhhh------hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 112232222 33356778899999999999886 578999998887777666543
Q ss_pred --CcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 355 --NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 355 --~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-+.|+|++|||.+.+|+.|..+|.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3468999999999999999999999999874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=190.52 Aligned_cols=266 Identities=13% Similarity=0.144 Sum_probs=216.7
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCC--CceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNG--PWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.++++|..||..+++++.. .++...+... .....+|.+.|-.++|+|. ..+|++++.|.+|++||...+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 46789999999999987654 3343333322 2356799999999999874 5689999999999999999987776
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
......+ -.-+.|+|+|+++++++.|..|...|.++.+......... .+..++|+.++.+
T Consensus 102 ~i~~~~e----ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~----------------e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 102 RIETKGE----NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF----------------EVNEISWNNSNDL 161 (313)
T ss_pred EeeccCc----ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc----------------eeeeeeecCCCCE
Confidence 6544333 3457899999999999999999999998876544433322 4788999988888
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
++.....|.|.|....+-+++..++.|.....|+.|+ |+|++|++|+.|..+.+||+. ...+.+.+..+.-+|..
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVD----ELICERCISRLDWPVRT 236 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChh----HhhhheeeccccCceEE
Confidence 7777778999999999999999999999999999999 999999999999999999965 77788888899999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
++|+.+|++|+++++|..|-|=+++++ ..+..+.. ....
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetG----------------------------------d~~~eI~~-------~~~t 275 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETG----------------------------------DRVWEIPC-------EGPT 275 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccC----------------------------------CeEEEeec-------cCCc
Confidence 999999999999999999999888873 33333222 2345
Q ss_pred EeeeecCCCCEEEEEeCC
Q 015301 317 FSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~d 334 (409)
+.++|.|...+||.++.|
T Consensus 276 ~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeEEecCCCceeeEEecC
Confidence 677899999999988765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=211.89 Aligned_cols=269 Identities=19% Similarity=0.299 Sum_probs=209.8
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee-------eeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 38 GMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK-------DIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
.|.+.|+.+.+-|+.. ++|+.+..+.|.|||......... .+.+.+|...-.+++|++. .-.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5889999999988765 567778889999999875432222 2345667766788999985 457889999999
Q ss_pred EEEEEcCCCccc-cccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECC--CCeeeeEEcCCC
Q 015301 109 VNIVDVGSSARE-SLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ--ANKCSLRIPAHK 184 (409)
Q Consensus 109 i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~ 184 (409)
|.+||+...... .... ......+|...|..++|++ +..+|++++.|+.+.|||.+ +.++.....+|.
T Consensus 202 i~lwdi~~~~~~~~~~~---------p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVD---------PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred EEEEeccccccCCcccc---------ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 999999866542 1111 1111236777899999999 56678899999999999999 556667778999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 263 (409)
++|.|++|+|.++.+||+|+.|++|++||+|. -..++..+.+|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRN---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechh---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99999999999999999999999999999984 344888899999999999999964 57888999999999998762
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+. +.. ..||
T Consensus 350 g~eq~--------------------------------------------------~ed----------a~dg-------- 361 (422)
T KOG0264|consen 350 GEEQS--------------------------------------------------PED----------AEDG-------- 361 (422)
T ss_pred ccccC--------------------------------------------------hhh----------hccC--------
Confidence 11100 000 0111
Q ss_pred CCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 386 (409)
..+++..-.||...|.++.|+|... .|+|++.|+.+.||++..
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2355666778999999999999988 778899999999999974
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=220.39 Aligned_cols=257 Identities=16% Similarity=0.206 Sum_probs=187.1
Q ss_pred EeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 58 ASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 58 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|+.|++||+.++..... ...... .
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p~------~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDPQ------C 119 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccce------E
Confidence 56678899999876532 3345678889999999997 78999999999999999976432100 000000 0
Q ss_pred CCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 137 DGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
...+|...|.+++|+|++..+ ++++.|+.|++||+++++.+..+. |...|.+++|+ +++.+|++++.|+.|++||++
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEECC
Confidence 112566789999999988764 688899999999999998777775 66789999999 899999999999999999987
Q ss_pred ccccCCceeeeeeccccceeEE-----EEcCCCCeEEEEeCCC----cEEEeeCCCCccccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEGITFI-----DSRRDGRYFISNGKDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.+..+..+.+|.+.+... .|++++.+|++++.|+ .|++||+++..
T Consensus 198 ----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---------------------- 251 (568)
T PTZ00420 198 ----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---------------------- 251 (568)
T ss_pred ----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----------------------
Confidence 667777888898765432 3468889999988774 79999998632
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEe
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s 364 (409)
.++..+..+.... .+... ...+++.++++|+.|+.|++|++..+.. +..+. +..++.+++|.
T Consensus 252 -----------~pl~~~~ld~~~~-~L~p~---~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~ 315 (568)
T PTZ00420 252 -----------SALVTMSIDNASA-PLIPH---YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFL 315 (568)
T ss_pred -----------CceEEEEecCCcc-ceEEe---eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEc
Confidence 2233222222111 11111 1234688999999999999999977642 22222 56788999999
Q ss_pred cCcC
Q 015301 365 PIYP 368 (409)
Q Consensus 365 ~~~~ 368 (409)
|...
T Consensus 316 Pkr~ 319 (568)
T PTZ00420 316 PKQI 319 (568)
T ss_pred cccc
Confidence 9643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=207.83 Aligned_cols=309 Identities=14% Similarity=0.191 Sum_probs=233.8
Q ss_pred CceeecCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 33 PWKVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
..+..-|.++|++++|+|.. +++|+|..-|.|-+||+.+.+ ..........|..+|.++.|+|. ...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34567789999999999965 478899999999999996432 23344456678889999999994 567888999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v 187 (409)
|++-|+++............ ...+..+.|+.+...++.+..=|...+||++++.. ...+..|...|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d-------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTD-------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeeeecchhhHHHhhcCcc-------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 99999998876655554321 12478889998888888888888999999988765 45567789999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+.++++|-...+|++++.|++.+|||+|.......+......|...|.+..|||.+-.|++.+.|..|+|||..-....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~- 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK- 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-
Confidence 9999999899999999999999999999654444444556679999999999999888999999999999997411000
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
..+...+. |.....-.-..+...|.|+..++++|..-..|-|+|-..++.
T Consensus 405 -----------------------------~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 405 -----------------------------DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred -----------------------------CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 01111111 111111111234456888999999999999999999988888
Q ss_pred EEEeccCCc-ceeee-EEecCcCeEEe-ecCCCeEEEEecC
Q 015301 348 VAKLDFHNA-PVRDC-CWHPIYPMLIS-SSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~~~~-~v~~~-~~s~~~~~l~s-~~~dg~i~iw~~~ 385 (409)
+..+..... .|.++ .|+|-+..+++ ++..|.|+||--.
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 888755443 56554 89998884555 4567889988643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=223.82 Aligned_cols=260 Identities=22% Similarity=0.278 Sum_probs=209.9
Q ss_pred EEEeeecCCCce-eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 24 LSRYLPVNGPWK-VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 24 ~~~~~~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
.+.......... +.||.+.|.+++|..-+.+|++|+.|.++++||..++.+...+ .+|...|.++... ...+++
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEcc--CceEee
Confidence 334333333344 8899999999999887889999999999999999999777653 4677789888875 457888
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
|+.|.+|++|++.++....... +|..+|.++..+ +.++++|+.|+.|.+||+.+++++..+.+
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~---------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLR---------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred ccCCceEEEEeccCcceEEEec---------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 8999999999999776543332 255689999996 78999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC-ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|...|.++.+. .. +.+++|+.|++|++||++ .. +++..+.+|..-+..+.+ .+++|++++.|+.|++||..
T Consensus 370 H~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 370 HTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred CcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence 99999999887 33 899999999999999986 55 899999999998876665 47899999999999999998
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecc-cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH-SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
. +..+..+.+. . ..+...+.. ...+++++.||.+++|
T Consensus 442 ~----------------------------------~~~~~~~~~~~~------~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 442 E----------------------------------GECLRTLEGRHV------GGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred c----------------------------------CceeeeeccCCc------ccEEEeecC--cceEEEEecCCeeEEE
Confidence 8 4455555553 2 112222221 4678999999999999
Q ss_pred EccCCceEEEeccCC
Q 015301 341 DLVSGAQVAKLDFHN 355 (409)
Q Consensus 341 d~~~~~~~~~~~~~~ 355 (409)
|+++++.+..+-.+.
T Consensus 480 dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 480 DLRSGTLIRTLLSTD 494 (537)
T ss_pred ecccCchhhhhhhcc
Confidence 999999888774333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=201.88 Aligned_cols=282 Identities=21% Similarity=0.280 Sum_probs=215.7
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecC------C-------------C--ceeecCCCCeEEEEECCCCCEEEEEeCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVN------G-------------P--WKVDGMNSRVYTSQFSNDGSFFVAASQES 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~------~-------------~--~~l~~h~~~v~~~~~s~~~~~l~t~~~d~ 62 (409)
.|+.+||+||.++++++.+...+.+... . + .+|-.|.++|+++.|+|....|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 5899999999999998877655554432 0 1 36778999999999999999999999999
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
+|+++|+... ..++.........+|.++.|+|.|.+|++|.....+++||+.+-++-...... .+|.
T Consensus 195 tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd------------~qht 261 (430)
T KOG0640|consen 195 TVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD------------DQHT 261 (430)
T ss_pred eEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc------------cccc
Confidence 9999998764 22222222223448999999999999999999999999999988764443332 3567
Q ss_pred eeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
..|+++.+++.+++.++++.||.|++||--+++++.++ ..|. ..|.+..|. .+++++++.+.|..+++|.+. +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~----t 336 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEIS----T 336 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeec----C
Confidence 78999999999999999999999999999999998887 3454 578888998 999999999999999999964 7
Q ss_pred Cceeeeeeccc-----cceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 221 GRANGVLMGHL-----EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 221 ~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+..+....+-. .--+...|+....+++.-.+ .+.+.-||.++.....
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~--------------------------- 389 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA--------------------------- 389 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh---------------------------
Confidence 77777766531 11234457777777766544 5689999998833211
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
..-.+|.. .+....-||.+.-+++++.|.++++|--
T Consensus 390 ------l~slgHn~------a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 390 ------LLSLGHNG------AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ------hcccCCCC------CceEEEeCCCCCceeeecccceeeeeee
Confidence 11123331 1122246778899999999999999964
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=195.29 Aligned_cols=257 Identities=18% Similarity=0.182 Sum_probs=205.7
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
.-.+|.+.|..+...--|++|||++.|++|+|+..+.+.....+.++.+|.++|..++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3457999999999988999999999999999999998877677788999999999999965 79999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCC-e--eeeEEcCCCCCe
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN-K--CSLRIPAHKSDV 187 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~v 187 (409)
.-++++-....... .|...|++++|.|. |-.|++++.||.|.|.+.++. . .......|.-.|
T Consensus 86 ke~~g~w~k~~e~~-------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA-------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred ecCCCchhhhhhhh-------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 99888654333322 45668999999994 668899999999999998654 2 223457899999
Q ss_pred EEEEEeCCC--C-----------cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeEEEEe
Q 015301 188 NTVCFADET--G-----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFISNG 250 (409)
Q Consensus 188 ~~~~~~~~~--~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~ 250 (409)
++++|.|.. + ..|++|+.|..|+||+... ........+.+|.+-|+.++|.|.- .+|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999642 2 5699999999999999762 2445556689999999999999953 4799999
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.||++.||..+....... ...+.. ....++.+.||+.|++|++
T Consensus 231 qDg~viIwt~~~e~e~wk----------------------------~tll~~---------f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWK----------------------------KTLLEE---------FPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CCCcEEEEEecCccCccc----------------------------cccccc---------CCcceEEEEEeccccEEEE
Confidence 999999998774211110 011111 2255788889999999999
Q ss_pred EeCCCeEEEEEcc
Q 015301 331 GSSDNSVYIYDLV 343 (409)
Q Consensus 331 ~~~dg~v~i~d~~ 343 (409)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-29 Score=181.54 Aligned_cols=270 Identities=20% Similarity=0.292 Sum_probs=201.6
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
....|.+++|+|.|.+.++|+...++++-....-.....................+.|.+.|+|.+|+|+|++|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 34479999999999999999999999886543211110000000111122333445788899999999999999999999
Q ss_pred CeEEEEECCCCee-----eeEEcCCCCCeEEEEEeC--C-CCcEEEEee-CCCeEEEecccccccCCceeeeeeccccce
Q 015301 164 NFIYVYDLQANKC-----SLRIPAHKSDVNTVCFAD--E-TGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 164 ~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
..|++.-++...+ -..+..|.+.|..++|.. . .+.+|++++ .|..|++-| ...++....+.+|.+.|
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td----c~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD----CGRGQGFHALSGHTGHI 186 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee----cCCCCcceeecCCcccE
Confidence 9999987754332 235677999999999972 2 234566544 455666666 45888899999999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.++- +-++-++++|+.|.+|++||++-..+....... + |. ......
T Consensus 187 laly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~------------------------------~--~~-~gless 232 (350)
T KOG0641|consen 187 LALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND------------------------------F--HD-GGLESS 232 (350)
T ss_pred EEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc------------------------------c--cC-CCcccc
Confidence 8873 345889999999999999999875443322110 0 10 011123
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+.+++..|.|++|++|-.|....+||++.+++++.+..|...|.++.|+|...||.+++.|..|++-|+.......
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999998754433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=219.34 Aligned_cols=291 Identities=19% Similarity=0.334 Sum_probs=230.2
Q ss_pred cCCCCeE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 38 GMNSRVY---TSQFS-NDGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 38 ~h~~~v~---~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.|...|. .+..+ |.+++|+|||.||.|++|+....... .-......|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444455 44444 46778999999999999998754331 11334566888899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-cCCCCeEEEEEecCeEEEEECCCCee--ee--------E
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGSDNFIYVYDLQANKC--SL--------R 179 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~--~~--------~ 179 (409)
+|+...+.......+ ..|..-|.|+++ .++...+++|+-|+.|.+||++++.. +. .
T Consensus 99 ~W~~~~~~~~c~sti-------------r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTI-------------RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred EeecccCcchhHhhh-------------hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 999987642111111 245557999999 78889999999999999999997722 22 2
Q ss_pred Ec-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 180 IP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 180 ~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
+. ++..+|.+++.+ +.+..|++|+..+.+++||.| ..+.+..+++|...|..+..++||..+++++.||+|++|
T Consensus 166 l~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred CCCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 23 788899999999 888999999999999999976 788888899999999999999999999999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
|+.. .+++.++..|. ..+|++..+|+=..+++|+.||.|+
T Consensus 241 dLgq----------------------------------QrCl~T~~vH~------e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 241 DLGQ----------------------------------QRCLATYIVHK------EGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eccc----------------------------------cceeeeEEecc------CceEEEeeCCCcceEEecCCCCcEE
Confidence 9987 56677777777 3467777788889999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|....
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999988533222222566788887776555556677899999998754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-29 Score=199.72 Aligned_cols=363 Identities=16% Similarity=0.227 Sum_probs=244.2
Q ss_pred cceeeEEecCceeEeeccceE-----------EEEeeecCCCceeecCCCCeEEEEECC--CCCEEEEE--eCCCcEEEE
Q 015301 3 VGREVNYSGRGRFSAADSCHV-----------LSRYLPVNGPWKVDGMNSRVYTSQFSN--DGSFFVAA--SQESNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~-----------~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~--~~d~~i~vw 67 (409)
.+.|++.+||-..++++.... +|+-......+.+......|+|++||+ .|.+|+.. +.+..+.||
T Consensus 106 dikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVW 185 (626)
T KOG2106|consen 106 DIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVW 185 (626)
T ss_pred ceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchh
Confidence 356899999888777644332 233333344455667788899999998 34555544 345678999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
|...+.......... ..|....|+|.+..|++....+.+.+|+.+.+.......+.+... ..-|.|
T Consensus 186 dWqk~~~~~~vk~sn---e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e-----------kk~Vl~ 251 (626)
T KOG2106|consen 186 DWQKKAKLGPVKTSN---EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE-----------KKFVLC 251 (626)
T ss_pred hchhhhccCcceecc---ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc-----------ceEEEE
Confidence 998775554443333 378999999977767666668999999998876544333322211 135999
Q ss_pred EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc-----------
Q 015301 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC----------- 216 (409)
Q Consensus 148 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 216 (409)
++|.++|. +++|.++|.|.||+..+.+..+....|.+.|.+++.. .++.+| +|+.|..|..||-..
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchh
Confidence 99999997 7899999999999998888777777999999999998 777555 599999999999210
Q ss_pred ------c-------------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 217 ------F-------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 217 ------~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
. .-.........+|......++.+|+...+++++.|+.+++|+-....-......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 0 000011122346778888999999999999999999999999333222222222
Q ss_pred ccccccccccc-ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-EE
Q 015301 272 RLRDYDWDYRW-MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VA 349 (409)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~ 349 (409)
+.....+.... ++.......+...+-.....+..|.. ...+..+.|+|+|.+||.|+.|+.|+||.+..... ..
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec----CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 22222222111 11111111111111111111222221 23345668999999999999999999999876533 22
Q ss_pred Ee-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.. +.|..+|+.+.||+|+++|.+-+-|-.|..|....
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 22 23448999999999999999999999999994433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=221.56 Aligned_cols=204 Identities=16% Similarity=0.272 Sum_probs=168.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~ 113 (409)
.+.||.+.|..+.||.+ .+|++++.|.+|++|++....++... .|..-|+|++|+| |.+|+++|+-||.++||+
T Consensus 364 ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred hhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 56899999999999975 58999999999999999988666543 4666899999999 789999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---------CCC
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---------AHK 184 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~ 184 (409)
+...+...-....+ -|++++|.|+|++.++|+.+|.+++|+....+...... .|.
T Consensus 439 I~d~~Vv~W~Dl~~----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 439 ISDKKVVDWNDLRD----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred cCcCeeEeehhhhh----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 98877544333332 49999999999999999999999999998777665432 133
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.|+.+.|.|.+.+.+++.+.|..|+|+|.+ ....+..++++.. .-....|+.||++|++++.|..|++|++..
T Consensus 503 -rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 799999998777788888999999999975 5666666666543 234567889999999999999999999865
Q ss_pred Cc
Q 015301 263 MS 264 (409)
Q Consensus 263 ~~ 264 (409)
..
T Consensus 578 ~~ 579 (712)
T KOG0283|consen 578 FN 579 (712)
T ss_pred Cc
Confidence 43
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-30 Score=205.26 Aligned_cols=274 Identities=19% Similarity=0.248 Sum_probs=208.9
Q ss_pred ceeeEEecCcee--EeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 4 GREVNYSGRGRF--SAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~--~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+-.++|||..-+ ..+.+.. +..|... ....++.-....|+++.|..||++||+|...|.|+|+|+.+. .+ ..
T Consensus 29 vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~i--LR 104 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VI--LR 104 (487)
T ss_pred ceeEecCCCCCCceEEecccE-EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HH--HH
Confidence 456889996644 3333333 3333222 222357778899999999999999999999999999996542 22 22
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 157 (409)
...+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+... ... ..+|+..|.+.+|+|. +..+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~-------------l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAE-------------LSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEE-------------ecCCcceeEeeccccCCCeEE
Confidence 45678889999999995 56777888999999999988763 111 1356778999999994 5588
Q ss_pred EEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 158 VAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
++|+.||.|++||.++. ..+.++. |..+|..+.+. |.+.++++++. ..|++||+. ..++.+.....|...|+|
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l-psgs~iasAgG-n~vkVWDl~---~G~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL-PSGSLIASAGG-NSVKVWDLT---TGGQLLTSMFNHNKTVTC 243 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEec-CCCceeeEEEc-CCCCEEEEcCC-CeEEEEEec---CCceehhhhhcccceEEE
Confidence 99999999999999877 5566665 99999999999 78888888764 579999973 344555555559999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+.+..++..|++++-|+.+++||+.+. +.+..+.- ...+
T Consensus 244 L~l~s~~~rLlS~sLD~~VKVfd~t~~----------------------------------Kvv~s~~~-------~~pv 282 (487)
T KOG0310|consen 244 LRLASDSTRLLSGSLDRHVKVFDTTNY----------------------------------KVVHSWKY-------PGPV 282 (487)
T ss_pred EEeecCCceEeecccccceEEEEccce----------------------------------EEEEeeec-------ccce
Confidence 999999999999999999999997762 22222222 2456
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+++.+|+++.++.|..||.+.+-+..
T Consensus 283 Lsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCCCceEEEecccceeeeehhh
Confidence 677899999999999999988876443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-29 Score=215.12 Aligned_cols=230 Identities=12% Similarity=0.163 Sum_probs=171.6
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCe------
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------ 175 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~------ 175 (409)
|+.++.+++|+...... .. ...+|..+|.+++|+|+ +.+|++|+.|+.|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~--v~-------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP--VI-------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CCceeEEEeeecCCCce--EE-------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 55677888888754321 11 11256778999999996 7899999999999999997642
Q ss_pred --eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 176 --CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
++..+.+|...|.+++|+|....+|++++.|+.|++||++ .+.....+. |...|.+++|+|+|.+|++++.|+
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence 3346788999999999994344456799999999999986 444444444 567899999999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS 333 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 333 (409)
.|++||+++ +..+..+.+|...... ..++...|++++.+|++++.
T Consensus 190 ~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 190 HMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred EEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEEc
Confidence 999999998 3445666777643222 33444567788999999887
Q ss_pred CC----eEEEEEccC-CceEEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 334 DN----SVYIYDLVS-GAQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 334 dg----~v~i~d~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|+ .|+|||+++ .+++..+.. +.+.+......+++.++++|+.|+.|++|++..+
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 64 799999985 566665542 2333333334455788999999999999999765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=186.91 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=212.9
Q ss_pred eeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..+.|..+|.++.+..-+ .+|.-......-++.||++.|+|++.+-+.+.++||+.|.++++||+++++++.... .
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~ 92 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-T 92 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-c
Confidence 357888899876664433 455555555556899999999999999999999999999999999999997766532 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 82 KALRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
..+|..+.|+++|++++.+. ..+.|.++|++.........- +...+ ..+...++.+-|.|-++.
T Consensus 93 ---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e--p~~kI------~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 93 ---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE--PYLKI------PTPDSKITSALWGPLGET 161 (327)
T ss_pred ---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC--ceEEe------cCCccceeeeeecccCCE
Confidence 33799999999999888775 456899999985442111100 00000 012246899999999999
Q ss_pred EEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 157 LVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
|++|..||.|.+||+++++ .+...+.|...|+.|.++ ++..++++++.|.+-++||.+ ....++.+. ...+|+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVR----TLEVLKTYT-TERPVN 235 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeecc----ceeeEEEee-eccccc
Confidence 9999999999999999984 455567899999999999 999999999999999999975 556666654 467899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc-ccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT-DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
+.+++|....++.|+..... |+.+...... .+ .+.+...-...+..+++|- .
T Consensus 236 ~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFE------------------ArFyh~i~eEEigrvkGHF------G 288 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFE------------------ARFYHLIFEEEIGRVKGHF------G 288 (327)
T ss_pred ceecccccceEEecCCceee---eeeeecccccchh------------------hhHHHHHHHHHhccccccc------c
Confidence 99999987777776543221 2221100000 00 0000001123344556665 5
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.+.+++|+|+|+..++|++||.|++.-...
T Consensus 289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 567789999999999999999999986543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=200.25 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=210.6
Q ss_pred ecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc
Q 015301 10 SGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW 86 (409)
Q Consensus 10 s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 86 (409)
+|...+..+++.+ ++.+....+....+.||...|+.+.|+|+...+++++.|..|+||........ .....|..
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~ 304 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TSSRPHEE 304 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cccccccc
Confidence 3433455665555 23333333444588999999999999999999999999999999998776432 33556778
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
+|+.+..+|.|.||++++.|+...+.|+.++......... ...-.+++.+|+|||..|.+|..|+.|
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-------------~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-------------TSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-------------cccceeEEeeEcCCceEEeccCCCceE
Confidence 9999999999999999999999999999988764333321 112258999999999999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCe
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRY 245 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 245 (409)
++||+.++..+..+++|+++|..++|+ .+|.+|++++.|+.|++||+|. .+....+.- ....+.++.|.+.|.+
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRK----l~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRK----LKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehh----hcccceeeccccccceeEEEcCCCCe
Confidence 999999999999999999999999999 9999999999999999999983 333333322 2337999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
|+.++.|=.|++++-.+.. ...+..+..|. .....+.|....
T Consensus 447 L~~~g~~l~Vy~~~k~~k~--------------------------------W~~~~~~~~~s------g~st~v~Fg~~a 488 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKS--------------------------------WTEIKELADHS------GLSTGVRFGEHA 488 (506)
T ss_pred EEeecceeEEEEEeccccc--------------------------------ceeeehhhhcc------cccceeeecccc
Confidence 9999877666666533311 23333444443 122334577778
Q ss_pred CEEEEEeCCCeEEEEEc
Q 015301 326 KYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~ 342 (409)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 89999999999888764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=210.81 Aligned_cols=316 Identities=17% Similarity=0.198 Sum_probs=251.3
Q ss_pred ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc
Q 015301 19 DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR 98 (409)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 98 (409)
.+...++.....+..+++.++...|+++.=+|-=+.+|.|..+|+|.++++..++.+...... .++|++++|..||+
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d---~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD---WGRVTSLSFRTDGN 257 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc---ccceeEEEeccCCC
Confidence 334456677777777899999999999999999999999999999999999998666554332 35899999999987
Q ss_pred EE-EEEecCCEEEEEEcCCCccccccceec--eeee---------------------eeee-cCC---------------
Q 015301 99 FL-VYASICAIVNIVDVGSSARESLANVTE--IHKG---------------------LDFS-ADG--------------- 138 (409)
Q Consensus 99 ~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~---------------------~~~~-~~~--------------- 138 (409)
.+ ++|+..|.+.+||++..+......... .... ..|. .++
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 54 566677999999998765432211000 0000 0000 000
Q ss_pred ---------C----------------------------------------------------------------------
Q 015301 139 ---------D---------------------------------------------------------------------- 139 (409)
Q Consensus 139 ---------~---------------------------------------------------------------------- 139 (409)
.
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 0
Q ss_pred ----------------------Cc------ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE---cCCCCCeE
Q 015301 140 ----------------------ED------EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVN 188 (409)
Q Consensus 140 ----------------------~~------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~ 188 (409)
.+ ...+++++.++-|++.+.|...|.|-+|++++|-...++ +.|..+|+
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 12 256889999999999999999999999999999888888 58999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
.++.. .-++.+++++.+|.+++||.. .......+. -...+..+.++.....++.+..|-.|+++|+.+
T Consensus 498 gla~D-~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t------ 565 (910)
T KOG1539|consen 498 GLAVD-GTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT------ 565 (910)
T ss_pred EEEec-CCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh------
Confidence 99998 788899999999999999964 444444443 345678888888888899999999999999987
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
.+.++.|.+|. .-+.+.+|||||++|++++.|++|++||+.++.++
T Consensus 566 ----------------------------~kvvR~f~gh~------nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 566 ----------------------------RKVVREFWGHG------NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ----------------------------hhhhHHhhccc------cceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 45677888887 34567789999999999999999999999999999
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCC-CeEEEEec
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWD-CNIVRWEI 384 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~ 384 (409)
-.+. -..+++.+.|+|+|.+|||+..| .-|++|.=
T Consensus 612 D~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 612 DGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 8886 57789999999999999999988 67999954
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-28 Score=201.50 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=193.5
Q ss_pred ceeeEEecCceeEee-cc-ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAA-DS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~-~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
++.|+|++.+|+... .+ ...-|++...+....+....+.|++++.+|.++.++.|+.||.+..++...+ .+.....+
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I~~~r~l 150 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KITYKRSL 150 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eEEEEeec
Confidence 578999988875444 33 3445667777777788889999999999999999999999998888887776 33333444
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
...++.|.+++|+|++..|+.|+.||.|++||+..+......... ..........-|+++.|..++ .|++|.
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-------~d~l~k~~~~iVWSv~~Lrd~-tI~sgD 222 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-------LDRLSKREPTIVWSVLFLRDS-TIASGD 222 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec-------ccccccCCceEEEEEEEeecC-cEEEec
Confidence 455679999999999999999999999999999988754421111 111112233458899988666 689999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
..|+|.+||...+.+++.+..|.+.|.+++.. ++++.+++++.|+.|..|.................|...|.+++..+
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred CCceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 99999999999999999999999999999999 88899999999999998886422121224444567888999999986
Q ss_pred CCCeEEEEeCCCcEEEeeCCC
Q 015301 242 DGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+ .+++|+.|..+.+-..+.
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred c--eEEecceeeEEEEccccc
Confidence 6 899999999988877655
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=213.08 Aligned_cols=243 Identities=16% Similarity=0.260 Sum_probs=203.3
Q ss_pred cCceeEeeccceEEEEeeecC---------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 11 GRGRFSAADSCHVLSRYLPVN---------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 11 ~dg~~~~~~~~~~~~~~~~~~---------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
|.++|+.+++.+...+.+... ....++.|.+.|+.++...+|+.|+++|.|-+|++|+...+. .......
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 567888887776544433321 135788999999999999999999999999999999998763 2233345
Q ss_pred ccccceEEEEEe-CCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 82 KALRWTITDTSL-SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..|..-|.|+++ .++...+|+|+.|+.|.+||+.++.......... ........++..+|++++.++.|..|++|
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc----cccccCCCCCccceeeeecCCcceEEEec
Confidence 678889999999 8889999999999999999999874422222111 11112222667789999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+..+.+++||.++.+.+..+++|+..|.++..+ .+|..+++++.||+|++||++ ..+++.++..|...|+++..+
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeC
Confidence 999999999999999999999999999999999 999999999999999999976 888999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCC
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
|+-..+.+|+.||.|..=|+++.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999985
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=207.57 Aligned_cols=346 Identities=13% Similarity=0.178 Sum_probs=243.4
Q ss_pred eEEecCceeEeeccceEEEEeeecCC------CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeeeee
Q 015301 7 VNYSGRGRFSAADSCHVLSRYLPVNG------PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-KNWKIQKDI 79 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~~~~~~~~~~~~------~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~ 79 (409)
.-|+|++.++.+.+...-+..+..+. ...+.||.+.|..++|+|.|.+|++.|.|.+-+++-.- .........
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 45788887766655443333333222 23567999999999999999999999999999998754 222344455
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc-----------------cee------------ceee
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA-----------------NVT------------EIHK 130 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-----------------~~~------------~~~~ 130 (409)
..+-|...++|++|-+....+++|.....+|+|+....-..... ..+ ....
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 55667778999999987778888999999999987531100000 000 0000
Q ss_pred eee----eec------------CC----------------CCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCC
Q 015301 131 GLD----FSA------------DG----------------DEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQA 173 (409)
Q Consensus 131 ~~~----~~~------------~~----------------~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~ 173 (409)
+.. +.. .. -+|...|++++.+|+++++++++.. ..|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 000 000 00 0799999999999999999998763 5799999999
Q ss_pred CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 174 NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
...++.+.+|.-.|+.++|+ |++++|++.+.|.++.+|...............+.|..-|..+.|+|++.++++++.|+
T Consensus 562 W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhheecccceEEEEEEEC-CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 98889999999999999999 99999999999999999996432222223344778999999999999999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~ 332 (409)
.|++|....... +.+..+........+....+.+.+.++ +..+++|-
T Consensus 641 ~VkVW~~~~~~d--------------------------------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 641 KVKVWEEPDLRD--------------------------------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred eEEEEeccCchh--------------------------------hhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 999999877421 111111111111222223333333333 34788999
Q ss_pred CCCeEEEEEccCC-------c-----eEEEeccCCcceeeeEEecCc--------C--eEEeecCCCeEEEEecC
Q 015301 333 SDNSVYIYDLVSG-------A-----QVAKLDFHNAPVRDCCWHPIY--------P--MLISSSWDCNIVRWEIP 385 (409)
Q Consensus 333 ~dg~v~i~d~~~~-------~-----~~~~~~~~~~~v~~~~~s~~~--------~--~l~s~~~dg~i~iw~~~ 385 (409)
+.|.|.+|....- . .+....+|...|+.+.|.|.. . .|++|+.|..++++++.
T Consensus 689 e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 689 EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999999996511 1 111223577899999999762 2 57999999999999874
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=220.62 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=205.7
Q ss_pred ccceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 84 LRWTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
+...|.++..+|++..+++|+ .|+.+++|+.+.-...........+. ....-..|.+.|.|+.|+|||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k---~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK---HLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccch---hheeeccccCceeEEEECCCCCeEeecc
Confidence 344699999999999999999 89999999876422111110000000 1111235777999999999999999999
Q ss_pred ecCeEEEEECCC------------------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce
Q 015301 162 SDNFIYVYDLQA------------------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 162 ~d~~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 223 (409)
+|+.|.||+... .+.+..+.+|...|..++|+ |++.+|++++.|++|.+|+.+ +...
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----tF~~ 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----TFEL 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----ccee
Confidence 999999999762 13456788999999999999 799999999999999999975 6688
Q ss_pred eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 224 NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++.+.. ..+.+
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~----------------------------------i~k~I 209 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG----------------------------------IEKSI 209 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccce----------------------------------eeEee
Confidence 99999999999999999999999999999999999977632 22333
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeC----CCeEEEEEccCCceEEEeccCCcceeeeEEecC-----cC------
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI-----YP------ 368 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------ 368 (409)
.++............+.|||||++|++... -..+.|.+-.+.+.-..+-+|.+++.++.|+|. .+
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence 333222233345567789999999998743 346889888888888899999999999999982 11
Q ss_pred ------eEEeecCCCeEEEEecCCC
Q 015301 369 ------MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 369 ------~l~s~~~dg~i~iw~~~~~ 387 (409)
.+|+|+.|++|.||.....
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCC
Confidence 6788999999999998543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=216.20 Aligned_cols=293 Identities=19% Similarity=0.279 Sum_probs=218.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee-ee---cccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcC
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD-IE---TKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~ 115 (409)
....+|...++-..++.++. ..++||.+......... .. .......+..+.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 44566777788888888875 46888887654221111 11 111122466778875 47899999999999999998
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........... ..|...++++.|++ ...+|++|+.||.|++||++..+...++.+....|.+++|+|
T Consensus 119 k~~rnk~l~~f------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 119 KSIRNKLLTVF------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred ccccchhhhHh------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 74322222222 24566899999998 556889999999999999999998888988899999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
..++.|+++...|.+++||+| ....+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+...
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--------- 254 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--------- 254 (839)
T ss_pred CCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---------
Confidence 999999999999999999998 46677788899999999999999999999999999999999986321
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCC-ceEEEe
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSG-AQVAKL 351 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~-~~~~~~ 351 (409)
....++... ..+.+..|.|+. ...||+++. |-.|+|||++.. -+..++
T Consensus 255 -----------------------~~~~tInTi---apv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 255 -----------------------KPKHTINTI---APVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred -----------------------cceeEEeec---ceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccceee
Confidence 111111111 122233344442 245666654 788999999765 456788
Q ss_pred ccCCcceeeeEEec-CcCeEEeecCCCeEEEEecCCC
Q 015301 352 DFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 352 ~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..|...++.++|.. |...|.+++.||.|..-.+.+.
T Consensus 306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 88999999999965 3448999999999887666544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=211.24 Aligned_cols=280 Identities=13% Similarity=0.175 Sum_probs=217.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
.+|+..-+.++|.|+|.++.+++.||.|++|+............. +...|.+++.. +.+|++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 478999999999999999999999999999998766332222221 33467777654 55899999999999999998
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
++......... .++.+++++-+|++++.|+.|-.|++.++........+.+|.++|.++.|+ |+
T Consensus 86 ~~~~~iL~Rft---------------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 86 GEEDTILARFT---------------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred CCccceeeeee---------------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 87653333221 269999999999999999999999999999999999999999999999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeec--------cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+++||+.+.||.|++||+. .+.....+.+ ....+..++|+|++..++..+.|+.|++|+.....
T Consensus 150 ~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we---- 221 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE---- 221 (933)
T ss_pred CCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce----
Confidence 9999999999999999975 4443333322 13456788999999899999999999999988733
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
....+....... .+...+|||+|+|||+++.||.|.|||+++-+.
T Consensus 222 ------------------------------~~f~Lr~~~~ss----~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~- 266 (933)
T KOG1274|consen 222 ------------------------------LQFKLRDKLSSS----KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER- 266 (933)
T ss_pred ------------------------------eheeeccccccc----ceEEEEEcCCCcEEeeeccCCcEEEEecccchh-
Confidence 223333322111 134557999999999999999999999988322
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
......|.+++|.|+...+-.-...|...+|
T Consensus 267 ---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 ---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 2235689999999998865554445555544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=204.35 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=226.6
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc--EEEEEec
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYASI 105 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 105 (409)
+|......+.||++.|.|+...|.|.+||+|+.||+|+||.+.++.++.... .. +.|.+++|+|.+. .||++-.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d---~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FD---SEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ec---ceeEEEEecCCCCceeEEEEec
Confidence 3445556889999999999999999999999999999999999998777644 22 3699999999764 4444443
Q ss_pred CCEEEEEEcCCCccccc-------cce-ecee---eeeeeecC-----------CCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 106 CAIVNIVDVGSSARESL-------ANV-TEIH---KGLDFSAD-----------GDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~-------~~~-~~~~---~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+.+.+..-+..... ... .... ....+... ...|...|..+.|+..|.||++...
T Consensus 464 -~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 464 -ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred -CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 3355555433311100 000 0000 00011111 0135667999999999999998765
Q ss_pred --cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 --DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 --d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
...|.|.++...+...-+....+.|.++.|+ |...+|++++. ..|+|||+- ....++.+......|..++.+
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeeeec
Confidence 3579999998777666666667889999999 55566666654 679999974 566777777777889999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|.|..|+.++.|+.+..+|+.-. .++.+.+..|. ..+.+++
T Consensus 617 p~GDnli~gs~d~k~~WfDldls---------------------------------skPyk~lr~H~------~avr~Va 657 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLS---------------------------------SKPYKTLRLHE------KAVRSVA 657 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccC---------------------------------cchhHHhhhhh------hhhhhhh
Confidence 99999999999999999998762 24455566665 3445667
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcc-------CC--ceEEEeccCCcc----eeeeEEecCcCeEEeecCCCeEEEE
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLV-------SG--AQVAKLDFHNAP----VRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~-------~~--~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
|++.-.++++|+.||++.||.-. +. -++..+++|... |.+..|+|...+|++++.||+|++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 88888899999999999998532 11 356788899765 9999999999999999999999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=207.09 Aligned_cols=375 Identities=15% Similarity=0.201 Sum_probs=237.6
Q ss_pred eeeEEecCceeEeeccceEEEEeee--cCCCceeecCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLP--VNGPWKVDGMNSRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.|+.+|-....+......+.-+-+ ....+.+..|..+++|++||++|+|+|+|- ....++||++.....+. +
T Consensus 41 ~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVA---E 117 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVA---E 117 (1080)
T ss_pred CcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchh---h
Confidence 4455566544444322222222222 233457778999999999999999999985 56789999998765444 4
Q ss_pred cccccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCC-------------------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGD------------------- 139 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 139 (409)
+..|+..|+|++|+|.++|+++.+. |-.|.+||++.+......++........|..++.
T Consensus 118 fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 118 FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 5667779999999999999997764 4467888776554433333333333333333321
Q ss_pred ----------------------------------Cccee--------------------------eEEEEEcCCCCeEEE
Q 015301 140 ----------------------------------EDEFG--------------------------IFSVKFSTDGQELVA 159 (409)
Q Consensus 140 ----------------------------------~~~~~--------------------------v~~~~~~~~~~~l~~ 159 (409)
+.... .+|++. +.++|++
T Consensus 198 KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~c 275 (1080)
T KOG1408|consen 198 KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIAC 275 (1080)
T ss_pred cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEE
Confidence 01111 122222 4568889
Q ss_pred EEecCeEEEEECCCCeeeeEEcC-C-----------------------CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPA-H-----------------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~-~-----------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
|+.+|.|++++.++-..+.+++. | --...++.|. +....|.+...|..+++||+|
T Consensus 276 gCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 276 GCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred eeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEecc
Confidence 99999999998776544433320 0 1123466777 677889899999999999999
Q ss_pred ccccCCceeeeeeccccceeEEEEcCC-----------CCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEGITFIDSRRD-----------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.....++... +.-|...|+.+.--|. ...+++++.|++|++||+........... +.+.-+...+.
T Consensus 355 D~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR--Nils~~l~ki~ 431 (1080)
T KOG1408|consen 355 DVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR--NILSANLSKIP 431 (1080)
T ss_pred ccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec--ccchhhhhcCc
Confidence 6555555443 4457777777765441 23489999999999999987322222111 11111111111
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
+......+....+..+..-..... ....-.+.+++.||+|++||+|..-|.++||++.+.+....+.+|...|.++.|+
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred cccCchhhhhhccCCcccccchhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence 111111111111111100000000 0001123466899999999999999999999999999999999999999999998
Q ss_pred c---CcCeEEeecCCCeEEEEecCCCcc
Q 015301 365 P---IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 365 ~---~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. ..++|++++.|..|.++|+...-.
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccc
Confidence 5 245999999999999999976443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=185.04 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=197.5
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc--EEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR--FLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~ 110 (409)
.+.+..|.++|++++.+ +.++|+||.|-+|+|||+....++..+.. |.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~---HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS---HAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---cccceEEEEecCCcchhheeeecCCCcEE
Confidence 35677999999999986 79999999999999999998766665444 566999999998764 899999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+|+....+..... ..|...|+.++.+|.+++-++.+.|+.++.||+-+|+.-..++- ....+.+
T Consensus 111 iw~~~~W~~~~sl---------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v 174 (362)
T KOG0294|consen 111 IWRVGSWELLKSL---------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLV 174 (362)
T ss_pred EEEcCCeEEeeee---------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceee
Confidence 9999876543222 24566799999999999999999999999999998876655542 2233559
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
.|+ +.|.+++.+..+ .|-+|.+. .......+.. ...+.++.|. ++..|++|+.|+.|.+||...
T Consensus 175 ~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-------- 238 (362)
T KOG0294|consen 175 SWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS-------- 238 (362)
T ss_pred EEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC--------
Confidence 999 888888887765 48888853 3333333322 2446666665 577899999999999999886
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-----
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----- 345 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----- 345 (409)
..+...+.+|.......... -.|++.+|++++.||.|+|||++..
T Consensus 239 --------------------------~~~~~~~~AH~~RVK~i~~~----~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 239 --------------------------DTPLTEFLAHENRVKDIASY----TNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred --------------------------CccceeeecchhheeeeEEE----ecCCceEEEEeccCceEEEEEccccccCCc
Confidence 45567777887544433322 2356889999999999999999765
Q ss_pred ceEEEeccCCcceeeeEE
Q 015301 346 AQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~ 363 (409)
+++..+.. ...++|+..
T Consensus 289 ~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 289 TLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ceeEEeec-CCccceeee
Confidence 34444442 445555543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=203.71 Aligned_cols=266 Identities=15% Similarity=0.204 Sum_probs=198.7
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....+|...|.++++.|.|..|++|+.|..|++||+......... |..........|.++.|++.|..|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------fr~l~P~E~h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------FRQLQPCETHQINSLQYSVTGDQIL 230 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh----------hhccCcccccccceeeecCCCCeEE
Confidence 445667789999999999999999999999999999765432111 1111123344799999999999999
Q ss_pred EEEecCeEEEEECCCCeeee------------EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 159 AAGSDNFIYVYDLQANKCSL------------RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
+.+.....+|+|-...+... ..++|...++|.+|+|.+.+.+++++.||+++|||+.......+.+..
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 99888999999975444332 236899999999999888999999999999999998633222222221
Q ss_pred e--eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 227 L--MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 227 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
. .+..-+++.++|+++++.|++|+.||.|.+|+..+.... .....-.
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~vk~ 359 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKVKD 359 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEeee
Confidence 1 123457889999999999999999999999998763321 1123334
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccC--CcceeeeEEecCcCeEEeec------C
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFH--NAPVRDCCWHPIYPMLISSS------W 375 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~------~ 375 (409)
.|.... .+.++.||+||++|++-+.|+++++||++.. +++....+- .-+-+.++|||+.++|++|+ .
T Consensus 360 AH~~g~----~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 360 AHLPGQ----DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred ccCCCC----ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 444322 3456689999999999999999999999875 455555443 23568899999999999985 3
Q ss_pred CCeEEEEecCCCcc
Q 015301 376 DCNIVRWEIPGIGE 389 (409)
Q Consensus 376 dg~i~iw~~~~~~~ 389 (409)
.|.+.++|..+.+.
T Consensus 436 ~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDT 449 (641)
T ss_pred CceEEEEeccceee
Confidence 57899998766543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=204.66 Aligned_cols=370 Identities=13% Similarity=0.105 Sum_probs=253.4
Q ss_pred eeeEEec-CceeEee-ccceEEEEeeecC-----CCceeecCCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCe-
Q 015301 5 REVNYSG-RGRFSAA-DSCHVLSRYLPVN-----GPWKVDGMNSRVYTSQFSNDGS---FFVAASQESNIKVYNVDKNW- 73 (409)
Q Consensus 5 ~~~~~s~-dg~~~~~-~~~~~~~~~~~~~-----~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~- 73 (409)
-|+++.+ .++|+.+ ++......+.... ....+.||.+.|.+++|...+. +||++|.|..|+||.+.-+.
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 4666677 4666555 4444444443333 2347889999999999987554 78999999999999974321
Q ss_pred -------------------eee-ee-------eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee
Q 015301 74 -------------------KIQ-KD-------IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 74 -------------------~~~-~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (409)
... .. ....+|+.-|+++.|+|.+..|++++.|.++.+|...+..-.-.....
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 000 00 113478899999999999999999999999999988765322111111
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC---eeeeEEcCCCCCeEEEEEeCCCCcEEEEe
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
-... .+...+....-|+|+++.+++-+..|..++|-.+.. .+...+.+|.+.|.+++|. |.|++|++.
T Consensus 309 lGe~--------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsv 379 (764)
T KOG1063|consen 309 LGEV--------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSV 379 (764)
T ss_pred eecc--------cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEe
Confidence 1110 023446889999999999999999999999983221 2344568999999999999 899999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc----------ccccc----
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS----------SNTTD---- 269 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~---- 269 (409)
+.|.+-|+|-.-....+...+..-+-|...++|+++-+....+++|.....+++|+....- +....
T Consensus 380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred ccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 9999999987421111123334445577889999998866779999999999999875410 00000
Q ss_pred -ccccccccccccccc--------------------------cccc-ceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 270 -NSRLRDYDWDYRWME--------------------------YPSY-ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 270 -~~~~~~~~~~~~~~~--------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
......+........ .++. ...........++.+.||. .-+++++.
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG------yEv~~l~~ 533 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG------YEVYALAI 533 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc------eeEEEEEe
Confidence 000000000000000 0000 0000111112233334444 45678889
Q ss_pred cCCCCEEEEEeCC-----CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 322 STAQKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 322 s~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+|+|+++|+++.. ..|++|+..+......+.+|+-.|+.|+||||+++|++.|.|.++.+|+..+...
T Consensus 534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence 9999999999864 4699999999999999999999999999999999999999999999999865443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=185.38 Aligned_cols=244 Identities=18% Similarity=0.244 Sum_probs=182.2
Q ss_pred ccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 84 LRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 84 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
....|.+++||| ...+++.++.||+||+|+++.. .... +.. ..|.++|.+++|+.+|..+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~------------~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQ------------QSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhh------------hccCCCeEEEEEccCCceEEeec
Confidence 344799999999 4566668899999999999874 2221 111 24566899999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC--cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
.|+.+++||+.+++ +..+..|.++|..+.|- +.. ..|++|+.|.+|+.||+| ...++..+. -.+.+.++..
T Consensus 92 ~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred cCCceEEEEccCCC-eeeeeecccceeEEEEe-cCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeehhc
Confidence 99999999999995 55677899999999998 444 489999999999999987 555555554 3455666554
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
- ..+++++..+..|.+|++++......... .......+ ++
T Consensus 165 ~--~pm~vVata~r~i~vynL~n~~te~k~~~-----------------------------------SpLk~Q~R---~v 204 (347)
T KOG0647|consen 165 L--YPMAVVATAERHIAVYNLENPPTEFKRIE-----------------------------------SPLKWQTR---CV 204 (347)
T ss_pred c--CceeEEEecCCcEEEEEcCCCcchhhhhc-----------------------------------Ccccceee---EE
Confidence 3 45788889999999999987432211100 00111112 22
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCC--ceEEEeccCCc---------ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+.-+|....|.|+-+|++.|..+..+ +.-.+++.|.. .|++++|+|....|+|+|.||++.+||-+...
T Consensus 205 a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence 34446666799999999999999887 44456666652 57889999999999999999999999976543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=184.73 Aligned_cols=289 Identities=19% Similarity=0.273 Sum_probs=208.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
-.|+.|++.|.+||+|+.||.|.|||+.+.. +.+ ...+|..+|++++||+||+.|++++.|..|.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998863 333 3456777999999999999999999999999999998875444
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcC----CC-CCeEEEEEeCCC
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPA----HK-SDVNTVCFADET 196 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~-~~v~~~~~~~~~ 196 (409)
..... +|+.+.|+|... ..++.-.+..-.+.++..++.. .++. .. ....+..|. +.
T Consensus 103 irf~s----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fd-r~ 164 (405)
T KOG1273|consen 103 IRFDS----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFD-RR 164 (405)
T ss_pred EEccC----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccccccccc-CC
Confidence 43322 699999999443 3333333444555565543211 1111 11 111223466 88
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
|+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++..........
T Consensus 165 g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e---- 236 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE---- 236 (405)
T ss_pred CCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC----
Confidence 9999999999999999954 667777666555 7889999999999999999999999999875211100000
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~ 354 (409)
..+.+.+..--.. ...-+.+||.+|.|+++|+. ...++||.-..|..++.+.|.
T Consensus 237 ---------------------~e~~~K~qDvVNk----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 237 ---------------------VEPEHKLQDVVNK----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred ---------------------cChhHHHHHHHhh----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 0000111000000 01113368889999988875 467999999999999999988
Q ss_pred C-cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 355 N-APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 355 ~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
. ....++.|+|-...+++- ..|.+++|....
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEeec
Confidence 7 578899999998888888 679999998754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=202.28 Aligned_cols=250 Identities=17% Similarity=0.202 Sum_probs=204.0
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....|.+.+..+.|-++...|++|+.|..|++|++...+......+. +..++|+++.|.++++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-------------Gs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-------------GSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-------------ccCCCcceeeecCCCceEEe
Confidence 34567889999999999999999999999999999877743333222 22346999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS 239 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (409)
++.|+.+++|++.+.+...++.+|.+.|+++.|. .....+++|+.|.+|++||+. ...+.+... ....+..|..
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceEe
Confidence 9999999999999999999999999999999998 666669999999999999975 555555443 2345666666
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+ ...++++..|+.|++||.+.. .+......+ ..+.++
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~----------------------------------~~~~sv~~g-------g~vtSl 347 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSA----------------------------------DKTRSVPLG-------GRVTSL 347 (459)
T ss_pred c--ceeeeecccccceEEEeccCC----------------------------------ceeeEeecC-------cceeeE
Confidence 5 556889999999999999883 333333333 235677
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC----CcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH----NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..++++..|.+.+.|.++.+.|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.+++-+.
T Consensus 348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 88899999999999999999999999888877542 2348899999999999999999999999999876553
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=191.79 Aligned_cols=333 Identities=15% Similarity=0.205 Sum_probs=236.1
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---------
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--------- 73 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--------- 73 (409)
.|++|.++|.-+..++...+..+-+..... ....|.+.|.++..-.+|.+|- |+.|+.|..||-.-..
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 589999999988887766555555544332 3348999999999999998655 9999999999932100
Q ss_pred --eee--------------------------eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 74 --KIQ--------------------------KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 74 --~~~--------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.+. ......+|......++.+|+.+.+++++.|+.+++|+ ..+.......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 000 0111224555677889999999999999999999999 3333222222
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD 205 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 205 (409)
. .++.++.|+|.| .++.|+..|...+.|.++...+..-.. +.++++++|+ |++.+||.|+.
T Consensus 407 ~----------------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvgs~ 467 (626)
T KOG2106|consen 407 E----------------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVGSH 467 (626)
T ss_pred c----------------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEecC
Confidence 1 168999999999 899999999999999999666554444 8999999999 99999999999
Q ss_pred CCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
|+.|++|.+. ..+...... ..+..+|+.+.|++|++++.+.+.|-.|..|. ... +..... ..+..|......
T Consensus 468 d~~iyiy~Vs---~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~-~~~~ts--~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 468 DNHIYIYRVS---ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSE-CKQITS--VKDVKWATYTCT 540 (626)
T ss_pred CCeEEEEEEC---CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-ccc-Ccccce--ecceeeeeeEEE
Confidence 9999999985 233333332 23348999999999999999999999999993 221 111111 222222211000
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC---ceEEEeccCCcceeee
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---AQVAKLDFHNAPVRDC 361 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~ 361 (409)
.. ...+-+.. ...+...+-+.+++++|+|.+.|.|++|...-- .+..++.+|.+-|+++
T Consensus 541 lG-------------F~v~g~s~-----~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 541 LG-------------FEVFGGSD-----GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred EE-------------EEEecccC-----CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEE
Confidence 00 00000000 001112234456789999999999999987543 3456778999999999
Q ss_pred EEecCcCeEEeecCCCeEEEEec
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+|.-+...|++.+.|..|..|++
T Consensus 603 ~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 603 AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEeeCCceEEecCCCceEEEEEe
Confidence 99998888888889999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=203.73 Aligned_cols=296 Identities=21% Similarity=0.229 Sum_probs=214.5
Q ss_pred EEECC---CCCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 46 SQFSN---DGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 46 ~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
..|++ ....||.+.+||.|.++|....... .++.....|...|..+.|-|....|++++.|.++++||+.+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 56665 3457899999999999998754211 22344567888999999999778899999999999999998876
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCe--------------------ee-
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANK--------------------CS- 177 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~--------------------~~- 177 (409)
..... ..+|.+.|.+++|.| +...|++|+.||.|.|||++-.. +.
T Consensus 135 ~G~~~-------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 135 VGGRL-------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eccee-------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 44321 126777899999999 45578899999999999986322 00
Q ss_pred ------eEEcCCCCCeEE---EEEeCCCCcEEEEeeC-CCeEEEecccccccCCc----eeeeeecc---ccceeEEEEc
Q 015301 178 ------LRIPAHKSDVNT---VCFADETGHLIFSGSD-DSLCKVWDRRCFISKGR----ANGVLMGH---LEGITFIDSR 240 (409)
Q Consensus 178 ------~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~----~~~~~~~~---~~~v~~~~~~ 240 (409)
.....+...|.+ +.+. .|...|++++. |+.|++||+|....... ....+..| .-.+.++...
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred hhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 011233344444 4444 68888998887 99999999984322111 11112223 3457778888
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
..|.+|++.+.|+.|++||+..... .++..+.++....... .-.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~v----ks~ 324 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYV----KSE 324 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeee----eee
Confidence 8889999999999999999988442 2334444443322222 224
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCcccC
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+|++.++++|+.|...++|.+.+.+ ....+.+|...|++++|.|..- -+++++.|..+++|++..+.+..
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 78899999999999999999998865 4667789999999999988544 57778999999999997766554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=182.75 Aligned_cols=281 Identities=17% Similarity=0.173 Sum_probs=200.2
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
-.+|.+-|+|+.|.+.|+.+|||+.|++|+|||.+.. ........-+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3589999999999999999999999999999996544 34444555677888999999965 48999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCee------eeEEc---
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKC------SLRIP--- 181 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~--- 181 (409)
.-........... ... ..........|+++.|.| -|-.+++++.||.++||+....-. ...++
T Consensus 89 EE~~~~~~~~~~~--Wv~----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 89 EEQEKSEEAHGRR--WVR----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eecccccccccce--eEE----EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 8642221111000 000 011112344699999999 477899999999999998754322 22222
Q ss_pred ----CCCCCeEEEEEeCC--CCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCC----CCeE
Q 015301 182 ----AHKSDVNTVCFADE--TGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD----GRYF 246 (409)
Q Consensus 182 ----~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l 246 (409)
.+..+..|+.|+|. ...+|++|+.+ +.++||...........+..+.+|..+|+.++|.|+ -.+|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 35667889999842 34578887765 478999865433344566678899999999999996 3478
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
++++.|| |+||.++....... . +
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~-----------------------------------~---------------------e 265 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIE-----------------------------------E---------------------E 265 (361)
T ss_pred EEeecCc-EEEEEEeeccchhh-----------------------------------h---------------------h
Confidence 9999999 99999875211100 0 0
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-+.+...-+. + .-+.+..+.+|.+.|..+.|+-.|..|++.|.||+|++|...
T Consensus 266 e~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 266 EVLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 0000111111 1 224567788999999999999999999999999999999764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=194.48 Aligned_cols=271 Identities=17% Similarity=0.194 Sum_probs=205.4
Q ss_pred EeCC-CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeee
Q 015301 58 ASQE-SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFS 135 (409)
Q Consensus 58 ~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (409)
++.| .++.+||+.++....+....... .-.++..- .+.+++++. ....+.+|.+...........
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---------- 79 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLA--QAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV---------- 79 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccc--cchhhhhh-chhheeeecccCccccccccCchhhhhhhcc----------
Confidence 3334 45999999999665554322111 11111111 235676665 445799999876554331111
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ .|+.+|++|+.||.|.+|++.
T Consensus 80 -----~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 80 -----LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred -----cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEE
Confidence 12269999999999999988899999999999999999999999999999999 999999999999999999875
Q ss_pred cc-----ccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 216 CF-----ISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 216 ~~-----~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
.. .....+...+..|.-+|+.+...+. ..++++++.|.++++||+...
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------------------------- 208 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------------------------- 208 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-------------------------
Confidence 32 1245677888999999999987664 458999999999999999873
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC----------------ceEEEec
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------------AQVAKLD 352 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----------------~~~~~~~ 352 (409)
..+..+.-. ..+.+++.+|-+..+++|+++|.|.+.++... ..+..+.
T Consensus 209 ---------~LLlti~fp-------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 209 ---------VLLLTITFP-------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred ---------eeeEEEecC-------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 233332222 22334567788999999999999999887542 2356677
Q ss_pred cCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 353 FHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 353 ~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+|.+ .|++++.+-||.+|++|+.||.|.|||+.+.+
T Consensus 273 Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 8988 99999999999999999999999999997654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=181.37 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=185.7
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.++.|+|.+..|++++.||.+++||+.......... |..++.+++|.++ ..+++|+.||
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~----------------~~~plL~c~F~d~-~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK----------------HGAPLLDCAFADE-STIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee----------------cCCceeeeeccCC-ceEEEeccCc
Confidence 3479999999999999999999999999998875433332 3447999999874 4689999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.|+.+|+.++... .+..|..+|.|+.++ +..+.+++|++|++|++||.| .......+. ....|.++... ++
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~--g~ 146 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS--GN 146 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc--CC
Confidence 9999999988754 456699999999999 778889999999999999987 222223332 23478877765 77
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
.|++|+.|..+.+||+++.....+.. .......+ -++++-|+
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r-----------------------------------eS~lkyqt---R~v~~~pn 188 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR-----------------------------------ESSLKYQT---RCVALVPN 188 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc-----------------------------------cccceeEE---EEEEEecC
Confidence 89999999999999999855332111 01111122 23355567
Q ss_pred CCEEEEEeCCCeEEEEEccCC----ceEEEeccCCc---------ceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 325 QKYIYTGSSDNSVYIYDLVSG----AQVAKLDFHNA---------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.=.++++-||+|.+=.++.. +.-..++.|.. +|++|+|+|-...|+||+.||.|.+||+.+.+..
T Consensus 189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 888999999999988776655 34556666632 8999999999999999999999999999876543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-26 Score=193.93 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=193.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCCCccccccceeceee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
++.+++++.|+.|++||+.++...... .. + ..+.+++|+|+++.+ ++++.++.|++||..+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~--~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PV--G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-EC--C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 357889999999999999887554443 22 2 246789999999877 5667889999999987654321110
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-e
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-L 208 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~ 208 (409)
...+..++|+|+++.++++ ..++.|.+||+.+.+.+..+.. ...+.+++|+ +++.++++++.++ .
T Consensus 72 -----------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 72 -----------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTNM 138 (300)
T ss_pred -----------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCCe
Confidence 0124568899999877655 4589999999998887777653 3456889999 8899998888765 4
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
+.+||.+ ......... .......++|+|++++|+++ ..++.|.+||+++.+..
T Consensus 139 ~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~--------------------- 192 (300)
T TIGR03866 139 AHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI--------------------- 192 (300)
T ss_pred EEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee---------------------
Confidence 6677864 333333322 23345779999999988655 45899999999874321
Q ss_pred cceeccccCccceeeeeccccee-eeeEEEEeeeecCCCCEEEEE-eCCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 288 YARRLKHPHDQSLATYKGHSVLR-TLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+..+.... ........+.++|++++++++ ..++.+.+||+.+++.+..+. +...+.+++|+|
T Consensus 193 -------------~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 258 (300)
T TIGR03866 193 -------------KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP 258 (300)
T ss_pred -------------eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC
Confidence 1111000000 000011234688999986554 456789999999888876654 455799999999
Q ss_pred CcCeEEee-cCCCeEEEEecCCCcc
Q 015301 366 IYPMLISS-SWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l~s~-~~dg~i~iw~~~~~~~ 389 (409)
++++|+++ +.+|.|.+||+.+.+.
T Consensus 259 ~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 259 DEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99988876 5689999999988653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=183.89 Aligned_cols=282 Identities=21% Similarity=0.281 Sum_probs=214.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-----------eeeeeecccccceEEEEEeC-------CCCcEEEEEe
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-----------IQKDIETKALRWTITDTSLS-------PDQRFLVYAS 104 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~ 104 (409)
...+.|||||..|++-+.|..+.+|++....- ....... .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45678999999999999999999999863210 0011111 112367777774 6778999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC-CCCeee--eEE-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL-QANKCS--LRI- 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~~~~--~~~- 180 (409)
.+.-|++||.-+++........+.... -....+++|+|||.+|++|. ...|+++|+ +.|... ...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de----------~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDE----------YTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHh----------hhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 999999999999987666554433222 12477899999999998774 688999999 444322 111
Q ss_pred ----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcE
Q 015301 181 ----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTT 255 (409)
Q Consensus 181 ----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i 255 (409)
.+..+-+.+++|+|.+...++.|+....+-||. .....++..+.+|.+.|+.+.|.++|+.|++|.. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~----~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN----DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEe----cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 233678899999988888999999988888877 3478888889999999999999999999999886 7789
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
..||++... .++..+..|.. .+..+..|. ..|++++|++|+.||
T Consensus 276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~FD--ld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILFD--LDPKGEILASGDTDG 319 (406)
T ss_pred EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEEe--cCCCCceeeccCCCc
Confidence 999999732 23333444432 122234443 458899999999999
Q ss_pred eEEEEEccC-CceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 336 SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 336 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
.|++||+++ +..+..+..|+..|+.++++|--.++++++..
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999998 77788888899999999999998888888754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=177.97 Aligned_cols=258 Identities=19% Similarity=0.230 Sum_probs=196.7
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAA 160 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 160 (409)
.|+..|..+...-.|+.||+++.|++|+|+.++....... .....+|.+||..++|.. -|..|+++
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l------------l~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL------------LAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee------------eeEecCCCCCeeEEeecccccCcEeeEe
Confidence 4666777777777899999999999999999987764211 122247888999999976 79999999
Q ss_pred EecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 161 GSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+.||.|.||.-++++.. .....|...|++++|.|.+ +-.|++++.||.|.|.+.+.. ...........|.-.|+++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhcccccccee
Confidence 99999999998887543 3456799999999999643 567889999999999998732 1334445567899999999
Q ss_pred EEcCC---C-----------CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 238 DSRRD---G-----------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 238 ~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
+|.|. | +.|++|+.|..|+||+..+.. ...-..+
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--------------------------------w~~e~~l 203 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--------------------------------WKLERTL 203 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------------hhhhhhh
Confidence 99985 4 569999999999999988731 1222346
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-c--eEEEeccCCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-A--QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
.+|.... ....++|...--..+||+++.||+|.||..... + ....++.....+..++||..|+.|+.++.|+.|.
T Consensus 204 ~~H~dwV--RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 204 EGHKDWV--RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhcchhh--hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 6666322 233445554444578999999999999987632 1 1223344567899999999999999999999999
Q ss_pred EEecCCC
Q 015301 381 RWEIPGI 387 (409)
Q Consensus 381 iw~~~~~ 387 (409)
+|.-...
T Consensus 282 lwke~~~ 288 (299)
T KOG1332|consen 282 LWKENVD 288 (299)
T ss_pred EEEeCCC
Confidence 9986543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=202.59 Aligned_cols=251 Identities=16% Similarity=0.226 Sum_probs=202.9
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc-cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.|...-+.++|.|+|++|++++.||.|++|+..... ....... +...|.+++. ++.+|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---------------~g~~v~~ia~--~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---------------SGELVSSIAC--YSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---------------cCceeEEEee--cccceEEee
Confidence 466678999999999999999999999999987663 2211111 1224666655 556899999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.+++|.+|.+.+++.-..+...+-++.+++|+ .+|++++.|+.|-.|++.++. .......+++|.++|.++.|+|
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcC
Confidence 99999999999988766666677899999999 999999999999999999964 6777888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++.+|++.+.||.|++||+.+............... ....+.+..++|
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~--------------------------------~~~s~i~~~~aW 196 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE--------------------------------FILSRICTRLAW 196 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCcccc--------------------------------ccccceeeeeee
Confidence 999999999999999999997543332211111000 011345567789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++..++....|+.|++|+..+.+....+.. +...+.+++|+|.|+|||+++.||.|.|||+++.
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 99988899999999999999999988887753 4555999999999999999999999999999963
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=189.76 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=217.9
Q ss_pred CEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
.+++++. ....+.+|.+.............+ +|.+++-+|+|.+|+.|+..|.|++|.+.++.......
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg---~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG---PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhccccc---ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 5565554 345789999877655543333444 89999999999999999899999999999998654432
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---------CCeeeeEEcCCCCCeEEEEEeCC-CCcEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---------ANKCSLRIPAHKSDVNTVCFADE-TGHLIF 201 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~ 201 (409)
.|...|+++.|+.||.+|++|+.||.|.+|++. +-++...+..|+-+|+++...+. ....++
T Consensus 121 --------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 121 --------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 455579999999999999999999999999863 34667788899999999998742 456899
Q ss_pred EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccc
Q 015301 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 202 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 281 (409)
+++.|.++++||+. .+..+..+. ....+.+++.+|-++.++.|+.+|.|.+.++..........
T Consensus 193 TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v----------- 256 (476)
T KOG0646|consen 193 TASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV----------- 256 (476)
T ss_pred EecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc-----------
Confidence 99999999999974 565555554 56789999999999999999999999999887643211100
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
.....+..+..+..+.+|... ..+.+++++-||.+|++|+.||.|.|||+.+.++++++....++|+.+
T Consensus 257 -------~~k~~~~~~t~~~~~~Gh~~~----~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 257 -------NQKGRHEENTQINVLVGHENE----SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL 325 (476)
T ss_pred -------cccccccccceeeeeccccCC----cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Confidence 011222345667778888754 244566788899999999999999999999999999998778899999
Q ss_pred EEecCcCeEEe-ecCCCeEEEEec
Q 015301 362 CWHPIYPMLIS-SSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s-~~~dg~i~iw~~ 384 (409)
.+.|-.+-.+. -+..-.+-.|++
T Consensus 326 ~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 326 QINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred EeeccccceecccccCccCCchHh
Confidence 99765442222 223334444444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=187.67 Aligned_cols=275 Identities=17% Similarity=0.217 Sum_probs=206.1
Q ss_pred eeEEecCc-eeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 6 EVNYSGRG-RFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 6 ~~~~s~dg-~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
|++-.|.. ..+++++ ...+|.+....+..++..|.+.|..++++. ..+++++.|.+|+.|.++.. ...... .
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~til-g 146 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL-G 146 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeee-c
Confidence 44445544 2234433 445677666677889999999999999987 66889999999999998864 222221 1
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 160 (409)
...+..+.-+..+..+++++. .|.|||.............. ..|.++.|+|.. ..|+++
T Consensus 147 ---~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~---------------Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 147 ---KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA---------------DSISSVKFNPVETSILASC 206 (433)
T ss_pred ---cccccccccccccccccccCc--eeeecccccCCccceeecCC---------------CceeEEecCCCcchheeee
Confidence 225666776666777888764 58999997665433332211 148999999954 456777
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|.+||++++.++..+. -...-+.++|+| +...++++++|..++.||+|. -..++....+|.+.|.+++|+
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccC
Confidence 799999999999999888764 345568899994 888899999999999999983 466778889999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
|.|+.+++|+.|.+|+||..+...... .+.. .-...++++.
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRd----------------------------------iYht-----kRMq~V~~Vk 322 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRD----------------------------------IYHT-----KRMQHVFCVK 322 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchh----------------------------------hhhH-----hhhheeeEEE
Confidence 999999999999999999988733211 1110 1113456778
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
||-|.+++++|+.|+.|++|.....+.+
T Consensus 323 ~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 323 YSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EeccccEEEecCCCcceeeeecchhhhc
Confidence 9999999999999999999987655443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=179.22 Aligned_cols=237 Identities=15% Similarity=0.250 Sum_probs=185.4
Q ss_pred cccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEE
Q 015301 83 ALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAA 160 (409)
Q Consensus 83 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 160 (409)
.|.+.|+++...+ .|+++++|+.||.|.+||++.............+....-.+...+|...|.++.|-| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3556899999887 689999999999999999987653333333223333334556678999999999999 66678888
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
+.|.++++||..+-+....++ ..+.|.+-+++| ....++++|..+-.|++.|+. .+.....+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEEE
Confidence 899999999999888777665 456777777774 234678889999999999964 8999999999999999999
Q ss_pred EcCCCCe-EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|+|...+ |++|+.||.|++||++..
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRra------------------------------------------------------ 221 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRA------------------------------------------------------ 221 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecc------------------------------------------------------
Confidence 9998775 678899999999999861
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCce---EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
.|..++.|..+++. +++-..|.+.|..++|+.++.++++++.|..+++|+..+++....+.
T Consensus 222 ----------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 222 ----------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred ----------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 12233444443322 22345799999999999999999999999999999999887654443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=195.25 Aligned_cols=250 Identities=19% Similarity=0.299 Sum_probs=201.7
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|..-|.++++|...+.+.+|+ .|.|+|||+.......-....+.. ....-|.++...|||+.|++|+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl----------~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL----------NRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc----------CcccceeeeEecCCCceEEeccc
Confidence 4566788999999999999888 588999999765332221111111 11235899999999999999999
Q ss_pred cCeEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 DNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
-.++.|||+....+.. .+....-...+++.+ ++.++.+++..||.|.|||++ +...+..+.+|.+.+.||..+
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEEec
Confidence 9999999998765443 333333456778888 899999999999999999986 788899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
+||..|.+|+-|.+|+.||++.....+. |. ...-+|++.
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hd----F~SQIfSLg 599 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HD----FSSQIFSLG 599 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hh----hhhhheecc
Confidence 9999999999999999999998433222 21 113457888
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
++|++.+|++|-+++.+.|.... +.....+.-|.+-|.++.|.+.|+++++.+.|+.+..|..+-+...
T Consensus 600 ~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 600 YCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred cCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 99999999999999999998864 4445667779999999999999999999999999999999877654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=184.46 Aligned_cols=285 Identities=14% Similarity=0.261 Sum_probs=220.1
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCC-----ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-----WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-----~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
.++++.|.|....+..++.....+++..... +.+.--..+|.+..|.|+|. .+++++....++.||+.+.+ +.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~ 293 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VT 293 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-cc
Confidence 4789999999887777666544444333222 22333468999999999999 89999999999999998873 33
Q ss_pred eeeecccc-cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 77 KDIETKAL-RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 77 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
+.....++ ...+.....+|++++|+..+..|.|.+....+++.....++.. .|..++|+.+++
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG----------------~v~~~~fsSdsk 357 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG----------------VVSDFTFSSDSK 357 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc----------------EEeeEEEecCCc
Confidence 33333333 2357778899999999999999999999998888765555443 589999999999
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCceeeeeeccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRANGVLMGHL 231 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~ 231 (409)
.|++.+.+|.|++||+++..++..+.. .+. -++++.+ .++.+||+|+..|.|-|||.... ....+++..+..-.
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 999999999999999999988888753 222 3567777 88999999999999999996522 22345666666677
Q ss_pred cceeEEEEcCCCCeEEEEeC--CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 232 EGITFIDSRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
..|+++.|+++.++|+.++. +..+++-.+.+ ..+|..-+..
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-------------------------------------~TVFsNfP~~ 478 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPS-------------------------------------CTVFSNFPTS 478 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccc-------------------------------------eeeeccCCCC
Confidence 88999999999999887775 56788887765 3344444444
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+..+.+++|||.+.+||.|..+|+|.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5555677888999999999999999999999874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-26 Score=189.08 Aligned_cols=283 Identities=17% Similarity=0.269 Sum_probs=223.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
-..+|.++||+.+.+.||.+-.||.|-+|++..+......+.. +.+..|.+++|+ ++..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3478999999999999999999999999999998777666655 456689999999 55678889999999999999887
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~ 196 (409)
........ .+.|++++.+|.+..+++|+.||.+..++...++.... +...++.|.+++|+ ++
T Consensus 102 ~~~~~d~~---------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~ 165 (691)
T KOG2048|consen 102 QKYNIDSN---------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PT 165 (691)
T ss_pred eeEEecCC---------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-CC
Confidence 65443322 33699999999999999999999888888887766543 34457899999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeee-------ec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------MG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+..+++|+.||.|++||.. .+..+... .. ...-|+++.|-.+ ..|++|...|+|.+||...
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~------ 234 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF------ 234 (691)
T ss_pred ccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC------
Confidence 9999999999999999975 44433311 11 2334677777754 4699999999999999887
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ- 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~- 347 (409)
+..++.+..|. .-+.+++.++++..+++++.|+.|.-|...+.+.
T Consensus 235 ----------------------------gTLiqS~~~h~------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 235 ----------------------------GTLIQSHSCHD------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred ----------------------------cchhhhhhhhh------cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 44555566665 3455667788899999999999999998876643
Q ss_pred ---EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 348 ---VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 348 ---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 2233568888999998876 899999999998866544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=209.15 Aligned_cols=255 Identities=24% Similarity=0.331 Sum_probs=216.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
.+++....+-.+++|+... ...|...+.++..-..++.+++|+.|..+.+|.+........
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------- 65 (825)
T ss_pred cccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence 3444555556677887653 233555677777766788999999999999998866544322
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|+ |-+.+.+.|+.|+.+++|
T Consensus 66 -----~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 66 -----LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKIW 139 (825)
T ss_pred -----eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccceeh
Confidence 13677799999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
|.| ...+...+.+|...+..+.|+|+|++++.++.|..+++||+..
T Consensus 140 D~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a------------------------------ 185 (825)
T KOG0267|consen 140 DIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA------------------------------ 185 (825)
T ss_pred hhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc------------------------------
Confidence 976 7788888999999999999999999999999999999999987
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEe
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS 372 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 372 (409)
++.+..|+.|. ..+.++.|+|..-+++.|+.|++|++||+++.+.+.........|.++.|+|+++.+++
T Consensus 186 ----gk~~~ef~~~e------~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 186 ----GKLSKEFKSHE------GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred ----ccccccccccc------ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence 55666777776 33345568888889999999999999999999999998888899999999999998888
Q ss_pred ecCC
Q 015301 373 SSWD 376 (409)
Q Consensus 373 ~~~d 376 (409)
|..+
T Consensus 256 G~q~ 259 (825)
T KOG0267|consen 256 GEQI 259 (825)
T ss_pred Cchh
Confidence 8654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=188.60 Aligned_cols=217 Identities=14% Similarity=0.197 Sum_probs=176.2
Q ss_pred CceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee----eeeeeecccccceEEEEEeCCC-CcEEEEEecC
Q 015301 33 PWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPD-QRFLVYASIC 106 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d 106 (409)
..+|.||...=+.+.|++.. -.|++++.|++|++||+..... +.......+|...|..++|++- ...+++++.|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 34899999988999999854 3688999999999999976533 4445567789999999999994 5677888999
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-eeeeEEcCCC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHK 184 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~ 184 (409)
+.+.|||++++ ...... ....|..+|+|++|+| ++..||+|+.|++|.+||+++. +++.++.+|.
T Consensus 250 ~~L~iwD~R~~-~~~~~~------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 250 GKLMIWDTRSN-TSKPSH------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE 316 (422)
T ss_pred CeEEEEEcCCC-CCCCcc------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence 99999999974 211111 1235677899999999 6778899999999999999875 4567889999
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC----------CceeeeeeccccceeEEEEcCCCC-eEEEEeCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK----------GRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQ 253 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 253 (409)
..|.++.|+|.....|++++.|+.+.+||+...... ...+....+|...|..+.|+|+.. .|++.+.|+
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999998632211 233456678999999999999766 577888999
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
.+.||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=178.56 Aligned_cols=255 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
..+.+|...|..++-......+.+++.|.+.++|.++++.+...+. +|.+.|++++|++.+.+++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~---------------GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT---------------GHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------------ccccceeeEEeccccceEE
Confidence 3467788899999988777899999999999999999998754432 6777899999999999999
Q ss_pred EEEecCeEEEEEC------CC----------------------------------CeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 159 AAGSDNFIYVYDL------QA----------------------------------NKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 159 ~~~~d~~i~v~d~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
+++.|++..||.. .+ ..++..+.+|.+.|.+..|. ..+.
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcc
Confidence 9999999999962 11 01345677899999999999 8999
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
.+++++.|.+..+||+ +++..+..+.+|....+.++-+|..+++++++.|.+.++||++..
T Consensus 286 Q~vTaSWDRTAnlwDV----Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--------------- 346 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDV----ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--------------- 346 (481)
T ss_pred eeeeeeccccceeeee----ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------------
Confidence 9999999999999996 489999999999999999999999999999999999999999851
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcc
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAP 357 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~ 357 (409)
-..+..|.+|... + .+..|.. +..+++|+.|.+|++||+++. .++.+++ ..++
T Consensus 347 ------------------I~sV~VFQGHtdt--V----TS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~ 400 (481)
T KOG0300|consen 347 ------------------IQSVAVFQGHTDT--V----TSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSP 400 (481)
T ss_pred ------------------cceeeeecccccc--e----eEEEEec-CCceeecCCCceEEEeeeccccCcceeee-cCCc
Confidence 2457788999843 2 3333443 456899999999999999886 4677777 5778
Q ss_pred eeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCCc
Q 015301 358 VRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 358 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
++.++.+..++.++.--.+..|++||+.....+..|.
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 9999999888899988888999999999888777764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=195.93 Aligned_cols=242 Identities=21% Similarity=0.275 Sum_probs=198.1
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE-EEEcC-CCCeE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS-VKFST-DGQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l 157 (409)
...+|...|..++..+. ..+++++.||++++|+-..++......... |.+-|.. +++.+ ++-.+
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-------------~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEG-------------PKGFIANSICYAESDKGRL 74 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceeccc-------------CcceeeccceeccccCcce
Confidence 45678888888887654 478999999999999987766543222221 1222333 66665 45569
Q ss_pred EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
++|+.|+.|.+|...+..+...+.+|...|.++... .++. +++|+.|.++++|. .+++...+.+|+..|+++
T Consensus 75 ~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~------~~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWR------IGELVYSLQGHTASVWAV 146 (745)
T ss_pred EeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEec------chhhhcccCCcchheeee
Confidence 999999999999999999999999999999999987 5555 99999999999999 567777799999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
..-|++ .+++|+.|.+|++|.- +..+++|.+|... +.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~------------------------------------~~~l~tf~gHtD~------VR 183 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKG------------------------------------GTLLKTFSGHTDC------VR 183 (745)
T ss_pred eecCCC-cEEeccCcceeeeccC------------------------------------Cchhhhhccchhh------ee
Confidence 999887 7999999999999985 3567889998843 33
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+++-+ +..+++++.||.|++|++ +++.+.++.+|...|.+++..+++..++++++|++++||+.....
T Consensus 184 gL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~ 252 (745)
T KOG0301|consen 184 GLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV 252 (745)
T ss_pred eeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE
Confidence 334433 456889999999999999 899999999999999999988888999999999999999987433
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=193.35 Aligned_cols=327 Identities=18% Similarity=0.183 Sum_probs=229.6
Q ss_pred eEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 43 VYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 43 v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
|+++. +|.- +.++.|+.+|.+++|++.++..+..... +...|+++.-+|--..+|.|..+|+|.+++++.++..
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~---~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE---FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecc---cccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 66654 4432 4578899999999999999977766444 4458999999999899999999999999999988875
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 198 (409)
...+.. .++|++++|..||+.+ ++|+..|.+.+||++..+....+. .|.+.|....|. +...
T Consensus 238 ~sFk~d---------------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl-~~ep 301 (910)
T KOG1539|consen 238 MSFKQD---------------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL-PGEP 301 (910)
T ss_pred EEEEcc---------------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec-CCCc
Confidence 554432 1369999999998765 556667999999999888777665 798999999999 8888
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc-CCCCeEEEEeCCCcEEEeeCCCCcccccccc------
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNS------ 271 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 271 (409)
.+++.+.|..+++|=..........++.-.+|..+..++.|. .+|..+.+++.|++++.+++......+....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 999999999999886654344456777778999999999987 6788999999999999888754221111100
Q ss_pred ---------------c--------cccccc----------------ccccccc------cc-------cceecc------
Q 015301 272 ---------------R--------LRDYDW----------------DYRWMEY------PS-------YARRLK------ 293 (409)
Q Consensus 272 ---------------~--------~~~~~~----------------~~~~~~~------~~-------~~~~~~------ 293 (409)
+ .+...| +.+.-.. +. ....+.
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0 000011 1110000 00 000000
Q ss_pred ----ccCccceeeeecccce--------eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--------------
Q 015301 294 ----HPHDQSLATYKGHSVL--------RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-------------- 347 (409)
Q Consensus 294 ----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-------------- 347 (409)
......+..+...... ......+..++.+.-++.+++++.+|.+.+||.....+
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 0001111111111000 01112344555666678899999999999999865542
Q ss_pred ---------------------------EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 348 ---------------------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 348 ---------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+..+.+|...|++++|||||++|++++.|++|++||+.++..
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 223456999999999999999999999999999999998754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=200.40 Aligned_cols=248 Identities=20% Similarity=0.337 Sum_probs=193.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 165 (409)
...+|...++-..++.++ ...+.+|.+..........+... ........+..+.|.. +.++|++++..|.
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k--------~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFK--------TKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecc--------cccceeeehhhcccccchhhhheeecCCCc
Confidence 466777888888888777 35677887765543322222110 0011122467788876 5678999999999
Q ss_pred EEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-
Q 015301 166 IYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR- 241 (409)
Q Consensus 166 i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 241 (409)
|.+||+.. .+.+..+..|...++++.|++...++|++|+.||.|++||+| .......+.+..+.|..+.|+|
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeeccC
Confidence 99999987 556667889999999999998899999999999999999988 5666667777888999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
.+.+|+++...|.+++||+|.. .+....+..|. +.++++.|
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp---------------------------------~r~~~k~~AH~------GpV~c~nw 228 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQP---------------------------------DRCEKKLTAHN------GPVLCLNW 228 (839)
T ss_pred CCceEEEecCCceEEEeeccCc---------------------------------hhHHHHhhccc------CceEEEee
Confidence 4678999999999999999984 34555666776 55667789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCce--EEEeccCCcceeeeEEecCcC-eEEeec--CCCeEEEEecCCC
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQ--VAKLDFHNAPVRDCCWHPIYP-MLISSS--WDCNIVRWEIPGI 387 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~iw~~~~~ 387 (409)
+|++.+||+|+.|+.|+|||+.+.+. +.++. ...+|..+.|-|+.+ .|++++ .|-.|+|||+...
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999999999999999986643 44443 356899999999988 667665 5889999999754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=175.32 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=199.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
..+|++...|.|++||..++..+... .++...++.++|.. ....+.+|+.||+|++||++..............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 56888889999999999997555553 34444677888866 4677889999999999999987654443332211
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe----cCeEEEEECCCCee-eeEE-cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQANKC-SLRI-PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
..+..+++.+.+++.+++|+. +..|.+||++..+. +..+ ..|...|+++.|+|.+.++|++|+
T Consensus 117 -----------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 117 -----------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred -----------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 125677777777888888765 67899999988766 4443 679999999999999999999999
Q ss_pred CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
.||.|.+||+....+.. .+.....|...|..+.|..++ +.|.+-+......+|+++...+......+.......
T Consensus 186 vDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~---- 260 (376)
T KOG1188|consen 186 VDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL---- 260 (376)
T ss_pred ccceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH----
Confidence 99999999987543222 333344577889999998776 458888888999999999866443332211100000
Q ss_pred cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEcc---C---CceEEEecc-CC
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLV---S---GAQVAKLDF-HN 355 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~---~---~~~~~~~~~-~~ 355 (409)
.....+-..+..|. ..++...+.++. -+...++-+. + .+.+..+++ |.
T Consensus 261 ----------r~~~~~dY~I~~~~--------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ 316 (376)
T KOG1188|consen 261 ----------RKEDNCDYVINEHS--------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE 316 (376)
T ss_pred ----------Hhhhhhhheeeccc--------------CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence 00000001111110 113344444444 4555555443 2 345566666 67
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.-|.++.|...+.++.|||+||.+.+|..+.
T Consensus 317 eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 317 EIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred HHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 7889999988888999999999999999644
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-24 Score=179.17 Aligned_cols=263 Identities=16% Similarity=0.146 Sum_probs=183.1
Q ss_pred ceeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~ 111 (409)
..+.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++...... . +. .+..++|+|+++.++++ ..++.+++
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~--~~-~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-S--GP-DPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-C--CC-CccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3455444 46789999999976 566788999999998875543322 1 11 35678999999987655 56899999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-eEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-FIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
||+.+.+....... ...+.+++|+|++++++++..++ .+.+||..+++....+.. ...+..+
T Consensus 100 ~d~~~~~~~~~~~~----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~ 162 (300)
T TIGR03866 100 IDIETRKVLAEIPV----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFA 162 (300)
T ss_pred EECCCCeEEeEeeC----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEE
Confidence 99987543221110 11367899999999999888764 567789988877655542 3345789
Q ss_pred EEeCCCCcEEE-EeeCCCeEEEecccccccCCceeeeeeccc-----c--ceeEEEEcCCCCeEEE-EeCCCcEEEeeCC
Q 015301 191 CFADETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHL-----E--GITFIDSRRDGRYFIS-NGKDQTTKLWDIR 261 (409)
Q Consensus 191 ~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 261 (409)
+|+ +++.+|+ ++..++.|++||++ .++....+..+. . ....++|+|+++++++ .+.++.+.+||++
T Consensus 163 ~~s-~dg~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 163 EFT-ADGKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred EEC-CCCCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 999 7787775 44569999999975 444444332211 1 2346889999998654 4556789999987
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~ 340 (409)
+.+ .+...... ..++.++|+|+|++|+++. .+|.|.+|
T Consensus 238 ~~~----------------------------------~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 238 TYE----------------------------------VLDYLLVG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred CCc----------------------------------EEEEEEeC-------CCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 622 11111111 1244668999999998864 58999999
Q ss_pred EccCCceEEEeccCCcceeeeEEec
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
|+.+++.+..++.. ...+.++++|
T Consensus 277 d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 277 DVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999754 5558888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=170.78 Aligned_cols=308 Identities=17% Similarity=0.250 Sum_probs=215.5
Q ss_pred eeecCCCCeEEEEECC-----CCCEEEEEeCCCcEEEEEcCCCe--eeeeeeecccccceEEEEEeCCC----CcEEEEE
Q 015301 35 KVDGMNSRVYTSQFSN-----DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPD----QRFLVYA 103 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-----~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~ 103 (409)
...+|+.+|..++|++ .-..+||++.+ .+.+|+..... .+.+......+...-..++|+-+ ..+||++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457899999999985 23467777654 68899877654 33333333445667778888653 4689999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE--
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI-- 180 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-- 180 (409)
+.-|.|+|.|+.+++..... .+|...|+.+.+.|+ .+++++++.|..|++|++++..++..+
T Consensus 112 G~~GvIrVid~~~~~~~~~~---------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNY---------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred cceeEEEEEecchhhhccce---------------eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 99999999999887653332 256678999999995 478899999999999999999998876
Q ss_pred -cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc--ccCCce----------------------eeeeecccccee
Q 015301 181 -PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF--ISKGRA----------------------NGVLMGHLEGIT 235 (409)
Q Consensus 181 -~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~----------------------~~~~~~~~~~v~ 235 (409)
.+|.+.|.++.|+ .++.+|++++.|.++++|++... ...-+. ..+-.-|...|.
T Consensus 177 ~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred cccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 6799999999999 89999999999999999998611 000000 001223666666
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
|+.|- |+++++-+-++.|..|.....+.......+.. .....+..+.-... ...
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e--------------------s~~Ti~~~~~~~~c----~iW 309 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE--------------------SATTILGEFDYPMC----DIW 309 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCc--------------------cceeeeeEeccCcc----ceE
Confidence 77765 67899988899999998743221111000000 00011122221111 111
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCceE--EEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--AKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
...-+|.|-++.||.|...|.|++||++..++. .++.. ....|...+|+.|+..|+..+.|+.|.-||.-
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 122345667899999999999999999887663 22221 24579999999999999999999999999853
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=201.18 Aligned_cols=201 Identities=27% Similarity=0.483 Sum_probs=181.1
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+ ....+|++|+.+|+|++||+. ..
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----eA 102 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----EA 102 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----hh
Confidence 3357777776678889999999999999998888888899999999999999 888999999999999999964 88
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.+|...+.++.|+|-+.+.+.++.|+.+++||++. ..+..
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~~ 148 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCSH 148 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCcee
Confidence 88899999999999999999999999999999999999997 35667
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
.+.+|. ..+-.+.|+|+|++++.|++|..++|||...|+.+..|+.|.+.+..+.|+|..-++++||.|+++++
T Consensus 149 ~~~s~~------~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 149 TYKSHT------RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred eecCCc------ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee
Confidence 777766 33445589999999999999999999999999999999999999999999999889999999999999
Q ss_pred EecCCC
Q 015301 382 WEIPGI 387 (409)
Q Consensus 382 w~~~~~ 387 (409)
||+++-
T Consensus 223 ~dletf 228 (825)
T KOG0267|consen 223 WDLETF 228 (825)
T ss_pred ecccee
Confidence 999853
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=175.63 Aligned_cols=299 Identities=15% Similarity=0.150 Sum_probs=204.3
Q ss_pred EEEEECCCCCEEEEEeCC---Cc--EEEEEcCCCeeee--eeeecccccceEEEEEeCC-------CCcEEEEEecCCEE
Q 015301 44 YTSQFSNDGSFFVAASQE---SN--IKVYNVDKNWKIQ--KDIETKALRWTITDTSLSP-------DQRFLVYASICAIV 109 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d---~~--i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i 109 (409)
-.+..-|+.++++++-.+ .. ++||+-... .+. .-+.. .....|++|.. -|+++|+|+.|..|
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nlYvHHD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NLYVHHDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ceeEecceec---cCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 355667777777776433 23 455554331 111 11111 12456777743 26899999999999
Q ss_pred EEEEcCCCccc-cccceeceeee-----eeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 110 NIVDVGSSARE-SLANVTEIHKG-----LDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 110 ~~w~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.|||+.-.... +...+...... -.-.....+|+..|.+++|+.. .+.|++|+.|.+|.+||+.++++..++..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 99998643211 11111100000 0011112368888999999874 45788999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 261 (409)
|.+.|.++.|+|..+.+|++|+.|++|.+.|.|.. ..........+.|..++|.|.. ..++++..||+|+-+|+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCc----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999999999999999999999999999842 2222222345789999999864 467778889999999999
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~ 340 (409)
+. ++++.+++.|......+ ++++ ...++++++.|+.|++|
T Consensus 361 ~~---------------------------------~~~vwt~~AHd~~ISgl------~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 361 NP---------------------------------GKPVWTLKAHDDEISGL------SVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred CC---------------------------------CCceeEEEeccCCcceE------EecCCCCcceeeccccceEEEE
Confidence 84 36677888887543332 2222 34689999999999999
Q ss_pred EccCCceEEEe--ccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCcc
Q 015301 341 DLVSGAQVAKL--DFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 341 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++....+.... ...-+...|.++.|+-. .|+.|+..+.+++||+.....
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 98755442211 11123456667777766 778888888999999987543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=164.20 Aligned_cols=285 Identities=13% Similarity=0.196 Sum_probs=203.8
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..|+.||+-|.++|.+. ..+++++........+.+|..+|++++||+||+.|+|+|.|..|.+||+..+..+++. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 46899999999999854 4577888888888899999999999999999999999999999999999998655543 3
Q ss_pred cccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
+. ++|..+.|+|.....+ +.-.+..-.+-++..+....+..-.+.. ......+..|.+.|+++++
T Consensus 105 f~---spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d-----------ln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 105 FD---SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD-----------LNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred cc---CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc-----------cccccccccccCCCCEEEE
Confidence 33 3899999999644333 3334444556666543322222111111 0112233468899999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------c
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------L 231 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~ 231 (409)
|...|.+.++|..+.+++..++-.. ..|..+.++ ..+.+|+.-+.|..|+.|+++.....++.......| .
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999999999998886555 788999998 899999999999999999987433332222211111 1
Q ss_pred cceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
.+=.+++|+.+|.+++.++. ...++||.-.. +..++.+.|....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~----------------------------------GsLVKILhG~kgE- 294 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSI----------------------------------GSLVKILHGTKGE- 294 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCC----------------------------------cceeeeecCCchh-
Confidence 23357889999999887764 45799999776 4555555554421
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
....+.|.|-...+++- ..|.|+||....
T Consensus 295 ----~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ----ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ----heeecccccceeeeeec-cCCceEEEEeec
Confidence 11233455555566665 778999998754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=204.31 Aligned_cols=292 Identities=17% Similarity=0.283 Sum_probs=213.4
Q ss_pred EEEECCCCC-EEEEE----------eCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcE----EEEEecCC
Q 015301 45 TSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRF----LVYASICA 107 (409)
Q Consensus 45 ~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg 107 (409)
.++|+|++. ++|+| +.+.++-||.++..... .+..........-+.++|.+.+.. ||.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 467888776 44543 23456666665432111 111112223346889999987765 88888999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE--cCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI--PAHK 184 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~ 184 (409)
.|.+||...-..... .........|.+.|..+.|++. +++|++|+.||.|.|||+.+.+..... ....
T Consensus 91 ~I~ly~p~~~~~~~~---------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 91 NIVLYDPASIIANAS---------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred ceEEecchhhccCcc---------hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 999999876311000 0111122357779999999995 459999999999999999876544433 2245
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--ceeEEEEcCCCC-eEEEEeCCC---cEEEe
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE--GITFIDSRRDGR-YFISNGKDQ---TTKLW 258 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~~dg---~i~iw 258 (409)
+.|.+++|+.....+|++++.+|.+.|||+| ..+.+..+..+.. .+..+.|+|+.. .+++++.|. .|.+|
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence 7899999997778899999999999999998 4455555544443 477899999864 566666544 69999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSV 337 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v 337 (409)
|+|.. ..+++.+.+|. +.+.++.|++.+ .+|++++.|++|
T Consensus 238 DlR~a---------------------------------ssP~k~~~~H~------~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 238 DLRFA---------------------------------SSPLKILEGHQ------RGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccc---------------------------------CCchhhhcccc------cceeeeccCCCCchhhhcccCCCCe
Confidence 99873 34567777887 334455666544 899999999999
Q ss_pred EEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCc
Q 015301 338 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+|+.++++.+..+......+..+.|+|... .++.++.||.|-|+.+.+..
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998888999999999887 88888999999999998765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=171.23 Aligned_cols=214 Identities=17% Similarity=0.247 Sum_probs=167.5
Q ss_pred eeecCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCC-------------eeeeeeeecccccceEEEEEeCCC-Cc
Q 015301 35 KVDGMNSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKN-------------WKIQKDIETKALRWTITDTSLSPD-QR 98 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~ 98 (409)
..-+|.+.|+.+.-++-+ .+.|+=+..|.|+||++... .....+....+|...=++++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 455788888888887765 45566678899999997532 122334556677778899999994 33
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCee-
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKC- 176 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~- 176 (409)
.|++|..-+.|++|...++.-..-.... .+|...|-.++|||. ...|++|+.||+|+|||++.+..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf------------~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPF------------TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccc------------cccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 5888888899999999886543222211 246668999999994 45788999999999999998732
Q ss_pred -eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCc
Q 015301 177 -SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQT 254 (409)
Q Consensus 177 -~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 254 (409)
....+.|.+.|+.+.|+ ....+|++|+.||+++|||+|.+. .+.++..+.-|..+|+++.|+|. ...|++++.|..
T Consensus 294 ~~~~~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 294 AAVSTKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred ceeEeeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 22337899999999999 666699999999999999999754 44788899999999999999995 457888899999
Q ss_pred EEEeeCCC
Q 015301 255 TKLWDIRK 262 (409)
Q Consensus 255 i~iwd~~~ 262 (409)
|.+||+.-
T Consensus 372 itiWDlsv 379 (440)
T KOG0302|consen 372 ITIWDLSV 379 (440)
T ss_pred EEEEEeec
Confidence 99999865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=170.43 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=207.5
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe------eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 40 NSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNW------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+|..+.|.+++. .||||+.|..|++|.++.+. .+.-...+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998877 99999999999999986542 334445567788899999999999999999999999999
Q ss_pred EcCCCccccccc-eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLAN-VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
....-....... ...............+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 876311100000 0000001112222235777899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-------------------ecccc----ceeEEEEcCCCCeEEE
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------------------MGHLE----GITFIDSRRDGRYFIS 248 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~----~v~~~~~~~~~~~l~~ 248 (409)
|. |-+.++++-+.|...+.+.+. ........ .-|.+ -...++|+|+|.++++
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~----~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAK----LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeee----eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 99 788899998888876666643 11111000 00111 2345788999998887
Q ss_pred EeC----CCcE-----EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 249 NGK----DQTT-----KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 249 ~~~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
... .+.+ ++|+-.....+........... +..........+..... . ...+.
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~--------------lavr~~pVy~elrp~~~--~--~~~~~- 308 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPA--------------LAVRFSPVYYELRPLSS--E--KFLFV- 308 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcce--------------EEEEeeeeEEEeccccc--c--ccccc-
Confidence 542 2222 2222211110000000000000 00000000000000000 0 00111
Q ss_pred eecCCCCEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
-|-+..+|+++.+ .|+|||.++.+++.... -|-..|++++|++||.+|+..|.||...+-.++..
T Consensus 309 --lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 309 --LPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred --cccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1334456666554 69999999988877664 58899999999999999999999998877666543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=176.61 Aligned_cols=251 Identities=14% Similarity=0.194 Sum_probs=185.0
Q ss_pred CeEEEEECC-------CCCEEEEEeCCCcEEEEEcCCCeeeee------------------eeecccccceEEEEEeCCC
Q 015301 42 RVYTSQFSN-------DGSFFVAASQESNIKVYNVDKNWKIQK------------------DIETKALRWTITDTSLSPD 96 (409)
Q Consensus 42 ~v~~~~~s~-------~~~~l~t~~~d~~i~vw~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~~ 96 (409)
.-.|++|-. .|+++|.|+.|..|.|||++-...+.. .....+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345777633 367999999999999999863322111 1123367778888999875
Q ss_pred -CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC
Q 015301 97 -QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 97 -~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.+.||+|+.|.+|.+||+.++++..... .|...|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSIT---------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehh---------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 5689999999999999999998765544 2344799999999 5678999999999999999853
Q ss_pred eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCC
Q 015301 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQ 253 (409)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 253 (409)
......-...+.|..++|.|...+.++++..||+|+-+|+| ..++++..+..|.++|.++++++. ..++++++.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 32222222467899999998888999999999999999998 355899999999999999999874 45788999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~ 332 (409)
.|++|++...... ....|...... ..+.++.|+ .-+++.|+
T Consensus 397 ~Vklw~~~~~~~~-----------------------------------~v~~~~~~~~r---l~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 397 VVKLWKFDVDSPK-----------------------------------SVKEHSFKLGR---LHCFALDPDVAFTLAFGG 438 (463)
T ss_pred eEEEEeecCCCCc-----------------------------------ccccccccccc---eeecccCCCcceEEEecC
Confidence 9999998763221 11111111111 122233333 24678888
Q ss_pred CCCeEEEEEccCCceE
Q 015301 333 SDNSVYIYDLVSGAQV 348 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~ 348 (409)
..+.++|||+.+...+
T Consensus 439 ~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 439 EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEeecccChhH
Confidence 8889999999876543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=170.16 Aligned_cols=304 Identities=16% Similarity=0.152 Sum_probs=217.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--ee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--KI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
-+.+|.+.|+++.||.++++||+|+.|..+++|+++.-. .. ..-.....|...|.|++|...+++|.+|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 567999999999999999999999999999999986431 11 11122345667899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eee--EEcCCCCCe
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSL--RIPAHKSDV 187 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~--~~~~~~~~v 187 (409)
.-|+++.+......... ..+.|+.+..+|..+.|++.+.++.|.+||.+... ... .........
T Consensus 131 ~HDiEt~qsi~V~~~~~-------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENN-------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeecccceeeeeecccC-------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 99999887654443322 23369999999999999999999999999997654 221 122234567
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee---eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV---LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
..+.|+|....+|++.+..+-+-+||.|.....--.... +......-.++.|+|+|..|++.-....-.+||+-+..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 788999888999999999999999998832111111111 11111223567899999999988777777788876632
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
+. +..+...+......+.+-+.+|-.| .-+++|+.+-.|++|.+..
T Consensus 278 ~~---------------------------------V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 278 CF---------------------------------VLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ce---------------------------------eEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 21 1111111111111222333444443 3499999999999998742
Q ss_pred C-----------------------ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 345 G-----------------------AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 345 ~-----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
. +.+..+++|..-++.+.|+|...+|++.+-.+.+++|.--
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1 1245678999999999999999999999999999999653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=180.98 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=101.7
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCee--e-eeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWK--I-QKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-. + .......+..-.|.++.|+|...-|+..+..|.++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 6789999999999999 456789999999999999985421 1 11222333445789999999766666667789999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH 183 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~ 183 (409)
+||+.+++..... .+|..-|.++.|+.||.+|++++.|..|+|||.+. +++++..++|
T Consensus 154 i~D~stqk~~~el---------------~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 154 ITDISTQKTAVEL---------------SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEcccCceeecc---------------cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 9999987653222 24555799999999999999999999999999863 4444444444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=174.86 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=203.9
Q ss_pred eEEEEeeecCCCceeecCC--CCeEEEEECCCCCEEEE--EeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCC
Q 015301 22 HVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDGSFFVA--ASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPD 96 (409)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~~~l~t--~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~ 96 (409)
..++++......-.+..|+ ..|.++.|+.... |++ .+.|..+++|.-..... +.......+. .-.|++....
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~ 90 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQ 90 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhc
Confidence 3444444433333333333 3488999987664 444 45678899998654411 1111111111 2334444444
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
..++++|+..+.|+|||++...+.... .+|...|+++.++....+|++++..|.|.|..+.++..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~l---------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFL---------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhc---------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 589999999999999999854432222 25666899999999999999999999999999999887
Q ss_pred eeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCc
Q 015301 177 SLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQT 254 (409)
Q Consensus 177 ~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 254 (409)
...+... ...|.-+.|+|....+|.+++.+|.|.+||+. ...........|..+...++|+|. ..+|++.+.|..
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~---g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ---GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc---CCCcccchhhhccCCcCcceecCCccceEEEecccce
Confidence 7777544 34556899997777788899999999999974 233344556779999999999995 457888999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|.+||++... ....+.. ......++|+++|.+|++|+..
T Consensus 233 i~~yD~~s~~----------------------------------s~~~l~y-------~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 233 INIYDIRSQA----------------------------------STDRLTY-------SHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred EEEeeccccc----------------------------------ccceeee-------cCCcceeeecCCceEEEeecCC
Confidence 9999998622 1111111 1223466899999999999999
Q ss_pred CeEEEEEccCC-ceEEEeccCCcceeeeEEecCc
Q 015301 335 NSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIY 367 (409)
Q Consensus 335 g~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~ 367 (409)
|.|..||++.. .++..+..|...|++++|-|.-
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999864 6789999999999999998753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=165.22 Aligned_cols=299 Identities=15% Similarity=0.151 Sum_probs=202.7
Q ss_pred eecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 28 LPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 28 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.|+.+.+.|.+|.+.|+++.|-.+++ |.+|..-|.|.+|++.+......... .+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCCc
Confidence 35667789999999999999998776 88999999999999988744433221 24457888888887 5688889999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-----CCC----eEEEEEec-CeEEEEECCCCeee
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-----DGQ----ELVAAGSD-NFIYVYDLQANKCS 177 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~d-~~i~v~d~~~~~~~ 177 (409)
.+.+|++..........+ .++++.|.+ +++ .++.-+.. ..+.+-|......+
T Consensus 78 ~L~lw~ia~s~~i~i~Si------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred eEEEEEccCcceEEEeee------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCcccee
Confidence 999999987554332221 244444433 111 11111110 01222232222222
Q ss_pred eEE----cCCCCCeEEEEEeCCCC--cEEEEeeCCCeEEEeccccc------ccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 178 LRI----PAHKSDVNTVCFADETG--HLIFSGSDDSLCKVWDRRCF------ISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 178 ~~~----~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
... .+..+.+.+..+....+ -++++|.++|.+.+||+... ....+.......|..+|.++.+.+.-..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 211 12345677766542333 35678889999999997521 0111344455679999999999886666
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
=++++.+..+..|++.......+. .....++. ..+....+-||+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lkn--------pGv~gvrIRpD~ 263 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKN--------PGVSGVRIRPDG 263 (323)
T ss_pred CcCCCccccceeeeeccccCcccc----------------------------cceEEecC--------CCccceEEccCC
Confidence 677888888999998752111100 00011110 112233567899
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+.+|+++-|++|+||+.++.+++..++-|...|++++|+|+...+|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=160.30 Aligned_cols=279 Identities=16% Similarity=0.174 Sum_probs=192.0
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecC--------CCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGM--------NSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h--------~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~ 74 (409)
..+++||.||+++++.+.+...+++.... +.++.| -+.-+.+.|+||-+-++... ...++++|.+...+.
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D-F~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRD-FENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecch-hhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 56899999999999977776666655443 333333 24568899999988665544 456799998753311
Q ss_pred ---eee------eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 75 ---IQK------DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 75 ---~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
... ..-...|.-.|..+-....+++|++++.|..|.+|++. ++......... ..-
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---------------~~n 231 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---------------SSN 231 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc---------------ccc
Confidence 000 01123355567778888889999999999999999998 33322221111 135
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECC---CC-----eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQ---AN-----KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
+..+.+|+|+++++++....|++|.+- .| ..+..+++|.+.|..++|+ ++...+++.+.||++++||....
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeeccce
Confidence 668899999999999999999999863 22 2345679999999999999 89999999999999999997532
Q ss_pred ccCCceeeeee-------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 218 ISKGRANGVLM-------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 218 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...++....++ ...+....+.++|+|+.|+.+.. ..++++..++++...
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~----------------------- 366 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYP----------------------- 366 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccch-----------------------
Confidence 22222222221 11233347899999998877654 469999887733221
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.++ .....++.+++|+++|+++++++ |..++++.
T Consensus 367 -----------~~e-----~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 -----------ELE-----DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -----------hHH-----HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 111 11124566778999999999986 56677765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=179.95 Aligned_cols=269 Identities=15% Similarity=0.206 Sum_probs=203.8
Q ss_pred eeeEEecCcee--EeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 5 REVNYSGRGRF--SAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 5 ~~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.-++|-|||.- +++++...+.+.......++|+||.+.|+|++|+.||+.+|+|+.|..|.+|+-.-...+ ..
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KY 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----ee
Confidence 45899999964 444555555555455556799999999999999999999999999999999986543222 23
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|...|.||.|+|-...|++++-. ..-+|............ ...+.+++|..||++++.|-.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks-----------------s~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS-----------------SSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhh-----------------heeEEEeeecCCCcEEEEecc
Confidence 477789999999999999998753 45688776554332221 225899999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCC----CcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 163 DNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADET----GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+|+|.+-+- +++....+. +.+++|.+++|+|.. .+.+++..+..++.++.+ .++.+..-+.-.-...
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~ 226 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPC 226 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCch
Confidence 999999874 455444443 467899999999643 357888888888888886 4555444444444567
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.+.++|.+++.|+.|+.+.+|.-+. -.+-+... .-..
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~W 265 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSW 265 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEeecC-----------------------------------eEEeeccc------ccee
Confidence 899999999999999999999996443 11222211 2267
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
+|+++..|++++++.|+.||+|..|++.
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8899999999999999999999999874
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=197.45 Aligned_cols=251 Identities=16% Similarity=0.248 Sum_probs=195.2
Q ss_pred CCCeEEEEECCCCCE----EEEEeCCCcEEEEEcCC---CeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEE
Q 015301 40 NSRVYTSQFSNDGSF----FVAASQESNIKVYNVDK---NWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNI 111 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~----l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~ 111 (409)
..+-+.++|.+.|.. +|.|..||.|.+||... +.....+.....|.+.|..+.|++... .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 466789999998776 88899999999999875 334444556677889999999999754 9999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCC--CeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKS--DVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~v~ 188 (409)
||+...+........ .....|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.. .+.
T Consensus 144 WDlnn~~tP~~~~~~-------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQ-------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred eccCCcCCCCCCCCC-------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 999886543333211 12336999999874 45678888899999999999888877755543 578
Q ss_pred EEEEeCCCCcEEEEeeCCC---eEEEecccccccCCceeeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCc
Q 015301 189 TVCFADETGHLIFSGSDDS---LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.++|+|.+...+++++.|. .|.+||+| .....++.+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++.+
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 8999988888888888664 59999998 3556777788999999999999866 889999999999999998833
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~ 343 (409)
.+..+.... ..+|.+.|+|... .+++++.||.|.||.+.
T Consensus 288 ----------------------------------vl~~~p~~~------nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 288 ----------------------------------VLGELPAQG------NWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ----------------------------------EeeecCCCC------cceeeeeecCCCcchhhhheeccceeeeeee
Confidence 333333222 3456666776554 88999999999999997
Q ss_pred CCc
Q 015301 344 SGA 346 (409)
Q Consensus 344 ~~~ 346 (409)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=176.75 Aligned_cols=205 Identities=18% Similarity=0.194 Sum_probs=152.1
Q ss_pred eeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 143 FGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
..|+.+.|.| |...|++++.||.|++|.+..+ .+...+..|...|+++.|+|--.+.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3588999999 7788999999999999998654 3455678899999999999888899999999999999997
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+ .......+.+|.+.|..++|+|+|+.+++.+.||+|++|+-++.+.....
T Consensus 708 ~----~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E------------------------- 758 (1012)
T KOG1445|consen 708 A----NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE------------------------- 758 (1012)
T ss_pred h----hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-------------------------
Confidence 6 77788889999999999999999999999999999999998875432221
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC----CeEEEEEccCC--ceEEEeccCCc-ceeeeEEecCc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD----NSVYIYDLVSG--AQVAKLDFHNA-PVRDCCWHPIY 367 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~--~~~~~~~~~~~-~v~~~~~s~~~ 367 (409)
-++... ....+..| .-+|+++++.+.| ..|.+||..+. .++.+..-... .+.--.+.+|.
T Consensus 759 --------g~gpvg-tRgARi~w----acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 759 --------GKGPVG-TRGARILW----ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred --------CCCCcc-CcceeEEE----EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 111111 11112233 3368888887765 56889987654 34443321111 11222455666
Q ss_pred C-eEEeecCCCeEEEEecCCCcc
Q 015301 368 P-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 368 ~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
. ++++|-.|..|++|++-....
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCc
Confidence 6 677888899999999865443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=177.65 Aligned_cols=267 Identities=21% Similarity=0.254 Sum_probs=186.3
Q ss_pred EEEEeCC---CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 89 TDTSLSP---DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 89 ~~~~~s~---~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+..|++ ....|+.+..||.|.++|........... -......|...|..+.|.|....|++++.|.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~---------~lk~~~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER---------QLKKPLAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhh---------hhcccccccceeEeeccCCCceeEEEccCCce
Confidence 3356655 35678999999999999987654431111 00112356778999999997778999999999
Q ss_pred EEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--------------cCC--------
Q 015301 166 IYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--------------SKG-------- 221 (409)
Q Consensus 166 i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~-------- 221 (409)
+++||+++.++... +.+|...|.+++|.|.+...|++|+.||.|.|||+|... .++
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999988876 789999999999999999999999999999999998321 000
Q ss_pred -ceeeeeeccccceeE---EEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 222 -RANGVLMGHLEGITF---IDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 222 -~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
+.......+...|.+ +.+..|...|++++. |+.|++||+++..........
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~------------------------ 259 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR------------------------ 259 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC------------------------
Confidence 111112234444555 556678889999888 999999999986654433211
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--eEEEeccCCcc--eeeeEEecCcCeEEe
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--QVAKLDFHNAP--VRDCCWHPIYPMLIS 372 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~s 372 (409)
....+..+. .-...+.++..+..|.+|++.+.|+.|++|++.+.. ++..+.++... -..-..+||+.+|++
T Consensus 260 --~~~~~~t~s---krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 260 --GSDKYPTHS---KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred --cccCccCcc---cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 111111111 001122344455568889888889999999997653 44555544221 112256899999999
Q ss_pred ecCCCeEEEEecCCCcccCCC
Q 015301 373 SSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~~~~~~ 393 (409)
|+.|...++|.+...+..+..
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred cCCCcceeeeeecCccCChhh
Confidence 999999999999987766443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=158.94 Aligned_cols=285 Identities=18% Similarity=0.230 Sum_probs=200.2
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCC-------CcEEEEEcCCCeeee------eeeec-ccccceEEEEEeCCCCcE
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQE-------SNIKVYNVDKNWKIQ------KDIET-KALRWTITDTSLSPDQRF 99 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d-------~~i~vw~~~~~~~~~------~~~~~-~~~~~~v~~~~~s~~~~~ 99 (409)
.+..|.+.|..++-+|-.+ .|+|+-.+ -.+-||.+....... ....+ ..+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 6778999999999999554 55665432 247899987653221 11111 134458999999999999
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeee
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
|++-. |..|.+|++....... ..... +...++....++-+|+| +++.+++. .|+++..||+++.+..
T Consensus 138 lasm~-dn~i~l~~l~ess~~v-aev~s--------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIV-AEVLS--------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchh-eeecc--------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh
Confidence 98776 8889999998775421 11111 11112344688889999 78877766 4899999999998877
Q ss_pred eEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcE
Q 015301 178 LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 255 (409)
..+ ..|...|..+.|+|....+|++++.||.|++||.| ....++..+.+|...|.++.|+|. .+++++++.|..|
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 766 56888999999998778899999999999999998 467788899999999999999995 4578899999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
.+|....-...+...... .......+. ..-
T Consensus 284 ~Lsca~svSSE~qi~~~~-------------------------dese~e~~d-------------------------see 313 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFED-------------------------DESESEDED-------------------------SEE 313 (370)
T ss_pred EEEecccccccccccccc-------------------------ccccCcchh-------------------------hHH
Confidence 999876533222111000 000000000 000
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCC
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 386 (409)
+++ -+ ....+.++..|...|.+++||.-.. .+|+-+.||.+.|=+++.
T Consensus 314 r~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 11 1223567778999999999998777 667789999999876653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=166.62 Aligned_cols=241 Identities=13% Similarity=0.197 Sum_probs=175.9
Q ss_pred eeeEEecCceeEee---------ccceEEEEeeecCCCceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAA---------DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~---------~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
-|..||..|+.-.. .............+.+++.+|.+.=+.++|||-. ..|++|.--+.|++|...++.-
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W 246 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW 246 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce
Confidence 35667777763221 1111222334455667999999999999999932 2477887778899999988743
Q ss_pred eeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 75 IQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
..-...+.+|...|..+.|||. ...|++|+.||+|+|||++.+........ +.|...|+.+.|+..
T Consensus 247 ~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-------------kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 247 KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-------------KAHNSDVNVISWNRR 313 (440)
T ss_pred eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-------------eccCCceeeEEccCC
Confidence 3334455668889999999995 57889999999999999998754332222 234557999999998
Q ss_pred CCeEEEEEecCeEEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc---------CC
Q 015301 154 GQELVAAGSDNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS---------KG 221 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~ 221 (409)
-.+|++|+.||++.|||+++ ++++..++.|..+|+++.|+|.+...|++++.|.+|.+||+..... .+
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 88999999999999999975 5677889999999999999998899999999999999999862111 00
Q ss_pred ---ceeeeeecc--ccceeEEEEcCC-CCeEEEEeCCCcEEEee
Q 015301 222 ---RANGVLMGH--LEGITFIDSRRD-GRYFISNGKDQTTKLWD 259 (409)
Q Consensus 222 ---~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd 259 (409)
.+.+.+.-| ...+..+.|++. ..++++.+.|| +.||.
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111122234 335777888875 34788888888 45553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=181.02 Aligned_cols=310 Identities=20% Similarity=0.208 Sum_probs=218.2
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNIVD 113 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~ 113 (409)
+.+...+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-. |...+++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 344555677888999999999998778899999999877665554444556799998865 467899999999999997
Q ss_pred cCCCc--cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC-CCCCeEEE
Q 015301 114 VGSSA--RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTV 190 (409)
Q Consensus 114 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~ 190 (409)
--... ............+... +..+.=.-++|.....+|++++.-..|+|||......+..++. ....|+++
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~-----~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLP-----GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred ccccccCCceeEEeeccccccCc-----cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 54332 1111111111111111 1111114467887666777777788999999998887777643 45567777
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc--eeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG--ITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.-+-..++++++|..||.|++||.|... ....+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++......
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 7665678999999999999999998432 23456677888877 99999988665 49999999999999999832111
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
. .....|.... ....++..+++...+|+|+. +.|+||++ .|+.
T Consensus 1294 ~--------------------------------~~iv~~~~yG---s~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1294 F--------------------------------LTIVAHWEYG---SALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQ 1336 (1387)
T ss_pred c--------------------------------ceeeeccccC---ccceeeeeccCCCeeeecCc-ceEEEEec-Chhh
Confidence 0 1111111000 01334566777889999998 99999998 4555
Q ss_pred EEEeccC-------CcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 348 VAKLDFH-------NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 348 ~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+..++.+ .+.+.+++|+|..-+||+|+.|..|.||..+...
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 5544432 3467999999998899999999999999877643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=173.96 Aligned_cols=319 Identities=17% Similarity=0.223 Sum_probs=236.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..|.+|.+.|..+.|...|..|++|+.|..|.+||...+..... -..+|...|....|-|. ...+++++.||++++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence 47889999999999999999999999999999999987754443 24566667888888884 578999999999998
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEE---cCCCC--
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI---PAHKS-- 185 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~-- 185 (409)
=.+............ ..|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.+...+ ..+..
T Consensus 214 s~i~~t~~~e~t~rl------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 214 SEILETGYVENTKRL------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred eeeccccceecceec------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 876544432222211 2456689999999854 46889999999999999877654433 22333
Q ss_pred -CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC--ceeeeee------ccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 186 -DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG--RANGVLM------GHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 186 -~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
....++..|.+.+.+++++.|..+++||.|...... ..+..+. .....|++++|+.++.-|+++..|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 567889998888899999999999999987432221 1112221 2234689999998888788888888899
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
++.-............ .......+.+++|....++...- -|.|...|+++|+.-|.
T Consensus 362 LF~~~~~~G~~p~~~s---------------------~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSS---------------------PREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSGSDCGH 417 (559)
T ss_pred EeccccccCCCCCCCc---------------------chhhccchhhcccccccccceee---eccCccceEEecCccce
Confidence 9943321111100000 00112233488998777755443 37788999999999999
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.||+-.+++.+..+.+...-|+||.=+|--..||++|-|.-|+||...+.+..
T Consensus 418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 999999999999999887779999999999999999999999999987554443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=152.22 Aligned_cols=256 Identities=15% Similarity=0.244 Sum_probs=183.2
Q ss_pred ceeeEEecCceeEeeccceEEEEeee---cCCCc----eeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCC--
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLP---VNGPW----KVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKN-- 72 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~---~~~~~----~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~-- 72 (409)
+.++.|.+-|+..++++.+.....+. ....+ ..+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 56889999999999877664333333 23333 4568999999999954 5899999999999999985311
Q ss_pred ----eeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE
Q 015301 73 ----WKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146 (409)
Q Consensus 73 ----~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (409)
...............|+.+.|.|. |-.||+++.||.+|||+...........+...... .......+..+..
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~--~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN--VIDPPGKNKQPCF 173 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh--ccCCcccccCcce
Confidence 122233334445568999999995 77899999999999998865433222222211111 1111123455788
Q ss_pred EEEEcC---CCCeEEEEEec-----CeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCC---cEEEEeeCCCeEEE
Q 015301 147 SVKFST---DGQELVAAGSD-----NFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETG---HLIFSGSDDSLCKV 211 (409)
Q Consensus 147 ~~~~~~---~~~~l~~~~~d-----~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i 211 (409)
|+.|+| ...+|++|+.+ +.+.||....+. .+.++.+|+.+|++++|.|.-| .+|++++.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 999998 35678888765 478888765432 3456789999999999996444 5899999999 999
Q ss_pred ecccccc----------------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 212 WDRRCFI----------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 212 wd~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
|.++... -.-+.+..+..|++.|..+.|+-.|..|.+.+.||.|++|...-
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9986210 01123445678999999999999999999999999999997643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=167.95 Aligned_cols=225 Identities=14% Similarity=0.234 Sum_probs=159.5
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAI 108 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 108 (409)
.....|.||.+-|+|++|+.+|.+|++|++|-.+.|||.-..+.+.. ...+|...|.++.|-| +.+.+++|+.|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34468999999999999999999999999999999999875544443 3457888999999998 4678899999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeee---------
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSL--------- 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--------- 178 (409)
|+++|+...+........ .........|...|..++-.|++ ..+.+++.||+|+-+|++......
T Consensus 119 i~lfdl~~~~~~~~d~~~-----~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGM-----EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEEEecccccccccccCc-----cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 999999863321111000 00111112566678999999988 788999999999999997632111
Q ss_pred -EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC----Cc----------eeee-eeccc-----------
Q 015301 179 -RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK----GR----------ANGV-LMGHL----------- 231 (409)
Q Consensus 179 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~----------~~~~-~~~~~----------- 231 (409)
.+...--...++..+|.+..+|++|+.|-..++||.|..... +. ++.. ..+|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 111122345789999999999999999999999995521110 00 1111 11121
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
..++-+.|+|+|..|++.-....|+++|+..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256678999998877766666799998755
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=168.57 Aligned_cols=270 Identities=15% Similarity=0.194 Sum_probs=192.6
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE--ecCCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
...+++||+...+............ .+.++.|+.... |+++ +.|..+++|.-.... ..........
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-~~Vp~~~k~~--------- 78 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-PEVPRVRKLT--------- 78 (673)
T ss_pred CCceEEeecccccCccccccCCCCC-cceeeeccccce-EEEeecCCceeEEEecccCCC-Cccceeeccc---------
Confidence 3469999998765544443333222 489999987654 5554 467788888654431 1111111000
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
...-.|++......++++|+..+.|+|||++...+.+.++.|.+.|+++.|+ ....+|++++..|.|.|..+.
T Consensus 79 ---gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~--- 151 (673)
T KOG4378|consen 79 ---GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK--- 151 (673)
T ss_pred ---cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc---
Confidence 0023444444556899999999999999999777777889999999999999 889999999999999999964
Q ss_pred cCCceeeeeecc-ccceeEEEEcCCCCe-EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 219 SKGRANGVLMGH-LEGITFIDSRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 219 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
++.....+... ...|.-+.|+|..+. |.+++.+|.|.+||+......
T Consensus 152 -t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------------------------------ 200 (673)
T KOG4378|consen 152 -TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------------------------------ 200 (673)
T ss_pred -cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc------------------------------
Confidence 44444444433 345668899997664 567888999999999874321
Q ss_pred ccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
....+.|.. .+..++|+| +..+|++.+.|..|++||....+....+. ...+.+.++|+++|.+|+.|..
T Consensus 201 ---~~~~~~HsA------P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 201 ---FHASEAHSA------PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred ---cchhhhccC------CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 122233432 222335665 45678889999999999998877776665 4668999999999999999999
Q ss_pred CCeEEEEecCCCccc
Q 015301 376 DCNIVRWEIPGIGEA 390 (409)
Q Consensus 376 dg~i~iw~~~~~~~~ 390 (409)
.|.|..||+...+.+
T Consensus 271 ~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAP 285 (673)
T ss_pred CceEEEEecccCCCC
Confidence 999999999876654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=172.65 Aligned_cols=276 Identities=13% Similarity=0.114 Sum_probs=209.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.|+.++|-|||..|+.+..+ .+.+||...+..+.. .++|...|++++|+.||+.+|+|+.|..|.+|+..-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 79999999999998887644 699999999866554 6778889999999999999999999999999986533221
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 201 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 201 (409)
+. .|...|.|+.|+|-...|++++-. ..-+|..+... +...+ ....+.+++|. .+|.+++
T Consensus 89 --kY--------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWt-nDGqyla 148 (1081)
T KOG1538|consen 89 --KY--------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWT-NDGQYLA 148 (1081)
T ss_pred --ee--------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeec-CCCcEEE
Confidence 11 244479999999998889988753 46688865443 22222 35678899999 9999999
Q ss_pred EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-----CeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-----RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 202 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
.|-.+|+|.+-+-. .+....+..--+.+++|.+++|+|.. ..+++.....++.+|.+........
T Consensus 149 lG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~-------- 218 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD-------- 218 (1081)
T ss_pred EeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--------
Confidence 99999999998742 12222333334577899999999953 3677777778888887754111000
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
....|.. .++.+-++|.+++.|+.|+.+.+|. +.|-.+.++-....
T Consensus 219 ----------------------r~L~FdP-----------~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~ 264 (1081)
T KOG1538|consen 219 ----------------------RALNFDP-----------CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS 264 (1081)
T ss_pred ----------------------ccCCCCc-----------hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccce
Confidence 0001111 1335778999999999999999996 57888888877888
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.|+.++..|++++++.|+.||+|-.|++-.
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 999999999999999999999999999854
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=170.61 Aligned_cols=281 Identities=12% Similarity=0.148 Sum_probs=200.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
+.+.||++.........+.... .|.++.|+|. ..+++.|..+|+|.+||+..+....... .......
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s---~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~---------ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPS---EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG---------LSALEVS 289 (555)
T ss_pred ceEEEEecCCCCCceEEEecCC---ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc---------ccccccc
Confidence 4799999988744444333333 7999999995 5677778899999999998876532111 1222235
Q ss_pred cceeeEEEEEcCCCCe--EEEEEecCeEEEEECCCCeeee------EEc------CCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 141 DEFGIFSVKFSTDGQE--LVAAGSDNFIYVYDLQANKCSL------RIP------AHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~--l~~~~~d~~i~v~d~~~~~~~~------~~~------~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
|..+++.+.|..+..- |++++.||.|..|+++.-.... ... .....+++++|.+.+.+.+++|+.+
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~ 369 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE 369 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence 7778999999875444 9999999999999876433211 011 1234689999998899999999999
Q ss_pred CeEEEecccccccCC----ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 207 SLCKVWDRRCFISKG----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 207 g~i~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
|.|.--+........ +.......|.++|.++.++|=+..++..+.|.+++||.....
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~------------------- 430 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI------------------- 430 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-------------------
Confidence 999874322111112 234456678899999999997765555555999999987621
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccC--CceEEEeccCCccee
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVS--GAQVAKLDFHNAPVR 359 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~v~ 359 (409)
..++..+..+. ..++..+|||.. ..++++..||.+.+||+.. .+++.+.+.+....+
T Consensus 431 --------------~~Pl~~~~~~~------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 431 --------------ASPLLSLDSSP------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT 490 (555)
T ss_pred --------------CCcchhhhhcc------ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence 23333344333 224566777755 5777888899999999965 356666666667778
Q ss_pred eeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 360 DCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 360 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
.+.|++.|+.|+.|...|.+.+|++......+.+
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcCchhhccCc
Confidence 8899999999999999999999999865544444
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-21 Score=164.62 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=221.0
Q ss_pred ceeeEEecCceeEee-ccceEEEEeeecCCCc-----eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Ceeee
Q 015301 4 GREVNYSGRGRFSAA-DSCHVLSRYLPVNGPW-----KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~-----~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~ 76 (409)
.+++.+++.|.|... ........+.+.+... .-..|.-.++|.++||+++++|+|..||.|.+|.--. .....
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 578999999887444 2222222233332211 2235777899999999999999999999999998543 11112
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.....+=|...|.+++|+++|.+|++|+..|.+.+|.+.+++...+.++.. +|..+.++||+.+
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs----------------~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS----------------PILHIVVSPDSDL 306 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC----------------eeEEEEEcCCCCe
Confidence 222334455689999999999999999999999999999998655555433 6999999999999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCC-----------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAH-----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
.+....|..|.+....+.+....+.+- .+-.+.++++ |..+.++-.+..|.|.+||+- +...+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~ 381 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIY 381 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEecc----ccceee
Confidence 999999999999988776655444321 3346778888 566777778889999999975 222222
Q ss_pred eee-----------ccccceeEEEEcCCCCeEEEEe--------CC--CcEEEeeCCCCccccccccccccccccccccc
Q 015301 226 VLM-----------GHLEGITFIDSRRDGRYFISNG--------KD--QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 226 ~~~-----------~~~~~v~~~~~~~~~~~l~~~~--------~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.+. .+...++.++.+..|.++++.- .| -.+++|-...........
T Consensus 382 ~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~-------------- 447 (792)
T KOG1963|consen 382 KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN-------------- 447 (792)
T ss_pred eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE--------------
Confidence 221 1233567777777888888763 22 257778765532211110
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc----------eEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----------QVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~----------~~~~~~~~ 354 (409)
......|.. .....++.... .....++++.||.++||-+...+ +...-.-|
T Consensus 448 ---------------T~I~~PH~~--~~vat~~~~~~--rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 448 ---------------TKINNPHGN--AFVATIFLNPT--RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred ---------------EEEecCCCc--eeEEEEEecCc--ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 111122322 22222222222 22378999999999999884322 11111237
Q ss_pred CcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..++++++|+.||..|+ .+.|+.|.+||..+.
T Consensus 509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 88999999999996555 557889999999873
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=160.56 Aligned_cols=254 Identities=18% Similarity=0.276 Sum_probs=185.1
Q ss_pred cccceEEEEEeCCCC--cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEE
Q 015301 83 ALRWTITDTSLSPDQ--RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVA 159 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 159 (409)
-+.++|++++|+|.. +.+|+|...|+|-+||+.+.+....... ....|..+|.++.|+| +-..+++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-----------~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-----------LFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-----------EeccCCccccceEecCCChhheee
Confidence 355689999999964 5788899999999999964332211111 1124666899999999 5567999
Q ss_pred EEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
.+.||+|++-|++..... ..+.........+.|+ .+...++.+..=|...+||+|. .+.....+.-|...|.++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~---~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT---DGSEYENLRLHKKKITSV 328 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec---CCccchhhhhhhccccee
Confidence 999999999999876433 3333345567788888 5555666666667999999983 444456667788899999
Q ss_pred EEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 238 DSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 238 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+++|.. .+|++++.|++.+|||++....... ++.....|. ..+
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr------rsV 372 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR------RSV 372 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc------cee
Confidence 999954 5789999999999999998543321 112222233 345
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEc----cCCceEEEeccCCc------ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDL----VSGAQVAKLDFHNA------PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~----~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+..|||.+..|++.+.|..|+|||. ...++..++. |.. ......|.|+..++++|-.-..|-|+|-..
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 56678888888999999999999998 3445555554 321 234568999999999999888899999876
Q ss_pred Cc
Q 015301 387 IG 388 (409)
Q Consensus 387 ~~ 388 (409)
++
T Consensus 452 ~q 453 (498)
T KOG4328|consen 452 GQ 453 (498)
T ss_pred CE
Confidence 65
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=155.20 Aligned_cols=353 Identities=14% Similarity=0.157 Sum_probs=217.4
Q ss_pred eeEEecCceeEeeccce-EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 6 EVNYSGRGRFSAADSCH-VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVA-ASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
-..|||+|+|+|+.... ++.+....-....+--.-..|.-+.|+.|.-++++ ...|+.|.+|++...+-..++....
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~- 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ- 91 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC-
Confidence 45799999999986543 33332221111122222467888999988877654 4678899999998775444443333
Q ss_pred ccceEEEEEeCCCCcE-EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 84 LRWTITDTSLSPDQRF-LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.++.+++|||||+. |.+...+-.|.+|.+.+.+......... .+..++|+|+|++.+.++.
T Consensus 92 --agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~----------------~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 92 --AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT----------------NVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred --CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc----------------CceeEEECCCCceeeeeec
Confidence 37999999999955 4566678899999998877544333222 4678999999999888775
Q ss_pred cC---eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEEE
Q 015301 163 DN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFID 238 (409)
Q Consensus 163 d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~ 238 (409)
-. .+.+..-.....+..+...+-..+.+.|+ |+++.|+ +||- .-....+. .-.-.+..++
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~la---------Vwd~------~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWLA---------VWDN------VLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEEE---------Eecc------hhhheeeeeeeccceeEEE
Confidence 31 12222222334455566667778999999 8887776 4551 11111111 1224688899
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCccccccc---------------ccccccccccccccccccceec-----------
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN---------------SRLRDYDWDYRWMEYPSYARRL----------- 292 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~----------- 292 (409)
|+|.+++|++|+.|+.+++.+--+.+...... ............+.+.+.....
T Consensus 218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 99999999999999999987643321111100 0000001111111111111000
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC--CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD--NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
.......+..++...........+--++||+|..++++-... +.+.+||++..+....+. ...+|....|+|....|
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL 376 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRL 376 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceE
Confidence 000011122222212112222334456899999999987654 689999998877655554 56789999999998888
Q ss_pred EeecCCCeEEEEecCCCcccCCCc
Q 015301 371 ISSSWDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~~~~~~~~~ 394 (409)
+.+.....+++|..........|+
T Consensus 377 ~vctg~srLY~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 377 VVCTGKSRLYFWAPSGPRVVGVPK 400 (447)
T ss_pred EEEcCCceEEEEcCCCceEEecCC
Confidence 888777889999987755444443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=149.95 Aligned_cols=210 Identities=17% Similarity=0.239 Sum_probs=158.4
Q ss_pred CCCeEEEEEC-------CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc---eEEEEEeCCCCcEEEEEecCCEE
Q 015301 40 NSRVYTSQFS-------NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW---TITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 40 ~~~v~~~~~s-------~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
...|+..+|- |+..++|+.+.+.-|.+||.-+++.... .....|.. ...+++|+|||.+|++| ....|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-hhhhhhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 3557777763 6778999999999999999998844333 22222322 35689999999999865 47899
Q ss_pred EEEEcC-CCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVG-SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
++||+. .+.......... ....+..+-+.+++|+| +.+.+++|+....+-|+.-..+.++..+-+|.+.|
T Consensus 182 rvFdt~RpGr~c~vy~t~~--------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVT--------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred EEeeccCCCCCCcchhhhh--------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 999994 443222221111 11123344689999999 55689999999999999988999999999999999
Q ss_pred EEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeecccc-ceeE--EEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGHLE-GITF--IDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+.+.|. ++++.|++|+. |-.|..||+| ....++..+..|.+ .-.. ....|++++|++|+.||.|++||++..
T Consensus 254 ThL~~~-edGn~lfsGaRk~dkIl~WDiR---~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 254 THLQWC-EDGNKLFSGARKDDKILCWDIR---YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred eeEEec-cCcCeecccccCCCeEEEEeeh---hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 999999 89999999884 7789999998 35566666766765 2233 445788999999999999999999873
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-20 Score=161.70 Aligned_cols=292 Identities=29% Similarity=0.453 Sum_probs=220.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEe-CCCCc-EEEEEec-CCEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSL-SPDQR-FLVYASI-CAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-dg~i~ 110 (409)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333222121 35666666 88887 5555444 89999
Q ss_pred EEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
+|+... ....... ..|...|..++|+|++..+++++. ++.+++|+...+..+..+..|...|.
T Consensus 138 ~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 138 LWDLSTPGKLIRTL---------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred EEEecCCCeEEEEE---------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 999987 2211111 134446889999999998888875 99999999999888888888999999
Q ss_pred EEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ +++. .+++++.|+.+++||.+ .+.... .+..|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 203 ~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 275 (466)
T COG2319 203 SLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS- 275 (466)
T ss_pred EEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-
Confidence 99999 7776 55555999999999854 555555 577787775 448999998899999999999999987322
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.+..+.+|. ..+....++|++..+++++.|+.+.+|+..+..
T Consensus 276 --------------------------------~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 276 --------------------------------LLRTLSGHS------SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred --------------------------------EEEEEecCC------ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 112222231 233344678888888889999999999998887
Q ss_pred eEEEec--cCCcceeeeEEecCcCeEEee-cCCCeEEEEecCCCc
Q 015301 347 QVAKLD--FHNAPVRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 388 (409)
...... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 776665 788889999994332455555 688999999998765
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=138.18 Aligned_cols=284 Identities=15% Similarity=0.250 Sum_probs=191.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.|.+-+++|.+++|++|..+|.|-+..+.+- ..........+|+++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4666789999999999999999999998632 1122334457899999999998 45677666 599999988
Q ss_pred CCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 115 GSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
..... .......+....... ..-.-..|+++...|..+-++.++.|+.++-||+++|+....+++|++.|.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~---~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQV---DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCcccc---CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 65443 111111111000000 00111258999999987778888889999999999999999999999999999985
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec---------cc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG---------HL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.....+++|++||++++||.+ +.+.+..+.. |. ..|-+++. +..+|++|+. ..+.+|.++..
T Consensus 166 -~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 166 -NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred -ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence 556678999999999999976 5555544432 22 23445544 4667777654 46999999985
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
++... ..+.++.. ...| +.+.+++++..+.|.-|.+
T Consensus 238 e~t~v--------------------------------fpipa~v~---------~v~F--~~d~vl~~G~g~~v~~~~l- 273 (325)
T KOG0649|consen 238 ESTCV--------------------------------FPIPARVH---------LVDF--VDDCVLIGGEGNHVQSYTL- 273 (325)
T ss_pred CceEE--------------------------------Eeccccee---------Eeee--ecceEEEeccccceeeeee-
Confidence 43322 22222221 1122 2457888888888999987
Q ss_pred CCceEEEeccCCcceeeeEEecC-cCeEEeecCCCeEEEEe
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPI-YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 383 (409)
+|..-...+......+...|+.. -++|-.++..+.+.++.
T Consensus 274 ~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 274 NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 56555555555555666666533 23566667777777653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=152.79 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=179.0
Q ss_pred eEEecCc----eeEeeccceEEEEeee---cCCCceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 7 VNYSGRG----RFSAADSCHVLSRYLP---VNGPWKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 7 ~~~s~dg----~~~~~~~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
++|+-|- -|+++++...+.+.+. .+....+.+|.+.|+.+.|.|+. ++++++|.|.+|++|++++...+...
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 4555432 3677766554444433 33445788999999999999976 68899999999999999999999988
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee----c------e-eeeeeeec--CCCCcceee
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT----E------I-HKGLDFSA--DGDEDEFGI 145 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~----~------~-~~~~~~~~--~~~~~~~~v 145 (409)
-...+|...|.++.|++++.+|++++.|.++.+|++...+........ . . .....|.. ...-|...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 889999999999999999999999999999999999855432211111 0 0 00011111 234566677
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCC-Ce-------------eeeEEcCCCCCeEEEEEe-CCCCcEEEEeeCCCeEE
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQA-NK-------------CSLRIPAHKSDVNTVCFA-DETGHLIFSGSDDSLCK 210 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~-------------~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~ 210 (409)
-|+.|- |+++++-+-++.|..|.... ++ .+..+.-....|.-+.|. .+-.++|+.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 777774 57888888899999998721 11 122233334455555543 15678999999999999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+||++...+..............|...+|+.|+..|+..+.|+.|.-||-.
T Consensus 333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999984322211111122234578899999999999999999999999853
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=146.45 Aligned_cols=212 Identities=13% Similarity=0.104 Sum_probs=170.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc-CCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV-GSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~-~~~ 117 (409)
-..+|+|.+|++|+..+|++.....|.||.............+..|...|+.+.|+|..+.|++++.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999999887656666778889999999999999999999999999999999 555
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee----eEEcCCCCCeEEEEEe
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS----LRIPAHKSDVNTVCFA 193 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~ 193 (409)
+-.....+.... ..++++.|+|.++.|++|+....|.||-++...-= ..-+.+.+.|+++.|+
T Consensus 89 ~WkptlvLlRiN-------------rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRIN-------------RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEec-------------cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 544444444332 25999999999999999999999999988654321 1224567889999999
Q ss_pred CCCCcEEEEeeCCCeEEEeccccc--------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCF--------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
+++-+|++|+.|+.++++..-.. ..-+..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|
T Consensus 156 -pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 -PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred -CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 88999999999999999974210 111222333334567899999999999999999999999999
Q ss_pred CCCCc
Q 015301 260 IRKMS 264 (409)
Q Consensus 260 ~~~~~ 264 (409)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 87644
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=144.57 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=196.5
Q ss_pred CCeEEEEECC--C-CCEEEEEeC----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-----EEEEEecCCE
Q 015301 41 SRVYTSQFSN--D-GSFFVAASQ----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-----FLVYASICAI 108 (409)
Q Consensus 41 ~~v~~~~~s~--~-~~~l~t~~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~ 108 (409)
-+++++.||. + +.+||.|+. .+.|.|-.++.............|..+++.+.|.|+.. .||++ +..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 4577888873 2 346888874 45677766553322222222356778999999999863 45554 467
Q ss_pred EEEEEcCCCccc--cccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee---eeEEcC
Q 015301 109 VNIVDVGSSARE--SLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC---SLRIPA 182 (409)
Q Consensus 109 i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~ 182 (409)
+|+|.+...+.. ....+.. . ....+..++++..|+. +-+++.+.+-|.+..|||++++.. ...+-.
T Consensus 123 LRlWri~~ee~~~~~~~~L~~-~-------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNN-N-------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred EEEEeccCcCCceehhhhhcc-C-------cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 999999853321 1111111 1 1124455899999998 677888888999999999998733 455678
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCC-CcEEEeeC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKD-QTTKLWDI 260 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~iwd~ 260 (409)
|...|..++|.....+.|++.+.||.+++||+|.... ...+..-.....+...++|++ |.+++++-..| ..|.+.|+
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 9999999999955567899999999999999984321 222222222356788889987 45677776554 57999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i 339 (409)
+.+ ..++..+++|... +..++|.| ....|++++.|..+.+
T Consensus 274 R~P---------------------------------~tpva~L~~H~a~------VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 274 RVP---------------------------------CTPVARLRNHQAS------VNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred cCC---------------------------------CcceehhhcCccc------ccceEecCCCCceeeecCCcceEEE
Confidence 874 3557778888733 33345555 3578999999999999
Q ss_pred EEccCCc------eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEE
Q 015301 340 YDLVSGA------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRW 382 (409)
Q Consensus 340 ~d~~~~~------~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 382 (409)
||+.+.- ++..+. -.+.|+.+.|++... .++.+. ++.+.+-
T Consensus 315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 9997532 233333 567899999997544 666664 4555543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=156.12 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=174.8
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCC-Cccccccceeceeeee
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGS-SARESLANVTEIHKGL 132 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~-~~~~~~~~~~~~~~~~ 132 (409)
+++...++.|.+|++.+...+...... ...+.+..++++|++++|++++ .++.|.+|++.. +.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 344467899999999743232221111 1223577899999999987764 578899999963 2221111100
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCC-e---eeeEEcCCCCCeEEEEEeCCCCcEEEE-eeCC
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN-K---CSLRIPAHKSDVNTVCFADETGHLIFS-GSDD 206 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d 206 (409)
.......++++|+++++++++. ++.|.+|++.+. . .+..+. +......++++ |+++++++ ...+
T Consensus 78 --------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-p~g~~l~v~~~~~ 147 (330)
T PRK11028 78 --------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID-PDNRTLWVPCLKE 147 (330)
T ss_pred --------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC-CCCCEEEEeeCCC
Confidence 0113568999999999888765 789999999643 2 222232 33446778898 67777754 4567
Q ss_pred CeEEEecccccccCCcee------eeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccc
Q 015301 207 SLCKVWDRRCFISKGRAN------GVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+.|.+||+.. .+... .... .......+.|+|++++++++.. ++.|.+|+++......
T Consensus 148 ~~v~v~d~~~---~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~------------ 211 (330)
T PRK11028 148 DRIRLFTLSD---DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI------------ 211 (330)
T ss_pred CEEEEEEECC---CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE------------
Confidence 9999999852 12111 0111 1234578999999999988876 8999999997421000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccC---C
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH---N 355 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~---~ 355 (409)
..+..+...............+.++|++++++++.. ++.|.+|++.......++.++ .
T Consensus 212 ------------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 212 ------------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred ------------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc
Confidence 001111100000000011123568899999999865 689999999654322222222 2
Q ss_pred cceeeeEEecCcCeEEeecC-CCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSW-DCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 386 (409)
.....+.++|+|++|+++.. +++|.+|+++.
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 24568999999998887764 89999998863
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=162.18 Aligned_cols=272 Identities=11% Similarity=0.126 Sum_probs=198.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----CeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
+++..|...|+.++|.|....|++++.||++++|+++. ...+.......+|.++|.|++..+++..+.+|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 47889999999999999999999999999999999932 2455677788999999999999999999999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCC
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSD 186 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~ 186 (409)
|+.|++.... . ..+............+|...|+.+++++....|++++.||+++.|+.....+ ..+. ...+.
T Consensus 368 I~~w~~p~n~-d----p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 368 IRCWNLPPNQ-D----PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeeccCCCC-C----cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999886221 1 1112222234444557888999999999999999999999999999876665 2231 22234
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
...+.+-.......++...-+.-.++++. ....+..+.. ....+..+.++|...+.+++..|+.|+++|
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 46666652222233333233333333322 2222222211 123467788899999999999999999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
..+ +..+.....|. ..+.++++.|+|.+|++++.|+.+++
T Consensus 518 n~~----------------------------------~~~l~s~~a~~------~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 518 NKT----------------------------------GKILHSMVAHK------DSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccc----------------------------------cccchheeecc------ceecceeecCCCceEEeecCCceeeh
Confidence 887 45555555555 44567789999999999999999999
Q ss_pred EEccCCceEEEeccCC
Q 015301 340 YDLVSGAQVAKLDFHN 355 (409)
Q Consensus 340 ~d~~~~~~~~~~~~~~ 355 (409)
|.+....++.....|.
T Consensus 558 ~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 558 WKLDVKTCVLESTAHR 573 (577)
T ss_pred hhccchheeecccccc
Confidence 9998887777766664
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-19 Score=138.34 Aligned_cols=280 Identities=14% Similarity=0.233 Sum_probs=197.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~ 117 (409)
...+..+.|+.+...|..|+.|| .++|+.+....... .......|..+-|+. .++|..+. ...+++.+++..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~---~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS---KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc---ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 78998876544222 111223577777874 45555543 345888888766
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFAD 194 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~ 194 (409)
.......... +|.++.++ .+.|+++-. ..|+|||+++.+++.++. .+...+.++.++
T Consensus 79 ~~ICe~~fpt----------------~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n- 138 (391)
T KOG2110|consen 79 TTICEIFFPT----------------SILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN- 138 (391)
T ss_pred ceEEEEecCC----------------ceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccC-
Confidence 5443333222 58888885 445666654 459999999999988874 345556666666
Q ss_pred CCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-EEEeeCCCCcccccccc
Q 015301 195 ETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 195 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~ 271 (409)
..+.+++.-+ ..|.|.+||+ .+.+....+..|.+++.+++|+++|.+||+++..|+ |+++.+.+
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~----~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------- 205 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDT----INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------- 205 (391)
T ss_pred CCCceEEecCCCCCceEEEEEc----ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC---------
Confidence 5556776533 4689999995 478888899999999999999999999999999885 78999877
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce----
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ---- 347 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---- 347 (409)
++.+..|+.... ...+++++|+|++++|++.++.++|+||.++.-..
T Consensus 206 -------------------------G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~ 256 (391)
T KOG2110|consen 206 -------------------------GQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE 256 (391)
T ss_pred -------------------------ccEeeeeeCCce----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC
Confidence 455555554332 35578899999999999999999999998853210
Q ss_pred ---------------------------------EEEeccCCcce-eeeEEe--cCcCeEEeecCCCeEEEEecCCC
Q 015301 348 ---------------------------------VAKLDFHNAPV-RDCCWH--PIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 348 ---------------------------------~~~~~~~~~~v-~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
..+.+...... ..+.+. +..+.+..++.||.++.|.++..
T Consensus 257 ~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 257 SPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00001111111 223343 35568888999999999999763
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=143.45 Aligned_cols=254 Identities=20% Similarity=0.365 Sum_probs=178.9
Q ss_pred cceEEEEEeCC--C-CcEEEEEec----CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC--
Q 015301 85 RWTITDTSLSP--D-QRFLVYASI----CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-- 155 (409)
Q Consensus 85 ~~~v~~~~~s~--~-~~~l~~~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 155 (409)
..++.++.|+. + ..+||.|+. .+.|.+..+.......... ....|..+++.+.|.|+..
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------ANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------CCCCCCCCccceEecCCcccc
Confidence 34688888883 2 457888873 4566666554322211111 1135777999999999763
Q ss_pred ---eEEEEEecCeEEEEECCCCeeee----EE-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce
Q 015301 156 ---ELVAAGSDNFIYVYDLQANKCSL----RI-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 156 ---~l~~~~~d~~i~v~d~~~~~~~~----~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 223 (409)
+|++. +-.+++|.+...+... .+ ..+..++++..|+.-+.++|.+.+-|-+..|||+... ..+..
T Consensus 112 ~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~-~~~~v 188 (364)
T KOG0290|consen 112 YPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG-VSGTV 188 (364)
T ss_pred Ccchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec-cccce
Confidence 45544 3579999987322111 11 2467899999999888999999999999999998621 13345
Q ss_pred eeeeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 224 NGVLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
...+..|...|..++|...+ +.|++.+.||.+++||++..+.....
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII--------------------------------- 235 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII--------------------------------- 235 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE---------------------------------
Confidence 66788899999999999855 47899999999999999985433222
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCC-ceEEEeccCCcceeeeEEecCcC-eEEeecCCCeE
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNI 379 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i 379 (409)
++.........+..++.. |-+++|+-..| ..|.|.|++.. .++.++++|.+.|++++|.|... .|.|+|.|..+
T Consensus 236 YE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred ecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 111111122223333222 45677776655 57999999875 67899999999999999999766 89999999999
Q ss_pred EEEecCCCcc
Q 015301 380 VRWEIPGIGE 389 (409)
Q Consensus 380 ~iw~~~~~~~ 389 (409)
.+||+.....
T Consensus 313 liWDl~q~~~ 322 (364)
T KOG0290|consen 313 LIWDLQQMPR 322 (364)
T ss_pred EEEecccccc
Confidence 9999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=149.83 Aligned_cols=206 Identities=17% Similarity=0.256 Sum_probs=160.7
Q ss_pred CCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC-------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 138 GDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN-------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 138 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
..+|..+|..++|+| +...|++|+.|.+|.||.+..+ +++..+.+|...|..++|+|.-.+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 347888999999999 6778999999999999998754 45667889999999999998889999999999999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
.+|++. ++..+..+. |.+.|.+++|+.||.+|++.+.|..|+|||.++.
T Consensus 157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-------------------------- 205 (472)
T KOG0303|consen 157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-------------------------- 205 (472)
T ss_pred EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC--------------------------
Confidence 999964 777777776 9999999999999999999999999999999983
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCce---EEEeccCCcceeeeEE
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQ---VAKLDFHNAPVRDCCW 363 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~ 363 (409)
..+..-.+|...... +.+ |-.+|.++-+|. .+..+-+||..+.+. ..++. .+..|.---|
T Consensus 206 --------~~v~e~~~heG~k~~-Rai----fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy 271 (472)
T KOG0303|consen 206 --------TVVSEGVAHEGAKPA-RAI----FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY 271 (472)
T ss_pred --------cEeeecccccCCCcc-eeE----EeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence 333333444432222 222 333577555553 367899999876543 34444 3456766678
Q ss_pred ecCcCeEEeec-CCCeEEEEecCCCc
Q 015301 364 HPIYPMLISSS-WDCNIVRWEIPGIG 388 (409)
Q Consensus 364 s~~~~~l~s~~-~dg~i~iw~~~~~~ 388 (409)
.+|.++++.+| .|+.|+-|++.+..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 89988776654 69999999997754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-19 Score=152.58 Aligned_cols=341 Identities=13% Similarity=0.111 Sum_probs=230.0
Q ss_pred eeeEEecCceeEeeccceEEEEeee--cCCCceeecCCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLP--VNGPWKVDGMNSRVYTSQFSNDGS---FFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+.-.||+|++|+.......+..|.. ..+...+.+|..+++.+.+.|... ++.+++.||.|++||...+..+....
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 4457899999887766655554443 344458999999999999987554 67799999999999975432211100
Q ss_pred e-------------------------------------------------------------------------------
Q 015301 80 E------------------------------------------------------------------------------- 80 (409)
Q Consensus 80 ~------------------------------------------------------------------------------- 80 (409)
.
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 0
Q ss_pred ---------------------cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-CccccccceeceeeeeeeecCC
Q 015301 81 ---------------------TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 81 ---------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
...|...+++.++||+++++|+|..||.|.+|.--. ............
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW---------- 249 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW---------- 249 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe----------
Confidence 001222468899999999999999999999996544 222222222222
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
|..+|.+++|+++|.+|++|+..+.+.+|.+++++ .+-++.-.++|..+.++ +++++.+....|..|.+.......
T Consensus 250 --H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 250 --HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred --cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchh
Confidence 33479999999999999999999999999999998 55577788999999999 899999999999999998753111
Q ss_pred cCCceeeeee--------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 219 SKGRANGVLM--------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 219 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
....+..+. ...+-.+.++++|..+.++..+..|.|.+||+-+.........
T Consensus 326 -~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v------------------- 385 (792)
T KOG1963|consen 326 -IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV------------------- 385 (792)
T ss_pred -hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE-------------------
Confidence 111111111 1234467788999777888899999999999977433211110
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--------CC--CeEEEEEccCCceEEEe-----ccCC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--------SD--NSVYIYDLVSGAQVAKL-----DFHN 355 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--------~d--g~v~i~d~~~~~~~~~~-----~~~~ 355 (409)
.....+.........+...+.+..|.++++.- .| -.+++|-......-..+ ..|.
T Consensus 386 ----------~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 386 ----------CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred ----------EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 00111111112333444555666688888864 22 35788876554332222 3576
Q ss_pred cceeeeEEe-cCcC-eEEeecCCCeEEEEecCCCcc
Q 015301 356 APVRDCCWH-PIYP-MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 356 ~~v~~~~~s-~~~~-~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+...++. +... ..++++.||.+++|-+.....
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n 491 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN 491 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence 665555554 3333 899999999999999965443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=150.64 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=161.7
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCC-CcEEEEEecCCE
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPD-QRFLVYASICAI 108 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 108 (409)
.+.||+++|..++|+|- ...+|+||.|.+|.||.+..+... .....+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 67799999999999994 457899999999999999876332 223456788889999999996 578899999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC-e
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD-V 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v 187 (409)
|.+|++.+++...... |...|+++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+. -
T Consensus 156 v~iWnv~tgeali~l~----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~ 219 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP 219 (472)
T ss_pred EEEEeccCCceeeecC----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc
Confidence 9999999997643322 3446999999999999999999999999999999999888777653 3
Q ss_pred EEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 263 (409)
..+.|. .++.++-+|- .+..+-+||...... ......+. ....|.---|.+|.+.+..++ .|+.|+.|.+.+.
T Consensus 220 ~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~e-P~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 220 ARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEE-PIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEe-ccCceeeeccccccccceeccCcccccC-cceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 445566 6777555543 467899999764322 22233333 345566666788888766554 5999999998874
Q ss_pred c
Q 015301 264 S 264 (409)
Q Consensus 264 ~ 264 (409)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=159.66 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=191.7
Q ss_pred eEEEEeeecCCCceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccceEEEEEeCCCC
Q 015301 22 HVLSRYLPVNGPWKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWTITDTSLSPDQ 97 (409)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~ 97 (409)
..+|.+.....+.....-...|+|+.|+|. ..++|.|..+|.|.+||+..+... ........|..+++.+.|..+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 455665555555555667789999999994 567788889999999999877442 1122345678899999997654
Q ss_pred --cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC
Q 015301 98 --RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 98 --~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.-+++++.||.|..|+++.-.............. .+........+++++|.+ +-..+++|+.+|.|.--+-...
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 4499999999999998765443221111111110 011112234689999998 5567899999999887433222
Q ss_pred e--------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC-Ce
Q 015301 175 K--------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG-RY 245 (409)
Q Consensus 175 ~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 245 (409)
+ ....+..|.++|.++.++|-....+++++ |.+++||.-. ....++..+..+...+++++|||.. ..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCceE
Confidence 1 12345678999999999965556666666 9999999942 1556667777788889999999964 57
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
|+++..||.+.+||+...... ++...+-.. .......++++|
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~--------------------------------Pv~s~~~~~------~~l~~~~~s~~g 498 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEE--------------------------------PVLSQKVCS------PALTRVRWSPNG 498 (555)
T ss_pred EEEEcCCCceehhhhhccccC--------------------------------Ccccccccc------cccceeecCCCC
Confidence 788888999999999873322 122221111 222334577789
Q ss_pred CEEEEEeCCCeEEEEEccC
Q 015301 326 KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~ 344 (409)
+.|++|...|++++|++..
T Consensus 499 ~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cEEEEecCCCcEEEEEcCc
Confidence 9999999999999999953
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=166.92 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=200.9
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC----eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKN----WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
.|..|...|..++.++.. .+++|||.||+|++|+...- ..............++.++...+.+..+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 566789999999887654 99999999999999997643 1222333333345589999999999999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CC-CeEEEEEecCeEEEEECCCCeeeeEEc--CCCC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DG-QELVAAGSDNFIYVYDLQANKCSLRIP--AHKS 185 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~ 185 (409)
++.+++.............. +.......-|..-+|.. .+ ..++.+...+.|..||........+++ ...+
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri------~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRI------PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred EEEEccccccccceeeeeec------ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999874222211111111 11111111233334433 23 367888888999999998876655443 3457
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCC---CCeEEEEe--CCCcEEEee
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRD---GRYFISNG--KDQTTKLWD 259 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd 259 (409)
.|++++.+ +.+++++.|+..|.+.+||+| -..++..+ .++..++..+..+|- ....++++ ..+.|.+|+
T Consensus 1197 ~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1197 LVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 89999999 888999999999999999998 33333332 234467777776653 34455444 477899999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
+.++.+....-......... ...+.... -+.+. . ...++ .+...+.++.+|+.|..|+.
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls------------~~~Ps~~~---~kp~~--~---~~~~~-~~~~~~~~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILS------------YALPSNDA---RKPDS--L---AGISC-GVCEKNGFLLTGGSDMKIRK 1330 (1431)
T ss_pred cccCcceEEEEcCCCCcchh------------hhcccccC---CCCCc--c---cceee-ecccCCceeeecCCccceee
Confidence 99875544332110000000 00000000 00000 0 01111 12234678999999999999
Q ss_pred EEccCCceE-----------------------------EE-------------------e--------ccCCcceeeeEE
Q 015301 340 YDLVSGAQV-----------------------------AK-------------------L--------DFHNAPVRDCCW 363 (409)
Q Consensus 340 ~d~~~~~~~-----------------------------~~-------------------~--------~~~~~~v~~~~~ 363 (409)
||....+.. .. . ..|..+|+++++
T Consensus 1331 wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~ 1410 (1431)
T KOG1240|consen 1331 WDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMAT 1410 (1431)
T ss_pred ccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhh
Confidence 997543221 00 0 127788999988
Q ss_pred ecCcC-eEEeecCCCeEEEEe
Q 015301 364 HPIYP-MLISSSWDCNIVRWE 383 (409)
Q Consensus 364 s~~~~-~l~s~~~dg~i~iw~ 383 (409)
..... +|++++.||.|++|.
T Consensus 1411 ~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1411 LKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccCccEEEEecCCCeeeecC
Confidence 66544 899999999999994
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=155.76 Aligned_cols=289 Identities=14% Similarity=0.126 Sum_probs=209.0
Q ss_pred cceeeEEecCceeEeeccceE---EEEeeecCCCceeecCCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCC-----
Q 015301 3 VGREVNYSGRGRFSAADSCHV---LSRYLPVNGPWKVDGMNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKN----- 72 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~---~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~----- 72 (409)
+.||+...|.|.++++++... +|......+..+. ...+.|.|++|+|.++ .||++-.+ .+-|-+..-+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEV 479 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhh
Confidence 358999999999999988765 4554444443332 3456899999999775 34444332 2333332111
Q ss_pred ----------------------------eeee-eeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccc
Q 015301 73 ----------------------------WKIQ-KDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARE 120 (409)
Q Consensus 73 ----------------------------~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~ 120 (409)
.... .....-.|...|..+.|+..|.||++...+ ..|.|.++......
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence 0000 001112345589999999999999988643 47888988766544
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..+... .+.|.++.|+|...+|++++. ..|+|||+...+.+..+......|..++.+ +.|.-|
T Consensus 560 ~PF~ks---------------kG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnl 622 (733)
T KOG0650|consen 560 SPFRKS---------------KGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNL 622 (733)
T ss_pred Cchhhc---------------CCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence 322211 225999999999999998875 679999999988888887788899999999 888889
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+.|+.|+.+..+|+. ...++.+.+..|...+++++|++.-.+|++|+.||++.|+.-+-..
T Consensus 623 i~gs~d~k~~WfDld---lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~---------------- 683 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLD---LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN---------------- 683 (733)
T ss_pred EEecCCCeeEEEEcc---cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh----------------
Confidence 999999999999985 4667888889999999999999999999999999999998643211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
..+..+.-.++..+.+|... ....+....|+|...+|++++.||+|++|
T Consensus 684 ---------Dl~qnpliVPlK~L~gH~~~--~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 ---------DLLQNPLIVPLKRLRGHEKT--NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------hhhcCCceEeeeeccCceee--cccceEeecccCCCceEEecCCCceEEee
Confidence 11112223456777888743 12234556688889999999999999998
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-18 Score=151.44 Aligned_cols=291 Identities=26% Similarity=0.416 Sum_probs=213.9
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAI 108 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~ 108 (409)
.....+..|...|.+++|+|+++++++++. |+.+++|+...+..... ...|...|.+++|+|++. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 445678899999999999999998888885 99999999987534333 233677899999999998 5555589999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEEcCCCCCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDV 187 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v 187 (409)
+++||...+..... ....|.... ...|++++..+++++.|+.+++|+...... ...+..|...+
T Consensus 223 i~~wd~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 223 IRLWDLSTGKLLRS--------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred EEEEECCCCcEEee--------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 99997774433221 011222233 228999998888999999999999987664 44446789999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 264 (409)
.++.|. +++..+++++.|+.+.+||.+ ......... .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus 288 ~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 288 LSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999999 577778778889999999864 444444443 677788999994332455555 678899999988732
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE-EeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT-GSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~v~i~d~~ 343 (409)
.......... .....+++ ...+.. +..++.+.+|+..
T Consensus 363 ----------------------------------~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 363 ----------------------------------PLKTLEGHSN-------VLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred ----------------------------------eeEEecCCce-------EEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 0111111110 23344555 333333 6889999999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..........+...+....+++++..+++++.++.+++|+...
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8888777765547889999999999999999999999999987
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=158.50 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=175.3
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
..|...|..++|.|....|++++.||.|.+|+++. -+++.++.+|.++|.|+++. .++..+++|+.||+|+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIR 369 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceee
Confidence 34566799999999999999999999999999932 25677889999999999998 9999999999999999
Q ss_pred Eecccc------cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccc--ccccc
Q 015301 211 VWDRRC------FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD--WDYRW 282 (409)
Q Consensus 211 iwd~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~ 282 (409)
.|++.. ..........+.+|.+.++.+++++....|++++.||++++|+................+. .+...
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc
Confidence 996531 1112234566889999999999999999999999999999999876544111111111111 11000
Q ss_pred ----ccccccce----eccccCccceeeeecccceee-eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 283 ----MEYPSYAR----RLKHPHDQSLATYKGHSVLRT-LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 283 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
+....... .........+..+........ ....+.-+...|.+.+.+++-+|+.|+++|..+++++.....
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee
Confidence 00000000 000000111122211111000 001111223456678999999999999999999999999999
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|...++++++.|+|.+|++++.||.+++|.+...
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999999999999998653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-20 Score=144.94 Aligned_cols=201 Identities=22% Similarity=0.209 Sum_probs=153.8
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
..++|+.+|..+++++.||.+++|+..+...+.....|.+.|.++.|+ +++++|++.+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 679999999999999999999999999888888888899999999999 999999999999 89999976 443333
Q ss_pred eee--ccccceeEEEEcCCC---C--eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 226 VLM--GHLEGITFIDSRRDG---R--YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 226 ~~~--~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
... ........+.|+.++ . .++....-+.|+.||+......
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-------------------------------- 269 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-------------------------------- 269 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------------------
Confidence 332 223345667787766 2 2333344567777776542211
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCC
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
..++... .......+.+++.|++|+++|.|+.||.|-|++..+.+.++.. +.|...|+.+.|+||.+++++.+.|.
T Consensus 270 --~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 270 --NFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred --cccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 0000000 0011123457789999999999999999999999999887766 47999999999999999999999999
Q ss_pred eEEEEecCCC
Q 015301 378 NIVRWEIPGI 387 (409)
Q Consensus 378 ~i~iw~~~~~ 387 (409)
...+..+.-.
T Consensus 347 ~~~v~~l~vd 356 (398)
T KOG0771|consen 347 EAAVTKLAVD 356 (398)
T ss_pred ceeEEEEeec
Confidence 9999988763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-18 Score=143.71 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=161.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~ 116 (409)
+.+....++++|++++|++++ .++.|.+|+++....+...... .....+..++|+|++++|++++ .++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 446678899999999987664 5788999999733222211111 1222467899999999998876 488999999964
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeee-------EEcCCCCCeE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSL-------RIPAHKSDVN 188 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-------~~~~~~~~v~ 188 (409)
...... ..... .+...+..++++|+++++++++. ++.|.+||+.+...+. ... ......
T Consensus 112 ~g~~~~-~~~~~-----------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~ 178 (330)
T PRK11028 112 DGIPVA-PIQII-----------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPR 178 (330)
T ss_pred CCCCCC-ceeec-----------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCc
Confidence 321111 00000 00113677889999998876654 6999999997633221 112 234467
Q ss_pred EEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCCCeEEEEeC-CCcEEEeeC
Q 015301 189 TVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK-DQTTKLWDI 260 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 260 (409)
.++|+ +++++++++.. ++.|.+|++............+..+ ......+.++|++++++++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89999 88898888776 8999999985211111222222211 112335889999999988864 789999998
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i 339 (409)
..... ...+.++.... .......++|+|++|+++.. +++|.+
T Consensus 258 ~~~~~----------------------------------~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS----------------------------------VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC----------------------------------eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 01111111000 11224578999999998876 899999
Q ss_pred EEcc
Q 015301 340 YDLV 343 (409)
Q Consensus 340 ~d~~ 343 (409)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=165.74 Aligned_cols=281 Identities=15% Similarity=0.232 Sum_probs=207.7
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..|.||.++|+|+.|...|.++++|++|..++||..++..++. ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3678999999999999999999999999999999998876555 4678888999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE----c-CCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----P-AHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~-~~~~~v~ 188 (409)
+..+....+.. +|++.|++++|+|-. +.+.||++++||.+ ..++... . ....-+.
T Consensus 261 l~~~~pvsvLr---------------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLR---------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cCCCchHHHHh---------------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCccccccee
Confidence 99887654433 677789999999954 66789999999987 2211111 1 1234556
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+.|. .++.-+++++.|+.-..|..... ..+...+.-+..+.+ ..+.+++-.+-.+.+|++-+
T Consensus 321 s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~----- 384 (1113)
T KOG0644|consen 321 SILFE-NNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT----- 384 (1113)
T ss_pred eeecc-ccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeeccc-----
Confidence 66776 78888999999999988885311 111111122222212 24556666778899999877
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+...+...+|... .+.+.++|- .+...+++.||...|||+-.|.
T Consensus 385 -----------------------------g~l~H~l~ghsd~------~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 385 -----------------------------GQLLHNLMGHSDE------VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -----------------------------chhhhhhcccccc------eeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 3445555555533 233345553 3556678899999999999998
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+++...-....+.+.+||+||..++....-|.++|.....+.
T Consensus 430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 877665445667788999999998888778999998765443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=149.40 Aligned_cols=209 Identities=18% Similarity=0.237 Sum_probs=162.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
..|+.++.||.+.+.+-... + ......|.+.+.+-.|+|||.-|++++.||.|++|.-...-.......
T Consensus 76 d~~~i~s~DGkf~il~k~~r--V--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~------- 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--V--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN------- 144 (737)
T ss_pred ceEEEEcCCceEEEecccch--h--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-------
Confidence 46888889999998875432 2 223456777999999999999999999999999998654332211111
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
..+|+|++|.|+.+.++.+. .+.+.|=-+.....+...+.|.+-|.++.|+ +..+++++|++|-..++|
T Consensus 145 ---------~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 145 ---------EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIW 213 (737)
T ss_pred ---------CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEee
Confidence 12699999999888776654 4678887777776777789999999999999 889999999999999999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
|- .+..+.....|..+|++++|+|+ +.++.++.. ++++=..+
T Consensus 214 D~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~------------------------------- 255 (737)
T KOG1524|consen 214 DA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR------------------------------- 255 (737)
T ss_pred cc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCC-------------------------------
Confidence 94 67888888889999999999999 556655543 34421111
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
...+++++||+||..+++|+..|.+.+-.
T Consensus 256 --------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 --------------------VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred --------------------ccceEEEEEcCCCceeeccccCceEEEee
Confidence 25678889999999999999999876543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-17 Score=129.69 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=167.4
Q ss_pred eeeEEecCceeEeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCeeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~ 80 (409)
....|..|..++..+.......+... ..........-.|.-+-||. .++|..+.+ +.+++.++..+..+....
T Consensus 9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~- 85 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF- 85 (391)
T ss_pred eeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-
Confidence 34556677777776665544333222 11111222234466667764 566666554 459999998775554432
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
... .|.++.++. +.|+++-. ..|+|||+.+.+.......... +..++.++.+++.+.+++.-
T Consensus 86 fpt---~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~------------n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 86 FPT---SILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPP------------NPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred cCC---ceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCC------------CccceEeeccCCCCceEEec
Confidence 333 699999874 45666654 4499999998876544333221 22357777777777788864
Q ss_pred Ee--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe-EEEecccccccCCceeeeeeccc--ccee
Q 015301 161 GS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGRANGVLMGHL--EGIT 235 (409)
Q Consensus 161 ~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~v~ 235 (409)
+. .|.|.+||..+-+++..+..|.+++.+++|+ ++|.+||+++..|+ ||++.+ ..++.+..++... ..|.
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v----~~G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSV----PEGQKLYEFRRGTYPVSIY 222 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEc----CCccEeeeeeCCceeeEEE
Confidence 43 6899999999999999999999999999999 99999999999998 689996 4777777776543 4678
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+++|+|++++|.+.+..++|.+|.+....
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999999998755
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=157.54 Aligned_cols=235 Identities=19% Similarity=0.203 Sum_probs=161.8
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSAD 137 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (409)
+..|.+||.+... .... ..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++........
T Consensus 183 ~~~i~i~d~dg~~-~~~l---t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV---NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceEe---ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 2222 2344579999999999999988654 47999999876543222111
Q ss_pred CCCcceeeEEEEEcCCCCeEEEEE-ecCeE--EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEec
Q 015301 138 GDEDEFGIFSVKFSTDGQELVAAG-SDNFI--YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWD 213 (409)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i--~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd 213 (409)
+ ....++|+|||+.|+.+. .+|.+ ++||+.+++. ..+..+...+....|+ |+++.|+.+ ..+|...||+
T Consensus 248 --g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 248 --G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 1 134689999999888765 46754 4557766654 4556677778899999 788766654 4678889998
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
+.. .+.....+ .+.. ....|+|+|++|+..+.++ +.+||+.+....
T Consensus 321 ~~~---~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~--------------------------- 366 (429)
T PRK01742 321 MSA---SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE--------------------------- 366 (429)
T ss_pred EEC---CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---------------------------
Confidence 652 12222222 3333 4578999999998887765 666898763211
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc--CCceEEEeccCCcceeeeEEecC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV--SGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.+.... ...++.|+|||++|+.++.++.+.+|++. +++.+..+..|.+.+...+|+|-
T Consensus 367 --------~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 --------VLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------EecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 111000 01356799999999999999988888763 57888889888888999999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=136.48 Aligned_cols=209 Identities=17% Similarity=0.250 Sum_probs=160.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee---cccccceEEEEEeCC--CCcEEEEEecCCEEEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE---TKALRWTITDTSLSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w 112 (409)
.+-+.|.|+.|.|++..+|+-. |..|.+|+++.+..+..... ..++....++-+|+| +++.+++.+ |++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence 4567999999999999999876 77899999988755322111 122445688889999 688888665 8999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~ 190 (409)
|+++....... . ..|...|..+.|+|+.+ +|++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus 199 D~RT~~~~~sI--~------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 199 DLRTMKKNNSI--E------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred Eccchhhhcch--h------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 99977653222 2 23455799999999765 578889999999999975 45788899999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccc-------------------------cCCceeeeeeccccceeEEEEcCC-CC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFI-------------------------SKGRANGVLMGHLEGITFIDSRRD-GR 244 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~~~-~~ 244 (409)
.|+|....++++|+.|..|.+|...... -....+..+..|.+.|.+++|+.- .-
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9998889999999999999999753110 011234456779999999999874 45
Q ss_pred eEEEEeCCCcEEEeeCCC
Q 015301 245 YFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~ 262 (409)
.|++-+.||++.|=.+..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 678889999998876643
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=142.56 Aligned_cols=263 Identities=13% Similarity=0.114 Sum_probs=186.1
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|.+.|+++.|+.++++|++|+.|..+++|+++..-.....+. +......|...|.|++|......+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP--------I~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP--------IGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC--------ceeccCccccceEEEEEccCCeeEecC
Confidence 456888999999999999999999999999999975433222211 111223556689999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 161 GSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
..+++|...|+++.+.+..+.. ..+.|..+..+ |..+.|++.+.++.|.+||.|.......+.. ..........+.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAE 201 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeee
Confidence 9999999999999988776642 33589999999 5688999999999999999884322222222 223345567788
Q ss_pred EcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 239 SRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 239 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
|+|. ..+|++.+..+-+-+||.+....... .+.+............
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---------------------------------~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVY---------------------------------QRSMFKGLPQENTEWM 248 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHH---------------------------------hhhccccCcccchhhh
Confidence 9985 45778888888999999988443221 1111111111111123
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCce-EEEeccCC-------cceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHN-------APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+..|+|+|..|++--....-.+||+.+.++ +..+. |. ..+.+++|..|. .+++|+.+-.|++|.++...
T Consensus 249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred heeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 446888898888776666667888876443 33333 32 256778887654 49999999999999997543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=141.29 Aligned_cols=273 Identities=13% Similarity=0.216 Sum_probs=190.7
Q ss_pred ceEEEEEeCCCCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 86 WTITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 86 ~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
.+|..+.|.++.. .|++|+.|..|++|.+......... ..+.+......|...|+++.|+|+|..|++|+.+|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3799999998776 9999999999999999766543211 23445666678888999999999999999999999
Q ss_pred eEEEEECC--------C--------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 165 FIYVYDLQ--------A--------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 165 ~i~v~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
.|.+|-.. + ......+.+|...|..++|+ ++++++++++.|..+++||++ .+.....+.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~ 162 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAILD 162 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeecc
Confidence 99999765 2 12234567899999999999 899999999999999999976 889999999
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
.|...+..++|.|-++++++-+.|...+.+.+............. ..........+...+.+...
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-------------m~~~~~~~~e~~s~rLfhDe-- 227 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-------------MPAKAFNEREGKSTRLFHDE-- 227 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-------------eeecccCCCCcceeeeeecC--
Confidence 999999999999999999999999877777765432221111000 00000000111112222111
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeC----CC-----eEEEEEccC-CceEEEeccCCcceeeeEEecC------------
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSS----DN-----SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPI------------ 366 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~----dg-----~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~------------ 366 (409)
+.......++|+|+|.+|++... .+ ..++|+-.. .+++..+.....++..+.|+|-
T Consensus 228 --TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 228 --TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred --chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 12233445678999999998653 22 345665443 2456666666666666666551
Q ss_pred ------cCeEEeecCCCeEEEEecCCC
Q 015301 367 ------YPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 367 ------~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+-.++.++ ...|++||.+..
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccc
Confidence 12344554 458999998763
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=128.99 Aligned_cols=258 Identities=14% Similarity=0.246 Sum_probs=174.5
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.+-+|+|.+++|++|..+|.|.+..+.+-........ +....-....|.++++.++|. ..+|++|+ ||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-----gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-----GKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCC-----CCcceeeccccCCCeeeeeee--hhheeecc-CceE
Confidence 466678999999999999999999999875432211110 000111125788899999997 34566665 5999
Q ss_pred EEEECCCCee------eeE--EcCCC-----CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 167 YVYDLQANKC------SLR--IPAHK-----SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 167 ~v~d~~~~~~------~~~--~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
+-|..+.... +.. .+.|. -.|++|...|..+.+| .++.|+.++-||+ +.++....+++|.+.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dl----E~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDL----EDGRIQREYRGHTDY 158 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEe----cCCEEEEEEcCCcce
Confidence 9998754322 111 12222 3578888885555555 4458999999996 489999999999999
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.++.--.....+++|++||++++||+++.++......... ...++.+- -
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-------------------------~~~lRp~~-----g 208 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-------------------------PNLLRPDW-----G 208 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-------------------------hhhcCccc-----C
Confidence 99999855556799999999999999999655433321100 00011110 0
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccCCC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLP 393 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 393 (409)
. |-.+..-+..+|++|+. ..+.+|++++.++...+. -..+|..+.|.. ..+++++.-+.|.-|.+....+...|
T Consensus 209 ~--wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 209 K--WIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred c--eeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeeccEEEEecc
Confidence 1 11233445678888865 468999999999888876 456788888854 46777887788999988765554433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=133.19 Aligned_cols=255 Identities=13% Similarity=0.123 Sum_probs=177.0
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+|+|.+|++|...+|++.....|.||.......-...... ..|...|+.++|+|..+.|++++.|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl------------s~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL------------SEHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh------------hhhCcceeEEeecCCCCceeEccCCCC
Confidence 38999999999999999999999999998877632222222 245557999999999999999999999
Q ss_pred EEEEEC-CCC--eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 166 IYVYDL-QAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 166 i~v~d~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
-++|.. ..+ ++...+..++...+++.|+ |.++.|++|+....|.||-+.....-......-+.+...|.+++|+|+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 999998 333 3444566789999999999 899999999999999999864211111122334456788999999999
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
+-+|++|+.|+..+++..--.... .......|. -..+-+..+..+.. .-..+....|+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vd----ekpap~pWg------------sk~PFG~lm~E~~~------~ggwvh~v~fs 215 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVD----EKPAPTPWG------------SKMPFGQLMSEASS------SGGWVHGVLFS 215 (361)
T ss_pred cceecccccCcceeEEEEeeeccc----cCCCCCCCc------------cCCcHHHHHHhhcc------CCCceeeeEeC
Confidence 999999999999999864210000 000000010 00011222222221 11345667899
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+. .++.++.|
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 999999999999999999987664 344444334677777776543 34444444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=144.09 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=145.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
.+++|+++|..|++++.||++|||+..+...+. ....|...|.++.|+|||+.|++.+.| ..+||++.++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999999999999999999987654433 345566689999999999999999999 8999999998443332
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCC---CeEEEE--EecCeEEEEECCCCee-----eeEEcCCCCCeEEEEEe
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDG---QELVAA--GSDNFIYVYDLQANKC-----SLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~--~~d~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~ 193 (409)
..... ......+.|+.++ .+.+.+ ...+.|..||+...+. ..+.......|++++.+
T Consensus 224 t~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 224 TPFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred CCccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 22111 1235667777766 333322 2345566666533221 11111234579999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCcee-eeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRAN-GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+|++++.|+.||.|.|++.. ..+.. ..-+.|..-|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus 291 -~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 -DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999964 33333 34467999999999999999999999999888887654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=132.81 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=180.5
Q ss_pred eeEEecCceeEee--ccceEEEEeeecCCCceee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 6 EVNYSGRGRFSAA--DSCHVLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 6 ~~~~s~dg~~~~~--~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
++.|-.+++.... .+....|.+........+. .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+.-+..
T Consensus 19 s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i----- 92 (323)
T KOG0322|consen 19 SVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI----- 92 (323)
T ss_pred ehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE-----
Confidence 4555555654333 2234556666666666777 67789999999997 5688888999999999987533222
Q ss_pred cccceEEEEEeCCCCcEEEEEecCC-EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCC--eEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICA-IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQ--ELV 158 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~ 158 (409)
|.-.++++.|.+.. +...+... ..-.++-+...............-....+......+.+.+..+.- .+. +++
T Consensus 93 -~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 93 -HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred -eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 22245555555421 11111111 111111111000000000000000000111112334577766433 233 456
Q ss_pred EEEecCeEEEEECCCCee----------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 159 AAGSDNFIYVYDLQANKC----------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+|..+|.+.+||+.++.. ......|..+|.++.|. +.-+.=++|+.+..+..|.+..............
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 777799999999998733 33345799999999998 5555567788888899998763322223333333
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
-..-.|..+..-||++.+++++.|++|++|+-++ ..++..++-|.
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt----------------------------------l~pLAVLkyHs- 293 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT----------------------------------LNPLAVLKYHS- 293 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEecc----------------------------------CCchhhhhhhh-
Confidence 3456788999999999999999999999999998 46677777777
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
..+.+++|+|+..++|+++.|++|.+|++
T Consensus 294 -----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 -----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 44567789999999999999999999986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=143.61 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=180.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-------CCcEEEEEecCCEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-------DQRFLVYASICAIVN 110 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~ 110 (409)
-|...|.|+.|+.+...+.+++++..+.-|++.+. .......... .-.+.+-.-+ ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~d--f~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDD--FVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcc--cCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 57777889999988887777665554445555433 1111110100 0111111111 235788889999998
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+.+-...-. ... ..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|-...++.....+|.|+
T Consensus 89 il~k~~rVE----~sv------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 89 ILNKSARVE----RSI------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred Eecccchhh----hhh------------hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 876433211 111 245668999999999999999999999999994 555555555567899999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|.|...+.+++.+ +.+.|=.+. ....+...+.|.+-|.++.|++..+++++|++|-..++||-..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-------- 217 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-------- 217 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC--------
Confidence 99966666666654 455555542 4555667889999999999999999999999999999999653
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
..+..-..|. ..+.+++|.|+ +.++.++.+ +++ -
T Consensus 218 ---------------------------~~Lf~S~~~e------y~ITSva~npd-~~~~v~S~n-t~R-----------~ 251 (737)
T KOG1524|consen 218 ---------------------------ANLFTSAAEE------YAITSVAFNPE-KDYLLWSYN-TAR-----------F 251 (737)
T ss_pred ---------------------------cccccCChhc------cceeeeeeccc-cceeeeeee-eee-----------e
Confidence 3333333444 34567789898 666666543 233 1
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
-+...+.|..++||+||..++.|+..|.+.+
T Consensus 252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 1234578999999999999999998888765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-16 Score=134.67 Aligned_cols=309 Identities=15% Similarity=0.113 Sum_probs=182.9
Q ss_pred CEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+++ ++-..++.|.|.|.++.+.+........ .-..+.|+||++++.+++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 444 4556689999999998866665443322 33457899999999999999999999999988544433222
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-------CCCeEEEEEeCCCCcEEEEe
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~ 203 (409)
....+++++||+++++++. .+.+.++|.++.++++.++.. ...+..+..+|....++++.
T Consensus 79 ------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 79 ------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp ------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 4678999999999988764 799999999999998887532 34677888884545566666
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccc-----
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYD----- 277 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~----- 277 (409)
-+.+.|.+.|... ...................|+|++++++++ ..++.|.++|..+...............
T Consensus 147 kd~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 147 KDTGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp TTTTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred ccCCeEEEEEecc---ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 6668888888642 122222223334556788999999987665 4567899999887654433221111000
Q ss_pred ---------cccccccc------cccc-eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE----eCCCeE
Q 015301 278 ---------WDYRWMEY------PSYA-RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG----SSDNSV 337 (409)
Q Consensus 278 ---------~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~v 337 (409)
|....... .... ........+.++.+...... .-+..+|+++++.+. ...+.|
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT-E
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCceE
Confidence 10000000 0000 00111222333333332211 233568999999998 445899
Q ss_pred EEEEccCCceEEEeccC-CcceeeeEEecCcCeEEeec--CCCeEEEEecCCCccc
Q 015301 338 YIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSS--WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~ 390 (409)
.++|.++.+.+.++... ...+..+.|+++|+.+..+. .+|.|.+||..+.++.
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 99999999888887532 23589999999999555443 3447999999887654
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=141.77 Aligned_cols=252 Identities=16% Similarity=0.172 Sum_probs=171.8
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-----cCCCCeEEEEEe
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-----STDGQELVAAGS 162 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~ 162 (409)
+....++-.|.+|+..- ...+.+|+...+........... +... ...|-+| .|.+--+++|-.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~-----y~gt------~P~cHdfn~~~a~~~g~dllIGf~ 193 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKRE-----YKGT------SPTCHDFNSFTATPKGLDLLIGFT 193 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhc-----ccCC------CCceecccccccCCCCcceEEeec
Confidence 44445555677776543 35688888875322111110000 1100 1333344 346667888888
Q ss_pred cCeEEEEECCCCeeeeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc-------------------
Q 015301 163 DNFIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS------------------- 219 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------- 219 (409)
-|.|.+.|....+..+.+ ......|+++.|-|.+...++++-.+|.+++||......
T Consensus 194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 899999987663322212 123478999999988888899999999999997531000
Q ss_pred -----CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 220 -----KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 220 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
...++..+.--.+.|...+|+|||++|++.+.||.++|||..+.+
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e------------------------------ 323 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE------------------------------ 323 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH------------------------------
Confidence 001122222234578899999999999999999999999998732
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEec---------
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP--------- 365 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~--------- 365 (409)
.+..++. ......+++|||||+||++|++|--|.||.+..++.+..-++|.+.|+.++|.|
T Consensus 324 ----Llg~mkS------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~ 393 (636)
T KOG2394|consen 324 ----LLGVMKS------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWN 393 (636)
T ss_pred ----HHHHHHh------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccc
Confidence 1111211 123345668999999999999999999999999999999999999999999982
Q ss_pred ----------------------C----c-------------CeEEeecCCCeEEEEecCCCcccC
Q 015301 366 ----------------------I----Y-------------PMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 366 ----------------------~----~-------------~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+ + -.+.+.+.|-.+.+||+......+
T Consensus 394 ~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 394 NFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 1 146788899999999998755443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=159.25 Aligned_cols=239 Identities=18% Similarity=0.316 Sum_probs=168.8
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
.+|...|+|+.|...|.++++|+.|..++||.++++.++....+|.+.|+.++.+ .+..++++++.|..|++|.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~--- 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLP--- 262 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc-hhhhhhhhcccCceEEEEecC---
Confidence 4788889999999999999999999999999999999999999999999999998 888899999999999999965
Q ss_pred cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc----ccc-cceecc
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME----YPS-YARRLK 293 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~ 293 (409)
.+.++..+.+|.+.|++++|+|-. +.+.||++++||.+- ...... .....+....+. +.. ......
T Consensus 263 -~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~---prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 263 -DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYV---PRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred -CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccC---CCCCCcccccceeeeecccccccccc
Confidence 889999999999999999999954 778899999999882 111100 000000000000 000 000000
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 372 (409)
..........+...........+|....+.-..+.+++-.+-.+.+|++.+|...+.+.+|...+..+.++|-+. ...+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 000000000000000000011112111111124666677788899999999999999999999999999999776 5668
Q ss_pred ecCCCeEEEEecCCCccc
Q 015301 373 SSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~~~ 390 (409)
++.||...|||+..+...
T Consensus 414 ag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ccCCCceEeeecccCCcc
Confidence 999999999999876543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=137.85 Aligned_cols=293 Identities=18% Similarity=0.261 Sum_probs=200.6
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
+|...-+.|..+|||+|+ |||..--.|++||+..- .+.....+ ....|.-.-.+.|-..++.-..|..|.+-.-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecc--cccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 678888999999999986 67777889999999764 22221111 222455555566666666666777776543221
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
... ...++. .-..++++.-..-|++++....|+-++++.|..+..+....+.++++..+ +.
T Consensus 126 ~hy--~~RIP~----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~ 186 (703)
T KOG2321|consen 126 RHY--RTRIPK----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-EE 186 (703)
T ss_pred eee--eeecCc----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-Cc
Confidence 110 011111 23456666544445566667789999999999999998888999999999 77
Q ss_pred CcEEEEeeCCCeEEEecccccccCCc--eeeeeecccc-----ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGR--ANGVLMGHLE-----GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
..+|++|+.+|.|..||.|....-+. ....+..|.+ .|+++.|+.+|-.+++|..+|.+.|||++...+
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---- 262 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---- 262 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----
Confidence 88999999999999999873211111 1111223333 499999999999999999999999999998332
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
...+.|.....+....|... .+++.|++. ....++|||-.+|+...
T Consensus 263 -------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 263 -------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred -------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhcccccCCcee
Confidence 12223332223333333222 123444443 45679999999999998
Q ss_pred EeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 350 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 350 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
.+.. ...++.+|+-|++-+++++-.++.+..|=++...+.|
T Consensus 309 siEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 309 SIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred eccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 8874 4569999999999999999999999888887766543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=132.91 Aligned_cols=307 Identities=17% Similarity=0.278 Sum_probs=198.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----eeeeeecc----------cccceEEEEEeCCCC--cEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK----IQKDIETK----------ALRWTITDTSLSPDQ--RFLVYA 103 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~----------~~~~~v~~~~~s~~~--~~l~~~ 103 (409)
..-|.++.|...|.+||||..+|.|.++.-+.... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46689999999999999999999999997554321 11111110 113468999998865 456677
Q ss_pred ecCCEEEEEEcCCCcccc------------------ccceeceeeeee---eecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 104 SICAIVNIVDVGSSARES------------------LANVTEIHKGLD---FSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~------------------~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
+.|.+|++|.+....... ..........+. -......|..-|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999987654332 000000000011 1112347888999999999999888874
Q ss_pred cCeEEEEECCCCeeeeE---EcCC-----CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc------------CCc
Q 015301 163 DNFIYVYDLQANKCSLR---IPAH-----KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS------------KGR 222 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~---~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~ 222 (409)
|=.|.+|+++-...... ++.+ +.-|++..|+|...++++-.+..|+|++.|+|...- .+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 77899999864332222 2222 345889999988889999999999999999983110 011
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
....+.+--..|..+.|+++|+++++-.. -+|++||+... .+++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme---------------------------------~~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME---------------------------------AKPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc---------------------------------CCcceE
Confidence 11112223346788999999999997654 47999999653 233444
Q ss_pred eecccceee---------eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-EEe-------------------c-
Q 015301 303 YKGHSVLRT---------LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-AKL-------------------D- 352 (409)
Q Consensus 303 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~-------------------~- 352 (409)
+.-|..... .+-..|..+|+.++.++++|+....+++|++..|... .++ .
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 444332211 1112345578888999999999999999996544210 000 0
Q ss_pred c-------------CCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 353 F-------------HNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 353 ~-------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
+ ....+...+|+|..+.+|.+..+ .++++
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 0 12245567899988888877654 55554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=145.14 Aligned_cols=270 Identities=17% Similarity=0.248 Sum_probs=203.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
.-.-+.+.|+.+|+.|+.|+..|.+-.+|..++.... .+.... .|.++.|..+.+++|++- ...++|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-Ei~v~E---tv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-EINVME---TVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee-eeehhh---hhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 3445788999999999999999999999999884433 333333 699999999988888775 57899999877665
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..+.... +|..+.|.|..-+|++++..|.+.--|+.+|+.+..+....+.+..|+-+ |-+..
T Consensus 204 HClk~~~-----------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaV 265 (545)
T KOG1272|consen 204 HCLKRHI-----------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAV 265 (545)
T ss_pred eehhhcC-----------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccce
Confidence 4444322 58899999999999999999999999999999999998888899999999 67778
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+-+|...|+|.+|... ...++..+..|.++|.++++.++|+++++.+.|..++|||+++....
T Consensus 266 ih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------------- 328 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------------- 328 (545)
T ss_pred EEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-------------
Confidence 9999999999999954 77788888899999999999999999999999999999999984321
Q ss_pred cccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-CCc--eEEEecc--
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SGA--QVAKLDF-- 353 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-~~~--~~~~~~~-- 353 (409)
.++.. +. ...+++|. ..+||.+ ....|.||.-. .+. .-..+-.
T Consensus 329 ---------------------~t~~tp~~--------a~~ls~Sq-kglLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 329 ---------------------HTYRTPHP--------ASNLSLSQ-KGLLALS-YGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred ---------------------ceeecCCC--------cccccccc-ccceeee-cCCeeeeehhhhcCCCCCCcchhhhc
Confidence 22111 11 11223443 2344444 44568999532 211 1111111
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
..++|.++.|.|-...|-.|..-|.-.
T Consensus 378 ~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cCcccccceeccHHHeeeccccCCcee
Confidence 245899999999877776665555433
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-16 Score=123.00 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=152.1
Q ss_pred eeeEEecCce-eEeeccceEEEEeee-cCCCceeec-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeee-----
Q 015301 5 REVNYSGRGR-FSAADSCHVLSRYLP-VNGPWKVDG-MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI----- 75 (409)
Q Consensus 5 ~~~~~s~dg~-~~~~~~~~~~~~~~~-~~~~~~l~~-h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~----- 75 (409)
|-++|.+--. |..+...+.+..+-. ...+..|+. -...|+|++|-|.+ +-|+.|+..| |.+|..+.....
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR 180 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc
Confidence 5567776322 222233333333322 234445543 34689999999964 5688888766 999997643221
Q ss_pred ------eeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 76 ------QKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 76 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.+.....+| .+|++|.|.+||..|++++ .+..|.|||.+++......... .+.+.-+
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g---------------lgg~slL 244 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG---------------LGGFSLL 244 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC---------------CCceeeE
Confidence 123344455 4899999999999999987 4678999999998876555211 1258889
Q ss_pred EEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce-----
Q 015301 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA----- 223 (409)
Q Consensus 149 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 223 (409)
.||||+.+|++++-|+..++|+..............+.|...+|+ |.|.+|+.... |.-++|.+....+....
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs-pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS-PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec-CCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 999999999999999999999655443333333345699999999 66665544332 33344443210100000
Q ss_pred ------eeee---------eccccceeEEEEcCCCCeEEEEeCCC--------cEEEeeCCC
Q 015301 224 ------NGVL---------MGHLEGITFIDSRRDGRYFISNGKDQ--------TTKLWDIRK 262 (409)
Q Consensus 224 ------~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~ 262 (409)
+..+ .--.+.+.+++|.|.|.+|++.-..+ .|.+||.+.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 0000 01246788999999999999876544 366677665
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=125.20 Aligned_cols=317 Identities=12% Similarity=0.113 Sum_probs=190.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~ 118 (409)
+..+..++|++.-..+|++..|-.|++|+-... .... +... ....|++++|-|.+ +.|++|+ .+-|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~-Lks~-sQrnvtclawRPlsaselavgC-r~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK-LKSV-SQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce-ecch-hhcceeEEEeccCCcceeeeee-cceeEEEEcCccc
Confidence 345778999997777899999999999997763 2222 2222 23379999999964 5566666 4568899876432
Q ss_pred cccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 119 RESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
.... ......+....+. ..+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.|+ |+
T Consensus 174 n~~r~~~~~s~~~~qvl~--~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-Pd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQ--DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-PD 249 (445)
T ss_pred ccccccccccccchhhee--CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-CC
Confidence 2111 1111111111111 1233 57999999999999998876 6789999999988766554566788999999 89
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+.+|++++-|+..++|... ....... .....+.|...+|+|+|++|+..+. |.-++|.+.-......... ..
T Consensus 250 gd~lfaAt~davfrlw~e~---q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~-~~-- 321 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQEN---QSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR-PQ-- 321 (445)
T ss_pred CCEEEEecccceeeeehhc---ccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC-cc--
Confidence 9999999999999999642 1222222 2233458999999999998766553 3455666543222111110 00
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC--------eEEEEEccCCceE
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--------SVYIYDLVSGAQV 348 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~v~i~d~~~~~~~ 348 (409)
.....+...+-..+....+ ...+.....+++++|.|.+||+.-..+ .|.+||.+..-.+
T Consensus 322 ----------~~k~~lliaDL~e~ti~ag---~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 322 ----------SIKRVLLIADLQEVTICAG---QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred ----------cceeeeeeccchhhhhhcC---cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 0000000000011111111 112223445678999999999976543 3667776554333
Q ss_pred EEec-c--CCcceeeeEEec---CcCeEEeecCCCeEEEEecC
Q 015301 349 AKLD-F--HNAPVRDCCWHP---IYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 349 ~~~~-~--~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~ 385 (409)
.-.. + ....-..++|+| ++++|..+=..|.+.-|++.
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2221 1 111244566665 34456555556777777663
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=145.97 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=187.4
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecC---CCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe-e
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGM---NSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNW-K 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h---~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~-~ 74 (409)
.+.+.|+|=...+++... ..+|++-.....-.+..+ ...|+.+.+-. |..++++|+.||.|+||+--... .
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 566777776655555442 234444333322222222 35688888854 45689999999999999843221 1
Q ss_pred eeee----eecc----cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE
Q 015301 75 IQKD----IETK----ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146 (409)
Q Consensus 75 ~~~~----~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (409)
..+. .... +..+.-.-+.|.....+|++++.-..|+|||............. ....|+
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--------------s~t~vT 1212 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--------------SSTLVT 1212 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--------------CCccce
Confidence 1111 1111 11111234577777777777777899999999876643322211 122366
Q ss_pred EEEEcC-CCCeEEEEEecCeEEEEECCCCe---eeeEEcCCCCC--eEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 147 SVKFST-DGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSD--VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 147 ~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
++.-+. .|+.+++|..||.|++||.+... .+...+.|+.. |..+.+.+..-..|++|+.||.|++||+|.. .
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~ 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--S 1290 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC--c
Confidence 665443 57899999999999999987543 45566788887 9999998423335999999999999999942 2
Q ss_pred Cceeeeeeccc--c-ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 221 GRANGVLMGHL--E-GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 221 ~~~~~~~~~~~--~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
......+..|- + ..+++..++....+++|+. +.|+||++.....
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-------------------------------- 1337 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-------------------------------- 1337 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh--------------------------------
Confidence 22223333333 3 5899999999999999988 8999999876322
Q ss_pred cceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 298 QSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..++.+.. .........+++|+|..-++|+|+.|..|.||.....+
T Consensus 1338 ---~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 ---NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ---cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11111110 01111223567899989999999999999999876543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=138.55 Aligned_cols=236 Identities=17% Similarity=0.182 Sum_probs=156.6
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.... ..... +...+...+|+|||+.|+..+. +..|.+|++.+++.........
T Consensus 179 ~~l~~~d~dg~~~-~~lt~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCC-EEeec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 3688998876532 22222 2347899999999999987642 4579999998775433322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEEE-ecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CCeEEEecc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAG-SDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDR 214 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~ 214 (409)
.+...+|+|||+.|+... .+| .|++||+++++... +..+...+....|+ |+++.|+..+. ++...+|.+
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEE
Confidence 244689999999888653 344 59999998887554 44445567889999 78887766654 455556643
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
. ...+. ...+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 317 d--~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--------------------------- 366 (429)
T PRK03629 317 N--INGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------------- 366 (429)
T ss_pred E--CCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------
Confidence 2 11222 23333344455678899999998876653 357888886632
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe---EEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS---VYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
...+.... ...++.|+|||++|+.++.++. ++++++ +++....+.+|.+.+...+|+|
T Consensus 367 --------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 367 --------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 11111100 1125679999999999988764 677777 5666777888888999999997
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-16 Score=117.84 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=177.9
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc--eEEEEEeCCCCcEEEE-EecC------CEEEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW--TITDTSLSPDQRFLVY-ASIC------AIVNIVD 113 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-~~~d------g~i~~w~ 113 (409)
...++|+.|...+++|.++| .+||+.+--.+.. ....+.+ .+..|-| ..++|+. |+.+ ..+.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999998887 9999987521111 1111111 2222333 2345553 3322 4799999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEEcCC--CCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAH--KSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~--~~~v~~~ 190 (409)
-........... ..+|.++.+.++ .|++.- .+.|+||... +.+.+..+..- .....++
T Consensus 82 D~k~~~i~el~f----------------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 82 DLKERCIIELSF----------------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred cccCcEEEEEEe----------------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 433333222221 226899999765 455553 6789999997 55556555432 2333333
Q ss_pred EEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-EEEeeCCCCccccc
Q 015301 191 CFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TKLWDIRKMSSNTT 268 (409)
Q Consensus 191 ~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 268 (409)
+-. .+..+|+. |-.-|.|+|-|+.. ........+.+|...|.+++.+.+|..+|+++..|+ |+|||..+
T Consensus 143 ~~~-~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~------ 213 (346)
T KOG2111|consen 143 CPT-SNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED------ 213 (346)
T ss_pred cCC-CCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC------
Confidence 332 33344444 44679999999862 122245778899999999999999999999999886 89999988
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-- 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-- 346 (409)
+..+..++... ....+++++|||+..+||+++..|+++||.++...
T Consensus 214 ----------------------------g~~l~E~RRG~----d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 214 ----------------------------GTLLQELRRGV----DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred ----------------------------CcEeeeeecCC----chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCC
Confidence 34444443322 12456788999999999999999999999986532
Q ss_pred -e---------------------EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 -Q---------------------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 -~---------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
. +..++-..++..-++|-.+.+.++..+.||.-+-+.+..
T Consensus 262 ~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 262 EDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDP 323 (346)
T ss_pred ccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecc
Confidence 1 111122344555567766656666667788776665543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=139.71 Aligned_cols=244 Identities=16% Similarity=0.198 Sum_probs=165.4
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 155 (409)
..++.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+..... . .+|...|.++.|-| +.+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~------------TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--S------------TGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--e------------cccccceeEEeeeccCCCe
Confidence 3456789999999999999999999999999999999754432221 1 26677899999999 567
Q ss_pred eEEEEEecCeEEEEECCCC----------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc---
Q 015301 156 ELVAAGSDNFIYVYDLQAN----------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR--- 222 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--- 222 (409)
.+++|..|..|+++|+... +....+..|...|..++-.|...+.+.++++||+++-+|+|....-..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 8899999999999999742 234445789999999999966669999999999999999984211110
Q ss_pred ee---eeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 223 AN---GVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 223 ~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
+. ..+....-...++..+|. ..+|++|+.|-..++||.+............. ..+. ....
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~----------~~pp------~~~~ 252 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN----------TCPP------KDCR 252 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc----------CCCC------cccc
Confidence 11 111112234567888885 56889999999999999654222111100000 0000 0001
Q ss_pred ceeeeec-c-----cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 299 SLATYKG-H-----SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 299 ~~~~~~~-~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++..|.. | ........++.-++|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1111111 1 011233345667789999988888777778999999888765443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=127.97 Aligned_cols=172 Identities=12% Similarity=0.165 Sum_probs=128.5
Q ss_pred CCCceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----
Q 015301 31 NGPWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS---- 104 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---- 104 (409)
+....+++|...++.+.|.. ....+.+|+.||+|++||+....+............+-.+++..-.++.+++|.
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 34568889999999999976 456789999999999999998765554433332224567777776778888875
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee---eeEE
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC---SLRI 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~ 180 (409)
.+-.|.+||++..+.. ..... +.|...|++++|+| +.+.|++|+.||-|.++|++.... +...
T Consensus 141 s~A~v~lwDvR~~qq~-l~~~~------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQL-LRQLN------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred CceEEEEEEeccccch-hhhhh------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 4668999999887653 11122 23455799999999 567899999999999999975422 2222
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
-.|...|.++.|..+.-+.|.+-+..++..+|++.
T Consensus 208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 34778899999995554678889999999999976
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=143.63 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=133.8
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-IC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 106 (409)
.....+..|...+.+++|||||+.|+.++.+ ..|++||+.++... ......+ ....++|+|||+.|+++. .+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g---~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 194 FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRG---HNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCC---ccCceeECCCCCEEEEEEecC
Confidence 3456778899999999999999999987654 46999999877432 2222333 244689999999988765 57
Q ss_pred CEEEEE--EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCC-eeeeEEcC
Q 015301 107 AIVNIV--DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQAN-KCSLRIPA 182 (409)
Q Consensus 107 g~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~-~~~~~~~~ 182 (409)
|.+.|| |+.++...... .+...+....|+|||+.|+.++ .++...||++... .....+ .
T Consensus 270 g~~~Iy~~d~~~~~~~~lt----------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLT----------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CcEEEEEEECCCCCeEeec----------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 765555 55554422111 1122467899999999887665 4677777776432 222223 3
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+.. ....|+ |+++.|+..+.++ +.+||+. .+........+ ....+.|+|+|++|+.++.++...+|++.
T Consensus 333 ~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~----~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQIS-ADGKTLVMINGDN-VVKQDLT----SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCC--CCccCC-CCCCEEEEEcCCC-EEEEECC----CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 433 457898 8888888877765 5558864 33322211111 23567899999999999999988888764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-15 Score=123.49 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=201.2
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEE-----eC-----CCcEEEEEcCCCee
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAA-----SQ-----ESNIKVYNVDKNWK 74 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~-----~~-----d~~i~vw~~~~~~~ 74 (409)
+..++|++|++.+......++.+-.......+.-....++++.|||.|.+|.|= .. .-.+.+|+++++ .
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~ 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-V 116 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-e
Confidence 567899999998887777666665554434454444589999999999998862 11 245789999985 3
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
....+......+ .+..|++|..+.+ --..+.+++|+..+.+..... -|...+..+.++|.+
T Consensus 117 ~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k----------------l~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 117 QRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK----------------LSVSGITMLSLSPGP 177 (566)
T ss_pred ehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeee----------------eeccceeeEEecCCC
Confidence 332222222222 4788988875433 233578999999773321111 112258888888863
Q ss_pred C--eEEE-----EEecCeEEEEECCCCeeeeEE---cCCCCCeEEEEEeCCCCcEEEEeeC--C---------CeEEEec
Q 015301 155 Q--ELVA-----AGSDNFIYVYDLQANKCSLRI---PAHKSDVNTVCFADETGHLIFSGSD--D---------SLCKVWD 213 (409)
Q Consensus 155 ~--~l~~-----~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~iwd 213 (409)
. .+++ .+.-+.|+||.......-..+ .-....-..+.|++....+|+.++. | .++++.+
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 2 3333 244568999987632221111 1122334577888433334443332 2 3567777
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEE--eCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN--GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+. +.....-....++|.++.|+|+++.++++ -.--.+.|||++-
T Consensus 258 t~-----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------------------------- 303 (566)
T KOG2315|consen 258 TQ-----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------------------------- 303 (566)
T ss_pred ec-----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------------------------
Confidence 42 33333333357899999999999876654 4567899999875
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
..+..+.... ...+-|+|.|++|+.++.+ |.|-|||+.+.+++..+..... +-+.|+|||+
T Consensus 304 ------~~v~df~egp--------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe 367 (566)
T KOG2315|consen 304 ------KPVFDFPEGP--------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGE 367 (566)
T ss_pred ------CEeEeCCCCC--------ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCc
Confidence 3333332221 1233588899999988764 8999999999999988876543 4578999999
Q ss_pred eEEeecC------CCeEEEEecCCC
Q 015301 369 MLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 369 ~l~s~~~------dg~i~iw~~~~~ 387 (409)
+++|++. |+.++||+....
T Consensus 368 ~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEEeccccEEecCCeEEEEecCc
Confidence 9998864 788999998764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=137.74 Aligned_cols=231 Identities=17% Similarity=0.178 Sum_probs=188.6
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
....+.++.+|+.|+.|+..|.|..+|+.+..........+ .|.++.|..+.++++++ ....+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----------------tv~Dv~~LHneq~~AVA-QK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----------------TVRDVTFLHNEQFFAVA-QKKYV 193 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----------------hhhhhhhhcchHHHHhh-hhceE
Confidence 46788999999999999999999999999988765554443 48889999998888877 46789
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
+|||- .|..+..++.| ..|..+.|. |..-+|++++..|.++.-|+. .++.+..+....+.+..+.-+|-...+
T Consensus 194 yvYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 194 YVYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAVI 266 (545)
T ss_pred EEecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccceE
Confidence 99995 56667777755 578999999 888899999999999999964 888888888888999999999999999
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
-+|...|+|.+|.-.. ..++..+-.|. ..+.++++.++|+
T Consensus 267 h~GhsnGtVSlWSP~s----------------------------------kePLvKiLcH~------g~V~siAv~~~G~ 306 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNS----------------------------------KEPLVKILCHR------GPVSSIAVDRGGR 306 (545)
T ss_pred EEcCCCceEEecCCCC----------------------------------cchHHHHHhcC------CCcceEEECCCCc
Confidence 9999999999999776 23444455555 3445668999999
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
|+|+.+.|..++|||++....+.++.. .-+...+++|..| |++++....|.+|.=
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999999999999999887777654 4567788888655 334445568999953
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-16 Score=134.29 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=150.5
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.++|.+.. ...... .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 176 ~~L~~~D~dG~-~~~~l~---~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQSAL---SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceEec---cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 35677776443 222222 234478899999999999887643 46999999887643322111
Q ss_pred CCcceeeEEEEEcCCCCeEEE-EEecCeEEEE--ECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecc
Q 015301 139 DEDEFGIFSVKFSTDGQELVA-AGSDNFIYVY--DLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDR 214 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 214 (409)
......+|+|||+.|+. .+.++...+| |+.++. ...+..+........|+ ++++.|+..+ .+|...+|.+
T Consensus 240 ----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 240 ----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEE
Confidence 13567899999998875 4556665554 555544 44455555566778999 7888776555 4567777765
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
.. ..+. ...+..+........|+|+|++|+..+.++ .|.+||+.+...
T Consensus 314 ~~--~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------------------------- 364 (427)
T PRK02889 314 PA--SGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------------------------- 364 (427)
T ss_pred EC--CCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--------------------------
Confidence 41 1222 222222223344678999999998777654 699999876321
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+.... ....+.|+|||+.|+.++.++ .+++.++ +++....+..+.+.+...+|+|-
T Consensus 365 ---------~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 365 ---------TALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------EEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 1111110 013568999999998887653 4666666 56666667667788888999874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-16 Score=138.32 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=165.2
Q ss_pred ecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....|...+..++.+++. .++++|+.||+|++|+...-...... ......+.. ...++.++...+.+..+|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----~rS~ltys~----~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----ARSELTYSP----EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce----eeeeEEEec----cCCceEEEEeccCCCeEE
Confidence 345566678888887754 99999999999999998764432100 011111211 233688999999999999
Q ss_pred EEEecCeEEEEECCCCe--e-----eeEEcC-CCCCeEE-EEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 159 AAGSDNFIYVYDLQANK--C-----SLRIPA-HKSDVNT-VCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~-----~~~~~~-~~~~v~~-~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+++.||.|.+.++...+ . ...... ..+.+.+ -+|...... .++.+..-+.|..||+|.. .........
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~--~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR--HDAWRLKNQ 1192 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh--hhHHhhhcC
Confidence 99999999999987521 1 111111 1233333 344433444 7888888999999998732 222222233
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
...+.|++++.+|.+.+++.|...|.+.+||+|-.. ++..+.....
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~----------------------------------~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV----------------------------------PILSWEHPAR 1238 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCc----------------------------------eeecccCccc
Confidence 345789999999999999999999999999998622 2222211110
Q ss_pred eeeeeEEEEeeeecCCCCEEEE-Ee-CCCeEEEEEccCCceEEEeccC-------------------CcceeeeEEecCc
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYT-GS-SDNSVYIYDLVSGAQVAKLDFH-------------------NAPVRDCCWHPIY 367 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~-~~-~dg~v~i~d~~~~~~~~~~~~~-------------------~~~v~~~~~s~~~ 367 (409)
..+.....++ +.|.....++ ++ ..+.|.+|++.+|.+-..+... .-......+..-+
T Consensus 1239 -~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1239 -APIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred -CCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 1111111111 2222334444 44 5788999999988665555321 1112223343345
Q ss_pred CeEEeecCCCeEEEEecCCCcc
Q 015301 368 PMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 368 ~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+.+|+.|..|+.||......
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ceeeecCCccceeeccCCCccc
Confidence 5899999999999999876543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=117.78 Aligned_cols=304 Identities=12% Similarity=0.126 Sum_probs=171.1
Q ss_pred ceeeEEecCceeEeeccce----EEEEeeecCCCceeecCCCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSF-FVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.-+.|+.|..+....... .++.+....--..++.-..++..+.|||||+. |.+..-|-.|.||.+.+......
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~- 129 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL- 129 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-
Confidence 4557788888876654432 33333322222366777788999999999965 55666788999999988644332
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC---ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS---ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (409)
....+ .+..++|+|||++.+.++........++..- ........ .+...+.+.|+|||.
T Consensus 130 -~~pK~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~---------------dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 130 -PHPKT--NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKL---------------DTIDLTGIEWSPDGN 191 (447)
T ss_pred -ccccc--CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCC---------------CcccccCceECCCCc
Confidence 22222 5788999999999988764321111111100 00000000 011244556666655
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc-------------------
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC------------------- 216 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------- 216 (409)
.|++- |-.-.-.+..+. -.-.+..++|+ |.+++|++|+.|+.+++.+--+
T Consensus 192 ~laVw---------d~~Leykv~aYe-~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 192 WLAVW---------DNVLEYKVYAYE-RGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred EEEEe---------cchhhheeeeee-eccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 44432 211000011111 11234555565 5555666666665555543100
Q ss_pred -------------------------------------cc------cCCceeeeeeccccceeEEEEcCCCCeEEEEeC--
Q 015301 217 -------------------------------------FI------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-- 251 (409)
Q Consensus 217 -------------------------------------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 251 (409)
.. ...++........-.+.-++|++|..++++-..
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~ 340 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKY 340 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCC
Confidence 00 000111111122345677999999998888654
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
-+.+-+||+++.+.-.. +... ..+....|+|....|+.+
T Consensus 341 PnalW~Wdlq~l~l~av----------------------------------LiQk-------~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAV----------------------------------LIQK-------HPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred CceEEEEechhhhhhhh----------------------------------hhhc-------cceeEEEeCCCCceEEEE
Confidence 46799999987332111 1100 111223577778888888
Q ss_pred eCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 332 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
....++++|.......+. .....-.|..++|.-+|..++-.+.|...
T Consensus 380 tg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 380 TGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 888889999875433333 33344579999999999999999998643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=123.35 Aligned_cols=323 Identities=16% Similarity=0.202 Sum_probs=197.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..++||.+.|++...-|...-+++.+.|.+++||--.+..+..... ......+++++.+.++...|+++-..|++.-+.
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 4678999999999998988889999999999999755442332222 122334799999999999999999999998887
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe----------------------------
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF---------------------------- 165 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------------------------- 165 (409)
+...-.. +.+......|...+..+-|+....++++.+.|..
T Consensus 97 ~sedfnk-----------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 97 LSEDFNK-----------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred hhhhhhh-----------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 6532111 0111111233334555555444444444443332
Q ss_pred -----------EEEEEC--CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 166 -----------IYVYDL--QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 166 -----------i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
|.+..+ ..-.++.++.+|.+.+.+++|. +...+|++|..|..+.+||+- ........+.+|..
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHND 241 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEecc---CCcceeeeeccchh
Confidence 222221 1223455677999999999999 888999999999999999984 44556677889999
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc-------cccccccccccccccccceeccccCccceeeeec
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS-------RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
.|..+...+--+.+++++.||.|.+||++........-. ......|+...+-.........+.-.+.-..+.+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~ 321 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG 321 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence 999999888888999999999999999987443222110 0011111111111100000000000000000000
Q ss_pred ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE--------EEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI--------YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i--------~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
. -+.+.....+-+..-.+++ +|.. ..++.....-...|+.+.+..+-.+|+|+|.|.
T Consensus 322 ~--------------c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~-~t~LA~phei~tgItamhlqetlglLvTsG~~R 386 (404)
T KOG1409|consen 322 K--------------CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE-RTPLAIPHEIKTGITAMHLQETLGLLVTSGTDR 386 (404)
T ss_pred c--------------cccCccccccccceeEEEEecccchhhhcCC-CCccccccccccceeEEEhhhhccceeecCCce
Confidence 0 0001111111112223333 3332 233444443345799999988888999999999
Q ss_pred eEEEEecCCC
Q 015301 378 NIVRWEIPGI 387 (409)
Q Consensus 378 ~i~iw~~~~~ 387 (409)
.|+|||+..-
T Consensus 387 vi~iwd~~~v 396 (404)
T KOG1409|consen 387 VIKIWDVRSV 396 (404)
T ss_pred EEEEEechhh
Confidence 9999999753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-15 Score=130.28 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=151.3
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.. ...... .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.......
T Consensus 182 ~~l~~~d~dg~-~~~~lt---~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~------------- 244 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLT---DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF------------- 244 (435)
T ss_pred eEEEEECCCCC-CcEEEe---cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-------------
Confidence 36888887654 323222 34447999999999999988763 46899999988764322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iw 212 (409)
...+...+|+|||+.|+.. +.++ .|++||+.+++. ..+..+........|+ |+++.|+..+ .+| .|.++
T Consensus 245 ---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 245 ---PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ---CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEEE
Confidence 1146678999999987654 4444 588889987765 4455566667789999 7888777665 344 57777
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. . .....+..+...+....|+|+|+.|+....+ ..|.+||+....
T Consensus 320 d~~----g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------- 369 (435)
T PRK05137 320 NAD----G-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------- 369 (435)
T ss_pred ECC----C-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-------------------------
Confidence 753 2 2233333344556778899999999877653 357777764411
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC------CeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD------NSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
...+... .....+.|+|||+.|+..+.+ ..++++|+..++. ..+. ..+.+...+|
T Consensus 370 ----------~~~lt~~-------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~W 430 (435)
T PRK05137 370 ----------ERILTSG-------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAW 430 (435)
T ss_pred ----------eEeccCC-------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCccc
Confidence 1111110 012356899999998876543 3688888866554 4454 3445777888
Q ss_pred ecC
Q 015301 364 HPI 366 (409)
Q Consensus 364 s~~ 366 (409)
+|-
T Consensus 431 sp~ 433 (435)
T PRK05137 431 SPL 433 (435)
T ss_pred CCC
Confidence 873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=133.00 Aligned_cols=234 Identities=20% Similarity=0.193 Sum_probs=151.4
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.+||.+.. ...... .+...+.+.+|+|||+.|+..+. +..|.+||+.+++........
T Consensus 184 ~~l~i~D~~g~-~~~~lt---~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGY-NPQTIL---RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCC-CceEee---cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 46889998654 333322 23347889999999999998864 347999999877543222111
Q ss_pred CCcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCe--EEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~iw 212 (409)
....+.+|+|+|+.|+.. +.++ .|++||+.+++.. .+..+.......+|+ ++++.|+..+ .+|. |.++
T Consensus 248 ----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 ----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 124468999999987644 4444 6999999888754 455555556788999 7888777665 4555 5555
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. .+. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+...
T Consensus 322 dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------------------ 372 (433)
T PRK04922 322 AAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------------------ 372 (433)
T ss_pred ECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------------------
Confidence 542 222 222222333445689999999988765443 589999866221
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+.... ....+.|+|||++|+..+.+ +.++++++. +.....+..+.+.+...+|+|
T Consensus 373 -----------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 373 -----------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -----------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 1111110 01245799999988877663 468888874 455666666667788888987
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-15 Score=113.38 Aligned_cols=240 Identities=13% Similarity=0.166 Sum_probs=157.5
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEe---
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGS--- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~--- 162 (409)
...+++|+.|...+++|..+| .+||+.+.-+.......... ...+..+-| ..++|+ +|+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-------------G~~~veMLf--R~N~laLVGGg~~p 70 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-------------GFKIVEMLF--RSNYLALVGGGSRP 70 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-------------chhhhhHhh--hhceEEEecCCCCC
Confidence 355699999999999888666 78999876332111111100 012333333 223333 3333
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--cceeEE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--EGITFI 237 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~ 237 (409)
-..|.|||-...+++.++. ...+|.++.+. + +.|++.- ++.|++|... .+.+.+..+.... ....++
T Consensus 71 ky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~-r--~riVvvl-~~~I~VytF~---~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLR-R--DRIVVVL-ENKIYVYTFP---DNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CCCCceEEEEecccCcEEEEEE-eccceeeEEEc-C--CeEEEEe-cCeEEEEEcC---CChhheeeeecccCCCceEee
Confidence 2579999977777777776 57899999997 3 3455543 5789999864 2334444443222 223333
Q ss_pred EEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 238 DSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 238 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+-..+..+|+. |-.-|.|+|-|+..... .....+..|... +
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------------------------------~~p~~I~AH~s~------I 184 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKP--------------------------------NAPSIINAHDSD------I 184 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCc--------------------------------CCceEEEcccCc------e
Confidence 22223334444 33468999999876321 123455666633 3
Q ss_pred EeeeecCCCCEEEEEeCCCe-EEEEEccCCceEEEeccC--CcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 317 FSPEYSTAQKYIYTGSSDNS-VYIYDLVSGAQVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
-+++...+|.++|+++..|+ |+|||..+|+.+.+++.- ...|.+++|||+..+|+.+|.-|+|.|+.+....
T Consensus 185 acv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 185 ACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 34467778999999999987 799999999999999642 4579999999999999999999999999997644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-15 Score=129.07 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=135.5
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SIC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 106 (409)
.....+..+...+.+.+|||||+.|+..+. +..|.+|++.+++. .......+ .+...+|+|||+.|+.. +.+
T Consensus 189 ~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~---~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 189 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPR---HNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCC---CcCCeEECCCCCEEEEEEcCC
Confidence 345667777889999999999999986542 35799999987743 22222333 34568999999988865 334
Q ss_pred C--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-C--eEEEEECCCCeeeeEEc
Q 015301 107 A--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-N--FIYVYDLQANKCSLRIP 181 (409)
Q Consensus 107 g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~ 181 (409)
| .|.+||+.+++....... ...+....|+|+|+.|+..+.+ + .|+++|+.+++.. .+.
T Consensus 265 g~~~I~~~d~~tg~~~~lt~~----------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt 327 (429)
T PRK03629 265 GSLNLYVMDLASGQIRQVTDG----------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT 327 (429)
T ss_pred CCcEEEEEECCCCCEEEccCC----------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence 4 588999987654322211 1136778999999998877754 3 5666677766543 343
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc---E
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT---T 255 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i 255 (409)
.+........|+ |+++.|+..+.+ ..|.+||+. .+.. ..+... .......|+|||+.|+.++.++. +
T Consensus 328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 344456678899 888888776543 357888864 3322 222221 22346789999999999888764 5
Q ss_pred EEeeCC
Q 015301 256 KLWDIR 261 (409)
Q Consensus 256 ~iwd~~ 261 (409)
.++++.
T Consensus 401 ~~~~~~ 406 (429)
T PRK03629 401 NLVSTD 406 (429)
T ss_pred EEEECC
Confidence 666664
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=119.44 Aligned_cols=320 Identities=11% Similarity=0.110 Sum_probs=202.0
Q ss_pred eeeEEecCceeEeeccceEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCC
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-----------ESNIKVYNVDK 71 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----------d~~i~vw~~~~ 71 (409)
.-+.|||-|.|+++--...+..+--. ...+++ .|. .|.-+.|||..+||+|-+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 45899999999988543332222111 111111 243 4889999999999999653 15699999999
Q ss_pred Ceeeeeeeec--ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 72 NWKIQKDIET--KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 72 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
|......... ....++ -..||.|++++|--.. ..|.||+..+-.......+. ..+|....
T Consensus 292 G~lkrsF~~~~~~~~~WP--~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk---------------i~gIr~Fs 353 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWP--IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK---------------ISGIRDFS 353 (698)
T ss_pred cchhcceeccCCCccccc--eEEeccCCceeEEecc-ceEEEEecCceeeecccccC---------------CccccCcc
Confidence 9555444332 222223 3689999999997765 56889987664332222111 12588999
Q ss_pred EcCCCCeEEEEEe-----cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee----------CCCeEEEecc
Q 015301 150 FSTDGQELVAAGS-----DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS----------DDSLCKVWDR 214 (409)
Q Consensus 150 ~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iwd~ 214 (409)
|+|.++.||.=.. -..+.+..+.+++.+++-..|.-.=..+-|- .+|.+|+.-- .-..+.|+.+
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 9999888875433 2467788888887777665555444556676 7788776521 1123566666
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
| +...++. ...-...|...+|-|.|+.+++-+. ..++.+|.+++....
T Consensus 433 r---eKdIpve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~------------------------- 483 (698)
T KOG2314|consen 433 R---EKDIPVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK------------------------- 483 (698)
T ss_pred e---ccCCCce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-------------------------
Confidence 5 2222222 2335678899999999998877654 346888877642111
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
...+..+.. ..+..+.|+|.|++++.+. ..|.+.++|+.......+-.......+.+.|.|.|+
T Consensus 484 -----~~lVk~~dk--------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR 550 (698)
T KOG2314|consen 484 -----PSLVKELDK--------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR 550 (698)
T ss_pred -----hhhhhhhcc--------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence 111222222 1234557889999998875 468899999874332222222223567899999999
Q ss_pred eEEeecC------CCeEEEEecCCC
Q 015301 369 MLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 369 ~l~s~~~------dg~i~iw~~~~~ 387 (409)
|++|++. |.--++|++...
T Consensus 551 YvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 551 YVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEEeeehhhhccccceEEEEeecH
Confidence 9999874 556778887654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-15 Score=113.00 Aligned_cols=275 Identities=17% Similarity=0.150 Sum_probs=180.1
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
-|.+.+|++...+..............+..|.|.- ++. .|+-+...|.|.++.................. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i~- 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---IS- 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---hh-
Confidence 36788999887644331111122334577777753 344 56677788999999876544322211111100 00
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.....++.|++.+..++++..+|.+.+.+....... +..+.|..+....+|+..+.+++++|+.|+.+.-||+
T Consensus 121 -----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 121 -----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred -----heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 002567889999999999999999997776655444 3788999999999999888899999999999999999
Q ss_pred cccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
| .+..-.....+-|...|.+|.-+| .+.++++|+.|..|++||.|+...+.....
T Consensus 196 R--~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---------------------- 251 (339)
T KOG0280|consen 196 R--IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---------------------- 251 (339)
T ss_pred c--CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----------------------
Confidence 8 333333333667888999998776 577999999999999999997543221100
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCC--CCEEEEEeCCCeEEEEEccCC--c---eEEEeccCCcceeeeEEecC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTA--QKYIYTGSSDNSVYIYDLVSG--A---QVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~--~---~~~~~~~~~~~v~~~~~s~~ 366 (409)
.. ..+|....+|. +++|+++-.+| .+|-+...+ + .....+.|.+-+..-.|...
T Consensus 252 --------------v~----GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 252 --------------VG----GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred --------------cc----cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 00 22233333331 34455555555 567666544 3 34555678888888888655
Q ss_pred cCeEEeec-CCCeEE-EEecCCC
Q 015301 367 YPMLISSS-WDCNIV-RWEIPGI 387 (409)
Q Consensus 367 ~~~l~s~~-~dg~i~-iw~~~~~ 387 (409)
...|+|++ .|..++ +|-.-++
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cceeeeeeccccceeeeeeeccC
Confidence 55788875 577755 7865443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-14 Score=116.75 Aligned_cols=317 Identities=15% Similarity=0.154 Sum_probs=199.9
Q ss_pred eeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC---------------CcEEEEEc
Q 015301 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---------------SNIKVYNV 69 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---------------~~i~vw~~ 69 (409)
+.+.+||.|.|+++.....+.-+-.........--...|.-+.|||.++||.|=+.. ..+.+||.
T Consensus 36 ~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~ 115 (561)
T COG5354 36 AYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI 115 (561)
T ss_pred hheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec
Confidence 567899999998886644333322222222233334569999999999999986543 34999999
Q ss_pred CCCeeeeeeeecccccceEE-EEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 70 DKNWKIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.++..+........ ..... -+.|+-+.+++|-. ....++++++ +............ ...+...
T Consensus 116 ~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr-------------~~gi~dF 179 (561)
T COG5354 116 ASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR-------------PVGILDF 179 (561)
T ss_pred cCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc-------------ccceeeE
Confidence 99855443322222 11122 46788888877654 3456899997 4333211111100 1248888
Q ss_pred EEcCCC--CeEEE-----EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-----------CCCeEE
Q 015301 149 KFSTDG--QELVA-----AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-----------DDSLCK 210 (409)
Q Consensus 149 ~~~~~~--~~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~dg~i~ 210 (409)
.|+|.+ ..|+. .+..+.+++|.+..+..+.+-.-....-..+.|. +.+++|+.-- ....++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEE
Confidence 888853 33443 3457899999998776655433233334678888 6676665421 124577
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe--CCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
+++++ ...+.......++|...+|.|.++.+++.+ .+-.+.++|++..
T Consensus 259 l~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------------------- 308 (561)
T COG5354 259 LLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------------------- 308 (561)
T ss_pred EEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-------------------------
Confidence 88864 223333335678999999999988876655 6788999998862
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEE-EeccCCcceeeeEEe
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVA-KLDFHNAPVRDCCWH 364 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~-~~~~~~~~v~~~~~s 364 (409)
+..+-.... -..+.|||.+++++.++-| |.+-+||......+. .+.+.+ ..-+.|+
T Consensus 309 -----------l~~~~Pe~~-------rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~ws 368 (561)
T COG5354 309 -----------LRFYFPEQK-------RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWS 368 (561)
T ss_pred -----------eEEecCCcc-------cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeecc
Confidence 111111111 1123588889999987765 789999987664443 565433 4557899
Q ss_pred cCcCeEEeec------CCCeEEEEecCCCc
Q 015301 365 PIYPMLISSS------WDCNIVRWEIPGIG 388 (409)
Q Consensus 365 ~~~~~l~s~~------~dg~i~iw~~~~~~ 388 (409)
||++++.+.. .|..+.+|++....
T Consensus 369 pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 369 PDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCceEEEecCCCcccccCcceEEEEecCch
Confidence 9999776653 47899999997643
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=118.86 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=182.8
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeeeeee---eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 39 MNSRVYTSQFSNDGS--FFVAASQESNIKVYNVDKNWKIQKD---IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 39 h~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
-...|..++|.-+++ .|...+.|..+..+.+......... ........+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446788888876654 4544546666777777665333221 0122223456666554 34677888899999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEec--CeEEEEECCCCeeeeEEcCC-------
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSD--NFIYVYDLQANKCSLRIPAH------- 183 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~v~d~~~~~~~~~~~~~------- 183 (409)
...+............ ..++..+.-++...+++ +|+.. ..+.+||+++.+.+.+-+.-
T Consensus 132 ~k~~d~hss~l~~la~------------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT------------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred ccCCccccccceeeec------------CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 9865532111111000 11467777777655554 58877 78999999988666543221
Q ss_pred --CCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 184 --KSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 184 --~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
.-.++++.|. +. ...|++++.-+.+++||.+ ...+++..+.-...+++++...|+++.++++..-|.+..||
T Consensus 200 rVPvW~tdi~Fl-~g~~~~~fat~T~~hqvR~YDt~---~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 200 RVPVWITDIRFL-EGSPNYKFATITRYHQVRLYDTR---HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred eeeeeeccceec-CCCCCceEEEEecceeEEEecCc---ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence 1246788888 44 6789999999999999986 45667777777788999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceee-eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT-YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVY 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~ 338 (409)
++... .+.. +.+.. ..+.++...|.+++|++++.|..|+
T Consensus 276 ~r~~k----------------------------------l~g~~~kg~t------Gsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 276 LRGGK----------------------------------LLGCGLKGIT------GSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred ccCce----------------------------------eeccccCCcc------CCcceEEEcCCCceEEeeccceeEE
Confidence 99832 2222 33322 3344556778889999999999999
Q ss_pred EEEccCCceEEEeccCCcceeeeEEecC
Q 015301 339 IYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 339 i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
|+|+.+.+++.... -...++.+-+.++
T Consensus 316 IhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 316 IHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred Eeecccchhhhhhh-hhccccEEEecCC
Confidence 99999977765543 2345566666544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=127.08 Aligned_cols=266 Identities=15% Similarity=0.196 Sum_probs=189.3
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQEL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 157 (409)
.+..|.+.|..+.|+..|..|++++.|..|.+||+.......... .+|...|....|-| +...+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~--------------SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE--------------SGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc--------------cccccchhhhhccCCCCCcCc
Confidence 355688899999999999999999999999999998876543322 24555677778887 44678
Q ss_pred EEEEecCeEEEEECCC-Cee--eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc--
Q 015301 158 VAAGSDNFIYVYDLQA-NKC--SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-- 232 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 232 (409)
++++.||.+++=.+.. +.. ...+..|.++|..++.-|....-|.+++.|+.+.-+|+|......... ....+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER 281 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence 9999999999877643 322 234567999999999998888999999999999999998543333333 2222333
Q ss_pred -ceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 233 -GITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 233 -~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
....++..|... .+++++.|..+++||.+........ ..+..+..+....
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE 333 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence 567888888655 7999999999999999874332111 1233333333222
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC--C----------ceEEE-eccCCc--ceeeeEE-ecCcCeEEeec
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS--G----------AQVAK-LDFHNA--PVRDCCW-HPIYPMLISSS 374 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~--~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~s~~ 374 (409)
.....+..+.|+.++.-|+++..|-.|+++.-.- | ..+.. +++|.. .|..+-| -|...|+++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 2233455667886777777777888899995432 2 12223 678854 5667754 67788999999
Q ss_pred CCCeEEEEecCCCc
Q 015301 375 WDCNIVRWEIPGIG 388 (409)
Q Consensus 375 ~dg~i~iw~~~~~~ 388 (409)
.-|.|.||+-.+++
T Consensus 414 DCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGE 427 (559)
T ss_pred ccceEEEEecchhH
Confidence 99999999976654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-13 Score=113.91 Aligned_cols=265 Identities=14% Similarity=0.162 Sum_probs=155.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~ 113 (409)
++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+.... . ....+++++||++++++. .++.+.++|
T Consensus 31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-G---NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-S---EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-C---CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 44433333345789999999999999999999999999766654332 2 478899999999998775 689999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeee-EEcCCCCCeEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSL-RIPAHKSDVNTVC 191 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~ 191 (409)
.++.+............ ......+..+..+|....+++.-. .+.|.+.|....+.+. .............
T Consensus 107 ~~tle~v~~I~~~~~~~--------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPV--------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp TTT--EEEEEE--EE-T--------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred cccccceeecccccccc--------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 98877644332221111 012335778888888886666655 4889999987654432 2222455677889
Q ss_pred EeCCCCcEEEEe-eCCCeEEEeccccc---------------------------------------------------cc
Q 015301 192 FADETGHLIFSG-SDDSLCKVWDRRCF---------------------------------------------------IS 219 (409)
Q Consensus 192 ~~~~~~~~l~~~-~~dg~i~iwd~~~~---------------------------------------------------~~ 219 (409)
|. +++++++++ ..+..|-++|.... ..
T Consensus 179 ~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 179 FD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp E--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred cC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 98 777776554 45667777775410 00
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE----eCCCcEEEeeCCCCcccccccccccccccccccccccccceecccc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN----GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (409)
..+.+..+.....+ ..+..+|+++++.+. ...+.|.++|.++.+
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~------------------------------- 305 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK------------------------------- 305 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-------------------------------
T ss_pred cCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-------------------------------
Confidence 01111112212222 445667888888776 345788888887732
Q ss_pred CccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--CCeEEEEEccCCceEEEec
Q 015301 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--DNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~ 352 (409)
.+..+..... ..+..+.|+++|+.+..+.. ++.|.+||..+.+.+.++.
T Consensus 306 ---~~~~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 ---VVKTITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ---EEE-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ---eeEEEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 1222221111 11456689999997766554 3479999999999998887
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-13 Score=112.48 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=172.9
Q ss_pred EEEEeCC----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEec----CCEEEEEEcCCC--cccccc
Q 015301 55 FVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CAIVNIVDVGSS--ARESLA 123 (409)
Q Consensus 55 l~t~~~d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~~w~~~~~--~~~~~~ 123 (409)
+++|+.. +.|.+|+++.. ..+..... .........++++|++++|.++.. ++.|..|++... ......
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 68999988322 23332222 112235777999999999998866 578999988764 322222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCC-CeeeeE---Ec----------CCCCCeE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR---IP----------AHKSDVN 188 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~-~~~~~~---~~----------~~~~~v~ 188 (409)
..... ......++++|++++|+++.. +|.|.++++.. +..... +. .......
T Consensus 81 ~~~~~-------------g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 81 SVPSG-------------GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEEES-------------SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred eeccC-------------CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 21110 114667999999999999875 89999999976 443322 11 1234578
Q ss_pred EEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcc
Q 015301 189 TVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSS 265 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~ 265 (409)
++.++ |+++++++.. ....|.+|++............+ .........+.|+|+++++.+..+ ++.|.++++.....
T Consensus 148 ~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 148 QVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 89999 7888777654 34579999975211111111122 233456789999999998876655 77899998873111
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEcc-
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLV- 343 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~- 343 (409)
.. ..+..................+.++|||++|+++.. ++.|.+|++.
T Consensus 227 ~~------------------------------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 227 SL------------------------------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EE------------------------------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred ce------------------------------eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 00 001111100000000012335578999999888764 6789999993
Q ss_pred -CC--ceEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecCC
Q 015301 344 -SG--AQVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 386 (409)
Q Consensus 344 -~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 386 (409)
++ +.+..+.........++++|+|++|+++. .++.|.+|+++.
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 23 33444444445578999999999888765 667999998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-14 Score=123.57 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=141.0
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
.|.++|.......... .+...+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.
T Consensus 183 ~l~~~d~dg~~~~~lt----------------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~ 245 (435)
T PRK05137 183 RLAIMDQDGANVRYLT----------------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP 245 (435)
T ss_pred EEEEECCCCCCcEEEe----------------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC
Confidence 6888887654432221 12235899999999999988764 468999999888654 344566
Q ss_pred CCeEEEEEeCCCCcEEE-EeeCCCe--EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEe
Q 015301 185 SDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLW 258 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iw 258 (409)
+.+...+|+ |+++.|+ +.+.++. |.+||+. .+ ....+..+........|+|||+.|+..+. +| .|.++
T Consensus 246 g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~----~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 246 GMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLR----SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred CcccCcEEC-CCCCEEEEEEecCCCceEEEEECC----CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 677889999 7777654 5566665 6666753 33 33445555566677899999998887764 33 57777
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---C
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---N 335 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g 335 (409)
|+.... ...+.... .....+.|+|||+.|+....+ .
T Consensus 320 d~~g~~-----------------------------------~~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 320 NADGSN-----------------------------------PRRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred ECCCCC-----------------------------------eEEeecCC------CcccCeEECCCCCEEEEEEcCCCce
Confidence 765421 11111111 112346799999999887653 3
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC------CeEEEEecCCCccc
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD------CNIVRWEIPGIGEA 390 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~ 390 (409)
.|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.+ ..|++.++......
T Consensus 359 ~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 359 SIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred EEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 688889865543 3333 23357788999999977664432 36888888665443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=126.38 Aligned_cols=186 Identities=16% Similarity=0.243 Sum_probs=131.5
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee--cccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccce
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--TKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.|++--|+.|-.-|.|.+.|.... .+.+++. ..-.+..|+++.|-|.+ ..++++-.+|.++++|............
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345556777777788888886542 2221111 11123579999999854 4556667899999998742211100000
Q ss_pred eceeeeee------eecCC-------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 126 TEIHKGLD------FSADG-------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 126 ~~~~~~~~------~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
......-. ..... .--...|+..+|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 00000000 00000 011236899999999999999999999999999999988877777788999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+ ||+++|++|++|.-|.||.+ ...+.+..-.+|+..|..++|.
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf----~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSF----EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred c-CCccEEEecCCcceEEEEEe----ccceEEEeccccccceeeEeec
Confidence 9 99999999999999999996 4788888889999999999998
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=124.35 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=128.5
Q ss_pred eeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 219 (409)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+ |+++.|+ +.+.+|...+|.+..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 58889999999999887643 469999999887543 33334556789999 7887665 567788877776541
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.+.....+..+........|+|||+.|+..+. +|...+|.+.... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------------------------------g 318 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------------------------------G 318 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------------------------------C
Confidence 22234444445555667889999998876654 4666777654211 0
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
....+.... .....+.|||||++|+..+.++ .|++||+.+++... +.. ........|+||++.|+.++.
T Consensus 319 ~~~~lt~~g------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 319 AAQRVTFTG------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ceEEEecCC------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEe
Confidence 011111000 0112467999999998877654 69999998887543 332 234467899999997777664
Q ss_pred CC---eEEEEecCC
Q 015301 376 DC---NIVRWEIPG 386 (409)
Q Consensus 376 dg---~i~iw~~~~ 386 (409)
++ .+.+-++..
T Consensus 391 ~~g~~~l~~~~~~g 404 (427)
T PRK02889 391 QGGRSVLAAVSSDG 404 (427)
T ss_pred cCCCEEEEEEECCC
Confidence 43 355555543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-14 Score=124.42 Aligned_cols=205 Identities=16% Similarity=0.084 Sum_probs=136.5
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ec
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SI 105 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~ 105 (409)
...+..+..|...+.+.+|+|||+.|+..+.+ ..|++|++.++... ...... +...+.+|+|||+.|+.. +.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~---g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFR---GINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCC---CCccCceECCCCCEEEEEEeC
Confidence 44556788888899999999999999987643 46999999877432 222222 235578999999988644 44
Q ss_pred CC--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cC--eEEEEECCCCeeeeEE
Q 015301 106 CA--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DN--FIYVYDLQANKCSLRI 180 (409)
Q Consensus 106 dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 180 (409)
+| .|++||+.+++....... .......+|+|||+.|+..+. +| .|+++|+.+++... +
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~----------------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l 331 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNH----------------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L 331 (433)
T ss_pred CCCceEEEEECCCCCeEECccC----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e
Confidence 44 699999987764322111 112456799999999887764 33 47777887766433 3
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCC---eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---Cc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDS---LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QT 254 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 254 (409)
..+......++|+ |+++.|+..+.++ .|.+||+. .+... .+. +........|+|||++++..+.+ +.
T Consensus 332 t~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~----~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 332 TFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLS----TGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECC----CCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 2333445578999 7888887765433 58899964 33322 222 22234567899999988776653 35
Q ss_pred EEEeeCCC
Q 015301 255 TKLWDIRK 262 (409)
Q Consensus 255 i~iwd~~~ 262 (409)
|.++++..
T Consensus 405 L~~~~~~g 412 (433)
T PRK04922 405 LAAVSTDG 412 (433)
T ss_pred EEEEECCC
Confidence 67777643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-15 Score=112.05 Aligned_cols=152 Identities=11% Similarity=0.205 Sum_probs=105.8
Q ss_pred EEEEEeCCCCcEEEEeeC----------CCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCeEEEE--eCCCc
Q 015301 188 NTVCFADETGHLIFSGSD----------DSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISN--GKDQT 254 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~ 254 (409)
..+.|+ ++|+.|+.-.. -|...+|.++. .......+.- ..++|.+++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 467788 66666554332 13455666541 2233333332 34579999999999987654 35779
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 333 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 333 (409)
+.+||++. ..+..+.... ...+.|||+|++|++++.
T Consensus 85 v~lyd~~~-----------------------------------~~i~~~~~~~--------~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 85 VTLYDVKG-----------------------------------KKIFSFGTQP--------RNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred cEEEcCcc-----------------------------------cEeEeecCCC--------ceEEEECCCCCEEEEEEcc
Confidence 99999863 2333333221 124579999999999874
Q ss_pred --CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC------CCeEEEEecCCCc
Q 015301 334 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW------DCNIVRWEIPGIG 388 (409)
Q Consensus 334 --dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 388 (409)
.|.|.+||+++.+.+.... |. .++.++|+|||++|++++. |+.++||++....
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 4779999999999888876 33 4789999999999998864 7899999997543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=115.42 Aligned_cols=213 Identities=14% Similarity=0.177 Sum_probs=155.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcE-EEEEecC--CEEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRF-LVYASIC--AIVNIVD 113 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d--g~i~~w~ 113 (409)
....++|..++.. | ..|++|-.+|.+.+|..+.+...............+..+.-++...+ +++|+.. ..+.+||
T Consensus 102 ~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 3445566666554 3 35777788999999999854211111111111125777777776554 5558888 7899999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~ 190 (409)
++..+.....+... ...+.+ .-.-.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.....+++++
T Consensus 180 le~~~qiw~aKNvp-nD~L~L-----rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVP-NDRLGL-----RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred cccceeeeeccCCC-Cccccc-----eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 98874432222111 000000 01225778899887 788999999999999999765 5677787788999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
... |.++++++|..-|.+..||+| .+..... +.+..+.|+++..+|.+.++++++-|..|+|+|+.+
T Consensus 254 ~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999 899999999999999999987 5555555 788899999999999999999999999999999988
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=109.28 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=105.1
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE--ecCCEEEE
Q 015301 44 YTSQFSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA--SICAIVNI 111 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~~ 111 (409)
..+.|+|+|++|++-.. -+...+|.++............. .++|.+++|+|+++.+|+. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45778999988765432 13466666644322222222222 3369999999999987655 35679999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
||++.... .... ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..++
T Consensus 88 yd~~~~~i---~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t 147 (194)
T PF08662_consen 88 YDVKGKKI---FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDAT 147 (194)
T ss_pred EcCcccEe---Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEE
Confidence 99962221 1111 125788999999999999875 4679999999888877665 3 3478
Q ss_pred EEEEeCCCCcEEEEeeC------CCeEEEecc
Q 015301 189 TVCFADETGHLIFSGSD------DSLCKVWDR 214 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~------dg~i~iwd~ 214 (409)
.++|+ |+|++|+++.. |+.++||+.
T Consensus 148 ~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 148 DVEWS-PDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEc-CCCCEEEEEEeccceeccccEEEEEe
Confidence 99999 89999998874 677899996
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-11 Score=105.04 Aligned_cols=284 Identities=15% Similarity=0.192 Sum_probs=167.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ----ESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVD 113 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~----d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~ 113 (409)
......++++|++++|.+... ++.|..|++... ..+...............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345667889999999988866 578999998765 23333322222233567899999999999987 589999999
Q ss_pred cCCC-ccccccceeceeeeeeeecC-CCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCe--ee--eEE-cCCCC
Q 015301 114 VGSS-ARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANK--CS--LRI-PAHKS 185 (409)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~--~~--~~~-~~~~~ 185 (409)
+... ......... .+.+. .+. .........++.++|+++++++... ...|.+|++.... .. ..+ .....
T Consensus 116 l~~~g~l~~~~~~~-~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 116 LDDDGSLGEVVQTV-RHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp ECTTSEEEEEEEEE-ESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred ccCCcccceeeeec-ccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9874 322221111 01110 111 0112335789999999999888754 4579999987654 21 222 23456
Q ss_pred CeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCCCeEEEEeC-CCcEEE
Q 015301 186 DVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDGRYFISNGK-DQTTKL 257 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~i 257 (409)
....++|+ ++++++++. ..++.|.++++................ ......+.++|||++|+++.. .+.|.+
T Consensus 193 GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 193 GPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 67999999 677776555 467889999875111111122222111 125678999999998877664 678999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCe
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~ 336 (409)
|++.... ..+.......... .....+.++|+|++|+++.. ++.
T Consensus 272 f~~d~~~---------------------------------g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 272 FDLDPAT---------------------------------GTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEECTTT---------------------------------TTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTTE
T ss_pred EEEecCC---------------------------------CceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCCe
Confidence 9985411 1111111111000 11235578999999998875 578
Q ss_pred EEEEEcc--CCceEEEec-cCCcceeeeEE
Q 015301 337 VYIYDLV--SGAQVAKLD-FHNAPVRDCCW 363 (409)
Q Consensus 337 v~i~d~~--~~~~~~~~~-~~~~~v~~~~~ 363 (409)
|.+|++. +|.+...-. ..-....|+.|
T Consensus 316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999774 555433322 12234455554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-13 Score=119.30 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=147.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
..|.++|.+.. ....... +...+...+|+|||++|+.+..+ ..|++||+.+++.......
T Consensus 170 ~~l~~~d~~g~-~~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------------- 232 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------------- 232 (417)
T ss_pred ceEEEEcCCCC-CCEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence 35788887644 2333222 23368889999999999987644 4799999987754322111
Q ss_pred CCcceeeEEEEEcCCCCeEEEEE-ec--CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CC--eEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAG-SD--NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DS--LCKVW 212 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iw 212 (409)
...+.+++|+|+|+.|+... .+ ..|++||+.+++.. .+..+........|+ ++++.|+..+. ++ .|.++
T Consensus 233 ---~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 233 ---PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred ---CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence 11356689999999877543 33 36999999877543 344455555677899 78887766553 34 46666
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
|+. .+. ...+..+........|+|++++++..+.++ .|.+||+.+..
T Consensus 308 d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------- 357 (417)
T TIGR02800 308 DAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------- 357 (417)
T ss_pred ECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-------------------------
Confidence 653 222 233444455667889999999999888765 78888876521
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
...+.... ....+.|+|++++|+..+.++ .+++.+. +++....+..+.+.+..++|+
T Consensus 358 ----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 ----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111110 012457899999888877754 4555554 455556665555566666653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-12 Score=101.29 Aligned_cols=282 Identities=17% Similarity=0.109 Sum_probs=178.9
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCC--Cccccccceeceeeeeeee
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGS--SARESLANVTEIHKGLDFS 135 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~ 135 (409)
+.-|++|++++..............+.++-++|+|+++.|.++.. +|.|..|.++. ++..........
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence 456999999865444444444455567899999999999988854 46777777765 443322221111
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCC-CeeeeE--EcCCCCC----------eEEEEEeCCCCcEEE
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQA-NKCSLR--IPAHKSD----------VNTVCFADETGHLIF 201 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~~l~ 201 (409)
..+.+.++++++|++++++.. .|.|.++-++. |.+... ...|.+. +....+. |++++|+
T Consensus 88 ------g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~ 160 (346)
T COG2706 88 ------GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLV 160 (346)
T ss_pred ------CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEE
Confidence 113488999999999998876 58899998865 433221 2224444 7788888 8888888
Q ss_pred EeeC-CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccc
Q 015301 202 SGSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 202 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+.+- .-.|.+|++....-.......+ ......+.|.|+|++++....++ +++|.+|..........
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~----------- 228 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE----------- 228 (346)
T ss_pred EeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE-----------
Confidence 7653 3468999975221111111222 34456788999999998877776 88999999887311110
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCC--ce--EEEeccC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSG--AQ--VAKLDFH 354 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~--~~--~~~~~~~ 354 (409)
.++....-+..-......-.+..++||++|.++.. ...|.+|.+... ++ +.....+
T Consensus 229 -------------------~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 229 -------------------ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred -------------------EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence 01111111100111122234568899999998765 357888887643 21 2222334
Q ss_pred CcceeeeEEecCcCeEEeecCC-CeEEEEecCCC
Q 015301 355 NAPVRDCCWHPIYPMLISSSWD-CNIVRWEIPGI 387 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~ 387 (409)
...-.+..+++++++|+++..| ..|.++..+..
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 4457889999999988888765 46889988653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=118.17 Aligned_cols=233 Identities=19% Similarity=0.199 Sum_probs=143.0
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.+.++|.+... ...... ....+.+..|+|||+.|+..+.+ ..|.+||+.+++.........
T Consensus 199 ~l~i~d~dG~~-~~~l~~---~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLR---SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCC-ceEeec---CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 56677765542 222222 23368889999999999877543 368889988765432221110
Q ss_pred CcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCe--EEEec
Q 015301 140 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSL--CKVWD 213 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~iwd 213 (409)
.....+|+|||+.|+.. +.++ .|+++|+.+++.. .+..+.......+|+ ++++.|+..+ .++. |.++|
T Consensus 263 ----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 263 ----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred ----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 23467899999988764 4455 4888899877643 444455566788999 7777766554 3454 44555
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
+. .+.. ..+..........+|+|||++|+..+. ++ .|.++|+.+..
T Consensus 337 l~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-------------------------- 385 (448)
T PRK04792 337 LA----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-------------------------- 385 (448)
T ss_pred CC----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC--------------------------
Confidence 42 2332 222222223345789999998887655 34 34556665421
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-C--eEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-N--SVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
...+.... ...++.|+|||+.|+..+.+ | .+++++. +++....+..+.+.+...+|+|
T Consensus 386 ---------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 386 ---------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 11111110 01245799999988876654 3 3777786 5666677776677788889987
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-13 Score=117.55 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=145.5
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---CEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---AIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.|.++|.+.. ....... +...+....|+|||+.|+..+.+ ..|.+|++.+++........
T Consensus 180 ~l~~~d~~g~-~~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCC-CceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 4777787654 2233222 33478899999999999877643 36899999887654332211
Q ss_pred CcceeeEEEEEcCCCCeEEEE-EecC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEec
Q 015301 140 EDEFGIFSVKFSTDGQELVAA-GSDN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWD 213 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iwd 213 (409)
..+...+|+|+|+.|+.. ..++ .|+++|+.+++.. .+..+........|+ ++++.|+..+ .+| .|.++|
T Consensus 243 ---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 243 ---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred ---CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEE
Confidence 124468999999988754 3344 6889999887654 354455566778999 7777665554 344 466666
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-C--cEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
+. .+.. ..+...........|+|+|+.++..+.+ + .|.++|+.+...
T Consensus 318 ~~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------------- 367 (430)
T PRK00178 318 VN----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------------- 367 (430)
T ss_pred CC----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------------------------
Confidence 43 3322 2222112233457899999998877653 3 477888766221
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+.... ....+.|+|||+.++..+.+ ..++++++. +.....+..+.+.+...+|+|-
T Consensus 368 ----------~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 368 ----------RILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------EEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 1111100 01145799999999887654 357777774 4444556556667888888873
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=125.80 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=151.8
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC----eEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD----VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++ ++.-++++|+.-+.|.+|+.. .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~----~ 164 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKPH----E 164 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEecc-CcEEEEEeccccccEEEEecc----c
Confidence 444555557778888999999999999888777666533221 1112233 677789999999999999975 2
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
......+.+|.+.|.++.++.||+++++.++|.++++|++.+.+...
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------------------------------
Confidence 22223688999999999999999999999999999999999843221
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeeeEEecCcCeEEeecCCCeE
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
...-+|+ .-+|...+.|+ .++++++|.+.++|+. +++.+..+..|. +.|..++..++...++|++.||.+
T Consensus 212 ~~~fgHs------aRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 212 CTGFGHS------ARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccccccc------ceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 1223344 44566677776 8999999999999976 566666888885 479999999998899999999999
Q ss_pred EEEecCCCcc
Q 015301 380 VRWEIPGIGE 389 (409)
Q Consensus 380 ~iw~~~~~~~ 389 (409)
++|++.....
T Consensus 283 k~~~l~~r~~ 292 (967)
T KOG0974|consen 283 KLWDLNGRGL 292 (967)
T ss_pred hhhhhhcccc
Confidence 9999976543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-11 Score=102.24 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=167.1
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----------CCEEEEEEcCCCccccccceeceeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----------CAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
++|.+.|.++.+.+........ ...+ ++||++.|.++.. +..|.+||..+.+.............
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7899999999865554433322 2334 9999999887765 78999999999876544443221000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-e-cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-S-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
. .......++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-...+ ++.++ +-+.||..
T Consensus 102 ~--------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~--~~~~Dg~~ 169 (352)
T TIGR02658 102 L--------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF--MHCRDGSL 169 (352)
T ss_pred h--------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE--EEeecCce
Confidence 0 011245789999999999876 3 6899999999999998886422 22222222 22222 23345555
Q ss_pred EEecccccccCCcee-ee---eecccccee-EEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRAN-GV---LMGHLEGIT-FIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~-~~---~~~~~~~v~-~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
....+. ..++.. .. +.....++. .-.|.+ +|+++.+... |.|.+.|+........
T Consensus 170 ~~v~~d---~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--------------- 230 (352)
T TIGR02658 170 AKVGYG---TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--------------- 230 (352)
T ss_pred EEEEec---CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec---------------
Confidence 443332 111111 11 000000000 003345 7887777666 9999999765321111
Q ss_pred cccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC----------CCeEEEEEccCCceEEEec
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS----------DNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~ 352 (409)
..+..+..... .........-.+++++++.+++... .+.|.++|..+++.+..+.
T Consensus 231 --------------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 231 --------------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred --------------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 00111100000 0000000112578888988887532 2579999999999999987
Q ss_pred cCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 353 FHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
. ...+..++++||++ +|++.. .++.|.+.|..+++..
T Consensus 297 v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 297 L-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred C-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 3 45889999999999 777665 6788999999877543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-13 Score=115.16 Aligned_cols=287 Identities=10% Similarity=0.113 Sum_probs=195.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee------------eeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK------------IQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.....|++|+....++|+|+.||.++|..+.+... +.....+.+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999999875421 112234568899999999999999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee-eEEcCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~ 186 (409)
.|.+|-+-.+.......... ..+-|.+++|+.+|..+.....||.|.+=.++..+.- +.+++ ..
T Consensus 94 lIiVWmlykgsW~EEMiNnR-------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~ 158 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNR-------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QL 158 (1189)
T ss_pred eEEEEeeecccHHHHHhhCc-------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--he
Confidence 99999998776432222111 1225999999999999999999999988777644321 11222 22
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---ceeee----eeccccceeEEEEc--------CCCCeEEEEeC
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---RANGV----LMGHLEGITFIDSR--------RDGRYFISNGK 251 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~----~~~~~~~v~~~~~~--------~~~~~l~~~~~ 251 (409)
...+.|+ ++...++.+-..|.+.+||........ .+... +......|..+.|. |+...|+++..
T Consensus 159 l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 159 LAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred ccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 3578899 888888888889999999953110000 01000 11111224455553 46678899988
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
.|.+.+..-.+.. .++..-.+ -.+....|+++|..||++
T Consensus 238 nGr~QiMR~eND~---------------------------------~Pvv~dtg--------m~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 238 NGRMQIMRSENDP---------------------------------EPVVVDTG--------MKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred CceehhhhhcCCC---------------------------------CCeEEecc--------cEeecceecCCCcEEEEc
Confidence 9988877544411 11111111 112344688899999998
Q ss_pred eCC---------CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 332 SSD---------NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 332 ~~d---------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|++=++.
T Consensus 277 G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 864 3566665 3678888999888999999998776666555 45666654443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=115.72 Aligned_cols=197 Identities=17% Similarity=0.260 Sum_probs=152.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
|....+.-+.+.++.+..+..+.+||...+............ -....-+-++++.-++++|+.-+.|.+|+....+...
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333444556678888888899999998876443332211110 0122334467788899999999999999987332211
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...+|.+.|.++.++.||.++++.+.|.++++|++++.+... ..-+|+..|..++|. ++ .+
T Consensus 170 ---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~i 231 (967)
T KOG0974|consen 170 ---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--RI 231 (967)
T ss_pred ---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--ee
Confidence 123678899999999999999999999999999999988776 567899999999999 55 89
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
++++.|-+.++|+. .+..+..+.+|. ..+..++..++...+++++.|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999974 556666777776 4689999999999999999999999999865
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-12 Score=111.40 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=143.2
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE---EEecC--CEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV---YASIC--AIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
..|.+.|.+.+. ...+.. ....+..-+|+|||+.++ +...+ ..|.+.++.+++.........
T Consensus 165 ~~l~~~d~dG~~-~~~lt~---~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQ---EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCC-ceEccc---CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 357777776552 222222 223566779999997532 33333 368888888776543332211
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEECCCC---eeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS 207 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg 207 (409)
.....+|+|||+.|+..+. +-.+..|++..+ +.......+.......+|+ |+++.|+..+ .+|
T Consensus 232 -------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g 303 (428)
T PRK01029 232 -------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDG 303 (428)
T ss_pred -------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCC
Confidence 2445799999998887653 223444676653 3333333333445678999 8888766554 567
Q ss_pred eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccccccccccccccccccc
Q 015301 208 LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 208 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+...
T Consensus 304 ~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------------- 363 (428)
T PRK01029 304 RPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------------- 363 (428)
T ss_pred CceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-------------------
Confidence 66666542101 122233344444566788999999988876543 3688999876321
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC---CCeEEEEEccCCceEEEeccCCcceeee
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
..+.... .....+.|+|||+.|+.... ...|+++|+.+++...... ..+.+...
T Consensus 364 ----------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p 420 (428)
T PRK01029 364 ----------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFP 420 (428)
T ss_pred ----------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCc
Confidence 1111110 01234679999998876543 3578899998776544333 45567788
Q ss_pred EEecCc
Q 015301 362 CWHPIY 367 (409)
Q Consensus 362 ~~s~~~ 367 (409)
+|+|-.
T Consensus 421 ~Ws~~~ 426 (428)
T PRK01029 421 SWGAFP 426 (428)
T ss_pred eecCCC
Confidence 898753
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=99.83 Aligned_cols=320 Identities=16% Similarity=0.161 Sum_probs=196.9
Q ss_pred eEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEE-----E--eCCCcEEEEEcCCCeeeeeeeecccccce
Q 015301 15 FSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVA-----A--SQESNIKVYNVDKNWKIQKDIETKALRWT 87 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-----~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 87 (409)
.+.+.+-.++..-+....+..+..|-+-|+...|+|+|+.+|. + ...+.+.+.+.+.++.... .-... .
T Consensus 53 IiFt~~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-TyfGr---~ 128 (668)
T COG4946 53 IIFTCCDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TYFGR---R 128 (668)
T ss_pred EEEEechHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EEecc---c
Confidence 3444444455555667778899999999999999999998886 2 2235588888888844332 22221 2
Q ss_pred EEE-EEeCCCCcEEEEEecCCEE----EEEEcCCCcc--ccccc---------------------------eeceeee--
Q 015301 88 ITD-TSLSPDQRFLVYASICAIV----NIVDVGSSAR--ESLAN---------------------------VTEIHKG-- 131 (409)
Q Consensus 88 v~~-~~~s~~~~~l~~~~~dg~i----~~w~~~~~~~--~~~~~---------------------------~~~~~~~-- 131 (409)
-+. .-|.|||+.|++...-.-. .+|.+..... ..+.- ......+
T Consensus 129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGkl 208 (668)
T COG4946 129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKL 208 (668)
T ss_pred cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceE
Confidence 333 4589999888875422111 1121111100 00000 0000000
Q ss_pred -----------------------------eeeecCCCCcceeeEEEE-------------------EcCCCCeEEEEEec
Q 015301 132 -----------------------------LDFSADGDEDEFGIFSVK-------------------FSTDGQELVAAGSD 163 (409)
Q Consensus 132 -----------------------------~~~~~~~~~~~~~v~~~~-------------------~~~~~~~l~~~~~d 163 (409)
+-|..+. +.-+.+.++. .+.||+.++.. ..
T Consensus 209 Wis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~-eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~ 286 (668)
T COG4946 209 WISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDH-EGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NA 286 (668)
T ss_pred EEEecCCcceeeeeecCCCcCCceEEcceEEEEecc-cCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cC
Confidence 0000000 0011233332 23467776654 46
Q ss_pred CeEEEEECCCCeeeeE-E--cCC-----C---CCeEEEE-EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 164 NFIYVYDLQANKCSLR-I--PAH-----K---SDVNTVC-FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~-~--~~~-----~---~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
|.|+++|.++.+.... + +.. . .+..-+. |++.+|++++..+. |...+.+. ..-.....+|.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~------~~~~~iqv~~~ 359 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP------WDGYSIQVGKK 359 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC------CCCeeEEcCCC
Confidence 8899999877653321 1 100 0 1111122 44567889988875 66777663 22222334577
Q ss_pred cceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
+.|.-..+..+++-++.|..|| .+-++|.++.+ +..+...
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----------------------------------~kr~e~~---- 400 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----------------------------------VKRIEKD---- 400 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCce-----------------------------------EEEeeCC----
Confidence 7788888888888899999998 89999988732 2222222
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC----eEEEEecCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC----NIVRWEIPG 386 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iw~~~~ 386 (409)
...++++..+++|++++++.....+.+.|+.+++....-+...+-|+.+.|||+++++|-+=-+| .|+++|+..
T Consensus 401 --lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 401 --LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred --ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 24567778999999999999999999999999998776677788999999999999999875554 688999877
Q ss_pred Cc
Q 015301 387 IG 388 (409)
Q Consensus 387 ~~ 388 (409)
++
T Consensus 479 ~K 480 (668)
T COG4946 479 GK 480 (668)
T ss_pred Ce
Confidence 54
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=112.80 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=168.9
Q ss_pred cccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 83 ALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+...-+.|..+|||+|+. +|...-.|++||+.+-........... .|.-.-.+.|-..++.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae---------------~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE---------------VVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc---------------ceeEEEeccchhhheEee
Confidence 3445678899999999865 566788999999987654332222111 233334444544555556
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|..|.+...-.......++ ..-.+++++.++..+++.|+. ..|+-+++ ..+..+..+....+.++++..++
T Consensus 114 ~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg-~evYRlNL----EqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSG-SEVYRLNL----EQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred cCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecC-cceEEEEc----cccccccccccccccceeeeecC
Confidence 67777655432211112222 334678888666666666554 45666674 48888888888889999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
...+|++|+.+|.|..||.+........... .....+.. ......+.++.|
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~----------------------------~~v~s~pg-~~~~~svTal~F 236 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA----------------------------SSVNSHPG-GDAAPSVTALKF 236 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecc----------------------------cccCCCcc-ccccCcceEEEe
Confidence 9999999999999999999874432222110 00111111 111233567789
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEec-cCCcceeeeEEecC--cCeEEeecCCCeEEEEecCCCcc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPI--YPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+. ...|+|.. ...++|||-..++.
T Consensus 237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 237 RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKP 306 (703)
T ss_pred cCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCc
Confidence 8899999999999999999999998876553 23458999999776 34677663 46899999887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-13 Score=110.19 Aligned_cols=194 Identities=17% Similarity=0.206 Sum_probs=153.5
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe------CC--------------CCcEEEEEecCCE
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL------SP--------------DQRFLVYASICAI 108 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~------s~--------------~~~~l~~~~~dg~ 108 (409)
.|-..++|....||.+++|+...++............+..++..| +| +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455688999999999999999988555444433333444555555 22 3346778888999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
|.+|++..++...... ...|.++|.++.++.+-..|.+++.|+.+..|+....+...........+.
T Consensus 82 v~~ys~~~g~it~~~s-------------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLS-------------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEEEecCCeEEEEEe-------------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 9999998887543322 235677899999999999999999999999999999999999998899999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC-----CCeEEEEe-CCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD-----GRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 262 (409)
+++++ +++..+++++ +.|++||+ +..+.+..+.+|.++|+++.|..+ |.+++++. .+..+.+|-++.
T Consensus 149 sl~is-~D~~~l~~as--~~ik~~~~----~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCIS-PDGKILLTAS--RQIKVLDI----ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEc-CCCCEEEecc--ceEEEEEc----cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999 8899999887 68999996 489999999999999999999776 66666543 355677887655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-12 Score=113.03 Aligned_cols=193 Identities=18% Similarity=0.109 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCC--eEEEeccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDS--LCKVWDRRCF 217 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~ 217 (409)
.+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.+++|+ ++++.|+ +.+.++ .|++||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 47788999999999887654 479999998886543 33355667788999 7777665 455554 47788864
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.+ ....+..+........|+|+|+.|+..+. ++ .|.++|+.+..
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 23333344444556789999998876654 33 46666665421
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEE
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI 371 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 371 (409)
...+..+. .....+.++|+|++|+.++.++ .|.+||+.++.. ..+... .......|+||+++|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123567899999999988776 899999987654 333322 2345678999999887
Q ss_pred eecCCC---eEEEEecCC
Q 015301 372 SSSWDC---NIVRWEIPG 386 (409)
Q Consensus 372 s~~~dg---~i~iw~~~~ 386 (409)
..+.++ .+++.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 766553 455666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-12 Score=112.11 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=130.1
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecC
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SIC 106 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 106 (409)
.....+..+...+....|||||+.|+..+.+ ..|.+|+++++.. .......+ .+....|+|||+.|+.. ..+
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g---~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEG---LNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCC---CcCCeEECCCCCEEEEEEccC
Confidence 4456677888899999999999999876643 3689999988743 22222222 45568999999988754 444
Q ss_pred C--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c--CeEEEEECCCCeeeeEEc
Q 015301 107 A--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D--NFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 107 g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~v~d~~~~~~~~~~~ 181 (409)
| .|.+||+.+++....... ........|+|+|+.|+..+. + ..|+++|+.+++......
T Consensus 265 g~~~Iy~~d~~~~~~~~lt~~----------------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 265 GNPEIYVMDLASRQLSRVTNH----------------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CCceEEEEECCCCCeEEcccC----------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 4 688889987754322211 112455789999998877664 2 368888888776443222
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCC-C--eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-C--cE
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDD-S--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-Q--TT 255 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i 255 (409)
.........|+ ++++.|+..+.+ + .|.++|+. .+.. ..+.. ........|+|+|+.++..+.+ + .+
T Consensus 329 -~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~----tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 329 -VGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQ----RGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -CCCCccceEEC-CCCCEEEEEEccCCceEEEEEECC----CCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 22333457898 788888776543 3 47778864 2222 22221 1222356899999988876653 3 45
Q ss_pred EEeeCC
Q 015301 256 KLWDIR 261 (409)
Q Consensus 256 ~iwd~~ 261 (409)
.++++.
T Consensus 401 ~~~~~~ 406 (430)
T PRK00178 401 MLVSIN 406 (430)
T ss_pred EEEECC
Confidence 566654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=132.77 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=166.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.++.=+|...+.++|+.||.+++|....+........... ..|+.+.|+.+|+.+..+..||.+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------------s~vtr~~f~~qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------------SRVTRSRFNHQGNKFGIVDGDGDL 2275 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--------------chhhhhhhcccCCceeeeccCCce
Confidence 588888899999999999999999999987765444333221 369999999999999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.+|... .++....+.|.....++.|. . ..+++++ .++.+.+||.- ..+........|.+.++++++.|..
T Consensus 2276 ~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl---~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTL---LPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred eecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcc---cCcccceeeeecCCCceEEEEcCcc
Confidence 999986 66777788999999999998 3 6677754 57889999964 2222223337899999999999999
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
+.|++|+.+|.|++||++.. +.++.+.. +.
T Consensus 2349 qllisggr~G~v~l~D~rqr----------------------------------ql~h~~~~---------------~~- 2378 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQR----------------------------------QLRHTFQA---------------LD- 2378 (2439)
T ss_pred eEEEecCCcCcEEEeehHHH----------------------------------HHHHHhhh---------------hh-
Confidence 99999999999999999872 23333332 11
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEecc---CCcc--eeeeEEe-cCcCeEEeecCCCe
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAP--VRDCCWH-PIYPMLISSSWDCN 378 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~--v~~~~~s-~~~~~l~s~~~dg~ 378 (409)
...++++|+..|.++||++.....+.++.. |.+- ....... -....|++|+.||+
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 257899999999999999988877777652 2211 1111111 12346777777764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-13 Score=104.35 Aligned_cols=274 Identities=16% Similarity=0.241 Sum_probs=172.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee----eeeeeecCCCCcceeeEEEEEcCCC--CeEEEE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH----KGLDFSADGDEDEFGIFSVKFSTDG--QELVAA 160 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 160 (409)
-|.++.|...|.+|++|..+|.|.++.-...... ........ ..+.+... -.-...|..+.|.+++ ..++..
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkS-leieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKS-LEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhh-hhhhhhhhhceecCCCCccEEEEe
Confidence 6899999999999999999999999865433221 11111000 00000000 0123358899999865 457777
Q ss_pred EecCeEEEEECCCCeeee-----------------------------------EE-cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 161 GSDNFIYVYDLQANKCSL-----------------------------------RI-PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+.|.+|++|-+....... .+ .+|+..|.++.++ .+...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-
Confidence 889999999875321100 01 2688889999999 788777775
Q ss_pred CCCeEEEecccccccCCceeee----eeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGV----LMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.|=.|-+|++.........+-. +..-..-|++..|+|. .+.++-.+..|+|++-|++....--..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h---------- 252 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH---------- 252 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch----------
Confidence 5678999997632222222111 1122356888899995 567788888999999999852110000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc-cCCceEEEeccCCc--
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL-VSGAQVAKLDFHNA-- 356 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~~~~-- 356 (409)
...+..+... ........++..+..+.|+++|+++++-+. -+|++||+ ...+++.+++.|..
T Consensus 253 ---------sKlfEepedp-----~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 253 ---------SKLFEEPEDP-----SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred ---------hhhhccccCC-----cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 0000000000 001111233345556789999999998643 57999999 45677777766532
Q ss_pred ----------ce---eeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 357 ----------PV---RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 357 ----------~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.| ..++|+.++.+++||+....++++++..+..
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 22 3478999999999999999999999765543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=99.53 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=138.9
Q ss_pred CCeEEEEECC---CCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccc---eEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 41 SRVYTSQFSN---DGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRW---TITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 41 ~~v~~~~~s~---~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+..+.|+- +|. .|+-+-.+|.|.++..+..+....+.......- ...++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455666642 455 456677789999998775544333332222211 245778999999999999999988655
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECC-CCeeeeE-EcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQ-ANKCSLR-IPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-~~~~~~~-~~~~~~~v~~~ 190 (409)
.......... ..+.|..+++.+.|+. +.+.+.+|+.|+.+..||++ .++.+.. .+.|...|.++
T Consensus 150 ~t~~~le~vq-------------~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI 216 (339)
T KOG0280|consen 150 ETEMVLEKVQ-------------TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSI 216 (339)
T ss_pred cceeeeeecc-------------cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEE
Confidence 5444332211 1235666888899986 45678999999999999998 3344433 46699999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC--CeEEEEeCCCcEEEeeCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--RYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 262 (409)
.-+||.+.++++|+.|-.|++||.|. -++++..- .-.+.|..+..+|.- ..|+++-.+| .+|-+...
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhc---ccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 99999999999999999999999873 23333322 234789999999853 2344443444 67777665
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-12 Score=110.40 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=125.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCC
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICA 107 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 107 (409)
....+..+...+.+..|||||+.|+..+.+ ..|++||+.+++. .......+ .....+|+|||+.|+.. +.+|
T Consensus 209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPG---INGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCC---CcCCeeECCCCCEEEEEEeCCC
Confidence 345667778889999999999999876543 2588899887743 22222222 34568999999988764 4555
Q ss_pred --EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c--CeEEEEECCCCeeeeEEcC
Q 015301 108 --IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D--NFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 108 --~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~v~d~~~~~~~~~~~~ 182 (409)
.|.++|+.+++....... .......+|+|||+.|+..+. + ..|+++|+.+++... +..
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~----------------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRH----------------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CeEEEEEECCCCCeEECccC----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 477788877654322211 112566789999998877654 2 357778887776543 222
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeC-CCe--EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-Cc--EE
Q 015301 183 HKSDVNTVCFADETGHLIFSGSD-DSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QT--TK 256 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~ 256 (409)
........+|+ ++++.|+..+. ++. |.++|+. .+.. ..+... .......|+|+|+.|+....+ +. +.
T Consensus 348 ~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~----~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 348 EGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLE----TGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECC----CCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 22233457898 78877776554 444 4445643 2322 222221 122345799999988776543 33 55
Q ss_pred EeeCC
Q 015301 257 LWDIR 261 (409)
Q Consensus 257 iwd~~ 261 (409)
+++..
T Consensus 421 ~~~~~ 425 (448)
T PRK04792 421 AVSID 425 (448)
T ss_pred EEECC
Confidence 66653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-12 Score=108.06 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=127.3
Q ss_pred cCCCceeecCCCCeEEEEECCCCCEEE---EEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 30 VNGPWKVDGMNSRVYTSQFSNDGSFFV---AASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 30 ~~~~~~l~~h~~~v~~~~~s~~~~~l~---t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+..+......+..-+|||||+.++ +...+| .|.+.++.+++. ..+....+ .....+|+|||+.|+..+
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~g---~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQG---NQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCCC---CccceEECCCCCEEEEEE
Confidence 344556766777788899999997532 443343 577778877643 23333333 355689999999988765
Q ss_pred c-CC----EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCe--EEEEECCC-Ce
Q 015301 105 I-CA----IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNF--IYVYDLQA-NK 175 (409)
Q Consensus 105 ~-dg----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~-~~ 175 (409)
. +| .+..|++..+.......+... ........+|+|||+.|+..+. +|. |+++++.. +.
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 3 22 344466654321111111100 0012356799999998887663 554 55555532 23
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
....+..+...+....|+ |+++.|+..+.+ ..|.+||+. .+.. ..+......+....|+|||+.|+....
T Consensus 318 ~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 344454455667889999 888888765543 368899964 3333 233333345677899999998875443
Q ss_pred --CCcEEEeeCCC
Q 015301 252 --DQTTKLWDIRK 262 (409)
Q Consensus 252 --dg~i~iwd~~~ 262 (409)
...|.++|+..
T Consensus 392 ~g~~~L~~vdl~~ 404 (428)
T PRK01029 392 SNESELYLISLIT 404 (428)
T ss_pred CCCceEEEEECCC
Confidence 34677888765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-14 Score=130.67 Aligned_cols=193 Identities=10% Similarity=0.190 Sum_probs=148.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+..|-..|.++.=+|...+.+||+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecc
Confidence 35556668889999999999999999999999999988877665544433 5899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCC--e-eeeEEcCCCCCe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQAN--K-CSLRIPAHKSDV 187 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~--~-~~~~~~~~~~~v 187 (409)
....-. .. ...|......+.|-. ..+++++. ++.+.+||.--. . .+. ..|.+.+
T Consensus 2280 ~~pk~~----~s------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2280 ASPKPY----TS------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred cCCcce----ec------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence 872111 11 123444577777754 45666654 689999996422 2 222 7899999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+++++. |...+|++|+.+|.|++||+| ..+..+.+.. +. ...++++++..|.++||++...
T Consensus 2340 T~l~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2340 TVLAYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eEEEEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999 889999999999999999987 4444443332 34 5678999999999999999874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-11 Score=102.22 Aligned_cols=293 Identities=18% Similarity=0.249 Sum_probs=179.8
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecC-------------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVN-------------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
-.+|.|||-|.|+.+-....++.-.+.. ....+..-...=++..|++|..+.|=- ..+.+.+|+..
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~ 154 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLG 154 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecC
Confidence 4578899999987764433222211111 111111111111688999988754432 24579999998
Q ss_pred CCeeeeeeeecccccceEEEEEeCCCC--cEEEE-----EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 71 KNWKIQKDIETKALRWTITDTSLSPDQ--RFLVY-----ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
+...+...+ |...|+.+.+||.+ ..+|+ .+.-+.+++|...................
T Consensus 155 ~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka------------ 218 (566)
T KOG2315|consen 155 SFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA------------ 218 (566)
T ss_pred Cccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc------------
Confidence 754433333 34469999999873 34443 24566899998874333222222221111
Q ss_pred eeEEEEEcCCCCeE-EEEEe-----------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE--eeCCCeE
Q 015301 144 GIFSVKFSTDGQEL-VAAGS-----------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS--GSDDSLC 209 (409)
Q Consensus 144 ~v~~~~~~~~~~~l-~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i 209 (409)
.=..+.|++-|.-| +.++. ..++++++++.......+. ..++|.++.|+ +++..+++ |-.-..+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~-~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWS-PSGREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEEC-CCCCEEEEEEecccceE
Confidence 23457788766533 22222 2368888887444444443 47999999999 67765554 3456789
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.|||++ +..+..+ ..++-+++-|+|.|++++.++- .|.|.+||+.+.+.
T Consensus 297 tifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~--------------------- 348 (566)
T KOG2315|consen 297 TIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL--------------------- 348 (566)
T ss_pred EEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh---------------------
Confidence 999974 4454444 4577788999999999988876 47999999988332
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC------CCeEEEEEccCCceEEEeccCCcceee
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------DNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
+..+.... ..-.+|+|||+++++++. |+.++||+. +|..+....-. .....
T Consensus 349 -------------i~~~~a~~--------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~-sEL~q 405 (566)
T KOG2315|consen 349 -------------IAKFKAAN--------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFK-SELLQ 405 (566)
T ss_pred -------------ccccccCC--------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhh-HhHhh
Confidence 33332222 112369999999999875 678999997 67666544322 25677
Q ss_pred eEEecC
Q 015301 361 CCWHPI 366 (409)
Q Consensus 361 ~~~s~~ 366 (409)
+.|-|-
T Consensus 406 v~W~P~ 411 (566)
T KOG2315|consen 406 VEWRPF 411 (566)
T ss_pred eeeeec
Confidence 777753
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=108.74 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=145.7
Q ss_pred CCCCeEEEEEecCeEEEEECCCCeeeeEEcC---CCCCeEEEEEe-------------------CCCCcEEEEeeCCCeE
Q 015301 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPA---HKSDVNTVCFA-------------------DETGHLIFSGSDDSLC 209 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~-------------------~~~~~~l~~~~~dg~i 209 (409)
|...++|....||.+++||...++..+.+.. -.+..++.+|. ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567889999999999999999987776632 23344444443 1234578888899999
Q ss_pred EEecccccccCCceeeeee--ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.+|++. .++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 83 ~~ys~~----~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~------------------------- 133 (541)
T KOG4547|consen 83 LLYSVA----GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE------------------------- 133 (541)
T ss_pred EEEEec----CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-------------------------
Confidence 999964 555555544 6899999999999999999999999999999877
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecC-
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI- 366 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~- 366 (409)
...++.+.... ....+.+++|||+.+++++ +.|.+||+++++.+.++.+|.++|.+++|-.+
T Consensus 134 ---------~~~~~~~~~~~------~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 134 ---------KVIIRIWKEQK------PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ---------ceeeeeeccCC------CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 34444454444 2234567899999999986 57999999999999999999999999999877
Q ss_pred ----cCeE-EeecCCCeEEEEecCC
Q 015301 367 ----YPML-ISSSWDCNIVRWEIPG 386 (409)
Q Consensus 367 ----~~~l-~s~~~dg~i~iw~~~~ 386 (409)
|.++ .+...+..+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 5544 4455667788898765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-11 Score=93.85 Aligned_cols=247 Identities=13% Similarity=0.175 Sum_probs=159.5
Q ss_pred cceeeEEecCceeEeeccce----EEEEee--ecCCCceeecC----CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC
Q 015301 3 VGREVNYSGRGRFSAADSCH----VLSRYL--PVNGPWKVDGM----NSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDK 71 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~----~~~~~~--~~~~~~~l~~h----~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~ 71 (409)
++.-|+++|+++.+.+.... .+..+. +.....++.++ ..+-+.++++++|++|+++.. -|.|.++-+..
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 45678999999765553322 222222 22133333322 133388999999999999875 47899999976
Q ss_pred Ceeeeeeeecccccce----------EEEEEeCCCCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 72 NWKIQKDIETKALRWT----------ITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
...+........|.+. +....+.|++++|++... ...|.+|++..+.........- .
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------------~ 188 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------------K 188 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------------C
Confidence 4344433333333333 888999999999998863 3468999999776543332221 1
Q ss_pred cceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCC--e--eeeEE---c---CCCCCeEEEEEeCCCCcEEEEeeC-CCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN--K--CSLRI---P---AHKSDVNTVCFADETGHLIFSGSD-DSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~--~--~~~~~---~---~~~~~v~~~~~~~~~~~~l~~~~~-dg~ 208 (409)
...+...+.|+|++++..+.++ +++|.+|..... + .++.+ + .......++..+ ++|++|+++.. ...
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-~dGrFLYasNRg~ds 267 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-PDGRFLYASNRGHDS 267 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-CCCCEEEEecCCCCe
Confidence 1235888999999998877766 899999998763 2 12222 1 123456788888 89999998764 236
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-CcEEEeeCCC
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QTTKLWDIRK 262 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 262 (409)
|.+|.+...............+....+...+++.+++|+++..+ ..|.+|....
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 77777652211122222333344446888999999999998874 4688888765
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=100.59 Aligned_cols=270 Identities=18% Similarity=0.253 Sum_probs=172.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eeeeeecccc------------cceEEEEEeCCCC--cEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--IQKDIETKAL------------RWTITDTSLSPDQ--RFLVY 102 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~------------~~~v~~~~~s~~~--~~l~~ 102 (409)
....|+++.|...|.||+||...|.|.+|.-+.... .....+.++| ...|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346799999999999999999999999998654321 1111122222 2368888887653 35666
Q ss_pred EecCCEEEEEEcCCCccccccc-------------------------eeceeeeeeeec---CCCCcceeeEEEEEcCCC
Q 015301 103 ASICAIVNIVDVGSSARESLAN-------------------------VTEIHKGLDFSA---DGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~-------------------------~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~ 154 (409)
.+.|.+|++|.+.......... ......-+...+ ....|..-+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999987652211110 000000011111 124688889999999998
Q ss_pred CeEEEEEecCeEEEEECCCCeeee---EEcCCC-----CCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc--C----
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSL---RIPAHK-----SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS--K---- 220 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~---- 220 (409)
..++++ .|-.|.+|+++-..... -++.|. .-|++..|+|...+.+.-.+..|.|++-|+|...- .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 46789999986433222 233343 45788999988888888889999999999983210 0
Q ss_pred ------CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 221 ------GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 221 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
+.....+.+-...|..+.|+++|+++++-..- ++++||++...
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k------------------------------ 312 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAK------------------------------ 312 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccccc------------------------------
Confidence 01111122334567889999999999876554 79999998743
Q ss_pred cCccceeeeecccce---------eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 295 PHDQSLATYKGHSVL---------RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.++.+...|... ...+-..|...||.|.+.+++|+.....-+|-..
T Consensus 313 ---~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 313 ---NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ---CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 223333222211 1112233556788888899999888777777643
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=118.62 Aligned_cols=303 Identities=17% Similarity=0.279 Sum_probs=194.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC--cEEEEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ--RFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~~w~~~~ 116 (409)
-.+.+.++..+|.|+-+|.++.-| +.+-|++........+. +...+.|..+.|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 346788899999999999998877 77788877644433332 2234567888898753 4555555556666898865
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~ 194 (409)
.......-.. .+|...|+.+.|+|+. ..+++++.|..+..||+++.. ++.....-...-..++|+-
T Consensus 101 ss~~aIef~l------------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 101 SSSNAIEFVL------------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CCccceEEEE------------ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 4432222221 2566689999999954 467888889999999998764 3444444445668899996
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
.+++.+++ +....|.+||+| ....++..+++|...|..+.|.. ....+.+.+.|++|+.||..+...........
T Consensus 169 k~p~vlas-shg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cCcchhhh-ccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 66666654 566789999987 45667788888999999998865 23468889999999999987743322221111
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC-CceEEEec
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS-GAQVAKLD 352 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~ 352 (409)
.-..|..+.+.+.. +..+... ..+..+..-.-+..-..|+..+ .+++.++.
T Consensus 245 ~~piw~~r~~Pfg~---------g~~~mp~-------------------~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGE---------GYCIMPM-------------------VGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred cCcceeccccccCc---------eeEeccc-------------------cCCeeeeeccccchhhhhccccCCcceeeec
Confidence 11112111111110 0000000 0111111111122234455444 36799999
Q ss_pred cCCcceeeeEEecC--------cC--eEEeecCCCeEEEEecCCC
Q 015301 353 FHNAPVRDCCWHPI--------YP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 ~~~~~v~~~~~s~~--------~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
||...|....|-.. .+ .|+|-+.|..+++|.+.+.
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 99999988777532 22 7999999999999988653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-12 Score=109.31 Aligned_cols=376 Identities=11% Similarity=0.062 Sum_probs=215.4
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCC------------CEEEEEeCCCcEEEEEcCC
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDG------------SFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~------------~~l~t~~~d~~i~vw~~~~ 71 (409)
.++-|+|.|.+... ++...+.+....+..+.+..|...|+.+.|.|-. -++|++...|.|.+||...
T Consensus 19 ~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 19 NAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 35678888877554 5556667777777778899999999999998732 2567777889999999987
Q ss_pred CeeeeeeeecccccceEEEEEeCC---CC-cEEEEEecCCEEEEEEcCCCccccccceeceee-eeeeecCCC-------
Q 015301 72 NWKIQKDIETKALRWTITDTSLSP---DQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHK-GLDFSADGD------- 139 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 139 (409)
...+.. ...+..++..++|-+ +. ..|++-.....+.+|+..+++...........- .+.+.+...
T Consensus 99 ~s~~~~---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 99 ASVINW---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhh---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 644333 344555888999866 33 466666778899999998887543322211110 011111110
Q ss_pred -------------------Cccee---------------------------------eEEEEEcCCCCeEEEEEecCeEE
Q 015301 140 -------------------EDEFG---------------------------------IFSVKFSTDGQELVAAGSDNFIY 167 (409)
Q Consensus 140 -------------------~~~~~---------------------------------v~~~~~~~~~~~l~~~~~d~~i~ 167 (409)
++... ...++|+|.-+.++.......+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 00000 12335566555555555667788
Q ss_pred EEECCCCeeeeEEcCCCCCeEEEEEeC-CCCcEEEEeeCCCeEEEecccccccCC------------ceeeeeecc-ccc
Q 015301 168 VYDLQANKCSLRIPAHKSDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKG------------RANGVLMGH-LEG 233 (409)
Q Consensus 168 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~-~~~ 233 (409)
++|++-..++....-..+.+.-+.+.| +..+.|++...||.+.+|-.+...... .+...+..- +..
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r 335 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR 335 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence 899887777777765566666667764 456789999999999999865211110 011111100 011
Q ss_pred eeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccc--cccccccccccccc-------eeccccCccceeee
Q 015301 234 ITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD--YDWDYRWMEYPSYA-------RRLKHPHDQSLATY 303 (409)
Q Consensus 234 v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 303 (409)
+......|. ...++.--.+|.+.+|.++++............ ..+++......-.. ..-.++.+......
T Consensus 336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 336 PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRM 415 (1062)
T ss_pred cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeec
Confidence 111222332 444555556888999999864433222111111 11111110000000 00011111111111
Q ss_pred ecccceeeeeEEEEeeeecCC-------CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEe----
Q 015301 304 KGHSVLRTLIRCYFSPEYSTA-------QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLIS---- 372 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---- 372 (409)
..-+.... . .-.|. -.++|.|+..|+|.++|+.++.....+..|...|.++.|-...+++-.
T Consensus 416 ~p~p~~t~----~---~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~ 488 (1062)
T KOG1912|consen 416 RPMPELTK----V---ENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSH 488 (1062)
T ss_pred ccCcccce----e---ecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecc
Confidence 11000000 0 00111 137899999999999999999999999999999999999766553321
Q ss_pred -----ecCCCeEEEEecCCCccc
Q 015301 373 -----SSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 373 -----~~~dg~i~iw~~~~~~~~ 390 (409)
++.-+.+.+-|++++...
T Consensus 489 ~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 489 VNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ccccccceeeeEEEEEccccccc
Confidence 222346778888887554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-10 Score=95.38 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=115.4
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQES-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
.....+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ .......- +.|.++..+|+|++++++.....+.+
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l---g~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL---GNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc---cceEEEEEcCCCcEEEEEcCceEEEE
Confidence 334458889999999998888999999998 89999999884 33333333 37999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.|++++......+... +-|+.+.|+|+++++|-+--+ ..|+++|+.+++...... ..+.=
T Consensus 428 ididngnv~~idkS~~---------------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D 491 (668)
T COG4946 428 IDIDNGNVRLIDKSEY---------------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD 491 (668)
T ss_pred EEecCCCeeEeccccc---------------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccccc
Confidence 9999988654433222 249999999999999987554 479999999888654432 33333
Q ss_pred EEEEEeCCCCcEEEEee
Q 015301 188 NTVCFADETGHLIFSGS 204 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~ 204 (409)
.+-+|. +++++|.--+
T Consensus 492 fsPaFD-~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFD-PDGRYLYFLS 507 (668)
T ss_pred cCcccC-CCCcEEEEEe
Confidence 566787 7888776654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=113.91 Aligned_cols=262 Identities=10% Similarity=0.076 Sum_probs=176.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
...++.|+.+..++|+|+.||.+++..+.+...............+......++|...|.-+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 68899999999999999999999999998776554444434445556666778999999999999999999999999999
Q ss_pred EEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 167 YVYDLQANKCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 167 ~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.+|-+-.+.....+ ....+-|.+++|+ .+|..++....||.|.+=.+. +..+....-.......+.|++|.+
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvd-----GNRIwgKeLkg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVD-----GNRIWGKELKGQLLAHVLWSEDLE 169 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeec-----cceecchhcchheccceeecccHH
Confidence 99999887655433 2356778999999 999999999999998776643 221111111112344688999999
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
.++.+-..|.+.+||....-............ .......+..+....-... .-...-||
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------------tg~~s~~~~kia~i~w~~g--------~~~~v~pd 228 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNG-------------TGIFSNFPTKIAEIEWNTG--------PYQPVPPD 228 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEee-------------eeeecCCCccccceeeccC--------ccccCCCC
Confidence 99988899999999976522111100000000 0000000000000000000 00013457
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
...|+++..+|.+.|..-.+......+. ..-.|....|+++|..|+.+|.|
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 8899999999999988765543322332 22578899999999999999865
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-10 Score=107.06 Aligned_cols=329 Identities=14% Similarity=0.130 Sum_probs=185.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVY----NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
..+.|.++.|-++...++.+..+|.|.+. +.... .+.. ....+..|.+++||||+..|+.++.++++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 34789999999999999999999999999 44433 2222 1223447999999999999999999998877643
Q ss_pred CCCccccccce-------------eceeeeeeeecCC-----------------CC---cceeeEEEEEcCCCCeEEEEE
Q 015301 115 GSSARESLANV-------------TEIHKGLDFSADG-----------------DE---DEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 115 ~~~~~~~~~~~-------------~~~~~~~~~~~~~-----------------~~---~~~~v~~~~~~~~~~~l~~~~ 161 (409)
. .+....... .-..+..+|.+.. .+ ....-..++|-.||.++|+.+
T Consensus 150 ~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 D-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred c-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 2 100000000 0000000010000 00 222466789999999999887
Q ss_pred e---c---CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEecccccccCCceeeeeecccc
Q 015301 162 S---D---NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 162 ~---d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
- . ..++||+-+ |+...+-..-.+--.+++|- |.|++||+.-. ...|.+|.-. ....+.....+.....
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCc
Confidence 5 2 578999965 66554444333444678998 89999998764 3457777632 1111222222223456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc-cceeeeecccceee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD-QSLATYKGHSVLRT 311 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 311 (409)
.|..+.|++|+..|+....|. |.+|-..+..-.....-..... .......+++.. ..+..+... ....
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~---------~~~~~~~Wdpe~p~~L~v~t~~-g~~~ 374 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS---------ESVNFVKWDPEKPLRLHVLTSN-GQYE 374 (928)
T ss_pred eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC---------CCCCceEECCCCCCEEEEEecC-CcEE
Confidence 789999999999999987665 9999887733111110000000 000001111111 111111110 1112
Q ss_pred eeEEEEeeeecC----CCCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 312 LIRCYFSPEYST----AQKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 312 ~~~~~~~~~~s~----~~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
.....|..+.++ +..-++..-....+.+-.++... ....+. ...+|.+++|++++..+++-..||.|.+|
T Consensus 375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIY 453 (928)
T ss_pred EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence 222333333332 11112222122345555544332 123333 35789999999998888888899999999
Q ss_pred ecCCC
Q 015301 383 EIPGI 387 (409)
Q Consensus 383 ~~~~~ 387 (409)
.....
T Consensus 454 ~~~~~ 458 (928)
T PF04762_consen 454 EWDLK 458 (928)
T ss_pred EecCC
Confidence 86554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-11 Score=98.79 Aligned_cols=278 Identities=14% Similarity=0.136 Sum_probs=176.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-----------CCEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-----------CAIVNI 111 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~~ 111 (409)
=+-+.|||.|.||+|--.-| |.+|--++-..+++. .|. .|.-+.|||..+||++=+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999998877 899976554333332 233 4889999999999998652 257999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
||+.++.............. .-.-+.||.|++++|.-.. ..|.||+..+..++-.-...-..|....
T Consensus 287 WDI~tG~lkrsF~~~~~~~~------------~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYL------------KWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred EEccccchhcceeccCCCcc------------ccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence 99999987665554311110 1223689999999988766 5699999877554433233456788899
Q ss_pred EeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC----------CCcEE
Q 015301 192 FADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----------DQTTK 256 (409)
Q Consensus 192 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~ 256 (409)
|+ |.+++||-=... ..+.+-.+ .....++...-++-.=..+-|..+|.+|+.--. -..+.
T Consensus 354 ws-P~~~llAYwtpe~~~~parvtL~ev----Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 354 WS-PTSNLLAYWTPETNNIPARVTLMEV----PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred cC-CCcceEEEEcccccCCcceEEEEec----CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 99 667777643221 22344442 244444444444433345667788888765321 11233
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC--
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-- 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-- 334 (409)
|+.++... -++... .....+..-+|.|.|..+++-+.+
T Consensus 429 IfrireKd---------------------------------Ipve~v-------elke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 429 IFRIREKD---------------------------------IPVEVV-------ELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred EEEeeccC---------------------------------CCceee-------ecchheeeeeeccCCCeEEEEEcccc
Confidence 33333311 111111 122344556788888887766543
Q ss_pred -CeEEEEEccC-C---ceEEEeccCCcceeeeEEecCcCeEEee---cCCCeEEEEecCC
Q 015301 335 -NSVYIYDLVS-G---AQVAKLDFHNAPVRDCCWHPIYPMLISS---SWDCNIVRWEIPG 386 (409)
Q Consensus 335 -g~v~i~d~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~i~iw~~~~ 386 (409)
.++.+|.+++ . +.+..+. ....+.+.|+|.|++++.+ |..|.+.++|++-
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 5789998873 2 2334443 3567889999999977765 4678999999873
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=95.68 Aligned_cols=287 Identities=13% Similarity=0.077 Sum_probs=181.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----- 106 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 106 (409)
....+..-.-++..+.|||.|.+|++....| |.+|.......+.... |. .|..+.|+|.+++|.+=+..
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccCh
Confidence 3344555677899999999999999887765 9999988765333321 22 58999999999999985533
Q ss_pred ----------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 107 ----------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 107 ----------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
..+.+||..++............. -.+ -+.|+.+.++++-- ....+.|+++ ++.
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-------------~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-------------LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcc-------------cccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 348999999887655444332210 122 57788888776654 3457999997 333
Q ss_pred ee-eEEcC-CCCCeEEEEEeCC-CCcEEEE-----eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 176 CS-LRIPA-HKSDVNTVCFADE-TGHLIFS-----GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 176 ~~-~~~~~-~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
.. ..+.. ....|....|+|. ++..|+. .+..+.+++|.+. .+..+....-....-..+.|.+.|++|+
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp----~~s~l~tk~lfk~~~~qLkW~~~g~~ll 238 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP----KNSVLVTKNLFKVSGVQLKWQVLGKYLL 238 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc----CCCeeeeeeeEeecccEEEEecCCceEE
Confidence 21 11111 1356788888864 4445543 4567889999964 4444333332333345677889888776
Q ss_pred EEe-----------CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 248 SNG-----------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 248 ~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+-- ....+.+++++...+ .... .....+
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----------------------------------~V~~------~~~~pV 277 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSI-----------------------------------PVEK------DLKDPV 277 (561)
T ss_pred EEEEEeeecccceeccceEEEEeeccccc-----------------------------------ceec------cccccc
Confidence 432 123456666553211 1110 111345
Q ss_pred EeeeecCCCCEEEEEe--CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC---CeEEEEecCCC
Q 015301 317 FSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD---CNIVRWEIPGI 387 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 387 (409)
.+.+|.|.++.+++.+ .+-.+.++|++.. ....+ ....=+.+.|+|.+++++.++-| |.+-+|+....
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 5667888887776654 6788999998765 43333 34455667888888888887655 67888887654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-09 Score=90.50 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=143.9
Q ss_pred ECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCCcEEEEEe-c-CCEEEE
Q 015301 48 FSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQRFLVYAS-I-CAIVNI 111 (409)
Q Consensus 48 ~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~-dg~i~~ 111 (409)
+||||+.|+++.. +..|.+||..+.+....+..... .......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999877655 68899999999866655432211 012344789999999999876 3 689999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-Ceee-eE---EcCCCCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCS-LR---IPAHKSD 186 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~-~~---~~~~~~~ 186 (409)
.|+.+++.......... ..-...+++... +-+.||......+.+ ++.. .. +.....+
T Consensus 133 vD~~~~kvv~ei~vp~~----------------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC----------------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EECCCCcEEEEEeCCCC----------------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 99999886544433221 111112222211 112234333322221 1111 11 1110000
Q ss_pred eE-EEEEeCCCCcEEEEeeCCCeEEEeccccccc-CCceeeeee-------ccccceeEEEEcCCCCeEEEEe-------
Q 015301 187 VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLM-------GHLEGITFIDSRRDGRYFISNG------- 250 (409)
Q Consensus 187 v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~------- 250 (409)
+. .-.|.+.++.++++..+ |+|.+.|+..... .......+. -..+...-++++++++.+++..
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 00 00445447888877666 9999999642111 111111111 0233445599999999888743
Q ss_pred ---CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-
Q 015301 251 ---KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK- 326 (409)
Q Consensus 251 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 326 (409)
..+.|.++|..+. +.+..+... ...+.++++||++
T Consensus 274 hk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG-------~~~~~iavS~Dgkp 312 (352)
T TIGR02658 274 HKTASRFLFVVDAKTG----------------------------------KRLRKIELG-------HEIDSINVSQDAKP 312 (352)
T ss_pred ccCCCCEEEEEECCCC----------------------------------eEEEEEeCC-------CceeeEEECCCCCe
Confidence 1247999998773 223332211 2346778999999
Q ss_pred EEEEEe-CCCeEEEEEccCCceEEEec
Q 015301 327 YIYTGS-SDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 327 ~l~~~~-~dg~v~i~d~~~~~~~~~~~ 352 (409)
+|++.. .++.|.++|..+++.+.++.
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 887776 57889999999999998883
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-11 Score=94.03 Aligned_cols=250 Identities=16% Similarity=0.159 Sum_probs=173.6
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC-CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
..++...|++...-|...-+++.+.|.++++|--. .++..+...... ..+++++.+.++...|++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m--------------P~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM--------------PSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC--------------CCCceEeeeeccceEEEE
Confidence 44566678888888888889999999999999543 333322222211 226899999999999999
Q ss_pred EEecCeEEEEECC----CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 160 AGSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 160 ~~~d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
|-..|++.-+.+. .....+....|...+..+-|+ ....++++.+.|..+.---.+ .+..+....- ...-+
T Consensus 86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~t 159 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPAS 159 (404)
T ss_pred EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccCC
Confidence 9999999888653 444556667899999999999 778889998888766533321 2222211110 00111
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
++.+.-. +...|...|.+..-.+.... -..+..+.+|. .+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~------~~ 199 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHT------GE 199 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcc------cc
Confidence 1111111 33444445555554433211 24566777776 45
Q ss_pred EEeeeecCCCCEEEEEeCCCeEEEEEccCCc-eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 316 YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+..|.+....|++|..|..+.+||+.-.+ ...++.+|...|..++..+.-+.|++++.||.|.+|++.....+
T Consensus 200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 5667888999999999999999999997554 45677899999999999888889999999999999999875544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-10 Score=97.59 Aligned_cols=263 Identities=13% Similarity=0.078 Sum_probs=159.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+..+++++.+|.+..+|..+++.+.+........ .... .++..+++++.++.+..+|..+++.........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 5678888889999999998886655432222211 1122 246778888899999999998887654333211
Q ss_pred eeeecCCCCcceeeEE-EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCcEEEEeeC
Q 015301 132 LDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGHLIFSGSD 205 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~ 205 (409)
.+.+ ... .+..++.++.++.+..+|.++++.+.......... ...... +..++.+..
T Consensus 136 ------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~ 198 (377)
T TIGR03300 136 ------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFA 198 (377)
T ss_pred ------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECC
Confidence 1111 111 24467777789999999999999887765432211 112222 246777888
Q ss_pred CCeEEEecccccccCCceeeeeecc-c------cceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANGVLMGH-L------EGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~~~~~~-~------~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+|.+..+|++ +++........ . .....+.-+| .+..+++++.+|.+..+|.++++..
T Consensus 199 ~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~---------- 264 (377)
T TIGR03300 199 GGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL---------- 264 (377)
T ss_pred CCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE----------
Confidence 8999999965 44433222110 0 0000011111 2457788888999999998774321
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-C
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-N 355 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~ 355 (409)
-...... ...+. .++..+++++.+|.++.+|..+++.+...... .
T Consensus 265 ------------------------W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 265 ------------------------WKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred ------------------------EeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 1111000 01111 13567888889999999999999887665322 1
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
........ .+..|++++.||.|+++|..+++..
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22222222 3568888999999999998876553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-10 Score=94.92 Aligned_cols=260 Identities=13% Similarity=0.092 Sum_probs=155.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceecee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIH 129 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 129 (409)
++..++.++.++.+..+|.++++.+.+.... . .+.+ ... .+..++.++.++.+..||..+++...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-S---EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-c---eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 4667888888999999999888665543211 1 2221 111 2456777788999999999988764333221110
Q ss_pred eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC----C------e-EEEEEeCCCCc
Q 015301 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS----D------V-NTVCFADETGH 198 (409)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~ 198 (409)
.. .. ...+.... + ..++.+..++.+..+|.++|+.+........ . + ....+ .+.
T Consensus 178 ~~--~~--------~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~ 242 (377)
T TIGR03300 178 LT--LR--------GSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG 242 (377)
T ss_pred ee--ec--------CCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence 00 00 00011111 2 3677788889999999999987655421100 0 0 11112 245
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
.+++++.+|.+..+|.. +++....... ....... ..+..+++++.+|.+..+|..+.+...
T Consensus 243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W----------- 303 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELW----------- 303 (377)
T ss_pred EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEE-----------
Confidence 77788889999999964 5544443321 1111222 246678888899999999987743211
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v 358 (409)
....... ....++.. .+..|++++.+|.|+++|..+++.+.+++.+...+
T Consensus 304 -----------------------~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 304 -----------------------KNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred -----------------------ccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 1100000 00111122 25688999999999999999999999988666543
Q ss_pred e-eeEEecCcCeEEeecCCCeEEEE
Q 015301 359 R-DCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 359 ~-~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
. ...+. ++ .|+.++.||.|+.+
T Consensus 354 ~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE-CC-EEEEEeCCceEEEe
Confidence 3 33333 33 47788899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=108.65 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=183.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
..+.||...|..++--.+.+-+++++.|++|++|.+.... ..........|+.+|.++.|-.+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 3567999999999877778889999999999999986531 122345667788899999999998888765 8999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEE-EecCeEEEEECCCCeeeeEEc-----
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAA-GSDNFIYVYDLQANKCSLRIP----- 181 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~----- 181 (409)
++||.--++......-... .+.+..+...+ +...++.+ +...+|+++|.+..+....++
T Consensus 807 HlWDPFigr~Laq~~dapk-------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred eeecccccchhHhhhcCcc-------------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 9999876654321111110 11223333333 34444444 568899999999887766553
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEE-eeC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL-WDI 260 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~ 260 (409)
+.+.-+.+++.. +.|+.++++-.+|.|.+.|.| +++.+..++.-.-....++ .|..+.|+....|.++.+ |..
T Consensus 874 ~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 874 GPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 445668899998 899999999999999999976 7776666655443343343 345566777777888877 764
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
-.+....+. +..+.... | .-.-|.-|+++.....+.+|
T Consensus 948 ldgimh~q~----------------------------------kpppepah-----f---lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 948 LDGIMHLQD----------------------------------KPPPEPAH-----F---LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cCCeeeecc----------------------------------CCCCcchh-----h---hhccCceeEEeccCcEEEEE
Confidence 432111110 00000000 0 00114457777666777777
Q ss_pred EccCC----ceEEEec--cCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 341 DLVSG----AQVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 341 d~~~~----~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
.-... ..+..++ ...+..++++--|-+..+..|...|.|.+
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 42111 1122222 23456778888887777777888888765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-08 Score=94.38 Aligned_cols=324 Identities=12% Similarity=0.114 Sum_probs=183.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-------------Ce--ee--------eee---------------
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-------------NW--KI--------QKD--------------- 78 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-------------~~--~~--------~~~--------------- 78 (409)
..-...|.|++||||+..||....++++.+-+-+- +. .+ .+.
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 34567899999999999999999888887765320 00 00 000
Q ss_pred -------eecccccceEEEEEeCCCCcEEEEEec---C---CEEEEEEcCCCccccccceeceeeeeeeecC--------
Q 015301 79 -------IETKALRWTITDTSLSPDQRFLVYASI---C---AIVNIVDVGSSARESLANVTEIHKGLDFSAD-------- 137 (409)
Q Consensus 79 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~---d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-------- 137 (409)
.... .+..-..++|-.||+++|+.+. . ..++||+-+..-.............+.+.+.
T Consensus 197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 0000 2224467899999999998874 2 5799998762111111111111111111111
Q ss_pred --------------C----------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee--eEEcC-CCCCeEEE
Q 015301 138 --------------G----------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPA-HKSDVNTV 190 (409)
Q Consensus 138 --------------~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~-~~~~v~~~ 190 (409)
+ ......|..+.|++++..|++...|. |.+|-..+-..- +.+.. ....+..+
T Consensus 276 ~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred EcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 1 12345799999999999999877555 999998876532 23322 23345569
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCC--------ceeeee-----------------------eccccceeEEEE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKG--------RANGVL-----------------------MGHLEGITFIDS 239 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~-----------------------~~~~~~v~~~~~ 239 (409)
.|+|.+...|...+.+|.+..++..-....+ ..+..+ .....+|..++|
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 9998888888888887777666543100000 001111 113467999999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc----cceeeeeEE
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH----SVLRTLIRC 315 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 315 (409)
++++..+++...||.+.+|............. .....+... .........
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 488 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP--------------------------KLLSSISLDSMDISDSELPLGS 488 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCCCcccccCc--------------------------chhhhccccccccccccccccc
Confidence 99988899999999999998654321110000 000000000 000000111
Q ss_pred EEeeeecCCCCEEEEEeCC---CeEEEEEccCCc---eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 316 YFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGA---QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.....|..+..+++....+ ..+.++++...+ .+.....-.+.+..+...++...++.-..||.+...+.....
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 489 LRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 2233444445555555443 678888874432 233333335566666666665546666679998876665543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-10 Score=105.88 Aligned_cols=271 Identities=10% Similarity=0.084 Sum_probs=157.9
Q ss_pred EEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeE
Q 015301 89 TDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFI 166 (409)
Q Consensus 89 ~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i 166 (409)
..++++++ +..+++-+.++.|+++|............ ...+..-.......-.....+++.++++.|+++.. ...|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~--g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST--GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC--CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 55566666788899999865432111100 00000000000111224678999998887766654 5679
Q ss_pred EEEECCCCeeeeEEcCC-----------------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-
Q 015301 167 YVYDLQANKCSLRIPAH-----------------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM- 228 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 228 (409)
+++|..++.. .++.+. -.....++++|.++.++++.+.++.|++||.. .+.. ..+.
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~v-~~~~G 722 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGVT-RVFSG 722 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCeE-EEEec
Confidence 9999877653 333110 12346899994477777888888999999964 2211 1111
Q ss_pred --------c------cccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 229 --------G------HLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 229 --------~------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
+ .......++++|+++.| ++-..++.|++||+.+............ ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~----------~~------- 785 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT----------FS------- 785 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc----------cC-------
Confidence 0 11245679999998854 4555678999999876432110000000 00
Q ss_pred ccCccceeeeecccc--eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec-------------cCCcce
Q 015301 294 HPHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-------------FHNAPV 358 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------------~~~~~v 358 (409)
.....+..... ..........++++++|+++++-+.+++|++||..++....... +.-...
T Consensus 786 ----~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 786 ----DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred ----cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00000000000 00000112245678899988888899999999998776543221 111256
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
..++++++|+++++-+.++.|++||+.+..
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 789999999988888899999999998754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=92.70 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=121.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee---------eecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD---------IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
|+.+.|+.+ ..|+++..++.+.....-.+...... .....+.++-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666667654 45677766666555544332111110 00001111111112223367799999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-----ecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-----SDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
.+. ......+....+. .-.+.++...++.+.++. .-+..+.|+++..+.+..-......|+
T Consensus 118 ~~~-~~~~~~~i~~~~~-------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHS-------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred chH-HHhhhhhcccccc-------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccch
Confidence 876 2211111111111 112223333444444332 123455666654333222222234499
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+++-+|...+++++|+.||.+-+||.|. ...+...+..|+.+++.+-|+| ++..|+++++||.+--||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn---~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARN---VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEccc---ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999988888999999999999999983 3556677889999999999999 577899999999999999875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-09 Score=82.41 Aligned_cols=229 Identities=16% Similarity=0.158 Sum_probs=133.4
Q ss_pred EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEE
Q 015301 91 TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 170 (409)
Q Consensus 91 ~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 170 (409)
++.+.+|+.||+.- |..|.+=..++.=.....+.. .. .+....=..++|+||+..||.+...|+|+++|
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcq-------Vp---kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQ-------VP---KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEe-------cC---CCCCchheEEEECCCCcEEEEEcCCCeEEEEe
Confidence 45677888777654 566655544332111101000 00 01111356799999999999999999999999
Q ss_pred CCCCeeeeEEcC-------CCCCeEEEEEeCCC-----CcEEEEeeCCCeEEEeccccc-ccCCceeeeee---ccccce
Q 015301 171 LQANKCSLRIPA-------HKSDVNTVCFADET-----GHLIFSGSDDSLCKVWDRRCF-ISKGRANGVLM---GHLEGI 234 (409)
Q Consensus 171 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~~~v 234 (409)
+...+ +..+.. -...|..|.|.+.. ...|++-..+|.++-|-+... .........+. .+...|
T Consensus 72 l~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred cccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 97533 333322 23567777787433 335667777888887765311 11222222222 246789
Q ss_pred eEEEEcCCCCeEEEEeCCCc-----------EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 235 TFIDSRRDGRYFISNGKDQT-----------TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.++.++|..++|++|+.... +..|.+-+
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~----------------------------------------- 189 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS----------------------------------------- 189 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-----------------------------------------
Confidence 99999999898887775322 11111111
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCC------eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
-+|..+.+ +..+|+ +-.+|.+-+.+...........|..|..||||+.||+...+|
T Consensus 190 -----------------~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG 251 (282)
T PF15492_consen 190 -----------------DSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG 251 (282)
T ss_pred -----------------CCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence 11111111 111111 123444433333222233466899999999999999999999
Q ss_pred eEEEEecCCCccc
Q 015301 378 NIVRWEIPGIGEA 390 (409)
Q Consensus 378 ~i~iw~~~~~~~~ 390 (409)
.|.+|++++....
T Consensus 252 ~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 252 SLSLWEIPSLRLQ 264 (282)
T ss_pred eEEEEecCcchhh
Confidence 9999999986543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-10 Score=84.59 Aligned_cols=266 Identities=10% Similarity=0.023 Sum_probs=159.7
Q ss_pred CCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 60 QESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
....+-+|+.-+..+ +.. --+.+.|.| ...+||.|+..|...+|...+.+......-.. ..++.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~---------~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s-nn~v~ 119 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVE---------FYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS-NNDVT 119 (344)
T ss_pred ceeeeEeccccCCchhhEE---------eeecccccchHhhccccEEEeccccceeeeecccCcccceeeeccc-ccchh
Confidence 345677888766521 111 113455555 35689999999999999998765422211110 00000
Q ss_pred eecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 134 FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
-+...+- ....+..++.|.++++.+++-+..........-.+.+++++ +++.++++.+....|..|.
T Consensus 120 ----------~~~r~cd--~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 120 ----------LVKRYCD--LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYA 186 (344)
T ss_pred ----------hhhhhcc--cccceeeccCCcceeEEEEecCcccceeeccccceeeeEEc-CCCceEEEecCCCcceEEE
Confidence 0111111 22346667788888888886554333221111237899999 8999999999999999998
Q ss_pred ccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 214 RRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+.. ....... ......+.-.+..|+.....+|++..||++.|||++.....-....
T Consensus 187 id~--~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--------------------- 243 (344)
T KOG4532|consen 187 IDD--ESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--------------------- 243 (344)
T ss_pred eCC--ccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---------------------
Confidence 762 2222222 2333445567788999999999999999999999998432211100
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCC--CEEEEEeCCCeEEEEEccCCceEEEecc-------CCc-ceeeeE
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ--KYIYTGSSDNSVYIYDLVSGAQVAKLDF-------HNA-PVRDCC 362 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~-~v~~~~ 362 (409)
.+-..|. +.+....|++.| .+|+..-.-+.+.+.|+++++..+.+.. |.. .|..-.
T Consensus 244 --------strp~hn------Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 244 --------STRPHHN------GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred --------ccCCCCC------CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 0111121 122223455433 3566666678899999999876554432 332 377788
Q ss_pred EecCcCeEEeecCCCeEEEEecCC
Q 015301 363 WHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|+.++..+.+.+++ .+.-|++.+
T Consensus 310 f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 310 FNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccCCCcccccccch-hhheeeccc
Confidence 88887766666654 456666654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-09 Score=101.83 Aligned_cols=268 Identities=14% Similarity=0.157 Sum_probs=155.9
Q ss_pred EEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeeeeeecc-----------cccceEEEEEeCCCCcEEEEEe-cCCEEE
Q 015301 44 YTSQFSND-GSFFVAASQESNIKVYNVDKNWKIQKDIETK-----------ALRWTITDTSLSPDQRFLVYAS-ICAIVN 110 (409)
Q Consensus 44 ~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 110 (409)
..++++++ +.++++-+.++.|++||.... .+....... ..-.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 556666677888999998754 222221100 0112368899999888776664 457899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCC---CcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEcC----
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGD---EDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIPA---- 182 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---- 182 (409)
++|..++......... ..+..+..... ..-.....++++| ++..+++.+.++.|++||..++.... +.+
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9998776532221100 00000000000 0011346799999 55556666678899999988765431 211
Q ss_pred -----------CCCCeEEEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeee-------------ee--------c
Q 015301 183 -----------HKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGV-------------LM--------G 229 (409)
Q Consensus 183 -----------~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~--------~ 229 (409)
.-.....++++ ++++ ++++-+.++.|++||+.. +..... +. .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~t----g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKT----GGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCC----CcEEEEEecccccCcccccccCCCCchhhh
Confidence 11245679999 6666 556666789999999752 111100 00 0
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
.......++++++|+.+++-..++.|++||..+.............. ..+...
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~------------------~dG~~~--------- 854 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF------------------KDGKAL--------- 854 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC------------------CCCccc---------
Confidence 11124588999999988888889999999987643221110000000 000000
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
.........++++++|+++++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00001123457888999999888999999999988765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=105.23 Aligned_cols=296 Identities=17% Similarity=0.155 Sum_probs=183.8
Q ss_pred eeEEecCceeEeecc--ceEEEEeeecCCCceeecCC--CCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 6 EVNYSGRGRFSAADS--CHVLSRYLPVNGPWKVDGMN--SRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~--~~~~~~~~~~~~~~~l~~h~--~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
++..+|-|+-++..+ ...+..+.....+.....|. -.|-.+.|+|.. .+-++......-.+|++.........+
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 456677776544333 33334433333333444444 347788898754 344444445567799987665555566
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
...+|...|+.+.|+|. ...|++++.|-.+..||+++........ .... .....++|+-....++
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~-------------s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWR-------------SAASQVKWNYKDPNVL 174 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-eccc-------------ccCceeeecccCcchh
Confidence 77889999999999996 4678999999999999998875432111 1111 1367789988655666
Q ss_pred EEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 159 AAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+.+....|.+||.+.| .++..+++|...|..++|+......+.+.+.||+|+.||... ..+..........+|..-
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k---St~e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK---STTESKRTVTTNFPIWRG 251 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc---cccccceeccccCcceec
Confidence 6677788999999865 567788999999999999866677899999999999999752 222222223344566666
Q ss_pred EEcCCCC--eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 238 DSRRDGR--YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 238 ~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
.+.|-|+ ++.-.-.+..+.+++.++....... .....++..|.||..... ..
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~------------------------~~~~~pVh~F~GH~D~V~--eF 305 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV------------------------FDLNTPVHTFVGHDDVVL--EF 305 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhcc------------------------ccCCcceeeecCcchHHH--HH
Confidence 6666443 2222222234444444432111000 011356788888864221 11
Q ss_pred EEe------eeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 316 YFS------PEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 316 ~~~------~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.|. -++....-.|++=+.|..+++|.+.+
T Consensus 306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 110 01222234689999999999998854
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-09 Score=79.64 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=136.7
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCee--eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
.++.+++|++||.. .|..|.|=...++.. +.+....+...-.=..++||||+..||.+...|+|+++|+...+.-..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 35678899988876 466777776655421 112111222222457799999999999999999999999986543222
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCC------CeEEEEEecCeEEEEECCCC-----eeeeEE---cCCCCCeE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG------QELVAAGSDNFIYVYDLQAN-----KCSLRI---PAHKSDVN 188 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~~-----~~~~~~---~~~~~~v~ 188 (409)
..... +.. .-...|..+.|.+.. ..|++-...|.++-|-+..+ +....+ ..+...|+
T Consensus 81 ~p~~~------~~~---d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 81 PPAMS------FPG---DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred Ccccc------cCC---ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 11110 111 123357777776522 24666667888887765322 222222 23467899
Q ss_pred EEEEeCCCCcEEEEeeCCCe-EEEecccccccCCceeeeeeccccceeEEEEcCCCC-e-EEEEeCCCc------EEEee
Q 015301 189 TVCFADETGHLIFSGSDDSL-CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-Y-FISNGKDQT------TKLWD 259 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-l~~~~~dg~------i~iwd 259 (409)
++.|+ +..++|++|+.... -..+. +....+++-..-.+.. + .++...|+. ..+|.
T Consensus 152 ~~vy~-p~h~LLlVgG~~~~~~~~s~---------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGCEQNQDGMSK---------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred EEEEc-CCCCEEEEeccCCCCCcccc---------------ccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 99999 66677776654321 00000 1111222221111111 1 111111211 11222
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI 339 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i 339 (409)
+-+ +..+... ......++.+..||||++||+...+|.|.+
T Consensus 216 ~~~-------------------------------------~~~fs~~---~~~~d~i~kmSlSPdg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 216 IPS-------------------------------------FKFFSRQ---GQEQDGIFKMSLSPDGSLLACIHFSGSLSL 255 (282)
T ss_pred ccc-------------------------------------eeeeecc---ccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence 111 1111100 112255678899999999999999999999
Q ss_pred EEccCCceEEEeccCC
Q 015301 340 YDLVSGAQVAKLDFHN 355 (409)
Q Consensus 340 ~d~~~~~~~~~~~~~~ 355 (409)
|++.+.++...+.-++
T Consensus 256 W~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 256 WEIPSLRLQRSWKQDE 271 (282)
T ss_pred EecCcchhhcccchhh
Confidence 9999988877765443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-08 Score=87.95 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCcE-EEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 87 TITDTSLSPDQRF-LVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~-l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
......|+|||+. ++..+. +..|.++|+.+++......... ......|+|||+.++....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----------------~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----------------MLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------------cEEeeEECCCCCEEEEEEc
Confidence 5778999999985 665443 3578999998876544432111 2456779999987765533
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCC--eEEEecccccccCCceeeeeeccccceeE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDS--LCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+..|.++|+.+++.. .+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+....... ... ..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~rlt~-~g~--~~ 323 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQVVF-HGK--NN 323 (419)
T ss_pred cCCCcEEEEEECCCCcEE-EcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEeCcc-CCC--cC
Confidence 357889998887644 343344334556899 7787666554 344 45666643 333322221 111 12
Q ss_pred EEEcCCCCeEEEEeCC---------CcEEEeeCCC
Q 015301 237 IDSRRDGRYFISNGKD---------QTTKLWDIRK 262 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~d---------g~i~iwd~~~ 262 (409)
..|+|+|+.|+..... ..|.+.|+.+
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 4899999988877653 2566666654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-08 Score=79.40 Aligned_cols=222 Identities=16% Similarity=0.153 Sum_probs=138.5
Q ss_pred EEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc-CCCCeEEEEEecCeEE
Q 015301 90 DTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS-TDGQELVAAGSDNFIY 167 (409)
Q Consensus 90 ~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~ 167 (409)
++.|.+ ++.++++-...+.|..|+..++........ ....+++. +++. |+++.. +.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~------------------~~~G~~~~~~~g~-l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP------------------GPNGMAFDRPDGR-LYVADS-GGIA 63 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS------------------SEEEEEEECTTSE-EEEEET-TCEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC------------------CCceEEEEccCCE-EEEEEc-CceE
Confidence 567888 666666666789999999988765321110 25566777 5654 555554 4466
Q ss_pred EEECCCCeeeeEEcC-----CCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeeccccce
Q 015301 168 VYDLQANKCSLRIPA-----HKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 168 v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
++|..+++....... .....+.+++. +++++.++.... |.|..++. . .............
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~-----~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP-----D-GKVTVVADGLGFP 136 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET-----T-SEEEEEEEEESSE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC-----C-CeEEEEecCcccc
Confidence 669988865443322 34567899999 788877775543 44666663 2 2233333445667
Q ss_pred eEEEEcCCCCeEE-EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 235 TFIDSRRDGRYFI-SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 235 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.++|+|+++.|+ +-+..+.|..+++......... .+.+..+....
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~------ 183 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP------ 183 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS------
T ss_pred cceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC------
Confidence 8999999998776 5566788888888642210000 00011111111
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEe
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 372 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 372 (409)
...-.++++.+|++.++....+.|.+++.+ |+.+..+......+++++|. ++.+.|+.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 112234677889988888889999999986 99888887666689999994 56564443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-10 Score=92.13 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=183.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSS 117 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~ 117 (409)
|.+.|+.+.-+ ..+++.+++.||.++.|.-..-..+.-......|-..|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777777655 4679999999999999986543334444456677778999999999999999777 999999999876
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC--CeEEEE-EecCeEEEEECCCCe--eeeEEcCCCCCeEEEEE
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--QELVAA-GSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~ 192 (409)
............. ..+...++.. ..+++. -.++.+.++|-.... ....-.-|..+|.++.+
T Consensus 87 DminmiKL~~lPg--------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 87 DMINMIKLVDLPG--------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred chhhhcccccCCC--------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 6543333332211 1111122211 133333 347899999975443 22333569999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEeccccccc--CC---------ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFIS--KG---------RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+ +.+..+++....|.|.-|......+ .. ..+..+........++.|+|++..+.+-+.|..|++++++
T Consensus 153 ~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 153 N-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred e-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 9 8888999999999999999641000 00 1111122334567899999999999999999999999999
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
++...+............... .+.-....+.. .-..-+.++.+.. .......|+..|++|+.|+-=| |++.+
T Consensus 232 tGklvqeiDE~~t~~~~q~ks-~y~l~~VelgR-Rmaverelek~~~-----~~~~~~~fdes~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKS-PYGLMHVELGR-RMAVERELEKHGS-----TVGTNAVFDESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred cchhhhhhhccchhhhhcccc-ccccceeehhh-hhhHHhhHhhhcC-----cccceeEEcCCCCEEEeeccee-EEEEE
Confidence 977666655443333322211 00000000000 0000011111211 1122345777899999998776 89999
Q ss_pred ccCCceEEEe
Q 015301 342 LVSGAQVAKL 351 (409)
Q Consensus 342 ~~~~~~~~~~ 351 (409)
+.++.....+
T Consensus 304 ~~tn~v~ri~ 313 (558)
T KOG0882|consen 304 LDTNTVVRIL 313 (558)
T ss_pred eecCeEEEEe
Confidence 9888776654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=92.82 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=112.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC---EEEEEEcCCCc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSA 118 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~~w~~~~~~ 118 (409)
.+..+..+|++++||++..+....++++.......+...........+++.|..+.....++..-| .+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344566788999999998888877877765533222222222222455566666655555554444 44555544333
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETG 197 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 197 (409)
..... +|-..++.++|+||+++|+++..|..|++-.....-.+..+ -+|+..|..++.. ++
T Consensus 144 ~~~~l----------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~ 205 (390)
T KOG3914|consen 144 CEPIL----------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN 205 (390)
T ss_pred cchhh----------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence 22211 45557999999999999999999999999888766555554 5799999999997 45
Q ss_pred cEEEEeeCCCeEEEecccccccCCceeeee
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
..|++++.|+++++||++ +++.+..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecc----cCCccccc
Confidence 669999999999999976 66655443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=94.02 Aligned_cols=167 Identities=20% Similarity=0.311 Sum_probs=124.6
Q ss_pred EEcC--CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 149 KFST--DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 149 ~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
+|+- .|-. ++.+.+-.|.+-|++++... .+. ..+.|.++.|. ..+++++.|..+|.|..+|+|+..........
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 5543 2334 34445677889999887543 344 57889999998 78999999999999999999965333333333
Q ss_pred eeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 227 LMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 227 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
..-|...|+++..-. ++++|++.+.+|.|++||++..++ ...+..+++
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYeG 342 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYEG 342 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeeec
Confidence 445888999988766 788999999999999999998443 234778888
Q ss_pred ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC
Q 015301 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 354 (409)
|......... -..+....+++++.|...+||.++.+..+.+++..
T Consensus 343 HvN~~a~l~~----~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 343 HVNLSAYLPA----HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccc----ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 8755443322 23455778888999999999999999999988744
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-08 Score=87.62 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=120.8
Q ss_pred CceeecCCCCeEEEEECCCCCE-EEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-c--
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSF-FVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-I-- 105 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~-l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-- 105 (409)
+..+.... .+....|||||+. ++..+. +..|+++|+.+++.. ......+ ......|+|||+.|+... .
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g---~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQG---MLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCC---cEEeeEECCCCCEEEEEEccCC
Confidence 34344333 7889999999985 554443 356889999887433 2222222 456678999998877553 2
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEEcC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~ 182 (409)
+..|.++++.+++......... ......|+|||+.|+..+.. ..|+++|+.+++..+....
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~----------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPG----------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCC----------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 3568888887765433222111 12345799999988877642 2788899988776443321
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCC---------CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
... ...|+ |+++.|+..... ..|.+.|+. .+. ...+... .......|+|||+.++....++
T Consensus 320 -g~~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 320 -GKN--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTN----SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred -CCc--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECC----CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 111 24899 788877766543 257777753 232 2333322 2334588999999887765432
Q ss_pred ---cEEEeeCCC
Q 015301 254 ---TTKLWDIRK 262 (409)
Q Consensus 254 ---~i~iwd~~~ 262 (409)
.+.+.++..
T Consensus 390 ~~~~L~~~~l~g 401 (419)
T PRK04043 390 NQSALGIIRLNY 401 (419)
T ss_pred CcEEEEEEecCC
Confidence 345555543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=89.85 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=110.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
.+..+..++++++||++..+....++++..... ......... ....+++.|..+.....++...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-------------~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-------------PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-------------ccCcceeeeeeccceEEEEeecCC
Confidence 345566788899999998888887888765543 111111000 0023445555555555555444
Q ss_pred -CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 164 -NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
..+.+|....+.+ ..+-+|-+.+++++++ +|+.+|+++..|..|++-... .....-....+|..-|..++.-+
T Consensus 131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp---a~f~IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRC-EPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP---ATFVIESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred ceeeeeecccccCc-chhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC---cccchhhhccccHhheeeeeecc-
Confidence 4455555554443 3356899999999999 899999999999999997753 23333344567999999999886
Q ss_pred CCeEEEEeCCCcEEEeeCCCCccc
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+..|++++.|++|++||++++.+.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 455899999999999999996654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-09 Score=79.53 Aligned_cols=194 Identities=16% Similarity=0.088 Sum_probs=129.0
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
...+|+.|+..|...+|...+.+... ....|...|+-+.-.-.....+..++.|.++++.++. ...... ..|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~----~~s~~~--~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS----GDSNKF--AVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe----cCcccc--eeec
Confidence 44578999999999999998665432 2334444443222111223446677889999998864 111111 1233
Q ss_pred c--ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 232 E--GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 232 ~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
. .+.+++++++++++++.+....|..|.+...... .+.......
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey--------------------------------~~~~~~a~t-- 202 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY--------------------------------IENIYEAPT-- 202 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccce--------------------------------eeeeEeccc--
Confidence 2 3788999999999999999999999998763211 111111111
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-E----EeccCCcceeeeEEecCcC--eEEeecCCCeEEEE
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-A----KLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRW 382 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~----~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw 382 (409)
...-|...|+.....+|++..||++.|||++..... . +-..|.+.+..+.|++-|. +|+..-.-+.+.+-
T Consensus 203 ---~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 ---SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ---CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 122355578888899999999999999999875432 2 2245889999999998766 45444445789999
Q ss_pred ecCCCcc
Q 015301 383 EIPGIGE 389 (409)
Q Consensus 383 ~~~~~~~ 389 (409)
|+.+...
T Consensus 280 D~R~~~~ 286 (344)
T KOG4532|consen 280 DTRNYVN 286 (344)
T ss_pred EcccCce
Confidence 9988654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=96.55 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=162.3
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
.....+|...|..++--.+.+.+++++.|.+|++|.++.......... ..-....|..+|.++.|..+.+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa--------CQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA--------CQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce--------eeeEhhhccCcccceeeeecccee
Confidence 344567777888887777788899999999999999975432211110 111113566789999999998888
Q ss_pred EEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEEEeCC-CCcEEEEe-eCCCeEEEecccccccCCceeeee-----e
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADE-TGHLIFSG-SDDSLCKVWDRRCFISKGRANGVL-----M 228 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~ 228 (409)
+++ ||.|.+||.--++++..+. ...+.+..+...|. +..++.+| +...+|+++|.| .......+ .
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR----SCEWTCELKVCNAP 873 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc----cccceeeEEeccCC
Confidence 765 7899999987777665331 12233444444422 34444444 788899999977 33333332 3
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
+.+..+.+++..+.|+.++++-..|+|.+.|.+++. .+..++....
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrpmec 919 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRPMEC 919 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCcccc
Confidence 345668899999999999999999999999999843 3333332210
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEE-EEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYI-YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
-...+ -.|..+.|+....|.++.+ |..-++....+.+....+..-+. .-|..|+++.....+.+|.-
T Consensus 920 ------dllql-aapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 920 ------DLLQL-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ------hhhhh-cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEec
Confidence 00011 1234567777778888888 88777766666654444333222 23566788777677777753
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-10 Score=85.43 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=163.4
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc---ccccceeceeeeeeeecCCCCcceeeEEEEEcCCC--CeEEEE
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR---ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--QELVAA 160 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 160 (409)
..|+++.|...|.+|++|...|.|.+|.-..... ......+.....+.+... -.-...|..+.|..++ ..++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkS-leieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKS-LEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhh-ccHHHHhhheeeecCCCcceEEEe
Confidence 3699999999999999999999999997654431 101111111101000000 0112357888887644 356677
Q ss_pred EecCeEEEEECCCCe-------------------e------------------e-----eEE-cCCCCCeEEEEEeCCCC
Q 015301 161 GSDNFIYVYDLQANK-------------------C------------------S-----LRI-PAHKSDVNTVCFADETG 197 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~~~~ 197 (409)
+.|.+|++|.+.... + + +.. ..|...+.++.++ .+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence 789999999875320 0 0 001 2567778899998 676
Q ss_pred cEEEEeeCCCeEEEecccccccCCceeeeeecc-----ccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
..++++ .|=.|.+|++......... ..++.| ..-|++..|+|. ...+...+..|.|++-|++....-.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 666664 5678999997632222222 222333 346788889985 45666777889999999985211000000
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-ceEEE
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-AQVAK 350 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~ 350 (409)
+. .....-..+.....++..+....|+++|+++++-+. -+|+|||++.. .++.+
T Consensus 263 --------------------lf----e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 263 --------------------LF----ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred --------------------hh----hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 00 000000011112233344556689999999988654 57999999764 56777
Q ss_pred eccCC------------cce---eeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 351 LDFHN------------APV---RDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 351 ~~~~~------------~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+..|. ..| ..+.||.|.+.+.+|+..+..-++-..
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 75442 223 347888888899999988887777643
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=85.77 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=106.7
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-----c
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-----I 105 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~ 105 (409)
.+.+.+..|.++-.+-+.+-.++.++++..||.+.+.+.+....+....... |. .-.+.+....++.+.++. .
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~-~~-~~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSI-HS-GSASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccc-cc-cccccceeecccEEecCCcceEee
Confidence 3344555666655555556567789999999999999987532222111110 10 111222233444444432 1
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeee-eEEcCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS-LRIPAH 183 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~ 183 (409)
-+..+.|+++..+....... . ...|.+++-+|. .+.+++|+.||.+-+||.++.... ..+..|
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~--------------~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah 222 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKK--------------A-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH 222 (319)
T ss_pred ccceeeeccccccccccccc--------------c-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh
Confidence 23345555543322111110 0 113888998984 556777888999999999887543 345789
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
..++..+-|+|.++..|+++++||.+..||..
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 99999999999999999999999999999954
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-09 Score=92.05 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
++..++.|+....+..+|+.+.+..+...-..+.|+-|.. +++.+++|...|+|.+-|.+ +.+.++.+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4556788888888999999988877766544545666664 58899999999999999975 8889999999999
Q ss_pred ceeEEEEcCCCCeEEEEeC---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 233 GITFIDSRRDGRYFISNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.|..+.. .|+.|++++. |.-|++||+|++........ .
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-------------------------------~ 265 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-------------------------------P 265 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------------------c
Confidence 9987766 4888998874 55689999998654332211 0
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc---CC-ceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV---SG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~---~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
.+.. -..+.|.+ ...+++.+..|...+-|.. +. ..+..+......+..+.+|++++.|+.+..+|.|
T Consensus 266 ~~P~------flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 266 YGPQ------FLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCch------hhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 1100 00011111 2468888889999999833 22 1233333344569999999999999999999999
Q ss_pred EEEe
Q 015301 380 VRWE 383 (409)
Q Consensus 380 ~iw~ 383 (409)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-06 Score=69.26 Aligned_cols=219 Identities=20% Similarity=0.180 Sum_probs=135.1
Q ss_pred ceeeEEec-CceeEeec-cceEEEEeeecCCCceeecCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSG-RGRFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFS-NDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~-dg~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+...|.+ +|.+..++ ....+.++.+............ ...+++. +++.+++ +..++ +.++|..++.. .....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEE-EEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcE-EEEee
Confidence 35678887 77766654 3445555555555443333333 6777777 6765544 44444 66669888733 33222
Q ss_pred c--cc-ccceEEEEEeCCCCcEEEEEecC--------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 81 T--KA-LRWTITDTSLSPDQRFLVYASIC--------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 81 ~--~~-~~~~v~~~~~s~~~~~l~~~~~d--------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .. ....++.+++.|+|++.++.... |.|..++.. ++........ ...+.++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----------------~~pNGi~ 140 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----------------GFPNGIA 140 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----------------SSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----------------ccccceE
Confidence 2 11 34578999999999977766533 557777766 3322221111 1378899
Q ss_pred EcCCCCeEEEE-EecCeEEEEECCCCee-------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 150 FSTDGQELVAA-GSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 150 ~~~~~~~l~~~-~~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
|+|+++.|+++ +..+.|..+++..... ...+....+..-.+++. .++++.++....+.|.++|. .+
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p-----~G 214 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDP-----DG 214 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEET-----TS
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECC-----Cc
Confidence 99999977654 4578899999853221 11222222347789998 88998888888899999994 46
Q ss_pred ceeeeeeccccceeEEEEc-CCCCeEEEE
Q 015301 222 RANGVLMGHLEGITFIDSR-RDGRYFISN 249 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 249 (409)
+.+..+......+++++|. ++.+.|+..
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 6677666665688999994 565555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=61.22 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=36.9
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++++.++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-10 Score=86.83 Aligned_cols=149 Identities=17% Similarity=0.296 Sum_probs=110.3
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-----e
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-----K 175 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~ 175 (409)
++.+.+..+-+-|++++....... ...|.++.|...++++..|+.+|.|..+|++.+ .
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~s-----------------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQS-----------------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred ecccccceeEEEEeeccccccccc-----------------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence 445556778888888876543332 224888999998999999999999999999765 3
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE--EcCCCCeEEEEeCCC
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID--SRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg 253 (409)
+...+ .|.+.|+++....-++..|++.+.+|+|++||+|.. ..+.-+....+|...-.-+- ..+....+++++.|-
T Consensus 291 ~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred ceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCee
Confidence 34444 489999999988447889999999999999999831 22334777788865433333 455667888899999
Q ss_pred cEEEeeCCCCccccc
Q 015301 254 TTKLWDIRKMSSNTT 268 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~ 268 (409)
..+||.++.+....+
T Consensus 369 ytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCT 383 (425)
T ss_pred EEEEEecccCceeec
Confidence 999999997544333
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=88.17 Aligned_cols=274 Identities=12% Similarity=0.042 Sum_probs=173.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC------------cEEEEEecCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ------------RFLVYASICA 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg 107 (409)
...-.++.|+|.| ++|-|+. ..|.+-|..+-+.++. ...|...|+.+.|.|.. -.||++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999977 5666654 5688888776544443 34455689999998731 2577788889
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CC-CeEEEEEecCeEEEEECCCCeeeeEEcCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DG-QELVAAGSDNFIYVYDLQANKCSLRIPAH 183 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 183 (409)
.|.+||........... .+..++..++|-+ +. ..|++-.....+.+|+..+|+........
T Consensus 90 rIil~d~~~~s~~~~l~---------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS---------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred cEEEEEehhhhhhhhhc---------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 99999998775543332 2233578888876 33 45666666789999999999999888777
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.....|+.+.|-+...+..-+..|.+.+-+.- +.......+|.-.|++=.-++......++.. +..+
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l-----~~sep~~pgk~~qI~sd~Sdl~~lere~at~-------ns~t- 221 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL-----GLSEPDVPGKEFQITSDHSDLAHLERETATG-------NSTT- 221 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEecc-----CCCCCCCCceeEEEecCccchhhhhhhhhcc-------cccc-
Confidence 77888899998788888887888888877742 1111111122222221111111111111111 0000
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+.. ....-++ +...+|+|.-+-++.......+.++|++
T Consensus 222 s~~~-----------------------------sa~fity------------~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 222 STPA-----------------------------SAYFITY------------CAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred CCCc-----------------------------chhHHHH------------HHhhhcChhhhceEEEEeccceEEEcch
Confidence 0000 0000000 1122456655555555567789999999
Q ss_pred CCceEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCC
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 387 (409)
-..++....-..+.+.-+.|-|+.+ .|+..-.||.+.+|--...
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 9999888877777777788888776 8999999999999986553
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-09 Score=84.75 Aligned_cols=264 Identities=16% Similarity=0.077 Sum_probs=167.8
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
|...|+.+.-+ -.+++.+++.||.++.|.-..-.. ..+......|...+.+++.+-++.++.+.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------eeehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 44456655443 567999999999999997644221 2233333345557888999999999998777
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC--c-EEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG--H-LIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|..++++|+++-..+..++.- .....+.|.-..+ . .+++ .-.+|.+.++|-+ .........-.-|..+|..+.
T Consensus 75 Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEE
Confidence 999999999877655433321 1112223321222 1 3333 3467899999965 233344555566999999999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
+++.+..+++....|.|..|.....-+... ....|.. .....+..+... .....+
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----~~l~~~~--------------K~eTdLy~f~K~------Kt~pts 206 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----TNLNFEL--------------KHETDLYGFPKA------KTEPTS 206 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCcc-----ccccccc--------------cccchhhccccc------ccCccc
Confidence 999999999999999999999874110000 0000000 000001111111 112235
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc--------------------------------CCc-ceeeeEEec
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF--------------------------------HNA-PVRDCCWHP 365 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------------------------------~~~-~v~~~~~s~ 365 (409)
..|+|++..+.+-+.|..|++++.++++.++.+.. |.. .-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 57999999999999999999999999876554421 222 335678888
Q ss_pred CcCeEEeecCCCeEEEEecCCCcc
Q 015301 366 IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+++|+-++.=| |++.++.++.-
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeE
Confidence 899888887654 78888876543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-06 Score=76.32 Aligned_cols=264 Identities=9% Similarity=0.049 Sum_probs=151.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEE-EEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITD-TSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
+..++.++.+|.+..+|.++++.+.+.... + .+.+ ... .+..++++..++.+..+|..+++............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-G---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-C---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 456777888999999999998666543221 1 1211 111 24456677888999999999988654433221000
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-------CeEEEEEeC-CCCcEEEE
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-------DVNTVCFAD-ETGHLIFS 202 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~-~~~~~l~~ 202 (409)
. . .....++ . .+..++.++.++.+..+|..+++.+........ ....+..+| -.+..++.
T Consensus 194 ~--~----~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 194 T--L----RGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred c--c----cCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 0 0 0000111 1 123466777889999999999987665431110 000111111 12456777
Q ss_pred eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
++.+|.+..+|.. +++...... ......+.. .+..++.++.+|.+..+|..+++..-....
T Consensus 262 ~~~~g~l~ald~~----tG~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------- 322 (394)
T PRK11138 262 LAYNGNLVALDLR----SGQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD----------- 322 (394)
T ss_pred EEcCCeEEEEECC----CCCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-----------
Confidence 7788999999965 444433221 111112222 356777788899999999877432111000
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee-e
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD-C 361 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~-~ 361 (409)
.. .. ...++.. .+..|+.++.+|.+++.|..+|+.+...+.....+.+ .
T Consensus 323 --------------------~~-~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 323 --------------------LL-HR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred --------------------cC-CC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 00 00 0011111 2567888999999999999999998877644333332 2
Q ss_pred EEecCcCeEEeecCCCeEEEEec
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
.+ .+..|+.++.||.|+.+++
T Consensus 373 ~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCceEEEEeC
Confidence 22 2346888889999998875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=81.79 Aligned_cols=153 Identities=12% Similarity=0.167 Sum_probs=109.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|...|.--+++..+++++.|+.-|.+++|+-..++...... .+..+.+..+..+++..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~--~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc--cCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 44556666677789999999999999999987764433322 2234467777889999999999999999999887743
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC----eeeeEEcCCCCCeEEEEEeC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN----KCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~ 194 (409)
...... +.+....|...|++++|++++..+++|...|.|..-.+.+. -..+.+..-.+.|..+.+.
T Consensus 110 p~~~~~---------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 110 PRDLDY---------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred CCccee---------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 322222 22223346778999999999999999999999999888762 1123333456788888886
Q ss_pred CCCcEEEEee
Q 015301 195 ETGHLIFSGS 204 (409)
Q Consensus 195 ~~~~~l~~~~ 204 (409)
++.+|++..
T Consensus 180 -q~~LLVStl 188 (726)
T KOG3621|consen 180 -QSYLLVSTL 188 (726)
T ss_pred -cceehHhhh
Confidence 444444433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-07 Score=72.54 Aligned_cols=223 Identities=16% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 60 QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.+|+|..||..+++.+............+ +. ..+++..+++++.++.+..||..+++.............
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------- 70 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------- 70 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence 36889999998887776653322122222 11 223566777788999999999999886544443221111
Q ss_pred CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCC---CeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKS---DVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
. . ...+..+++++.++.+..+|..+|+.+... ..... ........ ..++.++++..++.|..+|++
T Consensus 71 -----~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 71 -----A--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp -----G--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT
T ss_pred -----e--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC
Confidence 1 1 124455677778889999999999998874 32211 11222222 237778888889999999965
Q ss_pred ccccCCceeeeeeccccc----------eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccc
Q 015301 216 CFISKGRANGVLMGHLEG----------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 285 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (409)
+++.+......... +..-....++ .++.+..++.+..+|+.+.+.
T Consensus 141 ----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~-------------------- 195 (238)
T PF13360_consen 141 ----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK-------------------- 195 (238)
T ss_dssp ----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE--------------------
T ss_pred ----CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE--------------------
Confidence 66665555443211 1122222234 667777777544448887321
Q ss_pred cccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 286 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+ +.... .. . ......++..|++++.++.|..||+++++.+.+
T Consensus 196 --------------~--w~~~~--~~----~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 196 --------------L--WSKPI--SG----I-YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --------------E--EEECS--S-----E-CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --------------E--EEecC--CC----c-cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1 11110 00 0 011334678888888999999999999987643
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-06 Score=69.20 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=145.2
Q ss_pred eEEEEEeCC-CCcEEEEEecCC-EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--
Q 015301 87 TITDTSLSP-DQRFLVYASICA-IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-- 162 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 162 (409)
....++.+| +...++.+-.-| ...+||..+++......... +-.| .-...|++||++|++.-.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~---gRHF----------yGHg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP---GRHF----------YGHGVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC---CCEE----------ecCEEEcCCCCEEEEecccc
Confidence 345678889 566777777766 47789998887654332221 1111 223679999999998744
Q ss_pred ---cCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-------CC-----------eEEEecccccccC
Q 015301 163 ---DNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-------DS-----------LCKVWDRRCFISK 220 (409)
Q Consensus 163 ---d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg-----------~i~iwd~~~~~~~ 220 (409)
.|.|-|||.. +-+.+.++..|.-....+.+. +++..|+++.. .| ++...|. .+
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~----~s 147 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA----RS 147 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec----CC
Confidence 5899999998 667778888888788889999 78877776531 12 2333332 24
Q ss_pred Cceeee--e--eccccceeEEEEcCCCCeEEEEeCCCc-------EEEeeCCCCcccccccccccccccccccccccccc
Q 015301 221 GRANGV--L--MGHLEGITFIDSRRDGRYFISNGKDQT-------TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 221 ~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
+..+.. + ..|...|..+++.++|..++..-..|. |.+++-
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~----------------------------- 198 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR----------------------------- 198 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-----------------------------
Confidence 554444 3 236678889999988876554433331 111111
Q ss_pred eeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCcceeeeEEecCc
Q 015301 290 RRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY 367 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 367 (409)
+..+..+..... .......+-++++++++.++++.+- .+.+.+||..+++.+....-. .+..++-.+++
T Consensus 199 -------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~ 269 (305)
T PF07433_consen 199 -------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG 269 (305)
T ss_pred -------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc
Confidence 111111111110 1112233456688889988876664 678999999999998776533 35566666655
Q ss_pred CeEEeecCCCeE
Q 015301 368 PMLISSSWDCNI 379 (409)
Q Consensus 368 ~~l~s~~~dg~i 379 (409)
+++|.+. |.+
T Consensus 270 -f~~ssG~-G~~ 279 (305)
T PF07433_consen 270 -FLVSSGQ-GQL 279 (305)
T ss_pred -eEEeCCC-ccE
Confidence 6666654 543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-07 Score=73.81 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=131.2
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
+|.|..||..+++........... . ...+. ..+++..+++++.++.|..||..+|+.+..... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~------------~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI------------G-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC------------S-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS
T ss_pred CCEEEEEECCCCCEEEEEECCCCC------------C-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc
Confidence 678888888887765444331100 0 11111 223556677778899999999999999887764 23
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccc---cceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHL---EGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+..... ..+..+++++.++.+..+|.+ +++..... .... ..........++..++.+..++.|..+|.+
T Consensus 67 ~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 67 PISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp CGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred cccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC
Confidence 2222112 235566777788899999954 66666653 2221 111222222337788888889999999998
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeeccccee-----eeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR-----TLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
++.... .+....... ........+.+. ++ .++.++.++.
T Consensus 141 tG~~~w----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 141 TGKLLW----------------------------------KYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR 184 (238)
T ss_dssp TTEEEE----------------------------------EEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred CCcEEE----------------------------------EeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence 854322 221111000 000001111222 34 6777777775
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.-+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+++..
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 4444999998765333 2223332 3466777887778999999999987653
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-06 Score=70.20 Aligned_cols=280 Identities=15% Similarity=0.087 Sum_probs=158.2
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEcCCCccccccceeceeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+.+.|+|.++++.+-...... .-.+..+|+++.+.+++ ..-.|.+||..+-.......++..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999998885444332222 22366899999988764 234699999998765544443322111
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
.. ......++++.+++++++... ..+|.|.|++.++.+.++.... |.-..|..+.-+.+-+.||.+
T Consensus 92 ~~--------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 92 QV--------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp -B--------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCE
T ss_pred ee--------cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCce
Confidence 00 002344688999999888755 5689999999999988876322 222223344567888899999
Q ss_pred EEecccccccCCceeeee----eccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVL----MGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~----~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
....+. ..++..... ....+++ ..-.+...+..++..+.+|.|+--|+.......... |.. .
T Consensus 160 ~~v~Ld---~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~-------~~~---~ 226 (342)
T PF06433_consen 160 LTVTLD---ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP-------WSL---L 226 (342)
T ss_dssp EEEEET---STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE-------EES---S
T ss_pred EEEEEC---CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc-------ccc---c
Confidence 888875 233332211 1111222 233344455556667888988888887633111100 000 0
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--------C--CeEEEEEccCCceEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS--------D--NSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------d--g~v~i~d~~~~~~~~~~~~~ 354 (409)
.......-+.+.+.. -.++++..+.|++--. | ..|.++|+.+++.+.++..
T Consensus 227 t~~e~~~~WrPGG~Q------------------~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l- 287 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQ------------------LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL- 287 (342)
T ss_dssp -HHHHHTTEEE-SSS-------------------EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-
T ss_pred CccccccCcCCccee------------------eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-
Confidence 000000000000111 1133333333333211 1 2488999999999999874
Q ss_pred CcceeeeEEecCcC-eEEee-cCCCeEEEEecCCCccc
Q 015301 355 NAPVRDCCWHPIYP-MLISS-SWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 355 ~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~~ 390 (409)
..++.+|+.+.+.+ +|++. ..++.|.+||..+++..
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 45788999998877 66654 46899999999987543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-06 Score=76.23 Aligned_cols=266 Identities=10% Similarity=-0.051 Sum_probs=153.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEE-----EEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTIT-----DTSLSP--DQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
+..+++++.+|.+.-+|.++++.+.+...... ..... .+.-.| ++..+++++.+|.+..+|.++++......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 55777788889999999998866654322210 00000 000111 35567778889999999999988755444
Q ss_pred eeceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCc
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGH 198 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 198 (409)
.... +.+ ... .+..+++++.++.+..+|.++|+.+.......... ...... +.
T Consensus 148 ~~~~----------------~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~ 206 (394)
T PRK11138 148 VAGE----------------ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FG 206 (394)
T ss_pred CCCc----------------eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CC
Confidence 3211 111 111 23456777788999999999999887775321111 111111 23
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccc----c---ceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----E---GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
.++.++.+|.+..+|.. +++......... . ....+..+| .+..++.++.+|.+..+|..+++..-.
T Consensus 207 ~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~- 281 (394)
T PRK11138 207 GAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK- 281 (394)
T ss_pred EEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe-
Confidence 56667788888888854 443332221100 0 011111122 245677777889999999887432111
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
..... . ..+.. .+..|+.++.+|.++.+|..+++.+.
T Consensus 282 ---------------------------------~~~~~----~----~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 282 ---------------------------------REYGS----V----NDFAV--DGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ---------------------------------ecCCC----c----cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 00000 0 00111 35677888899999999999998765
Q ss_pred EeccCC-cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDFHN-APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
....-. ....+... .+.+|+.++.||.|++.|..+++.
T Consensus 319 ~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 319 SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred cccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 543211 11222222 245677888999999999887654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=59.10 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=34.1
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 68 (409)
..++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-06 Score=67.85 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=128.9
Q ss_pred CeEEEEECC-CCCEEEEEeCCCc-EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEc
Q 015301 42 RVYTSQFSN-DGSFFVAASQESN-IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDV 114 (409)
Q Consensus 42 ~v~~~~~s~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~ 114 (409)
.-..++.+| ++..++.+-.-|+ ..+||..++..........+. .---.-.||+||++|++.- ..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-EEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 4556666766554 678999988666544332221 1223357999999999873 4578999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------------cCeEEEEECCCCee
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------------DNFIYVYDLQANKC 176 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~ 176 (409)
... ........ .+.-....+.+.|||+.|+++.. +.++...|..+|+.
T Consensus 85 ~~~-~~ri~E~~-------------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 85 ARG-YRRIGEFP-------------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred cCC-cEEEeEec-------------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 832 21111111 11224677889999988887632 33566777888887
Q ss_pred eeE--E--cCCCCCeEEEEEeCCCCcEEEEeeCCCe-------EEEecccccccCCceeeee-------eccccceeEEE
Q 015301 177 SLR--I--PAHKSDVNTVCFADETGHLIFSGSDDSL-------CKVWDRRCFISKGRANGVL-------MGHLEGITFID 238 (409)
Q Consensus 177 ~~~--~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~ 238 (409)
+.. + ..|...|..+++. .++..++..-..|. +-+++. +..+..+ ..-.+.+-+|+
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~------g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRR------GGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred eeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcC------CCcceeccCChHHHHhhCCceEEEE
Confidence 766 4 3377889999998 77776665544432 444442 2212111 23346788999
Q ss_pred EcCCCCeEEEEe-CCCcEEEeeCCCC
Q 015301 239 SRRDGRYFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 239 ~~~~~~~l~~~~-~dg~i~iwd~~~~ 263 (409)
+++++..+++.+ ..+.+.+||..+.
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCC
Confidence 999998775554 5779999998873
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-06 Score=63.08 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
..+++.|+..+.+.--|..++....+.. ... +|.+-+.- -|++++.|...|.+++.++.++.........+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~---RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk- 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGV---RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK- 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCc---eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-
Confidence 3566778888888888888875544322 111 33332222 46789999999999999999996544443332211
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 211 (409)
+ .....+++..+..|+.|+..+..|..+...+.+.+...+.-.+-+..|.++.+. .+...|.+.-
T Consensus 97 -------------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly-~a~t~G~vla 161 (354)
T KOG4649|consen 97 -------------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY-AAITAGAVLA 161 (354)
T ss_pred -------------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEE-EEeccceEEE
Confidence 1 233456889999999999999999999999888775554445556663344444 4444454443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-10 Score=97.22 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=137.4
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC--EEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~~ 111 (409)
..+..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+-+.-+.||..+++.+.-. ...+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHH
Confidence 4677899999999999999999999999999999999984443 3567888999999999998877665433 4678
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc----CCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----AHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~v 187 (409)
|+..+- ........ .-.++.|+.....-+.|+......+||++++.++.++- +....-
T Consensus 1172 W~~~s~-~~~~Hsf~-----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1172 WDASST-GGPRHSFD-----------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred hccccc-cCcccccc-----------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence 988652 11111111 35678888765555666666778999999998877642 122233
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
++..|+ |...+++ +|| .+||+| ....++.+......+ .-.|+|.|..++..+ .|||+++..
T Consensus 1234 n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1234 NLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred cccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHH
Confidence 678888 6666665 455 579987 345555554443222 235899999888754 589999843
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-06 Score=67.33 Aligned_cols=277 Identities=17% Similarity=0.153 Sum_probs=130.2
Q ss_pred EEEECCCCCEEEEEeC-C--CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 45 TSQFSNDGSFFVAASQ-E--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~-d--~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.=+|.+||+.|+.++. | ..+.+.|+++++. .++....+. ......++|+++.++.......|+-.|+.+.+...
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~QLTdg~g~--~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQLTDGPGD--NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE---SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-EECccCCCC--CccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 3467889987766554 4 4577777887733 333332221 12235677888888776666788999999987655
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEE--cCCCCeEEEEE----------------------ecCeEEEEECCCCeee
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAG----------------------SDNFIYVYDLQANKCS 177 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~----------------------~d~~i~v~d~~~~~~~ 177 (409)
+........ -...| +.++..++-.- ....|.-.|+.+|+..
T Consensus 117 vy~~p~~~~---------------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 117 VYEVPDDWK---------------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEE--TTEE---------------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EEECCcccc---------------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 555443322 12233 23444433221 1235667788888765
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeC---CC-eEEEecccccccCCceeeeeeccc--cceeEEEEcCCCCeEEEEeC
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSD---DS-LCKVWDRRCFISKGRANGVLMGHL--EGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 251 (409)
..+. -...+..+.|+|.++.+|+-|-+ +. .-+||-++. .+.....+..+. ..+..=-|.|||..|.--+.
T Consensus 182 ~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 182 VVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred EEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 5554 46678899999888888877643 33 247777653 233333333332 23333458899987654322
Q ss_pred -----CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 252 -----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 252 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
+..|.-+|+.+.... .+.... .......++||+
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~--------------------------------~~~~~p----------~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERR--------------------------------RLMEMP----------WCSHFMSSPDGK 295 (386)
T ss_dssp ETTT--EEEEEE-TTT--EE--------------------------------EEEEE-----------SEEEEEE-TTSS
T ss_pred cCCCCceEEEeeCCCCCCce--------------------------------EEEeCC----------ceeeeEEcCCCC
Confidence 334555555542110 000000 111223456777
Q ss_pred EEEEEeCC----------------CeEEEEEccCCceEEEe---------ccCCc-ceeeeEEecCcC-eEEeecCCCeE
Q 015301 327 YIYTGSSD----------------NSVYIYDLVSGAQVAKL---------DFHNA-PVRDCCWHPIYP-MLISSSWDCNI 379 (409)
Q Consensus 327 ~l~~~~~d----------------g~v~i~d~~~~~~~~~~---------~~~~~-~v~~~~~s~~~~-~l~s~~~dg~i 379 (409)
+++-=+.| --|+++++..++..... .++.. .=....|+||++ .|+++...|..
T Consensus 296 L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~ 375 (386)
T PF14583_consen 296 LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP 375 (386)
T ss_dssp EEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-
T ss_pred EEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc
Confidence 76543333 25677888766543211 11111 124579999999 55667778877
Q ss_pred EEEecC
Q 015301 380 VRWEIP 385 (409)
Q Consensus 380 ~iw~~~ 385 (409)
.||-++
T Consensus 376 ~vY~v~ 381 (386)
T PF14583_consen 376 AVYLVE 381 (386)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 776543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-05 Score=75.03 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=135.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC----
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---- 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---- 115 (409)
.+.|.++.|-.++.-++.+..+|.|.+-|.++..... .......|.+++|+||+..++..+..+++.+-+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 3689999999999999999999999999877652221 22234479999999999999999988887664331
Q ss_pred CCccc--------cccceeceeeeeeeecCCC-----------------CcceeeEEEEEcCCCCeEEEEEe----c-Ce
Q 015301 116 SSARE--------SLANVTEIHKGLDFSADGD-----------------EDEFGIFSVKFSTDGQELVAAGS----D-NF 165 (409)
Q Consensus 116 ~~~~~--------~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~----d-~~ 165 (409)
..+.. ......-.....+|..... .....=+.+.|--||+++++... + ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11110 0000000001111221100 01112345899999999988432 3 78
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
|++||-+ |..-..-....+--.+++|- |.|.++++-. .|+.|.+|.... ...+............+..++|+.+
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCC
Confidence 9999976 54433333334445689998 6888888753 456788887421 1122222223333344899999999
Q ss_pred CCeEEE---EeCCCcEEEeeCCCC
Q 015301 243 GRYFIS---NGKDQTTKLWDIRKM 263 (409)
Q Consensus 243 ~~~l~~---~~~dg~i~iwd~~~~ 263 (409)
+..|++ ......|++|-+.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999887 444555999998773
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-06 Score=77.57 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=104.5
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
..|.++.|..+...++.+...|.|.+-|..+.......... .+|.+++|+||++.++..+..++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd----------------~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD----------------NGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc----------------CceEEEeecCCCcEEEEEeCCcE
Confidence 47999999999999999999999999988776654433332 26999999999999999888777
Q ss_pred EEEEECC----CCeee-------------------eEEcCC---------------------CCCeEEEEEeCCCCcEEE
Q 015301 166 IYVYDLQ----ANKCS-------------------LRIPAH---------------------KSDVNTVCFADETGHLIF 201 (409)
Q Consensus 166 i~v~d~~----~~~~~-------------------~~~~~~---------------------~~~v~~~~~~~~~~~~l~ 201 (409)
+.+.+-. ..+++ ..+.+. .+.=+.+.|- .+|.+++
T Consensus 133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fA 211 (1265)
T KOG1920|consen 133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFA 211 (1265)
T ss_pred EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEE
Confidence 7765421 00100 011110 1112458898 8898988
Q ss_pred Ee-----eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---CCCcEEEeeCCC
Q 015301 202 SG-----SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG---KDQTTKLWDIRK 262 (409)
Q Consensus 202 ~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~ 262 (409)
+. .....|++||.. +.....-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.
T Consensus 212 Vs~~~~~~~~RkirV~drE-----g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-----GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEEeccCCceeEEEeccc-----chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 83 233789999942 333222223334456799999999888764 355788887554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-05 Score=68.48 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=106.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc--------------cceEEEEEeCCCCcEEEEEec
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL--------------RWTITDTSLSPDQRFLVYASI 105 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~ 105 (409)
...+....|||+|+.+|... ++.|.+++..++...+........ -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 57799999999999999886 578999998877333222111000 012356889999999998753
Q ss_pred C-CEEEEE---EcCCCcc--ccccceec-----e--eeee-----------eeecC--CCCcceeeEEEEEcCCCCeEEE
Q 015301 106 C-AIVNIV---DVGSSAR--ESLANVTE-----I--HKGL-----------DFSAD--GDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 106 d-g~i~~w---~~~~~~~--~~~~~~~~-----~--~~~~-----------~~~~~--~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
| ..|..+ +...... .......- . ...+ .+... ......-+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 222222 2222110 00000000 0 0000 00000 0122345889999999985554
Q ss_pred EEec-----CeEEEEECCCCeeeeEEcC-CCC---CeEEEEEe-CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec
Q 015301 160 AGSD-----NFIYVYDLQANKCSLRIPA-HKS---DVNTVCFA-DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 160 ~~~d-----~~i~v~d~~~~~~~~~~~~-~~~---~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
.-.+ ..+.++|..+++....... ... .-....+. +.+..++.....+|.-+||-+. ..+.....+..
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~---~~~~~~~~lT~ 277 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD---LDGGKPRQLTS 277 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE---TTSSEEEESS-
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc---ccccceecccc
Confidence 4332 3577778877655433321 122 22345554 5666777777788876666553 23333444544
Q ss_pred cccceeE-EEEcCCCCeEEE
Q 015301 230 HLEGITF-IDSRRDGRYFIS 248 (409)
Q Consensus 230 ~~~~v~~-~~~~~~~~~l~~ 248 (409)
..-.|.. +.++++++.+..
T Consensus 278 G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEE
T ss_pred CceeecccceEcCCCCEEEE
Confidence 4555644 667887775543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-07 Score=74.16 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=132.0
Q ss_pred CcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 140 EDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
.+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|++|...|.|.+||+|..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~- 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP- 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence 3445699999999766 7888899999999999999988888877 789999998677889999999999999999832
Q ss_pred cCCceeeeeec--cccceeEEEE------cCCCCeEEEEeCCCcEEEeeCCCCccccccccccc----cccccccc----
Q 015301 219 SKGRANGVLMG--HLEGITFIDS------RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR----DYDWDYRW---- 282 (409)
Q Consensus 219 ~~~~~~~~~~~--~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~---- 282 (409)
...+..+.+ ...+|..++. .+.+.+++....+ +..|++...........+.. -.++.+..
T Consensus 269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 222222222 2234444432 2234444444333 56666543221111100000 00000000
Q ss_pred --cccc-----ccce----eccccCccceeeeecccceeeeeEEEEeee--ecCCCCEEE-EEeCCCeEEEEEccCCceE
Q 015301 283 --MEYP-----SYAR----RLKHPHDQSLATYKGHSVLRTLIRCYFSPE--YSTAQKYIY-TGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 283 --~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~-~~~~dg~v~i~d~~~~~~~ 348 (409)
+.+. +..+ ......+..+..-+...............+ -.++.++++ +|...+.+.+||..+++.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 0000 0000 000011111111000000000000000001 123344444 4555688999999999999
Q ss_pred EEeccCCcceeeeEEecC-cC-eEEeecCCCeEEEEecCC
Q 015301 349 AKLDFHNAPVRDCCWHPI-YP-MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~-~~-~l~s~~~dg~i~iw~~~~ 386 (409)
+++. -+.+|.+++.... +. +|++-. |..++|+..+.
T Consensus 425 Q~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9997 4588988876543 33 676664 56888887543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-06 Score=74.66 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=128.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccce-EEEEEeCCCCcEEEEEecCC-----EEEEEEcC
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT-ITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~ 115 (409)
.|+| |++.+..++.|+.+|.|.+.+-.- .. ......+... |..+....+..+|++.+.|+ .+++|+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~--~~--~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF--QL--IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc--ee--eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 5555 578889999999999888876432 22 1223333334 44444444446777776554 59999997
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC----CCeeeeEEcCCCCCeEEEE
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ----ANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~ 191 (409)
.-+..........+.- +.........++.+++.+.+-+.+|+|-.+|.|..+.-. .+....-......+|+.++
T Consensus 101 k~~~n~sP~c~~~~ri--~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRI--FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccCCCCCcceeeeeee--eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 6542221111111111 111112345678999999999999999999999888431 1111111223468999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+. .++..++-+.....|.+|.+. ........+..|..+..|..+++....+++++.. .+.+|+...
T Consensus 179 ~~-~d~~s~lFv~Tt~~V~~y~l~---gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 179 LR-SDGKSVLFVATTEQVMLYSLS---GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred Ee-cCCceeEEEEecceeEEEEec---CCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 98 566552233334678999974 1222345577788889999998765556666655 599999765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-05 Score=62.46 Aligned_cols=211 Identities=13% Similarity=0.157 Sum_probs=115.3
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
+.+.+-...+..++|.|+.+ ++++....+.|..++.+ +..+ ......+. +..-.|++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-r~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-RRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-EEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-EEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34556667799999999865 55566667778777764 4333 33444442 358889998888777776678999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC---CeeeeE--------Ec
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---NKCSLR--------IP 181 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~--------~~ 181 (409)
++........... ...+.+... ..+...+-.++|.+.++.|+++-...-..++.+.. ...+.. ..
T Consensus 92 ~~~~~~~~~~~~~---~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 92 TIDDDTTSLDRAD---VQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EE----TT--EEE---EEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEeccccccchhh---ceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9854332111110 001111111 12344689999999888888887766666666543 111111 11
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc---------cceeEEEEcCCCCeEEEEeCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---------EGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d 252 (409)
.....+.+++++|..+++++.......|..+|. .++.+..+.-.. .+...|+|.++|++.++ ++.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEp 241 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEP 241 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETT
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCC
Confidence 244568999999888899999999999999994 444443332211 35678999999975554 455
Q ss_pred CcEEE
Q 015301 253 QTTKL 257 (409)
Q Consensus 253 g~i~i 257 (409)
+..++
T Consensus 242 Nlfy~ 246 (248)
T PF06977_consen 242 NLFYR 246 (248)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 54443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=82.06 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=131.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+..++-|+-...+..+|+.+...... ..... +.|.-|+. +++++.+|...|+|.+-|..+.+......
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~-~~v~a--~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT-TNVSA--SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee-eeccC--CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 34566666666788888877633332 22221 13555554 57899999999999999998776533222
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe---------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS---------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.|.+.|.++.. .|+.|++++. |..|+|||++..+.+.-+.-+.++ .-+.|+|.-...+++
T Consensus 215 --------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V 283 (1118)
T KOG1275|consen 215 --------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV 283 (1118)
T ss_pred --------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE
Confidence 34556766554 7888998875 567899999988877766655554 667888777888999
Q ss_pred eeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
++..|...+-|.............+......+..++++++++.++.+..+|.|.+|.-
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 9999999999943222222333334444556999999999999999999999999983
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.2e-07 Score=78.07 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=96.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-----CcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-----QRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
+|.++++|+.||+|.|-.+.+...... ...+. ++.+++++|+ .+.+++|+..| +.++.-.=-......
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~-~df~r---piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQ-YDFKR---PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCcccee-EecCC---cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 599999999999999999888744433 22333 7999999998 57889999888 666532110000000
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC------CeEEEEEeCCCCcE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS------DVNTVCFADETGHL 199 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~ 199 (409)
......++|.++.| .|+++|-++.+| |++||..+++.+..++.... ....+.|. +...
T Consensus 155 -----------~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~~ 218 (846)
T KOG2066|consen 155 -----------VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DEDR 218 (846)
T ss_pred -----------eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCCe
Confidence 00122447999999 678899888776 99999999888777643222 23467776 4455
Q ss_pred EEEeeCCCeEEEeccc
Q 015301 200 IFSGSDDSLCKVWDRR 215 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~ 215 (409)
|+.| +..+|+|..++
T Consensus 219 LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEe-cCCeEEEEEEe
Confidence 6665 45578888876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=76.83 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=64.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
.....|.|++++|+.+.|+.|+.||+|.+||...+..... . ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5778999999999999999999999999999887633322 1 2236889999999999999999999999999755
Q ss_pred cc
Q 015301 118 AR 119 (409)
Q Consensus 118 ~~ 119 (409)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-06 Score=78.34 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=86.2
Q ss_pred EEEEEeCCCCcEEEEEe----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 88 ITDTSLSPDQRFLVYAS----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
.+-..|+|...++++++ ..|.|.||- ++++...-... +..+++++|+|..-.|+.|-.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~----------------P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY----------------PVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc----------------ceehhhhccChHHHHHhhcccc
Confidence 34467999999999886 457888874 33332211111 1137789999999889999889
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
|.+.+|...+.+.-.....|..+|..+.|+ ++|+.++++..-|.+.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 999999988777666667899999999999 999999999999999999864
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-05 Score=70.42 Aligned_cols=259 Identities=15% Similarity=0.184 Sum_probs=135.7
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeecccc----------cceEE-----------------EEEeC---CCCcEEEEEe
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKAL----------RWTIT-----------------DTSLS---PDQRFLVYAS 104 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~----------~~~v~-----------------~~~~s---~~~~~l~~~~ 104 (409)
+.+|+..|.++|+-+.+...+..+-.+... ...|. .+.+. .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 668888899999998877555443222110 00011 11111 2577887765
Q ss_pred c-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-----EEEEcCCCCeEEEEE-ecCeEEEEECCCCeee
Q 015301 105 I-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-----SVKFSTDGQELVAAG-SDNFIYVYDLQANKCS 177 (409)
Q Consensus 105 ~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~ 177 (409)
. +..|...+++..+......++..............++..|. .+=+.|||+.+...+ ..+.+.+.|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 3 45566666666555444443332211111111001111222 223455776554332 2567888898887776
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEee----------------------------------------CCCeEEEeccccc
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGS----------------------------------------DDSLCKVWDRRCF 217 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~----------------------------------------~dg~i~iwd~~~~ 217 (409)
..+.... ....++++ +++.++++.+ .++.|.+.|.+..
T Consensus 229 ~qV~Vdg-npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~ 306 (635)
T PRK02888 229 WQVMVDG-NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKA 306 (635)
T ss_pred EEEEeCC-CcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCcc
Confidence 6654322 33555666 5666665554 1234556664310
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
...+..+.....-......+.++|||+++++++. +.++.+.|+.+......... .+.
T Consensus 307 ~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----------------------~~~ 364 (635)
T PRK02888 307 ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----------------------KPR 364 (635)
T ss_pred ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----------------------Ccc
Confidence 0001122222223445678999999998877665 88999999988442111100 000
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
...+...+-. ......+|+++|+...+-..|..|..||+.+
T Consensus 365 ~~vvaevevG-------lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELG-------LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccC-------CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0001111100 0011336888898888888899999999876
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-05 Score=67.53 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=61.1
Q ss_pred CCCCCEEEEEe---------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 49 SNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 49 s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
|||+++++... ..+.+.|||++++.... +... ...+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 67888777632 24679999999973332 2222 33678899999999999886 67899998877643
Q ss_pred ccccceeceeeeeeeecCCC----Cc-ceeeEEEEEcCCCCeEEEEEe
Q 015301 120 ESLANVTEIHKGLDFSADGD----ED-EFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~----~~-~~~v~~~~~~~~~~~l~~~~~ 162 (409)
..+..-. ... .+....+ +. -..-..+.||||+++|+....
T Consensus 76 ~~lT~dg--~~~-i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 76 TQLTTDG--EPG-IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp EESES----TTT-EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred EEecccc--cee-EEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3222211 000 0000000 00 112356889999999887644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=90.06 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=125.3
Q ss_pred CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEeccccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCF 217 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 217 (409)
.+....+|++|+-+.+.|++|+..|.|+++++.+|.......+|.++|+.+.-+ .++..+++.+.-. -..+|++.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~-- 1175 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDAS-- 1175 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhccc--
Confidence 455679999999999999999999999999999999999999999999999988 7887777655433 46799974
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
..+...+.+.+ -.++.|+.....-+.|.......+||+.+...............+..
T Consensus 1176 -s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~----------------- 1233 (1516)
T KOG1832|consen 1176 -STGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN----------------- 1233 (1516)
T ss_pred -cccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc-----------------
Confidence 24444444432 35677876544445555556799999998544333221111111110
Q ss_pred cceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
....|+|+..+++ .|| .+||++..+.++.+...+..+ .-.|+|.|..++.-+.
T Consensus 1234 -------------------n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-- 1286 (1516)
T KOG1832|consen 1234 -------------------NLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-- 1286 (1516)
T ss_pred -------------------cccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech--
Confidence 1224666666665 344 467777766666654333222 2247777776665543
Q ss_pred eEEEEecCC
Q 015301 378 NIVRWEIPG 386 (409)
Q Consensus 378 ~i~iw~~~~ 386 (409)
|||+.+
T Consensus 1287 ---IwD~RT 1292 (1516)
T KOG1832|consen 1287 ---IWDMRT 1292 (1516)
T ss_pred ---hhhhHH
Confidence 566654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-06 Score=75.04 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=108.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.+.+++++ +++|+.|+.+|.|++++....- ..... |.. . ..+|.++++|+.||.|
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~----------------~s~-~-----~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD----------------HSS-S-----ILEGEYVASCSDDGKV 95 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc----------------ccc-c-----ccCCceEEEecCCCcE
Confidence 46666665 6899999999999999886542 11100 000 1 4589999999999999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCC----CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADE----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
.|-.+-+.+....+. ...++.+++++|. ....+++|+..| +.++.-+-. .......+..-.++|.++.|.
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--gnk~~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--GNKDSVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh--cCccceeeecCccceEEEEec--
Confidence 999998888776665 4578999999942 257899999988 877764321 112222455667899999996
Q ss_pred CCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 243 GRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
|++++-++.+| |++||+.......
T Consensus 170 g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 170 GNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred CcEEEEecCCC-cEEEeccccceee
Confidence 78888888777 9999998855433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-05 Score=65.95 Aligned_cols=251 Identities=14% Similarity=0.078 Sum_probs=129.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc-ccceec------------eeeee-------------eeecC--C
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARES-LANVTE------------IHKGL-------------DFSAD--G 138 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~-~~~~~~------------~~~~~-------------~~~~~--~ 138 (409)
.|+.+.|.++..-|+++...|.|.+|.+...+... ...... ....+ .|.+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999886543321 000000 00000 01110 0
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE--c------CCCCCeEEEEEeC----CC---CcEEEEe
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI--P------AHKSDVNTVCFAD----ET---GHLIFSG 203 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~------~~~~~v~~~~~~~----~~---~~~l~~~ 203 (409)
+...++|++++.|.-| ++++|..+|.+.|.|++....+..- . .....|+++.|.. .+ .-.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1236789999998555 7899999999999999888776652 1 1345688888862 22 2478899
Q ss_pred eCCCeEEEecccccccCCceeee----eeccccceeEEE-EcCC-C-------------------CeEEEEeCCCcEEEe
Q 015301 204 SDDSLCKVWDRRCFISKGRANGV----LMGHLEGITFID-SRRD-G-------------------RYFISNGKDQTTKLW 258 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~dg~i~iw 258 (409)
+..|.+.+|.+.-. ..+..... ...+.++|..+. ++.+ | .-++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~-~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPS-SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE--GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecC-CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999987410 11211111 113445555444 2211 0 113333345567777
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee-cCCCCEEEEEeCCCeE
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTGSSDNSV 337 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~v 337 (409)
...+.+ ......... .....+.+-... ...+..|++-..+|.|
T Consensus 241 ~~~~~k----------------------------------~~~K~~~~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 241 KPPKSK----------------------------------GAHKSFDDP--FLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -TT-------------------------------------EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred eCCCCc----------------------------------ccceeeccc--cccceEEEEeecccCCceEEEEEECCCcE
Confidence 665521 111111110 011111110000 1235678888999999
Q ss_pred EEEEccCCceEEEeccCC----cceeeeEEecCcCeEEeecC
Q 015301 338 YIYDLVSGAQVAKLDFHN----APVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 338 ~i~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~ 375 (409)
++|.+...+.+..++.+. ..+...+++++|..++-.+.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 999999999988876532 35667788999997766654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-06 Score=77.14 Aligned_cols=331 Identities=10% Similarity=0.024 Sum_probs=169.8
Q ss_pred eEEecCceeEeecc-----ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 7 VNYSGRGRFSAADS-----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 7 ~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.|..-+.+... ..-+..+.....|.+-..-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+.... .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv---~ 97 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV---V 97 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee---c
Confidence 45666665544322 234455555555544333344467799999988899998889999999877643332 3
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe-----
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE----- 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 156 (409)
..|..+|..+.|||+|..++++..-|.+.+|............+..... +..-...+...++++.-
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel---------~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHEL---------NDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHh---------hceeeEEEEecCCChHHhhhhh
Confidence 3466699999999999999999999999999886432222111111100 00112455566666421
Q ss_pred -EEEEEecCeEE-EEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 157 -LVAAGSDNFIY-VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 157 -l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
.++.+.+..+- .++.+......... |.+ .+++..++.++.+|+|+-.| +.+.......... .
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~-ksg--------v~~g~~F~~~~~~GtVyyvd-----q~g~~~~V~k~dS-~- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDE-KSG--------VPKGTEFLFAGKSGTVYYVD-----QNGRQRTVHKLDS-E- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhhcccc-ccC--------CCCCcEEEEEcCCceEEEEc-----CCCcEEEEEEccc-h-
Confidence 23333333332 22222111111111 111 16788888899999999888 2444433332211 1
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc-ccc-cccccccccccccceeccccCccceeeeecccc-eee
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR-LRD-YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRT 311 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (409)
..+-|.+....++..-.+-++.++-............. ... ....-..++.+... + .++.... ...
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-------G----vLr~~eKyg~e 301 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-------G----VLRKSEKYGLE 301 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-------c----cccCCcchhhh
Confidence 22334443333433333333333332221100000000 000 00000000000000 0 0000000 000
Q ss_pred eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-------ceEEEecc---CCcceeeeEEecCcCeEEeecCC
Q 015301 312 LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------AQVAKLDF---HNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-------~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
.-..+.+++++..+..|..|...|.+.+|--... +-...+++ ..+.|+.+.|.|-.+.++.-+..
T Consensus 302 ~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 302 LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 1122345577777899999999999999953221 22334433 35689999999976666555443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-05 Score=66.20 Aligned_cols=276 Identities=9% Similarity=0.069 Sum_probs=147.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc---ccceEE--EEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKA---LRWTIT--DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 126 (409)
+..+..++.++.+.-.|..+++.+.+...... ....+. .+... ++..++.++.++.|.-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999988866544322111 000010 01111 2267778888999999999998765444332
Q ss_pred ceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEE---------ecCeEEEEECCCCeeeeEEcCCCCC----------
Q 015301 127 EIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAG---------SDNFIYVYDLQANKCSLRIPAHKSD---------- 186 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~---------- 186 (409)
..... ...+. ...+. + ..++.++ .++.+..+|..+|+.+...+.....
T Consensus 140 ~~~~~----------~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~ 207 (488)
T cd00216 140 DQVPP----------GYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPD 207 (488)
T ss_pred CCcCc----------ceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCC
Confidence 21000 00010 01111 2 3444443 3678999999999988776432110
Q ss_pred ----------e-EEEEEeCCCCcEEEEeeCCC------------------eEEEecccccccCCceeeeeeccccce---
Q 015301 187 ----------V-NTVCFADETGHLIFSGSDDS------------------LCKVWDRRCFISKGRANGVLMGHLEGI--- 234 (409)
Q Consensus 187 ----------v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~v--- 234 (409)
+ ...++. +.+..++.++.++ .+.-+|.. +++..-....-....
T Consensus 208 ~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 208 RQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred cceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCccc
Confidence 0 123333 3456777776665 67777754 555554433111100
Q ss_pred ---eEEEEc----CCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 235 ---TFIDSR----RDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 235 ---~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
....+. -++. .++.++.+|.+...|.++++..-......
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------------------------------- 331 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------------------------------- 331 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------------------------------
Confidence 000111 1233 57778889999999998855433221100
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEE------------------EeCCCeEEEEEccCCceEEEeccCC--------cce
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYT------------------GSSDNSVYIYDLVSGAQVAKLDFHN--------APV 358 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~------------------~~~dg~v~i~d~~~~~~~~~~~~~~--------~~v 358 (409)
..+..+| ..++. ...+|.+.-.|+.+++.+-+..... .+.
T Consensus 332 ------------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 ------------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred ------------cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 0001111 11111 2245778888888887766654320 111
Q ss_pred eeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 359 RDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..-.....+..|+.++.||.|+.+|..+++..
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 11111124568888889999999999887764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.7e-06 Score=73.44 Aligned_cols=201 Identities=12% Similarity=0.116 Sum_probs=126.8
Q ss_pred EEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCC-
Q 015301 149 KFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKG- 221 (409)
Q Consensus 149 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~- 221 (409)
+|++++..++.|+.+|.|.+++- +-+.+..++.+... |..+... ...++|++.+.|+ .+++||+.....+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999988873 34445667777766 5555444 5557888877665 48999987432222
Q ss_pred -cee--eeeec-----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 222 -RAN--GVLMG-----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 222 -~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+. ..+.+ ...++.+++.+.+-+.+++|-.+|.|..+.-.-..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R----------------------------- 158 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR----------------------------- 158 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----------------------------
Confidence 222 12222 24578899999998999999999999988532211
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce-EEEeccCCcceeeeEEecCcCeEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ-VAKLDFHNAPVRDCCWHPIYPMLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s 372 (409)
.+-.+.-..|.... .++.+.+-.+++.++-...-..|.+|.+....+ ...+..|..++.|-++++....++.
T Consensus 159 ---Drgsr~~~~~~~~~----pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 159 ---DRGSRQDYSHRGKE----PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred ---ccccceeeeccCCC----CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 01111111222222 233344444566533333345699999874442 4557778889999999876664665
Q ss_pred ecCCCeEEEEecCCCc
Q 015301 373 SSWDCNIVRWEIPGIG 388 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~~ 388 (409)
++ +..|.+|+.+..+
T Consensus 232 a~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 232 AG-SEFLYFYDSDGRG 246 (933)
T ss_pred ec-CceEEEEcCCCcc
Confidence 54 3579999987543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-06 Score=70.97 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=60.5
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
...|.+++++|+...++.|+.||.|.+||...+... .....-.++.++|+ |++.++++|+..|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence 336999999999999999999999999998766433 22345668999999 899999999999999999964
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=65.35 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=65.9
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~ 111 (409)
..+.+|...|..++|||... ++..++.+.+|+|.|+++.......... ..+.+++|.-|. .+|..|-.+|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcceeEEeccCceEEE
Confidence 35667889999999999887 7788899999999999988555443322 379999998765 56677778999999
Q ss_pred EEcCCCccc
Q 015301 112 VDVGSSARE 120 (409)
Q Consensus 112 w~~~~~~~~ 120 (409)
||++..+..
T Consensus 263 yD~R~~~~~ 271 (463)
T KOG1645|consen 263 YDMRQPEGP 271 (463)
T ss_pred EEccCCCch
Confidence 999876643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00011 Score=63.78 Aligned_cols=185 Identities=15% Similarity=0.106 Sum_probs=97.7
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+....-....+.++|+|++++++ .||.-.|+......... .+.-....|.++++ +|+-...+.|.++.--
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--------cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 34455568899999999999885 47788888844331111 12455678998554 6666668889996432
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
+........... .+..+-. |..|...+ ++.|.+||+++++.+..+... +|..+.|+ +
T Consensus 98 ~~~~~k~i~~~~----------------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~ 154 (443)
T PF04053_consen 98 KNEVVKSIKLPF----------------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWS-D 154 (443)
T ss_dssp EE-TT-----SS-----------------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE--T
T ss_pred ccccceEEcCCc----------------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEE-C
Confidence 222211111111 1222322 77777665 458999999999999998743 38999999 8
Q ss_pred CCcEEEEeeCCCeEEEeccccc-----ccCC--ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEE
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCF-----ISKG--RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL 257 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~-----~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 257 (409)
++++++..+.+ .+.+++.... ...+ .....+......|.+..|..+ .++-.... .++.
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 88998888755 5777764310 0000 123333333567888888755 44444433 5655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-08 Score=84.13 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=132.9
Q ss_pred CCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEe----cCCEEEEE
Q 015301 40 NSRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYAS----ICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~~w 112 (409)
...+.|+++.-+. ..+++|..+|.|.+-.......... ....++....++++|++ |.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-eecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4567788876544 4788999999999988765422211 12334556789999998 556677663 46689999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+.-..+... ..|.. +......+++|..+.+++++|.....+.++|++... .....-.+..+..+..
T Consensus 135 di~s~ltvPke~-------~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 135 DINSLLTVPKES-------PLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITV 203 (783)
T ss_pred ecccccCCCccc-------ccccc---ccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhccccee
Confidence 998773311111 11111 011235688999889999999888899999997322 1111223456677788
Q ss_pred eCCCCcEEEEeeCCCeEEEec-ccccccCCceeeeeecc----ccceeEEEEcCCCC-eEEEEe-CCCcEEEeeCCCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWD-RRCFISKGRANGVLMGH----LEGITFIDSRRDGR-YFISNG-KDQTTKLWDIRKM 263 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~ 263 (409)
.|-.++++++-. ||.|.+|| .+. -..++..+... ...+..++|.|... .+++.. ..++|+++|+...
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 865888887765 99999999 431 22222222211 23488999998533 344444 4578999998753
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-08 Score=83.15 Aligned_cols=203 Identities=14% Similarity=0.209 Sum_probs=129.7
Q ss_pred eeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEee----CCCeEEEeccc
Q 015301 144 GIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGS----DDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 215 (409)
.+.|+++.- +...+++|..+|.|.+-.++...-. ...+++..+.++++|++-+.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 366666655 3356788888999999887654332 235678899999999987888888874 35679999986
Q ss_pred ccccCCceeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 216 CFISKGRANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
......+....+. +......+++|..+.+++++|.....+.++|++.....
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------------------- 189 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------------------- 189 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----------------------------
Confidence 4322222111222 23455668899988889999999999999999841110
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEc-cCC-ceEEEeccC----CcceeeeEEecCc
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDL-VSG-AQVAKLDFH----NAPVRDCCWHPIY 367 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~-~~~-~~~~~~~~~----~~~v~~~~~s~~~ 367 (409)
...+.. ..+.....+| .+.++++-. ||.|.+||. .+- +++..+... ...+..++|.|..
T Consensus 190 -----~~svnT--------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 190 -----VSSVNT--------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred -----hhhhhh--------hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 000000 0011123444 456776655 999999993 322 233333222 2248999999976
Q ss_pred C-eEEeecC-CCeEEEEecCCCc
Q 015301 368 P-MLISSSW-DCNIVRWEIPGIG 388 (409)
Q Consensus 368 ~-~l~s~~~-dg~i~iw~~~~~~ 388 (409)
. .|++... .++|+++++....
T Consensus 256 tglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred cchhhhhccCcceEEEecccccC
Confidence 6 6666654 4789999986543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-05 Score=64.73 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=113.5
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
-++.+.++|+|+|++..+......+.... ..- ...+.-...+|.+.++ +|+-...++|.|+.--....... ....
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~--~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~-i~~~ 108 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALA--WRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS-IKLP 108 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTT--TEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------S
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccC--Ccc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE-EcCC
Confidence 36889999999998875544444433111 111 1234456688988555 66666688899974322211111 1121
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
. .+..+-. |..|...+. +.|.+||+.+++........ +|..+.|++++++++..+.
T Consensus 109 ~---~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-----------------~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 109 F---SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-----------------AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp S----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS------------------E-EEEEE-TTSSEEEEE-S
T ss_pred c---ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-----------------CCcEEEEECCCCEEEEEeC
Confidence 1 2333332 777777764 48999999988765444332 3789999999999998875
Q ss_pred cCeEEEEECCCC-----------eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc
Q 015301 163 DNFIYVYDLQAN-----------KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL 231 (409)
Q Consensus 163 d~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 231 (409)
+ .+.+++.... .....+..-...|.+.+|. .+ -++++ +.. .++.+- . .....+..-.
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d-~fiYt-T~~-~lkYl~------~-Ge~~~i~~ld 232 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED-CFIYT-TSN-HLKYLV------N-GETGIIAHLD 232 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT-EEEEE--TT-EEEEEE------T-TEEEEEEE-S
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE-cC-EEEEE-cCC-eEEEEE------c-CCcceEEEcC
Confidence 5 5777765433 0222333225778999998 44 44444 333 676633 2 2222333334
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.++.-+.+.++.+.+.....|+.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 5677777888778888888999998887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00047 Score=56.39 Aligned_cols=249 Identities=14% Similarity=0.121 Sum_probs=131.2
Q ss_pred eEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeeeeeecccccc----eEEEEEeCCCCcEEEEEec--C
Q 015301 43 VYTSQFSNDGSFFVAASQ----------ESNIKVYNVDKNWKIQKDIETKALRW----TITDTSLSPDQRFLVYASI--C 106 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~--d 106 (409)
.-.+..|||++.+++++. .-.|.+||..+-.....+.....+.. ....++++.|++++++... .
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 344678999999887542 34699999998755444333322111 1234578889988887643 4
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEE----c
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRI----P 181 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~----~ 181 (409)
..|.|.|+...+......... +..+--+++ +.|.+-|.||.+.-..+. .|+...+. .
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG-----------------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG-----------------CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS-----------------EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred CeEEEEECCCCceeeeecCCC-----------------EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 578889998877644333221 222222223 347777889999888886 45544322 1
Q ss_pred CCCCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeEEEEe
Q 015301 182 AHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 182 ~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
....++ ..-++. ..+..++-.+.+|.|+--|+... .......+.. -.+.-.-+++++..+.|.+.-
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEeccCC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 112222 233444 44555555788999999887521 1111111110 012233455655444444321
Q ss_pred C--------CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 251 K--------DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 251 ~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
. |+ .|-++|+.+ .+.+..+... ..+.++.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t----------------------------------~krv~Ri~l~-------~~~~Si~ 295 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKT----------------------------------HKRVARIPLE-------HPIDSIA 295 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTT----------------------------------TEEEEEEEEE-------EEESEEE
T ss_pred cCCCCCCccCCceEEEEEECCC----------------------------------CeEEEEEeCC-------CccceEE
Confidence 1 11 344445444 2333333321 1233555
Q ss_pred ecCCCC-EEEEE-eCCCeEEEEEccCCceEEEecc
Q 015301 321 YSTAQK-YIYTG-SSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 321 ~s~~~~-~l~~~-~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
.+.+.+ +|++. ..++.+.+||..+++.+.++..
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 666554 55444 4579999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=57.04 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 144 GIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 144 ~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
.+..++|+|+.+ ++++....+.|..++. +|+.+..++.. .+....+++. .++.++++--.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 489999999755 5666666788888886 47877777533 3678999998 777666666668999999874211111
Q ss_pred ce--eeee-----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 222 RA--NGVL-----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 222 ~~--~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.. ...+ ..++..+..++|+|.++.|+.+-...-..+|.++.......
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 11 1111 13456689999999988888887776677777654110000
Q ss_pred cCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCceEEEeccCC---------cceeeeEEe
Q 015301 295 PHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN---------APVRDCCWH 364 (409)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---------~~v~~~~~s 364 (409)
-................-...+.+.| .+.+++....+..|..+| .+|+++..+.-.. ..--.|+|.
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ---eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 00000000000000001112334454 356777777888999999 6787766654222 245679999
Q ss_pred cCcCeEEeecCCCeEEEE
Q 015301 365 PIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw 382 (409)
++|++.++ ++-+..+++
T Consensus 231 ~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TT--EEEE-ETTTEEEEE
T ss_pred CCCCEEEE-cCCceEEEe
Confidence 99874444 456666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-05 Score=66.50 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCee------------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC------------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
....+.++|||+++++++. +.+|.|+|+++.+. +.+.+. .......+|. .+++...+-..|..|.
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD-g~G~aytslf~dsqv~ 399 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD-GRGNAYTTLFLDSQIV 399 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC-CCCCEEEeEeecceeE
Confidence 4778999999999887766 88999999987552 333333 2334567887 7888888888999999
Q ss_pred Eecccccc------cCCceeeeeeccccce-----eEEEEcCCCCeEEEEeC
Q 015301 211 VWDRRCFI------SKGRANGVLMGHLEGI-----TFIDSRRDGRYFISNGK 251 (409)
Q Consensus 211 iwd~~~~~------~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~ 251 (409)
.|++.... .....+..+.-|-.+- ..=.-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 99975210 0012223233332222 22223678888887654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00051 Score=53.08 Aligned_cols=143 Identities=15% Similarity=-0.022 Sum_probs=91.8
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
..+++.|+..+.+.--|..+++.......... +.+-+.- -|++++.|+..|.+++.+.++|+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R----------------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR----------------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce----------------eeeeeEE-ECCEEEEEEccCcEEEEEecchhh
Confidence 45677778888888888888775443332221 2222222 466799999999999999999988
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
...+.. .+.|.+-+-..+++.++..|+.|++.+..|.+ ...++...+-..+...+-+..|-...|..+...|.+.
T Consensus 86 ~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 86 IWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred eeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 877753 23344333334789999999999999999976 5555555444333334444555333455555556555
Q ss_pred EeeCC
Q 015301 257 LWDIR 261 (409)
Q Consensus 257 iwd~~ 261 (409)
--..+
T Consensus 161 avt~~ 165 (354)
T KOG4649|consen 161 AVTKN 165 (354)
T ss_pred EEccC
Confidence 44443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00015 Score=62.77 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCeEEEEEe---c-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeE--EEecccc
Q 015301 144 GIFSVKFSTDGQELVAAGS---D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLC--KVWDRRC 216 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~---d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i--~iwd~~~ 216 (409)
.+..-+|+|+++.++.... . ..+.++|+++++....+. ..+.-...+|+ |+++.| ++...||.. .+.|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLD- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCC-CCCCEEEEEECCCCCccEEEEcCC-
Confidence 4677789999887665532 2 469999999887655543 23334567899 555554 556667764 455553
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCc--EEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
... ...+..-.+.-..-.|+|||+.++..+. .|. |.++|.+...
T Consensus 271 ---~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----------------------------- 317 (425)
T COG0823 271 ---GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----------------------------- 317 (425)
T ss_pred ---CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----------------------------
Confidence 222 3333333333346679999998887654 454 4444444311
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-Ce--EEEEEccCCceEEEeccCCcceeeeEEecCcCeE
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~--v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
...+.... .....+.+||||++++..+.. |. |.+.|+.++..+..+. +......-.|.++++.+
T Consensus 318 ------~~riT~~~------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 318 ------VTRLTFSG------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMI 384 (425)
T ss_pred ------eeEeeccC------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceE
Confidence 11111111 111266799999999887753 44 6777776665444443 33344456777887755
Q ss_pred Eee
Q 015301 371 ISS 373 (409)
Q Consensus 371 ~s~ 373 (409)
+..
T Consensus 385 ~~~ 387 (425)
T COG0823 385 MFS 387 (425)
T ss_pred EEe
Confidence 543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0016 Score=56.60 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=100.3
Q ss_pred EEEECCCCCEEEEEeCC----------C-cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 45 TSQFSNDGSFFVAASQE----------S-NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d----------~-~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
-++.+|.|..+|....+ . .|.||+.... .+.... ... +.|.++.|+.+.. |++-..||.++++|
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~-w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIP-WDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEE-ECC--CCEEEEEECCCCe-EEEEEcCCEEEEEe
Confidence 34566767666665443 2 4999987655 444432 222 4899999998654 55666899999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEE---cCCCC----
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---PAHKS---- 185 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~---~~~~~---- 185 (409)
+.... ........... .-....+....+..+| ++.-..++.+.+..-.... ....+ +....
T Consensus 108 ~~G~~---~fsl~~~i~~~------~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~ 176 (410)
T PF04841_consen 108 LFGEF---QFSLGEEIEEE------KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHW 176 (410)
T ss_pred CCCce---eechhhhcccc------CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccc
Confidence 86443 11111100000 0001112233344455 3333344555544322211 11111 11000
Q ss_pred --CeEE-EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 186 --DVNT-VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 186 --~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.... ..++ .+....+....++.+.+.+-. .... + ...+++..++.||++++++.-..+|.+.+.+..-
T Consensus 177 ~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 177 WPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1111 1233 344444444555666644421 1111 1 1246899999999999999999999988886543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-05 Score=67.03 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=98.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|.--+++..+++++.|+.-|.+++|+-..+.......-. ....+.....+++..++|.|+..|.|
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--------------~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--------------ATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC--------------ccceEEEEEecchhHhhhhhcCCceE
Confidence 5666667778999999999999999998877654333211 12246677888899999999999999
Q ss_pred EEEECCCCeeeeE-E-----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 167 YVYDLQANKCSLR-I-----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 167 ~v~d~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
.++-+....+... + +.|...|++++|+ +++..+++|...|+|..-.+.....-....+.+....+.|..+.+.
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9998876432211 1 3478899999999 9999999999999998887652111112223333345667677665
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00026 Score=61.26 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCcEEEEEe---cC-CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 87 TITDTSLSPDQRFLVYAS---IC-AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~---~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.+..-+|+|+++.++... .. ..+.++++.+++......... .-..-+|+|||+.|+....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------------~~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------------NNGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------------ccCCccCCCCCCEEEEEEC
Confidence 677789999998877653 23 468999999887655554222 2345689999998877654
Q ss_pred -cC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 -DN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 -d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
|| .|+++|+.++... .+....+.-+.-.|+ |+|+.++- .+..|.-.||-.. ..+.....+......-..-.
T Consensus 258 rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~---~~g~~~~riT~~~~~~~~p~ 332 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYD---LEGSQVTRLTFSGGGNSNPV 332 (425)
T ss_pred CCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEEC---CCCCceeEeeccCCCCcCcc
Confidence 44 5777788776633 344333333466788 67766655 4456665555443 12333333433333333677
Q ss_pred EcCCCCeEEEEeCC-Cc--EEEeeCCC
Q 015301 239 SRRDGRYFISNGKD-QT--TKLWDIRK 262 (409)
Q Consensus 239 ~~~~~~~l~~~~~d-g~--i~iwd~~~ 262 (409)
|+|||++|+..+.. |. |.+.|+.+
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCC
Confidence 99999999887753 43 44555444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0022 Score=56.49 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=106.5
Q ss_pred eEEEEECCCCCEEEEE-eCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----------
Q 015301 43 VYTSQFSNDGSFFVAA-SQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----------- 106 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~-~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------- 106 (409)
+....+||||+++|.+ +.. ..++++|+++++.+...+.... ...+.|.++++.|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999998854 333 4599999999965544322211 2239999998887766532
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---c-CeEEEEECCCC----eeee
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---D-NFIYVYDLQAN----KCSL 178 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~v~d~~~~----~~~~ 178 (409)
..|+.|++.+............. .......+..++++++|+.... + ..+.+.++..+ ....
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~-----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPD-----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TT-----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cEEEEEECCCChHhCeeEEeecC-----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 34788888776543221111110 0112567888999999876544 2 46888888764 2233
Q ss_pred EEcCCCCCeE-EEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCC
Q 015301 179 RIPAHKSDVN-TVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQ 253 (409)
Q Consensus 179 ~~~~~~~~v~-~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 253 (409)
.+......+. .+... ++.+++... ..+.|.-.++..... ......+..+...+.-..+...+.+|+... .++
T Consensus 271 ~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 3333333443 34333 444444432 235666666542111 012224555555333233333355555443 343
Q ss_pred --cEEEeeCC
Q 015301 254 --TTKLWDIR 261 (409)
Q Consensus 254 --~i~iwd~~ 261 (409)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 67888877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0016 Score=58.35 Aligned_cols=258 Identities=12% Similarity=0.044 Sum_probs=131.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEe---------cCCEEEEEEcCCCcccc
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYAS---------ICAIVNIVDVGSSARES 121 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~~w~~~~~~~~~ 121 (409)
..++.++.++.|+-+|.++++.+.+...... ...-..+.-+| .+..+++++ .++.+..+|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~-~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ-VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCC-cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 5777788899999999999876655332211 00000111112 124454543 36788999998887654
Q ss_pred ccceeceeeeeeeecCCC-----Ccc-eee-EEEEEcCCCCeEEEEEecC------------------eEEEEECCCCee
Q 015301 122 LANVTEIHKGLDFSADGD-----EDE-FGI-FSVKFSTDGQELVAAGSDN------------------FIYVYDLQANKC 176 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-----~~~-~~v-~~~~~~~~~~~l~~~~~d~------------------~i~v~d~~~~~~ 176 (409)
......... ........ .+. ..+ ...++.+.+..+++++.++ .|.-+|.++++.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCc-CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 433321100 00000000 000 011 1234555566777776554 799999999999
Q ss_pred eeEEcCCCCCe------EEEEEe---CCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 177 SLRIPAHKSDV------NTVCFA---DETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 177 ~~~~~~~~~~v------~~~~~~---~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
+...+.-.... ....+. +-++ ..++.++.+|.+...|.+ +++.+...... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence 88764211111 111111 0123 267888899999999965 66655543221 11123333 2
Q ss_pred eEEEE------------------eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 245 YFISN------------------GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 245 ~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
.+..+ ..+|.+.-.|+.+++..-....... .....+...
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~-----------------------~~~~~~g~~ 396 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI-----------------------RDSWNIGFP 396 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc-----------------------ccccccCCc
Confidence 22221 1245666666666432221110000 000000000
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
. .. -.+. ..+.+|++++.||.|+.+|.++|+.+.+.+.
T Consensus 397 ~-----~~--~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 H-----WG--GSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred c-----cC--cceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 00 0011 1367899999999999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00017 Score=61.77 Aligned_cols=223 Identities=12% Similarity=0.015 Sum_probs=112.9
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-------------------------------------------eeEE
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-------------------------------------------SLRI 180 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------------------------------------~~~~ 180 (409)
.|+.+.|+++...|++|...|.|.+|.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999988899999999999986532110 1112
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--eec------cccceeEEEEcC-----CC---C
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--LMG------HLEGITFIDSRR-----DG---R 244 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~ 244 (409)
....++|++++.+ +--+++.|..+|.+.|.|+| ....+.. +.. ....++++.|.. |+ -
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~R----GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLR----GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETT----TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECC----CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 2346889999987 66699999999999999988 2222222 111 234577777752 33 3
Q ss_pred eEEEEeCCCcEEEeeCCCCccc-ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee---e
Q 015301 245 YFISNGKDQTTKLWDIRKMSSN-TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP---E 320 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 320 (409)
.+++|...|.+.+|.+.-.... ............+ ..-..+..+....... ....-. .
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---------------~~i~~I~~i~~~~G~~---a~At~~~~~~ 218 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---------------SPILSIIPINADTGES---ALATISAMQG 218 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------------------EEEEEETTT--B----B-BHHHHHG
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---------------CceEEEEEEECCCCCc---ccCchhHhhc
Confidence 6888999999999988521110 0000000000000 0000011110000000 000000 0
Q ss_pred ecC--CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-----cCcCeEEeecCCCeEEEEecCCCccc
Q 015301 321 YST--AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-----PIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 321 ~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.++ .-.-++....+..++++...+.+.........-....+.+- ..+..|++-..+|.|+++.++..++.
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 000 01123333446679999998887766554222233444552 34558888889999999999987664
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00024 Score=47.50 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=68.5
Q ss_pred eEEEEEcC---CC-CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 145 IFSVKFST---DG-QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
|+++++.. +| +.|++|+.|..|++|+- .+.+..+.. ...|++++-. . +..++.+..+|+|-+|+ .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~-~-~~~F~Y~l~NGTVGvY~------~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSL-G-GGRFAYALANGTVGVYD------R 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEc-C-CCEEEEEecCCEEEEEe------C
Confidence 45555554 32 57999999999999984 456666663 5678888877 3 36789999999999998 3
Q ss_pred CceeeeeeccccceeEEEE-cCCC---CeEEEEeCCCcEEE
Q 015301 221 GRANGVLMGHLEGITFIDS-RRDG---RYFISNGKDQTTKL 257 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~-~~~~---~~l~~~~~dg~i~i 257 (409)
...+...+.... +.++.+ ..++ ..|++|-.+|.|-+
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444444443333 555554 3332 26888888887743
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=54.01 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=88.9
Q ss_pred CCCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC
Q 015301 95 PDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA 173 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 173 (409)
..++.|+.|+.+| +.+++.... ....... ...|..+...|+-+.+++-+ |+.+.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-----------------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-----------------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee-----------------cceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3578899998888 889988222 1111111 11488899998877766664 59999999876
Q ss_pred CeeeeE--------------EcCCCCCeEEEE-EeCCCCcEEEEeeCCCeEEEecccccccCC-ceeeeeeccccceeEE
Q 015301 174 NKCSLR--------------IPAHKSDVNTVC-FADETGHLIFSGSDDSLCKVWDRRCFISKG-RANGVLMGHLEGITFI 237 (409)
Q Consensus 174 ~~~~~~--------------~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~ 237 (409)
-..... .......+...+ -....+...++......|.+|......... ...+.+. -.+.+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 544331 111233445554 112344444444555689999876321222 3334433 34778889
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+|. ++.++.+..++ ..+.|+.+...
T Consensus 145 ~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 145 AFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 998 55677776554 88889886544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00097 Score=60.50 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=105.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-CEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNI 111 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~~ 111 (409)
....+...++||||+.+|... .|+.-.||-...+........ +. ..+.-.|+|+|+.|.+.... ..+++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CC--CCCCceECCCCCceEEEecCcceEEE
Confidence 334688999999999887654 244334443332222222221 11 36778999998888777533 22222
Q ss_pred E-----------EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE---EECCCCeee
Q 015301 112 V-----------DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV---YDLQANKCS 177 (409)
Q Consensus 112 w-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~~ 177 (409)
. +++.++... .....|..+.|||||..++... ++.|++ -....|+..
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~------------------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS------------------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred eccCCCceEEEEeccCchhhh------------------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee
Confidence 2 222221111 1123599999999999988765 577877 444455411
Q ss_pred e----EE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEe
Q 015301 178 L----RI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 178 ~----~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 250 (409)
. .+ ..-...+.++.|. .++.+ +++..++...+|.+.. .+.....+.. ...++..++-+++ .++...
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred ecccEEeecccCCccccceEe-cCCEE-EEEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 1 12 2233346889998 66664 4556555555666531 1222222122 3566777777763 455556
Q ss_pred CCCcEEE
Q 015301 251 KDQTTKL 257 (409)
Q Consensus 251 ~dg~i~i 257 (409)
.+|.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6664433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.004 Score=52.71 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=115.7
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC----CCeEEEEEe---------c-CeEEEEECC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD----GQELVAAGS---------D-NFIYVYDLQ 172 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~---------d-~~i~v~d~~ 172 (409)
..|++.|..+.+........... +...+..+.+..+ ..+|++|+. . |.|.++++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E-----------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~ 70 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE-----------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS 70 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE-----------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred cEEEEEeCCCCeEEEEEECCCCc-----------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence 35777777666544333322211 1112344444432 567887765 2 889999998
Q ss_pred CC----eeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--cceeEEEEcCCCC
Q 015301 173 AN----KCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--EGITFIDSRRDGR 244 (409)
Q Consensus 173 ~~----~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 244 (409)
.. ..+..+ ....++|++++-. ++. |+++. .+.|.+|++. ....+.....+. ..+.++... ++
T Consensus 71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 71 ESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KN 140 (321)
T ss_dssp SS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred cccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--cc
Confidence 84 112211 2357889999877 444 43333 4789999986 222122222222 345555544 66
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
+++.|.....+.++..+.. ...+..+...... ..+.+..+-++
T Consensus 141 ~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~----~~v~~~~~l~d 183 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQP----RWVTAAEFLVD 183 (321)
T ss_dssp EEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-----BEEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCC----ccEEEEEEecC
Confidence 8999988888888855431 1112222221111 12334445445
Q ss_pred CCEEEEEeCCCeEEEEEccC-------Cc--e--EEEeccCCcceeee---EEecC--cC------eEEeecCCCeEEEE
Q 015301 325 QKYIYTGSSDNSVYIYDLVS-------GA--Q--VAKLDFHNAPVRDC---CWHPI--YP------MLISSSWDCNIVRW 382 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~-------~~--~--~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~iw 382 (409)
++.++++..+|.+.++.... +. . +..+. ....|+++ ++.|. +. .++-++.+|.|...
T Consensus 184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 56899999999999998763 12 2 22332 34567777 55552 21 37777889998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0024 Score=50.63 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=115.3
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.. ....+.. ....+.+..++++.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-iPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-IPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-ecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 456666699999999999998888777777776555644433 3333322 45678888888888888889999999887
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee---eEEcCC-------CC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAH-------KS 185 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~-------~~ 185 (409)
........... .+.+..... ...+...++|.|....|..+-...-+.|+........ .....+ -.
T Consensus 159 ~~t~~~~~~~~----~i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 159 ADTTVISAKVQ----KIPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred CCccEEeccce----EEeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 66432222211 111111111 1446888999999888888888777777766533211 111111 24
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.|.++.|++..+.+++-+.+++.+.-.|..
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecC
Confidence 578889998888899999899988888863
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0055 Score=53.43 Aligned_cols=199 Identities=11% Similarity=0.078 Sum_probs=98.1
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc--cCCceeeeeeccccceeEEEEcCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI--SKGRANGVLMGHLEGITFIDSRRD 242 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 242 (409)
.|.+|+. .|+.+.++.-..+.+.++.|+ . ...|++...||.+++||+.... ..+.......-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 5999996 466677665445899999998 4 4556677899999999974111 000001001111111222233334
Q ss_pred CCeEEEEeCCCcEEEeeCCCCc-ccc---ccccccccccccccc----ccccccceeccccCccceeeeecccc-eeeee
Q 015301 243 GRYFISNGKDQTTKLWDIRKMS-SNT---TDNSRLRDYDWDYRW----MEYPSYARRLKHPHDQSLATYKGHSV-LRTLI 313 (409)
Q Consensus 243 ~~~l~~~~~dg~i~iwd~~~~~-~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (409)
|-.++ ..++.+.+.+--... ... ..........+.... .........+....+..+..+..+.. .....
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~ 216 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSD 216 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCC
Confidence 53333 334444333221111 000 000000000000000 00011111222222333333332221 00011
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-CcceeeeEEecCcC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYP 368 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 368 (409)
..+..++.||++++||.-..+|.+.+.+..-.+.+.++... ......+.|.-+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 24567789999999999999999999987666666666543 34567778876544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=43.39 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=34.4
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0059 Score=52.84 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=157.2
Q ss_pred CeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
....+...|++..+.... ....+..-+.... .......... .....++.++.++.+. ....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeeccCCC--ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 566778888886554433 2224555554421 2111111111 2456778888887544 445568899999665554
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
........ ....++++++++.+.++.. ++.+.+.|-.+.+..........+ ..+++. ++
T Consensus 109 ~~~~~vG~----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p~ 170 (381)
T COG3391 109 LGSIPVGL----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-PD 170 (381)
T ss_pred eeEeeecc----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-CC
Confidence 33222221 3667999999988887766 689999999999888876544444 899999 77
Q ss_pred CcEEEEee-CCCeEEEecccccccCCceee-e---eeccccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCccccc
Q 015301 197 GHLIFSGS-DDSLCKVWDRRCFISKGRANG-V---LMGHLEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTT 268 (409)
Q Consensus 197 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 268 (409)
++.++... .++.+.+.|.. ...... . ...-......+.++|++.++.+.... +.+...|..+......
T Consensus 171 g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 77555544 78999999954 222221 0 11122334668899999976655443 5788888776221111
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCCce
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSGAQ 347 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~~~ 347 (409)
. ..... . .......+|+|+.+.+.... +.+.+.|..+.+.
T Consensus 247 ~---------------------------------~~~~~-----~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 247 D---------------------------------LPVGS-----G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred c---------------------------------ccccc-----C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 0 00000 0 11233577889988888554 8899999988877
Q ss_pred EEEeccCCc---ceeeeEEecC
Q 015301 348 VAKLDFHNA---PVRDCCWHPI 366 (409)
Q Consensus 348 ~~~~~~~~~---~v~~~~~s~~ 366 (409)
......... .+..+++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 288 VKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeecccccccccceeccceee
Confidence 766543322 3445555543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.01 Score=53.59 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=105.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceE-------EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTI-------TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v-------~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|+-.|..+++.+.+....... .... ..+++ .+..+++++.++.+.-.|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 456667777888999999988666553221110 0010 01122 2346777888999999999998875444
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCC------------
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKS------------ 185 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~------------ 185 (409)
........ ..+.+.-.--++ .++++.. +|.|.-+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~-----------~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~ 214 (527)
T TIGR03075 147 KNGDYKAG-----------YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPV 214 (527)
T ss_pred cccccccc-----------ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccc
Confidence 33211100 001110000134 4555432 68899999999988766532110
Q ss_pred -------------------Ce-EEEEEeCCCCcEEEEeeCC-----C-----------eEEEecccccccCCceeeeeec
Q 015301 186 -------------------DV-NTVCFADETGHLIFSGSDD-----S-----------LCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 186 -------------------~v-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
.+ ..+++. +..++++.+..+ + .|.-.|++ +++..-.++.
T Consensus 215 ~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q~ 289 (527)
T TIGR03075 215 GGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQT 289 (527)
T ss_pred ccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeeeC
Confidence 11 123555 445555555422 2 33444432 4554444433
Q ss_pred cccce---------eEEEEcCCCC---eEEEEeCCCcEEEeeCCCCccc
Q 015301 230 HLEGI---------TFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 230 ~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
....+ .-+.+..+|+ .++.+..+|.+.+.|-++++..
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22111 1222334665 6778999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0077 Score=50.98 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=104.7
Q ss_pred cEEEEEcCCCeeeeeee-ecccccceEEEEEeCCC----CcEEEEEec---------C-CEEEEEEcCCC-cccccccee
Q 015301 63 NIKVYNVDKNWKIQKDI-ETKALRWTITDTSLSPD----QRFLVYASI---------C-AIVNIVDVGSS-ARESLANVT 126 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~----~~~l~~~~~---------d-g~i~~w~~~~~-~~~~~~~~~ 126 (409)
.|++.|..+.+.+.... ....+-..+..+.+..+ ..+|++|+. . |.|.++++... .........
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888877765443321 22222223334445443 578887752 2 89999999884 100011100
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEc-CCCCCeEEEEEeCCCCcEEEEee
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIP-AHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
.. . ...++|++++-- ++. |+++ ..+.|.+|++...+ ....-. .....+.++... ++++++|.
T Consensus 83 --~~-~-------~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD 146 (321)
T PF03178_consen 83 --HS-T-------EVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGD 146 (321)
T ss_dssp --EE-E-------EESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEE
T ss_pred --EE-E-------eecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEE
Confidence 00 0 113368888766 444 4444 35889999998877 443322 133467777765 56899999
Q ss_pred CCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....+.++..+. ....+..+.. ....++++.+-++++.++.+..+|.+.++....
T Consensus 147 ~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 147 AMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 888888886541 2222222222 244578888876667899999999999998764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0013 Score=59.62 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=98.1
Q ss_pred ceeeEEecCceeEeecc---------ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCe
Q 015301 4 GREVNYSGRGRFSAADS---------CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVDKNW 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---------~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~~~~ 73 (409)
....++||||+.++... ...++..-.......+.. ....+.-.|+|||+.+++.... ..+++.+-....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence 45678999998765433 112222211222233322 2248899999999988887543 222232221111
Q ss_pred eeeee-eec---c-cccceEEEEEeCCCCcEEEEEecCCEEEE---EEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 KIQKD-IET---K-ALRWTITDTSLSPDQRFLVYASICAIVNI---VDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ~~~~~-~~~---~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
.+... ... . .....|..+.|||||..++... ++.|.+ -....+. .......... . .....+
T Consensus 431 ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~------~---~l~~~~ 499 (591)
T PRK13616 431 QLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVG------P---GLGDTA 499 (591)
T ss_pred eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEee------c---ccCCcc
Confidence 11100 000 0 1234799999999999998776 577777 3333333 1111111000 0 111135
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEE
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKV 211 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 211 (409)
.++.|..++.++ ++..++.-.+|.+.- |.....+.. ...++..++-. + ..++....+|.+.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~-~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS-P--STVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecC-C--ceEEEEcCCceEEe
Confidence 789999999854 555554444554321 222222232 25667777766 3 34556666665444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=59.46 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeeeEEecCcCeEEee--cCCCeEEEEecCCCcccC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISS--SWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~~~~ 391 (409)
++.+..+++.||.|+.|++.-.+.+...-.|. .++..+..+..++.|+.+ |.|..++.|++......+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 45688999999999999999999888887787 677777777778888888 889999999998765543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0077 Score=49.81 Aligned_cols=204 Identities=17% Similarity=0.126 Sum_probs=112.1
Q ss_pred EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee--cccccceEEEEEeCCCCcEE
Q 015301 23 VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE--TKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 23 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 100 (409)
.+.++-+.......-.+.+.+.++..-.++..|+++. .| +.+++.+.+........ ........+.....|+|.+.
T Consensus 48 ~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 48 RIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred eEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 4455545433333333444455554444444555553 33 77777765544222111 11122356778888998877
Q ss_pred EEEec-----------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEE
Q 015301 101 VYASI-----------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYV 168 (409)
Q Consensus 101 ~~~~~-----------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v 168 (409)
+.... -|.++.++. .+....... .+-...+.++||||++.|+.+.. .+.|.-
T Consensus 126 fgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 126 FGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---------------DDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred EeCCCccccCccccCCcceEEEEcC-CCCEEEeec---------------CcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 75433 122333332 121111111 11123678999999998888766 377888
Q ss_pred EECCC--Cee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 169 YDLQA--NKC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 169 ~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+++.. +.. ........+..-.++.. .++++.+++..+| .|..|+. .++.+..+.-+...+++++|-
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECC-----CCcEEEEEECCCCCCccceEe
Confidence 87752 111 11122344556667776 7788776555554 8999984 477777777666778888884
Q ss_pred -CCCCeEEEEe
Q 015301 241 -RDGRYFISNG 250 (409)
Q Consensus 241 -~~~~~l~~~~ 250 (409)
|+.+.|...+
T Consensus 264 G~~~~~L~iTs 274 (307)
T COG3386 264 GPDLNTLYITS 274 (307)
T ss_pred CCCcCEEEEEe
Confidence 3445444433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.01 Score=51.04 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=59.3
Q ss_pred EEEeCCCCcEEEEEecCCEEEE---EEcCCCc-cccccceeceeeeeeeecCCCC-cceeeEEEEEcC-----------C
Q 015301 90 DTSLSPDQRFLVYASICAIVNI---VDVGSSA-RESLANVTEIHKGLDFSADGDE-DEFGIFSVKFST-----------D 153 (409)
Q Consensus 90 ~~~~s~~~~~l~~~~~dg~i~~---w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----------~ 153 (409)
.++.+|++..||.+..+..+.+ |+..... ....... .+...... ....|+++.+-| |
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~-------~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~d 78 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSI-------SWSGPLDDEPGECITSILCLPLSSQKRSTGGPD 78 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEE-------EeeeeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence 4678899999999987776555 5432211 1111110 01111111 113466665543 4
Q ss_pred CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
...+++|..+|.|++|.. +|..+..-..|..+|..+.+.
T Consensus 79 w~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred cEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 578999999999999996 677766666689999999886
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.011 Score=51.09 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEecccccccC
Q 015301 145 IFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISK 220 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 220 (409)
...++.++.+..+.+. ..+..|.+.|..+.+......... ....++++ ++++.++++.. ++.+.+.|. ..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~----~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDA----AT 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeC----CC
Confidence 4567888888755544 446899999988877776664332 56788998 66666655544 688888884 35
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
.........-..+ ..++++|+|..++... .++.|.+.|........ ... ...
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~-------------------------~~~ 202 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV-------------------------GSL 202 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc-------------------------ccc
Confidence 5555554333334 8899999999666555 68899999976532110 000 000
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCc-ceeeeEEecCcCeEEeec-
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNA-PVRDCCWHPIYPMLISSS- 374 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~- 374 (409)
+... .......++|+|+.+.+.... +.+...|..++.....-..-.. ....+..+|+|+.+....
T Consensus 203 ~~~~----------~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 203 VGVG----------TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred cccC----------CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 0111 111234678889876665544 5899999988877665221222 456788999999777763
Q ss_pred CCCeEEEEecCCCc
Q 015301 375 WDCNIVRWEIPGIG 388 (409)
Q Consensus 375 ~dg~i~iw~~~~~~ 388 (409)
..+.+.+-|.....
T Consensus 273 ~~~~V~vid~~~~~ 286 (381)
T COG3391 273 QGGTVSVIDGATDR 286 (381)
T ss_pred CCCeEEEEeCCCCc
Confidence 44788888776643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=42.21 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=31.6
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN 68 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 68 (409)
..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35568899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0095 Score=49.29 Aligned_cols=222 Identities=11% Similarity=0.106 Sum_probs=122.8
Q ss_pred EEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE
Q 015301 91 TSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 169 (409)
Q Consensus 91 ~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 169 (409)
..|.++...|+.+ -..+.|.-|+..+++........ .+.++..-..+..|+++. ..+.++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-----------------~~~~~~~~d~~g~Lv~~~--~g~~~~ 90 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-----------------GFSSGALIDAGGRLIACE--HGVRLL 90 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-----------------CcccceeecCCCeEEEEc--cccEEE
Confidence 3577777755544 46678888888766433222211 233333333444454442 346777
Q ss_pred ECCCCeeeeEEc----C-CCCCeEEEEEeCCCCcEEEEeeC-----------CCeEEEecccccccCCceeeeeeccccc
Q 015301 170 DLQANKCSLRIP----A-HKSDVNTVCFADETGHLIFSGSD-----------DSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 170 d~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
+.+++..+..+. + -....+.+... +++.+.++... -|.++.+| ..+........+-..
T Consensus 91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~-----p~g~~~~l~~~~~~~ 164 (307)
T COG3386 91 DPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVD-----PDGGVVRLLDDDLTI 164 (307)
T ss_pred eccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEc-----CCCCEEEeecCcEEe
Confidence 776665533321 1 12345667777 66766665433 13333333 134555555555666
Q ss_pred eeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc-eeeeecccceee
Q 015301 234 ITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS-LATYKGHSVLRT 311 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 311 (409)
-+.++||||++.|+.+.. .+.|.-|++........ ++. ...+.... ..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~--G~ 214 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEP--GL 214 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCC--CC
Confidence 788999999988777765 47788887753100000 000 00111000 00
Q ss_pred eeEEEEeeeecCCCCEEEEEeCCC-eEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEe
Q 015301 312 LIRCYFSPEYSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLIS 372 (409)
Q Consensus 312 ~~~~~~~~~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 372 (409)
.-..+...+|.+-+++..+| .|.+|+.. ++.+..+..+...+++++|- |+.+.|+.
T Consensus 215 ----PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 215 ----PDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ----CCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 01123445677775554454 89999987 99999998777888999995 44454443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0026 Score=42.66 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=62.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 43 VYTSQFSN---DG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 43 v~~~~~s~---~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|+++++.. || +.|++|+.|..|++|+-+. .+....+ ...|+++.-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE----TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec----ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 56666644 33 5799999999999998653 3333222 225888877765 568889999999888763322
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcC---CC-CeEEEEEecCeEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DG-QELVAAGSDNFIY 167 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~ 167 (409)
.. ... ...+.++.+.. +| ..|++|-.+|.|-
T Consensus 75 WR----iKS--------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR----IKS--------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----ecc--------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11 111 01244454433 22 3688888888774
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.1e-05 Score=64.23 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=63.8
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee-eeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||.|=.||+|++.|++.+...
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4577778999999999999999987 888999988888888 9999999999999999999999999887654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.013 Score=49.22 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=104.6
Q ss_pred EeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 92 SLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 92 ~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+|.+||+.|+.++. ...+.+.|+.+++..++...... ......++|+.+.++-......|.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~---------------~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD---------------NTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----------------TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC---------------CccceEEecCCCeEEEEECCCeEEE
Confidence 57788977776654 44688888888876554432211 1223556788887766655678999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEe-CCCCcEEEEeeC---C-------------------CeEEEecccccccCCceee
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFA-DETGHLIFSGSD---D-------------------SLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~---d-------------------g~i~iwd~~~~~~~~~~~~ 225 (409)
.|+++.+....+......+....|. ..++..++-.-. | ..|...|+ ..++ ..
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl----~tG~-~~ 181 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL----KTGE-RK 181 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET----TT---EE
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC----CCCc-ee
Confidence 9999988766565555555555664 244444433211 1 11222222 1222 23
Q ss_pred eeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 226 VLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
.+......+..+.|+|....+++-|..| .-+||-++... ...
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------------------------------~~~ 228 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------------------------------SNV 228 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------------------------
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------------------------------Ccc
Confidence 3333455677888998655455444332 23667665421 111
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEe-----CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-----SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW 375 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 375 (409)
..+..+... ..+..--|+|||..|.--+ .+..|.-+|+.+++....... .....+.-++|+++++-=+.
T Consensus 229 ~~v~~~~~~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 229 KKVHRRMEG----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EESS---TT----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred eeeecCCCC----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCC
Confidence 222222111 1222335888888776532 245677788888765433222 24456667788887765444
Q ss_pred C
Q 015301 376 D 376 (409)
Q Consensus 376 d 376 (409)
|
T Consensus 303 d 303 (386)
T PF14583_consen 303 D 303 (386)
T ss_dssp -
T ss_pred C
Confidence 3
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0013 Score=60.73 Aligned_cols=140 Identities=9% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeee
Q 015301 60 QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDF 134 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 134 (409)
....|+-.|++.|+.+.. ..... ..+|..++-.. .....+.|-.+..+..||.+-........ .. ..+
T Consensus 502 ~~~~ly~mDLe~GKVV~e-W~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~--~~---k~Y 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEE-WKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS--QS---KQY 574 (794)
T ss_pred CCCceEEEecCCCcEEEE-eecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec--cc---ccc
Confidence 456788888888854443 22222 12244443211 12345667778889999987543111100 00 001
Q ss_pred ecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 135 SADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|.+|..+ .+|+++++.+ +..+.+++.
T Consensus 575 -----~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 575 -----SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -----ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEEEee-cceEEEEEE
Confidence 112247778777777 69999999999999954333344567778999999999 9999988766 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0099 Score=47.23 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=96.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
-+..+.++ +++...+..+.-+++.|+.+............. +--.++. -.|++..++..|.-+
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-------------gyaygv~--vsGn~aYVadlddgf 150 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-------------GYAYGVY--VSGNYAYVADLDDGF 150 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-------------ceEEEEE--ecCCEEEEeeccCcE
Confidence 46677776 456666777788999999887654443322210 0123333 368888888866667
Q ss_pred EEEECCCCe---eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 167 YVYDLQANK---CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 167 ~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
.+.|+.+.. ...++......-..++.+ |++-+.+..|+-+.+-|+... ....+.........+.++..+++-
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp--~sPvli~~~n~g~g~~sv~vsdnr 225 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNP--HSPVLIGSYNTGPGTYSVSVSDNR 225 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCC--CCCeEEEEEecCCceEEEEecCCe
Confidence 788886543 333444445555677776 778888889999999998521 111222222223367788777665
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccc
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+++.. +--+.+-|........
T Consensus 226 ~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 226 AYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred eEEEEc--ccceEEEecCCCCCce
Confidence 555443 2337777776655443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=63.01 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+..+.|+|.-.++|.+..+|.|.+..+. .+.+.+++.|...++ +++|. ++|++|++|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 48889999999999999999999999998 777888887888888 99999 899999999999999999964 444
Q ss_pred eeee-eeccccceeEEEEcC
Q 015301 223 ANGV-LMGHLEGITFIDSRR 241 (409)
Q Consensus 223 ~~~~-~~~~~~~v~~~~~~~ 241 (409)
.+.. .......|.++.|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 4433 222345667777753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.013 Score=47.38 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=87.6
Q ss_pred cceeeEEecCceeEeecc----ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCeeeee
Q 015301 3 VGREVNYSGRGRFSAADS----CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYN-VDKNWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~----~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~-~~~~~~~~~ 77 (409)
..+..++|+||..++.-. ...+...-.......+. -...+....|++++...+....+...+++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 467789999998655422 22233322223223322 334888999999988777766666667764 333322222
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEe---cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYAS---ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
..........|.++.+||||..+|... .++.|.+--+................ .. ......+..++|.+++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~---~~---~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR---VA---PPLLSDVTDVAWSDDS 177 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE---ec---ccccCcceeeeecCCC
Confidence 222222222799999999999988765 35777776654332220001000000 00 0112368999999999
Q ss_pred CeEEEEEec
Q 015301 155 QELVAAGSD 163 (409)
Q Consensus 155 ~~l~~~~~d 163 (409)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 877766553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.02 Score=47.13 Aligned_cols=278 Identities=10% Similarity=0.097 Sum_probs=123.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeeeeeeccc--ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV-DKNWKIQKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
..++..|.|..+..-+++|. .+. |+.. +.++.-........ ......++.|..+ ..+++ +..+.| +...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCC
Confidence 45789999996666666664 453 3444 33332222211111 1224677888643 34444 445543 333443
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~ 195 (409)
++.-......... ......+....++..++ ++..|.|+.=. ..| .-......-.+.+..+..+ +
T Consensus 90 G~tW~~v~l~~~l------------pgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~ 154 (302)
T PF14870_consen 90 GKTWERVPLSSKL------------PGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S 154 (302)
T ss_dssp TSS-EE----TT-------------SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred CCCcEEeecCCCC------------CCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence 4322111111000 00122333333443333 34445543322 222 2223334445778888888 8
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++.+++++..-....-||. ....-...-+.....|..+.|.|++.+.+.+ ..|.|+.=+...
T Consensus 155 dG~~vavs~~G~~~~s~~~----G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~------------- 216 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDP----GQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD------------- 216 (302)
T ss_dssp TS-EEEEETTSSEEEEE-T----T-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-------------
T ss_pred CCcEEEEECcccEEEEecC----CCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-------------
Confidence 9998888876666678882 1212222233346789999999998765544 788887766211
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeee-EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec--
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI-RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD-- 352 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-- 352 (409)
....+..+....... --+..+++.+++...++|+. |.+ +.....|+.-...+
T Consensus 217 -----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 217 -----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred -----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence 011111111101001 12456678888777776654 433 34555666554443
Q ss_pred -cCCcceeeeEEecCcCeEEeecCCCeEEEE
Q 015301 353 -FHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 353 -~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 382 (409)
.-...++.+.|.++.+-++. +.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 23456788888766555554 578988766
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.025 Score=47.92 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEE----eccCCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK----LDFHNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
.|.++++.-..+.|....+..+..+.. +......+.++++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 466777777678888888875533221 233455899999999999888888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.037 Score=48.89 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=123.2
Q ss_pred eEEEEEeCCCCcEEEEE-ecCC----EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 87 TITDTSLSPDQRFLVYA-SICA----IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~-~~dg----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+....++|+++++|.+ +..| .++++|+.+++..... +... ....+.|.++++.|+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~---------------~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENP---------------KFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEE---------------ESEEEEECTTSSEEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cccc---------------ccceEEEeCCCCEEEEEE
Confidence 45578899999999876 3333 5999999998542211 0100 123399999988877665
Q ss_pred ecC-----------eEEEEECCCCeee--eEEcCCCCC--eEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCc
Q 015301 162 SDN-----------FIYVYDLQANKCS--LRIPAHKSD--VNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGR 222 (409)
Q Consensus 162 ~d~-----------~i~v~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~ 222 (409)
.+. .|+.|.+.+.... ..+...... ...+..+ +++++|+..... ..+.+.|+........
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 432 4788888766432 334333332 5677888 788887754322 3467777541100122
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
....+......+....-+..+.+++.... .+.|...++....... .
T Consensus 268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~-------------------------------~ 316 (414)
T PF02897_consen 268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE-------------------------------W 316 (414)
T ss_dssp SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG-------------------------------E
T ss_pred CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccc-------------------------------c
Confidence 33333333333333222223333333322 3456666665532100 0
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCC--eEEEEEccCCceEEEecc-CCcceeeeEEecCcC-eEEe-e
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDN--SVYIYDLVSGAQVAKLDF-HNAPVRDCCWHPIYP-MLIS-S 373 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg--~v~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~s-~ 373 (409)
...+..+.....+.. ++..+. +++.-..++ .|+++++..+.....+.. -.+.|..+...++++ +.++ .
T Consensus 317 ~~~l~~~~~~~~l~~------~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 317 WTVLIPEDEDVSLED------VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp EEEEE--SSSEEEEE------EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEE
T ss_pred eeEEcCCCCceeEEE------EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEe
Confidence 001111111111111 111233 444444443 688999883444444432 334566666666666 3333 3
Q ss_pred c--CCCeEEEEecCCCccc
Q 015301 374 S--WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 374 ~--~dg~i~iw~~~~~~~~ 390 (409)
| .-++++.||+.+++..
T Consensus 391 s~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 391 SFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETTEEEEEEEEETTTTCEE
T ss_pred CCCCCCEEEEEECCCCCEE
Confidence 3 2367888888877654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0055 Score=55.83 Aligned_cols=189 Identities=9% Similarity=0.056 Sum_probs=97.7
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcCCCcc
Q 015301 51 DGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVGSSAR 119 (409)
Q Consensus 51 ~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~~~~~ 119 (409)
++.+.+.||.+ ..+..||..++. ................+. -+++..+.|+.++ .+..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56777777753 347778877662 222111111111122222 2577778887654 478889887654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----------------------CeEEEEECCCCee
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----------------------NFIYVYDLQANKC 176 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------~~i~v~d~~~~~~ 176 (409)
.....+..... ....+.. +++..+.|+.+ ..+..||..+.+.
T Consensus 380 ~~~~~mp~~r~-------------~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 380 KMLPDMPIALS-------------SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred EECCCCCcccc-------------cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 43333222111 1111222 67777777654 2477888877654
Q ss_pred eeEEcCCCCCe-EEEEEeCCCCcEEEEeeCCC------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 177 SLRIPAHKSDV-NTVCFADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 177 ~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
...-....... .+++.. ++.+.+.|+.++ .+..||.... .....+..+.........+.+ ++++.++|
T Consensus 445 ~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~G 519 (557)
T PHA02713 445 ETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLH 519 (557)
T ss_pred eecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEe
Confidence 32221111111 223333 567777777542 4678886510 123333333333232333333 67888899
Q ss_pred eCCC--cEEEeeCCC
Q 015301 250 GKDQ--TTKLWDIRK 262 (409)
Q Consensus 250 ~~dg--~i~iwd~~~ 262 (409)
+.++ .+..||..+
T Consensus 520 g~~~~~~~e~yd~~~ 534 (557)
T PHA02713 520 CYESYMLQDTFNVYT 534 (557)
T ss_pred eecceeehhhcCccc
Confidence 8888 677777766
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=46.64 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=105.0
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE----------
Q 015301 47 QFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI---------- 111 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~---------- 111 (409)
.|||||.+|...-.| |.|-|||...+ ....-+...|.-....+.|.+||+.++.+. |-|..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc
Confidence 599999999766443 78999999854 344445555555778899999999998874 33333
Q ss_pred ----------EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCee
Q 015301 112 ----------VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKC 176 (409)
Q Consensus 112 ----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~ 176 (409)
.|..+++......+.. ..+...|..++..+||..++.+-..| --.+=....++.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~-----------~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPA-----------SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCch-----------hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 2322222222221110 02233588888888887554433222 111112223333
Q ss_pred eeEEc-------CCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 177 SLRIP-------AHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 177 ~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+.-+. .....|-+++.+ .+..+++..+ ..+...+||.. ++..+....- .....+. +...-+++
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~l--~daaGva--~~~~gf~v 335 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAA----TGAVVSEAAL--PDAAGVA--AAKGGFAV 335 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcC----CCcEEecccc--cccccce--eccCceEE
Confidence 33322 123567788887 4444554444 44557789954 5554433211 1122232 23344777
Q ss_pred EeCCCcEEEeeC
Q 015301 249 NGKDQTTKLWDI 260 (409)
Q Consensus 249 ~~~dg~i~iwd~ 260 (409)
.+.+|.+.++.-
T Consensus 336 ssg~G~~~~~s~ 347 (366)
T COG3490 336 SSGQGRIIFYSR 347 (366)
T ss_pred ecCCceEEeccc
Confidence 778888888843
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0089 Score=45.79 Aligned_cols=154 Identities=13% Similarity=0.220 Sum_probs=93.5
Q ss_pred CCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEE-EecCCEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ---------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASICAIV 109 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i 109 (409)
..+.+.-..+|+|++++-.=. .|.++.|-.... +......-. --+.++|+.+.+.+.. -+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~---IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVG---ISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeehhcc---CCccccccccCcEEEEEccCceEE
Confidence 344555567899998542211 255666655432 111111111 3466889887766554 4566678
Q ss_pred EEEE--cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVD--VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.-|| ..++.......+........+. ....-.+++..+|++.++.-..++|...|..+|+.+.++......|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFE------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcC------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 7787 5565543333222222111111 1112335556688888888888999999999999999998889999
Q ss_pred EEEEEeCCCCcEEEEee
Q 015301 188 NTVCFADETGHLIFSGS 204 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~ 204 (409)
++++|--++-..+++..
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 99999855555555543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.021 Score=52.22 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=48.6
Q ss_pred CCcEEEEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----
Q 015301 96 DQRFLVYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----- 164 (409)
Q Consensus 96 ~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----- 164 (409)
++...++|+.+ ..+..||..+........+..... ....+. -+|+..+.|+.++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-------------~~~~~~--~~g~IYviGG~~~~~~~~ 367 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-------------RFSLAV--IDDTIYAIGGQNGTNVER 367 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-------------ceeEEE--ECCEEEEECCcCCCCCCc
Confidence 56677777753 347778877765433322221110 111222 2677777887653
Q ss_pred eEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 165 FIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 165 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
.+..||..+.+... .++...... +++. -++.+.+.|+.+
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSY-GMCV--LDQYIYIIGGRT 408 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccc-cEEE--ECCEEEEEeCCC
Confidence 48889988765433 122111111 2222 257777777765
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0027 Score=58.78 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCCcEEEEe-eCCCeEEEecccccccCCceeeeeeccccc-eeEEEEcC-----CCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 195 ETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEG-ITFIDSRR-----DGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 195 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+.++|+.- .....|+-.|+ ..++.+..+..|... |..++-.. +...-+.|-.+..+..||.|-.....
T Consensus 491 ~d~~mil~~~~~~~~ly~mDL----e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDL----ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEec----CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344454443 34567777885 488888888877654 55543221 12345667778889999998522100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
. ......+.... . ..+.+-+ ...+||+|+.+|.|++||--..+.
T Consensus 567 v----------------------------~~~~k~Y~~~~---~----Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~A 610 (794)
T PF08553_consen 567 V----------------------------DSQSKQYSSKN---N----FSCFATT-EDGYIAVGSNKGDIRLYDRLGKRA 610 (794)
T ss_pred e----------------------------eccccccccCC---C----ceEEEec-CCceEEEEeCCCcEEeecccchhh
Confidence 0 00001111111 0 1111222 356899999999999999433233
Q ss_pred EEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
-..+.+-..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 344567788999999999999877665 5678888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.075 Score=48.19 Aligned_cols=159 Identities=9% Similarity=0.060 Sum_probs=85.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCcEEEEEe------cCCEEEEEEcCCCcccccc
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~~w~~~~~~~~~~~ 123 (409)
..++.++.|+.+.-.|.++++.+...... .+.. -..+.-+| ++ .++++. .+|.|..+|.++++..-..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc-cccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 45677778899999999998766543221 1110 00111122 34 444443 2688999999988765433
Q ss_pred ceeceeee------------e---eeecCCCCc-ceeeE-EEEEcCCCCeEEEEEec----------------CeEEEEE
Q 015301 124 NVTEIHKG------------L---DFSADGDED-EFGIF-SVKFSTDGQELVAAGSD----------------NFIYVYD 170 (409)
Q Consensus 124 ~~~~~~~~------------~---~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~d----------------~~i~v~d 170 (409)
........ . .+....-.+ ...+. .+++.|+..+++.+..+ ..|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 32211100 0 000000000 11122 33566666666655421 1677889
Q ss_pred CCCCeeeeEEcCCCCCe---------EEEEEeCCCCc---EEEEeeCCCeEEEeccc
Q 015301 171 LQANKCSLRIPAHKSDV---------NTVCFADETGH---LIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~---~l~~~~~dg~i~iwd~~ 215 (409)
+++|+....++.....+ .-+... .++. .++.+..+|.+.+.|.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCCceEEEEECC
Confidence 99999887775422222 222221 3554 78889999999999965
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.039 Score=50.39 Aligned_cols=191 Identities=15% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------CEEEEEEcCC
Q 015301 49 SNDGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIVNIVDVGS 116 (409)
Q Consensus 49 s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~~w~~~~ 116 (409)
+..+.+++.||.+ ..+..||..++. ......... ...-.+++.. ++...++|+.| ..+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE-WSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc-EeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 3446677788776 357888887762 222111211 1123334443 45778888888 3577888887
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
++......+...... .....+ +|...++|+.|| ++..||..+.+....-+... ......
T Consensus 359 ~~W~~~a~M~~~R~~-------------~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~g 422 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSD-------------FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHG 422 (571)
T ss_pred CceeccCCccCcccc-------------ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeE
Confidence 775444333322111 111112 788888898876 47778877665433222111 222222
Q ss_pred EeCCCCcEEEEeeCCC------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc-----EEEeeC
Q 015301 192 FADETGHLIFSGSDDS------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT-----TKLWDI 260 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~ 260 (409)
...-++.+.++|+.++ ++..||.. .........+........ ++. -++.+.+.|+.|+. +..||.
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPE--TNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCC--CCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcC
Confidence 2224688888888654 46778865 222333333322222222 222 25777888887762 566766
Q ss_pred CC
Q 015301 261 RK 262 (409)
Q Consensus 261 ~~ 262 (409)
.+
T Consensus 499 ~~ 500 (571)
T KOG4441|consen 499 ET 500 (571)
T ss_pred CC
Confidence 55
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.055 Score=46.19 Aligned_cols=203 Identities=12% Similarity=0.024 Sum_probs=91.6
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCe---eeeeeeecc-----cccceEEEEEeCCCCcEEEEEe------cCCEEEEEEcC
Q 015301 51 DGSFFVAAS-QESNIKVYNVDKNW---KIQKDIETK-----ALRWTITDTSLSPDQRFLVYAS------ICAIVNIVDVG 115 (409)
Q Consensus 51 ~~~~l~t~~-~d~~i~vw~~~~~~---~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~------~dg~i~~w~~~ 115 (409)
+.++|+..+ ..+.|+|.|+.+.- .+.+..+.. .--.....+..-|+|+.++++- ..|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 66889999998541 222322220 0112344455568898888762 23457777776
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--------------------cCeEEEEECCCCe
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--------------------DNFIYVYDLQANK 175 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~v~d~~~~~ 175 (409)
+.+.......... ...--+.+.|.|..+.+++... ...+.+||+.+.+
T Consensus 166 tf~v~g~We~~~~------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 166 TFEVKGRWEKDRG------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp T--EEEE--SB-T------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred cccccceeccCCC------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 6544322221111 1112456777887777776532 3579999999999
Q ss_pred eeeEEcCCC--CCeEEEEEeC-CCCcE-EEEeeCCCeEEEecccccccCC--ceeeee-----------------ecccc
Q 015301 176 CSLRIPAHK--SDVNTVCFAD-ETGHL-IFSGSDDSLCKVWDRRCFISKG--RANGVL-----------------MGHLE 232 (409)
Q Consensus 176 ~~~~~~~~~--~~v~~~~~~~-~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-----------------~~~~~ 232 (409)
.++++.... ..+..+.|.. |+... ++.+.-..+|..|--.. .... +.+..+ ..-..
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 999886433 2355677752 23333 33333444555443210 0001 111111 11134
Q ss_pred ceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccc
Q 015301 233 GITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSN 266 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~ 266 (409)
-|+.|..|.|.++|..++. .|.|+.||+......
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 5788999999999887765 899999999885443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00076 Score=37.58 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
...|.+++|+|..+++|.+..+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00031 Score=53.18 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+..+++|+.+|.|.+|+........-....... .....+.-..++.+..+++.+|.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-------------~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-------------SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccc-------------cceeccccccccceeEEeccCCceeeeccccCce
Confidence 567889999999999988732221111111000 0122222233556788899999999999988887
Q ss_pred eeEEcCCC-CCeEEEEEeCCCCcEEEEe--eCCCeEEEeccc
Q 015301 177 SLRIPAHK-SDVNTVCFADETGHLIFSG--SDDSLCKVWDRR 215 (409)
Q Consensus 177 ~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 215 (409)
+...-.|+ .++.....+ ..+.+++.. +.|..++.|++.
T Consensus 137 ~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchh
Confidence 77776677 555555555 556666666 677777777754
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.086 Score=45.55 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=27.8
Q ss_pred ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 231 LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 231 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...+.+++.+|++++.++...-|+|.++|+.+.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 345788999999998888877899999999883
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0056 Score=52.62 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=94.1
Q ss_pred CCCcEEE-EeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-------eEEEEeCCCcEEEeeCCCCccc
Q 015301 195 ETGHLIF-SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-------YFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 195 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
.+.++|+ ++.....++-.|+ +.++.+..+.-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.|-...
T Consensus 343 ~dsnlil~~~~~~~~l~klDI----E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~- 416 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDI----ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK- 416 (644)
T ss_pred cccceEeeCCCCcCcceeeec----ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-
Confidence 3444444 4455556777774 58888888887766 77777777643 124466788899999874211
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+....+|.-.... -|+..-.....++++|+.+|.|++||--..+
T Consensus 417 -------------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~ 462 (644)
T KOG2395|consen 417 -------------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRR 462 (644)
T ss_pred -------------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhh
Confidence 012222222211111 0111111235689999999999999973333
Q ss_pred eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.-..+.+...+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 463 AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 463 AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 3455678889999999999999777654 5677777764
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.12 Score=44.77 Aligned_cols=158 Identities=8% Similarity=0.073 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCC-----CCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSP-----DQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
+...+++||..|.++||+..... .....+-......+|..+..-. +...||+ =.-..+.+|.+.........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc-
Confidence 34689999999999999986542 1111111222334787776532 2344554 44677888887322111000
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC----C-CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST----D-GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
-....-...+...... ....+++-| . ..++.+-+.||.+.+++-+.......++. .--...++|. +..+.
T Consensus 114 g~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~-~~tDs 188 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYC-PRTDS 188 (418)
T ss_pred CcEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEe-ecCCE
Confidence 0000000001111111 233333333 2 35778888999999999776554444443 3334567888 77788
Q ss_pred EEEeeCCCeEEEeccc
Q 015301 200 IFSGSDDSLCKVWDRR 215 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~ 215 (409)
|++++.+..+.-|...
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 8898888899988864
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.05 Score=49.75 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=105.7
Q ss_pred eEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEE
Q 015301 43 VYTSQFSNDGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNI 111 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~ 111 (409)
-.+++.. +|.+.++||.| .++..||...+. .................. -+|...|+|+.|| ++..
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEE
Confidence 3344444 45788889888 357778877663 222222222111111122 2578888898886 4778
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEE--cCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRI--PAH 183 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~--~~~ 183 (409)
||..+.+............ ....+.+ +|...++|+.+ .++..||..+++....- ..-
T Consensus 401 YDp~~~~W~~va~m~~~r~-------------~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRS-------------GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred ecCCCCcccccCCCCccee-------------eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 8888777655444333111 1222222 77777888754 35778888877654322 211
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCe-----EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSL-----CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ----- 253 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----- 253 (409)
... ..++.. ++.+.+.|+.|+. |..||.+ ......+..+......+....+ ++...++|+.||
T Consensus 466 R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 466 RSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred ccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCC--CCceeEcccCccccccccEEEE--CCEEEEEecccCccccc
Confidence 111 224443 6788888888773 6778865 2233333223222222222222 467778888776
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
+|..||..+
T Consensus 539 ~ve~ydp~~ 547 (571)
T KOG4441|consen 539 TVECYDPET 547 (571)
T ss_pred eeEEcCCCC
Confidence 466666554
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.064 Score=41.35 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=38.9
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+|++.++.-..++|...|..+|+.+.+++-....|++++|--
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33588888888899999999999999999998899999999953
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.086 Score=42.72 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=88.3
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE-cCCC
Q 015301 42 RVYTSQFSNDGSFFVAAS---QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD-VGSS 117 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~-~~~~ 117 (409)
.+...+++++|+.+|... ....++++.... ...... .+ ..+..-.|++++...++...+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887665 234455555443 332222 11 1577889999988888777677667764 2222
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECC---CC------eeeeEEcCCCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQ---AN------KCSLRIPAHKS 185 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~---~~------~~~~~~~~~~~ 185 (409)
.......... .....|..++++|||..++.... ++.|.+--+. .+ ...........
T Consensus 99 ~~~~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 99 TGEPVEVDWP------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred cceeEEeccc------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 2211110000 00115999999999999887663 4677776543 23 11111223356
Q ss_pred CeEEEEEeCCCCcEEEEeeCCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDS 207 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg 207 (409)
.++.+.|. .+..+++.+...+
T Consensus 167 ~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 167 DVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred cceeeeec-CCCEEEEEeCCCC
Confidence 88999999 6676666655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.1 Score=46.06 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=70.5
Q ss_pred eeEEEEEcCC----CCeEEEEEecCeEEEEECC-----CCeeeeEEcCC---CC--CeEEEEEeCCCCcEEEEeeCCCeE
Q 015301 144 GIFSVKFSTD----GQELVAAGSDNFIYVYDLQ-----ANKCSLRIPAH---KS--DVNTVCFADETGHLIFSGSDDSLC 209 (409)
Q Consensus 144 ~v~~~~~~~~----~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~~~dg~i 209 (409)
-|..+.|.|- ...+++......|.||.+. +.+.+..-..+ .- -...+.|+ |....|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 3899999984 3345555567899999885 22322221111 11 12457898 666777766655544
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
.+++++ ..+......+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 137 V~~sV~--~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVH--CDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred Eeeeee--eCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 566665 2233333333 45678999999999998876543 33567887543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.095 Score=42.03 Aligned_cols=163 Identities=7% Similarity=0.115 Sum_probs=100.2
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
....+.++.|+|+.+.|++......-.++=..+++..........+ ....+.+..++++.++--.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------------DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------------DPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------------ChhHeEEecCCEEEEEehhc
Confidence 3345999999999999998887777667666666655444433322 24557777778777766668
Q ss_pred CeEEEEECCCCeeeeE-------E---cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---
Q 015301 164 NFIYVYDLQANKCSLR-------I---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--- 230 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~-------~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--- 230 (409)
..+.++.+.....+.. + ...+.....++|. +....|+.+-+..-+.||.+... ...-.......+
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~-~~~l~~~~~~~~~~~ 227 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQS-PSSLSVHASLDPTAD 227 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecC-CcccccccccCcccc
Confidence 8888887765422211 1 1125667899999 66666666667777777765411 101111111111
Q ss_pred ----ccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCC
Q 015301 231 ----LEGITFIDSRRD-GRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 231 ----~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 262 (409)
-..+.++.|++. +.+|+-+.+++.+.-.|...
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 234677778764 45566666677777777654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.053 Score=49.69 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCcc
Q 015301 51 DGSFFVAASQES------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSAR 119 (409)
Q Consensus 51 ~~~~l~t~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~ 119 (409)
++..++.||.++ .+..||..++.- ...............+.+ +++..+.|+.+ ..+..||..+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456667776542 467788776522 222111111111222222 56777778755 3477788776654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEE--cCCCCCeEEEE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRI--PAHKSDVNTVC 191 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~--~~~~~~v~~~~ 191 (409)
........... .. +++ .-+++..+.|+.+ ..+..||..+++....- +..... .+++
T Consensus 371 ~~~~~lp~~r~-------------~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~ 434 (534)
T PHA03098 371 REEPPLIFPRY-------------NP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI 434 (534)
T ss_pred eeCCCcCcCCc-------------cc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE
Confidence 33222211100 01 111 1256667777632 46888998876543321 111111 1233
Q ss_pred EeCCCCcEEEEeeCCC--------eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEe
Q 015301 192 FADETGHLIFSGSDDS--------LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLW 258 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 258 (409)
. .++.+++.|+.++ .+.+||... .....+..+.........+.+ +++.++.|+.+ ..+.+|
T Consensus 435 ~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 435 Y--HDGKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred E--ECCEEEEECCccCCCCCcccceEEEecCCC--CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEE
Confidence 3 3566777776432 378888651 122222211111111122222 56677777654 367778
Q ss_pred eCCC
Q 015301 259 DIRK 262 (409)
Q Consensus 259 d~~~ 262 (409)
|..+
T Consensus 509 d~~~ 512 (534)
T PHA03098 509 DDKT 512 (534)
T ss_pred eCCC
Confidence 7765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.042 Score=47.59 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCCeEE-EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCC-------cEEEEeeCCCeEEEecccccccCCcee
Q 015301 153 DGQELV-AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETG-------HLIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 153 ~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
+.++|+ .+.....++-.|++.|+.+.....+.. |+-+.+. |+. ..-+.|-.|..|.-||+| ......+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t-~d~K~~Ql~~e~TlvGLs~n~vfriDpR--v~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDIT-PDFKFAQLTSEQTLVGLSDNSVFRIDPR--VQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeecc-CCcchhcccccccEEeecCCceEEeccc--ccCccee
Confidence 444443 444456788999999999998887665 6666676 332 123346678889999998 2233233
Q ss_pred eeeeccc----cceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 225 GVLMGHL----EGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 225 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
....+|. ....|.+-..+| ++++|+.+|.|++||-
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence 3333332 234555555555 7999999999999996
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0037 Score=34.84 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=28.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
...|..++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3479999999999999999999999999983
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0027 Score=59.16 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
.+..++.|++.|.+-..|+..+ +..........++|++++|+.+|+.++.|-.+|.|.+||+..++..........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 4567888888899988887664 222233334456899999999999999999999999999998765433332211
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
.+. .|..+.+..++..++++...|. +|.+
T Consensus 174 ---------p~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 ---------PVT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ---------ccc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 112 3444555556667777776675 4443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.15 Score=42.05 Aligned_cols=196 Identities=11% Similarity=0.118 Sum_probs=104.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee-----------ecccccceEEEEE--eCCC-CcEEEEEe
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI-----------ETKALRWTITDTS--LSPD-QRFLVYAS 104 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-----------~~~~~~~~v~~~~--~s~~-~~~l~~~~ 104 (409)
+...|..+...|+-+.|++-+ |+.+.+++++.-....... ........+...+ -... ...|+++
T Consensus 34 ~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va- 111 (275)
T PF00780_consen 34 KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA- 111 (275)
T ss_pred ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-
Confidence 344499999999888777765 5999999987643322110 0111112344444 1123 3445544
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH- 183 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 183 (409)
....|.+|..............+ +.. ...+.+++|. ++.++.|.. ....+.|+.++.....+...
T Consensus 112 ~kk~i~i~~~~~~~~~f~~~~ke----~~l-------p~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~ 177 (275)
T PF00780_consen 112 VKKKILIYEWNDPRNSFSKLLKE----ISL-------PDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSD 177 (275)
T ss_pred ECCEEEEEEEECCcccccceeEE----EEc-------CCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccC
Confidence 45689999887642211001111 111 1258889997 556777764 45888999877654433211
Q ss_pred -----------CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee--eeeccccceeEEEEcCCCCeEEEEe
Q 015301 184 -----------KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 184 -----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
..++..+.. +++.+|++- |..-.+.|. .+.... .+.- .....++++. ..+|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~~g~fv~~-----~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~ 245 (275)
T PF00780_consen 178 SSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DNIGVFVNK-----NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFS 245 (275)
T ss_pred CcchhhhcccCCCceEEEEe--CCceEEEEe--cceEEEEcC-----CCCcCcccEEEc-CCchhEEEEE--CCEEEEEC
Confidence 123334444 345566543 333444443 232222 2221 2344556653 34677665
Q ss_pred CCCcEEEeeCCCC
Q 015301 251 KDQTTKLWDIRKM 263 (409)
Q Consensus 251 ~dg~i~iwd~~~~ 263 (409)
. +.|.||++.+.
T Consensus 246 ~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 246 S-NSIEVRSLETG 257 (275)
T ss_pred C-CEEEEEECcCC
Confidence 5 45999999983
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.18 Score=43.71 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=93.0
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC----CCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR----DGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
.+.+.|++|+..|.++||+..........+.....-..+|..+..-. .....++.-....+.+|.+.........
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc-
Confidence 35578999999999999997422111112222233457888777532 2222333355667888887432111000
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEeCCCeEEEEEccCCceEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
.....+.....|.........+..+--... ..++.+-+.||.+.+|+-+.-....
T Consensus 114 ------------------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 114 ------------------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred ------------------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 001123333333332222222222211112 4688889999999999976554444
Q ss_pred EeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+.. ---..-+.+.+....+++++.+..|.-|....
T Consensus 170 ~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 4433 11223467778888899999888999998744
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.35 Score=45.64 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+|++||. -+..|++|++.+.+.+..-..|..++..+...-.+..++.|..=+.+.+-.....
T Consensus 839 ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 839 NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 4666654 4567999999988777777778889999999888999999987777766555443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.17 Score=41.88 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=85.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL 122 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 122 (409)
.+++.|..+ ..+++| ..+ +.+...+.+.............+....+....++..++ ++..|.| |...++...-.
T Consensus 64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEE
T ss_pred EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCee
Confidence 667788643 344444 444 55555565644444321111122333344434443333 3444543 43333322111
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.... +....+..+.-+++|++++++.......-||-....-...-......|..|.|. +++.+.+.
T Consensus 138 ~~~~-------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~ 203 (302)
T PF14870_consen 138 AVVS-------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWML 203 (302)
T ss_dssp EEE--------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEE
T ss_pred Eccc-------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEEEE
Confidence 1111 112358888889999988888665555677754332232233356889999999 77766554
Q ss_pred eeCCCeEEEecccccccC-CceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 203 GSDDSLCKVWDRRCFISK-GRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
+ ..|.|+.=+....... .+.........-.+..++|.+++...++++..
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 4 7888887762100111 11111111223347889999887776665543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.037 Score=52.17 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.++|++++|+.+|+.++.|-.+|.|.+||+..+..++...........|..+.+..++..++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 589999999999999999999999999999998666655544443334555556666667888877776 5654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.54 Score=44.43 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------CEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIVN 110 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 110 (409)
.+..+.+||||++|+.+.+ ...|++-|+.++..+..... . .-..++|++|++.|+....+ ..|.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--N---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--C---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4677889999999886533 24588999987743322221 1 11458999999877776542 3677
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEEC--CCCeeeeEEcCCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDL--QANKCSLRIPAHKS 185 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~--~~~~~~~~~~~~~~ 185 (409)
.+++.++............ .... .....+.++++++..+. ++.+.+++. .+++....+.....
T Consensus 203 ~h~lgt~~~~d~lv~~e~~-----------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKD-----------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred EEECCCChhHCeEEEeeCC-----------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC
Confidence 7888777322111111100 0011 13333447777665544 457888884 33433222322222
Q ss_pred CeEEEEEeCCCCcEEEEeeCC-CeEEEecccccccCCceeeeeecc-c-cceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 186 DVNTVCFADETGHLIFSGSDD-SLCKVWDRRCFISKGRANGVLMGH-L-EGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
....+. + ..+.+++....+ ...++..+. .........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 271 ~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 271 HEYSLD-H-YQHRFYLRSNRHGKNFGLYRTR--VRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CEEEEE-e-CCCEEEEEEcCCCCCceEEEec--CCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 222222 2 333333333222 233333322 1111122333344 2 367777776 3345555666776555544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.38 Score=43.37 Aligned_cols=184 Identities=9% Similarity=0.001 Sum_probs=87.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC--CEEEEEEcCCCcccccc
Q 015301 51 DGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--AIVNIVDVGSSARESLA 123 (409)
Q Consensus 51 ~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~~w~~~~~~~~~~~ 123 (409)
++.++++||.++ ++..||..++.- ...............+. -++...++|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW-IPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEE-EECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 466788776522 22111111111112222 357777777753 35677776655433222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---CeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---NFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGH 198 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 198 (409)
.+..... ....+. -+|+..+.|+.+ ..+..||..+.+....- ...... .+++. -++.
T Consensus 348 ~l~~~r~-------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~~~ 409 (480)
T PHA02790 348 SLLKPRC-------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FGRR 409 (480)
T ss_pred CCCCCCc-------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--ECCE
Confidence 2211100 111222 267777777754 34678888776544321 111111 12222 2466
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
+.+.| |.+.+||.+ .........+.........+. -+++..+.|+.+ ..+..||..+
T Consensus 410 IYv~G---G~~e~ydp~--~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 410 LFLVG---RNAEFYCES--SNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEEC---CceEEecCC--CCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 66666 357788865 222222222221112222222 257777777754 3566777665
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.16 Score=46.36 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=72.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeC--CCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS--PDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
...-+.-|.-++..++-+....+.|||...+..... ... ...+.|.++.|. |+++.+++.+....|.++.-.....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455555555555556799999988753222 122 334589999985 6889999889999999986532211
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
............+..... ...+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSH---TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecC---CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111111111122222211 12368899999999765544 367888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.39 Score=40.85 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=113.8
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCC-c-------eeecCCCCeEEEEECCC----CCEEEEEeCC--------C
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGP-W-------KVDGMNSRVYTSQFSND----GSFFVAASQE--------S 62 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~-------~l~~h~~~v~~~~~s~~----~~~l~t~~~d--------~ 62 (409)
+++.++|.|||+.+.+.....++.+...... . ...........++++|+ +.+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999998777665544444422221 1 12234567899999994 4433333321 2
Q ss_pred cEEEEEcCCC-------eeeeeeeec---ccccceEEEEEeCCCCcEEEEEecCC-------------EEEEEEcCCCcc
Q 015301 63 NIKVYNVDKN-------WKIQKDIET---KALRWTITDTSLSPDQRFLVYASICA-------------IVNIVDVGSSAR 119 (409)
Q Consensus 63 ~i~vw~~~~~-------~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg-------------~i~~w~~~~~~~ 119 (409)
.|.-|....+ +.+...... ..| .-..|.|.|||.+.++.+..+ .|.-.+....-.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 3444554433 111111111 233 456799999997766655332 222222221100
Q ss_pred ccccce--eceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEe--cC--eEEEEECCCC------------------
Q 015301 120 ESLANV--TEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGS--DN--FIYVYDLQAN------------------ 174 (409)
Q Consensus 120 ~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d~--~i~v~d~~~~------------------ 174 (409)
...... ......+ +. .++. ....++|+|. |.++ ++.. +. .|.+. ..+
T Consensus 161 ~dnP~~~~~~~~~~i-~A---~GlR-N~~~~~~d~~tg~l~-~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 161 ADNPFVGDDGADSEI-YA---YGLR-NPFGLAFDPNTGRLW-AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp TTSTTTTSTTSTTTE-EE---E--S-EEEEEEEETTTTEEE-EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred CCCccccCCCceEEE-EE---eCCC-ccccEEEECCCCcEE-EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence 000000 0000000 00 0111 3568999998 6544 4332 22 23222 111
Q ss_pred -----------eeeeEEcCCCCCeEEEEEeCC------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 175 -----------KCSLRIPAHKSDVNTVCFADE------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 175 -----------~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
.+...+..| ..+..+.|... .+.+|++.-..+.|....+............+......+..+
T Consensus 233 ~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred cccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 122233333 56677777621 345666665566777776541111111112222344478999
Q ss_pred EEcCCCCeEEEEeCCCcEE
Q 015301 238 DSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~ 256 (409)
++.|||.++++...+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.29 Score=45.02 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=52.3
Q ss_pred CCcEEEEEecCC------EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----C
Q 015301 96 DQRFLVYASICA------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----N 164 (409)
Q Consensus 96 ~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~ 164 (409)
++..++.|+.++ .+..||..+.+........... .....+.+ +++.++.|+.+ .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R-------------~~~~~~~~--~~~lyv~GG~~~~~~~~ 358 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR-------------KNPGVTVF--NNRIYVIGGIYNSISLN 358 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc-------------ccceEEEE--CCEEEEEeCCCCCEecc
Confidence 456667776432 4677887776553332221110 01122222 67777777754 3
Q ss_pred eEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCC------CeEEEeccc
Q 015301 165 FIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRR 215 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 215 (409)
.+..||..+.+....-.. +...-.+++. -++.+++.|+.+ ..+..||+.
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCC
Confidence 577888877654321111 1111122232 356777777632 357788864
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.086 Score=47.88 Aligned_cols=180 Identities=9% Similarity=0.066 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
-..|+|+++... .+....-.++ .+-.+.|+.+.. |++...+|++++|++............+..
T Consensus 63 ~~~I~If~~sG~-lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~----------- 126 (829)
T KOG2280|consen 63 RPYIRIFNISGQ-LLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQ----------- 126 (829)
T ss_pred ceeEEEEecccc-chHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccc-----------
Confidence 345888887543 4444333332 688899997654 566788999999999765433211101100
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc---CCCCCeEEEEEeCCCC--cEEEEee-CCCeEEEecc
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP---AHKSDVNTVCFADETG--HLIFSGS-DDSLCKVWDR 214 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~--~~l~~~~-~dg~i~iwd~ 214 (409)
...|..+.+..+| +++-..+|.+.+.+-.....+.+++ ....+-+|-...++.. ..++-.. ..+ ..++-.
T Consensus 127 -~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~ 202 (829)
T KOG2280|consen 127 -MSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV 202 (829)
T ss_pred -cCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence 1135556665566 4444445666554432222233332 2222223333332211 1111111 001 111111
Q ss_pred cccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 215 RCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
. ........+....+.+..+..||+.++|+--...|.+.+-+....
T Consensus 203 ~---~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 203 E---ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred e---cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 1 111122222222456788899999999999999999988877653
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.1 Score=44.54 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE----EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 219 (409)
+|.++.|++|.+.+++--.+.+|.+++....+.... .+..+..|....|. .+ .-++..+..| +.+|-.. .
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~---p 141 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL---P 141 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---h
Confidence 799999999999999999999999999854433322 23345568899998 43 5555555544 5566542 3
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
....++..+.|+-.|.-..|.++.+.++-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 455566667788888888898887754433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.34 Score=38.78 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred EEEEEeCCC-CcEEEEEecCCE-EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 88 ITDTSLSPD-QRFLVYASICAI-VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 88 v~~~~~s~~-~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
-..|+|+|. ..-++.+-.-|+ ..++|..+.+........... .| .-.-.|||||.+|...-.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---Hf----------yGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---HF----------YGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---ee----------ecccccCCCCcEEEeecCCCC
Confidence 345788885 455666766665 567888776654332221110 01 1224589999998876443
Q ss_pred ---CeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 164 ---NFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 164 ---~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
|.|-|||...+ +.+.++..|.-....+.+. +++..++.+.
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm-~DGrtlvvan 180 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM-ADGRTLVVAN 180 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcceeEEe-cCCcEEEEeC
Confidence 78999998754 3456678888888899999 8999888764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.51 Score=40.63 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=71.9
Q ss_pred CCCCCEEEEEe--CC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe------------------
Q 015301 49 SNDGSFFVAAS--QE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS------------------ 104 (409)
Q Consensus 49 s~~~~~l~t~~--~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------ 104 (409)
-|+|+.++++- .+ |-+.+.|-++.+....-........--..+.|.|..+.++++.
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 47888888752 22 4577788776533322212222233456777888888888764
Q ss_pred --cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEE-ecCeEEEEEC-CCCee--
Q 015301 105 --ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAG-SDNFIYVYDL-QANKC-- 176 (409)
Q Consensus 105 --~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~i~v~d~-~~~~~-- 176 (409)
....+.+||+.+.+..+...+..... .+..+.|.. +..+=++++ -.++|..|-- +.++.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~-------------~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a 284 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQ-------------MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA 284 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEE-------------EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCC-------------ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence 23579999999988766655543211 255666654 344433333 3455555543 33322
Q ss_pred --eeEEcC-----C------------CCCeEEEEEeCCCCcEEEEee-CCCeEEEecccc
Q 015301 177 --SLRIPA-----H------------KSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRC 216 (409)
Q Consensus 177 --~~~~~~-----~------------~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 216 (409)
+..+.. - ..-|+.|..+ .+.++|+..+ .+|.|+.||+..
T Consensus 285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SS
T ss_pred eEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCC
Confidence 112211 0 2457899999 7777777665 689999999863
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.067 Score=50.90 Aligned_cols=153 Identities=11% Similarity=-0.008 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCcEEEEE--ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEec
Q 015301 87 TITDTSLSPDQRFLVYA--SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSD 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 163 (409)
+|..+...+|+...++. +.+-.|..||+.+-......... .+...........-..++.|+|.-. ..++...|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc----ccccccchhccccccccccccCCccchhhhhccc
Confidence 56666777787665544 34447899999765433211110 0001111111222366788888532 34566678
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEE
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDS 239 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~ 239 (409)
+.|++..+........--.-....++++|+ +.|..++.|-..|++.-|... ......+.+ ....|.+++|
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCcceeEEEE
Confidence 888888765433222212246778999999 899999999999999988743 222222211 1467899999
Q ss_pred cCCCCeEEEE
Q 015301 240 RRDGRYFISN 249 (409)
Q Consensus 240 ~~~~~~l~~~ 249 (409)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8766665543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1 Score=42.74 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=76.9
Q ss_pred eeEEEEEcCC-CCeEEEEEe----------cCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTD-GQELVAAGS----------DNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
.+.++.|..| +.++++|+. .|.|.++.+..+..+..... -.+.+.++... +++++|. -...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEE
Confidence 3555567776 677777764 47788888876433333321 24556666543 5666655 456799
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+|++. ..+.++.-..+..++..+...-.+..+++|.--+++.+...+.
T Consensus 852 Lye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 852 LYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 99964 5556666777888999999988999999998888888776655
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=42.97 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=83.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 44 YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 44 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+.+-|...++.|++.. .|-+.=|-+.....-....-.....++|.++.||+|.+.||+--.+.+|.+++....+.....
T Consensus 26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 4455554444444332 233555554332111111112223458999999999999999999999999998555433222
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEEE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLIF 201 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~ 201 (409)
...... ....|....|+.+ .-++.....| +-+|..... ..++..+.|...|.-..|+ ++.+.++
T Consensus 105 ~~~ck~-----------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 105 TQECKT-----------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred HHHhcc-----------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 221111 1224888999876 4455555444 666655432 3344556788889999998 5555443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=49.33 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=76.0
Q ss_pred eeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeee-----EE------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEE
Q 015301 144 GIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSL-----RI------PAHKSDVNTVCFADETGHLIFSGSDDSLCK 210 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 210 (409)
++..+...+|+...++... +-.|..||+++-..-. -+ ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5666777777765554433 3478899987532211 11 112345678889976666677888899999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+..+.. ....... .......++++|+|.|+.++.|-..|++.-|...
T Consensus 182 V~~~~~---~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQ---LAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhh---hhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 988641 1112222 2345678999999999999999999999888654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.88 Score=41.82 Aligned_cols=192 Identities=9% Similarity=0.116 Sum_probs=92.5
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--e--eccccceeEEEE
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L--MGHLEGITFIDS 239 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~~~v~~~~~ 239 (409)
-.|+|++. +|..+..+.-....+..+.|+ +...|++...+|++.+|++- +..... . ......|..+.+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence 45888886 466666554444588899998 45567777899999999963 222211 1 112233444555
Q ss_pred cCCCCeEEEEeCCCcEEE-eeCCCCccccccccc---ccccccccccccccccce-ecc-----ccCccceeeeecccce
Q 015301 240 RRDGRYFISNGKDQTTKL-WDIRKMSSNTTDNSR---LRDYDWDYRWMEYPSYAR-RLK-----HPHDQSLATYKGHSVL 309 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 309 (409)
..+|-.+++ .+|.+.+ -+...+........+ .....|....-....... .+. +...........|..
T Consensus 136 f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 136 FHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL- 212 (829)
T ss_pred ecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence 445543333 3333333 233221111100000 000112111110000000 000 000000000001110
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec--cCCcceeeeEEecCc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD--FHNAPVRDCCWHPIY 367 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~ 367 (409)
......+..+..||+.++|+-=...|.|.+-+.+..+....+. .|. +-..++|..+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1112334455788999999999999999999888777766665 232 22356665443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.34 Score=44.27 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEecCe
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNF 165 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~ 165 (409)
+.-+.-+.-++.-++-+....+.|||...+........ .....|.++.|. |+++.+++.+....
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------------~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------------SEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------------cCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 44445555555555555566899999988764332222 112368999986 58888888888999
Q ss_pred EEEEECC---------CCeeeeEE--cCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecc
Q 015301 166 IYVYDLQ---------ANKCSLRI--PAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 166 i~v~d~~---------~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
|.++.-. +..++..+ ..|+ .+|.+..|. ++|.+++.+ ++.+.|+|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEEEEe--CCEEEEECC
Confidence 9988532 11223332 3344 679999999 777666554 356888883
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.9 Score=40.58 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCCeEEEEECCCCCEEE-EEe--CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC----CcEEEEEecCCEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFV-AAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD----QRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~~w 112 (409)
-.+|..++|. ||+.++ |.- .+|.+++=|. ....... .|..+.|.|- ...|++......|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3678899998 565544 432 2333332221 1222223 4899999985 3345555667889999
Q ss_pred EcCCCccc--cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC--CeeeeEEcCCCCCeE
Q 015301 113 DVGSSARE--SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA--NKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~v~ 188 (409)
.+...... .....+...-...|. --...+.|+|....|++-.....-.++++.. .....-+. ..+.|.
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~p-------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~Ih 159 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFP-------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIH 159 (671)
T ss_pred EeccCccccccceeeeeeeccCCcc-------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEE
Confidence 98632211 111111111000000 0124578999988887766544434555543 23333343 567899
Q ss_pred EEEEeCCCCcEEEEe-eCCCeEEEecc
Q 015301 189 TVCFADETGHLIFSG-SDDSLCKVWDR 214 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~-~~dg~i~iwd~ 214 (409)
|.+|. ++|+.|+++ +..=.-++||-
T Consensus 160 CACWT-~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 160 CACWT-KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEec-CcCCEEEEEeCCeEEEEEecC
Confidence 99999 777776654 33345678983
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCeEEEEEeCCCC--cEEEEeeCCCeEEEeccc
Q 015301 185 SDVNTVCFADETG--HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 185 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~ 215 (409)
+.+.+++|+|..+ ++|+.+-..|.|.++|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4688999996666 799999899999999987
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.044 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 015301 41 SRVYTSQFSNDG---SFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 41 ~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~ 72 (409)
++|.++.|||+. ++|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999999854 58888888899999999854
|
It contains a characteristic DLL sequence motif. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.64 Score=40.26 Aligned_cols=157 Identities=13% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 41 SRVYTSQFSNDGSFFVAAS-----------QES-NIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~-----------~d~-~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
.....|+|.++|+++++-. ..+ .|.+++-.++ ....+.......-.....+++.+++ |.++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4467889999998776642 123 6766654322 1111111111111246889999888 44444443
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-------------------CeEEE
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------------------NFIYV 168 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~v 168 (409)
..++.+........ ......... +......+......++|.|||.+.++-+.. |.|.-
T Consensus 92 i~~~~d~~gdg~ad-~~~~~l~~~--~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 92 ILFLRDKDGDDKAD-GEREVLLSG--FGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred EEEEeCCCCCCCCC-CccEEEEEc--cCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 33333443221110 000000000 101001122347789999999866654421 34555
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
++..+++......++ .....++|+ ++++++++-.
T Consensus 169 ~~pdg~~~e~~a~G~-rnp~Gl~~d-~~G~l~~tdn 202 (367)
T TIGR02604 169 YNPDGGKLRVVAHGF-QNPYGHSVD-SWGDVFFCDN 202 (367)
T ss_pred EecCCCeEEEEecCc-CCCccceEC-CCCCEEEEcc
Confidence 565554433222332 334678888 6777766533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.79 Score=38.90 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCc------EEEEEcCCC------eeeeeeeecccccc--------eEEEEEeCCCCcEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESN------IKVYNVDKN------WKIQKDIETKALRW--------TITDTSLSPDQRFL 100 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~------i~vw~~~~~------~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l 100 (409)
+.+..+.+.|++..+++.+++|. +...++... .............+ ...+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 66889999976667777777777 666665431 01111111111111 34478887788887
Q ss_pred EEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 101 VYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 101 ~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
++.-.+ ..|..++.. ++...........................-+++++|+|+.|+++..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 776666 678777766 4432222111111000000011233456899999999997776644
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.58 Score=37.35 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=129.1
Q ss_pred cceeeEEecCce-eEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGR-FSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
+.+.|+-+|||. +.........-.+-|..... .-.+....-..|..-|||..-++=+.. -|.-.|-++.+.....+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 345677778883 33333333344444443332 223445556677788888766664433 35545555543333333
Q ss_pred ecccccceEEEEEeCCCCcEEEEEec---------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASI---------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF 150 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (409)
.............|.+.|...+++.. .+.|++|+...+. ..+.++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------------------gpyGi~a 196 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------------------GPYGICA 196 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------------------CCcceEE
Confidence 33333456778899999999888752 2345555443221 3677888
Q ss_pred cCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC---CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee
Q 015301 151 STDGQELVAAGSDNFIYVYDLQANKCSLRIPAH---KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 151 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
.|+|..-++.-.+..|-..|..++... .+... ...-..+ |+.+.+..-++-...+.+..+|.. ...-....+
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRri-wsdpig~~wittwg~g~l~rfdPs---~~sW~eypL 271 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRI-WSDPIGRAWITTWGTGSLHRFDPS---VTSWIEYPL 271 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcc-eecCCCccccccccc-ccCccCcEEEeccCCceeeEeCcc---cccceeeeC
Confidence 999987777666777777787666322 22111 1122233 444677777777777888888853 111222333
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+.+..-.++.....++.-++--..|.|.-+|-++
T Consensus 272 Pgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 272 PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 44444455666666666555444556677777655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.76 Score=39.83 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=34.2
Q ss_pred EeeeecCCCCEEEEEeC-------------------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 317 FSPEYSTAQKYIYTGSS-------------------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~-------------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
..+.+.|||.+.++-+. .|.|.-++..+++. ..+...-.....++|+++|+++++-..+
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 34567788876665442 14455566554443 2332223345789999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.69 Score=37.66 Aligned_cols=231 Identities=11% Similarity=0.116 Sum_probs=118.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc-----cccceeceeeeeeeecCCCCcceeeEEEEEcCCC-------
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARE-----SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG------- 154 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 154 (409)
....|+++|.+.+.++....+...+||....... ....+... .........+.+.|+...
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~--------~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP--------PPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC--------CCCCCCCCccEEEEeCCCceEEcCC
Confidence 3567899999999998888899999999722111 11111100 000112235556665322
Q ss_pred -----CeEEEEEecCeEEEEECCCCee-----eeEEc-CCCCCe-EEEEEeC-CCCcEEEEee-CCCeEEEecccccccC
Q 015301 155 -----QELVAAGSDNFIYVYDLQANKC-----SLRIP-AHKSDV-NTVCFAD-ETGHLIFSGS-DDSLCKVWDRRCFISK 220 (409)
Q Consensus 155 -----~~l~~~~~d~~i~v~d~~~~~~-----~~~~~-~~~~~v-~~~~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~~~ 220 (409)
..++.+++||+|.-|...-+.. ...+. .....| ..+++.. ..+++|+.+. ..++|.+||-.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----- 170 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----- 170 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-----
Confidence 2367788999999998533222 11221 112333 3344441 2356666554 57899999942
Q ss_pred CceeeeeeccccceeEEEEcC------CCCeEE-------------EEeCCCcEEEeeCCCCcccccccccccccccccc
Q 015301 221 GRANGVLMGHLEGITFIDSRR------DGRYFI-------------SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~------~~~~l~-------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 281 (409)
...+..-....++-.-..|.| .+++++ .+..-|.|-+||+..
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------------------- 231 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------------------- 231 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-------------------
Confidence 121111000111100001111 122222 222335666666543
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeee-e-cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc---
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE-Y-STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA--- 356 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--- 356 (409)
..++.+...............|+ | ...+.+|+---.||+|..||..+++.+..+....+
T Consensus 232 ----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 232 ----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred ----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 44444433322222222222221 1 12466777666799999999999998888865433
Q ss_pred ---ceeeeEEec
Q 015301 357 ---PVRDCCWHP 365 (409)
Q Consensus 357 ---~v~~~~~s~ 365 (409)
.++.|.|..
T Consensus 296 ~i~GLWgL~fGn 307 (336)
T TIGR03118 296 KVDGLWSLTFGN 307 (336)
T ss_pred EecCeEEeeeCC
Confidence 457778765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.7 Score=41.53 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC--------eEEEEEeC---------------CCCcEEEEeeCCCeEE
Q 015301 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD--------VNTVCFAD---------------ETGHLIFSGSDDSLCK 210 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i~ 210 (409)
+..++.++.++.|.-.|.++|+.+.++...... ...+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777778899999999999988776432211 12233321 1234788888999998
Q ss_pred EecccccccCCceeeeeeccccce-------------eEEEEcC--CCCeEEEEeC----------CCcEEEeeCCCCcc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGI-------------TFIDSRR--DGRYFISNGK----------DQTTKLWDIRKMSS 265 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~ 265 (409)
-.|.+ +++....+.. .+.+ ..+.-.| .+..+++++. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 88854 6665544321 1111 0111122 1334555542 68899999998776
Q ss_pred cccc
Q 015301 266 NTTD 269 (409)
Q Consensus 266 ~~~~ 269 (409)
.-..
T Consensus 349 ~W~~ 352 (764)
T TIGR03074 349 VWAW 352 (764)
T ss_pred eeEE
Confidence 5443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.2 Score=40.16 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred CCCeEEEEEec-----CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEecccccccCCce
Q 015301 153 DGQELVAAGSD-----NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCFISKGRA 223 (409)
Q Consensus 153 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 223 (409)
++..+++|+.+ ..+..||..+++.... +...... .+++. -++.+.+.|+.++ .+..||.. ......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~--~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHG--DAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECC--CCeEEE
Confidence 45556677653 3577788877654332 2111111 22232 3577777777543 57777753 111122
Q ss_pred eeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCC
Q 015301 224 NGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRK 262 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 262 (409)
...+.........+ .-+|+..+.|+.++ .+..||.++
T Consensus 346 ~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 346 MPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence 22222111111122 22567777777543 355666544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.3 Score=45.10 Aligned_cols=71 Identities=7% Similarity=0.134 Sum_probs=50.8
Q ss_pred EEEEeeeec--CCCCEEEEEeCCCeEEEEEccCCc-eEEE--eccCCcceeeeEEecCc---C---eEEeecCCCeEEEE
Q 015301 314 RCYFSPEYS--TAQKYIYTGSSDNSVYIYDLVSGA-QVAK--LDFHNAPVRDCCWHPIY---P---MLISSSWDCNIVRW 382 (409)
Q Consensus 314 ~~~~~~~~s--~~~~~l~~~~~dg~v~i~d~~~~~-~~~~--~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iw 382 (409)
..+|.+++. ...++||+++....|.||-..... .... -..|...|.+++|-++. . .|++++-.|.+.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 356788887 778899999988888888665421 1111 11255678899997654 2 78888999999999
Q ss_pred ec
Q 015301 383 EI 384 (409)
Q Consensus 383 ~~ 384 (409)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 88
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.95 Score=36.37 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-. .---..++.. ++.+..-.-.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 55677777888777777654 7999999999877655322 2333556665 44555556678999999964 44
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.- .+.=..++ .+++.|+.+.....+.++|..+....... .
T Consensus 121 ~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-------------------------------~ 166 (264)
T PF05096_consen 121 KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-------------------------------Q 166 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-------------------------------E
T ss_pred eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-------------------------------E
Confidence 55554432 23446666 45777777777778999997764322211 1
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc------------C---CcceeeeEEecC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------------H---NAPVRDCCWHPI 366 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------------~---~~~v~~~~~s~~ 366 (409)
....... .....-+.+- +|.+.|=.-....|...|..+|+....+.. + ..-.+.++|.|.
T Consensus 167 V~~~g~p----v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRP----VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE-------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEE----CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 1111110 1111112221 466666666667788889889988776521 1 245789999987
Q ss_pred cC-eEEee
Q 015301 367 YP-MLISS 373 (409)
Q Consensus 367 ~~-~l~s~ 373 (409)
.. +++||
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77 45554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.2 Score=40.52 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 86 WTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+..+.|+||+++|+.+... -.|++.|+.++..... .+. . .-..++|.+|++.|+..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~----~------------~~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLD----N------------VEPSFVWANDSWTFYYV 189 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-ccc----C------------cceEEEEeeCCCEEEEE
Confidence 357788999999999876432 2588888877642111 000 0 11458999999877766
Q ss_pred Eec------CeEEEEECCCC--eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEeccc
Q 015301 161 GSD------NFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRR 215 (409)
Q Consensus 161 ~~d------~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 215 (409)
..+ ..|+.+++.++ +-...+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 542 36888898887 3333343323333322333356776655443 3568888853
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.3 Score=40.22 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=54.3
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC-c----ccc-ccceeceeeeeeeecCCCCcceeeEEEEEcCC---CC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-A----RES-LANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQ 155 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 155 (409)
.-.|..+.++|+|++|+..+..|. .|..+... . ... ..........+.-.-........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 347899999999999999987664 44444221 0 000 00000000000001111234557999999995 57
Q ss_pred eEEEEEecCeEEEEECCCC
Q 015301 156 ELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~ 174 (409)
.|++-+.|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.88 Score=42.25 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=95.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee------eee-------------cccccceEEEEEeCC--CC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK------DIE-------------TKALRWTITDTSLSP--DQ 97 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~------~~~-------------~~~~~~~v~~~~~s~--~~ 97 (409)
..+..+++. . ..+|++|. .+.|.||+.+.-..... ... .......|+.|.... +.
T Consensus 39 fKNNLtals--q-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 39 FKNNLTALS--Q-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred cccceeEEe--c-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 334444443 2 66777765 67899999865422110 000 000111455555433 45
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccc---eeceeeeeeeecC-CCCcceeeEEEEEc--CCCCeEEEEEecCeEEEEEC
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLAN---VTEIHKGLDFSAD-GDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~ 171 (409)
..|+.+..||.|.+|.+++-....... ...........+. ...-...++.++++ ...++||+++....|.||-+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 688999999999999874321000000 0000000000000 00112368999998 78888998888888888765
Q ss_pred CCC--eee-eEEcCCCCCeEEEEEeCCC----C-cEEEEeeCCCeEEEecc
Q 015301 172 QAN--KCS-LRIPAHKSDVNTVCFADET----G-HLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 172 ~~~--~~~-~~~~~~~~~v~~~~~~~~~----~-~~l~~~~~dg~i~iwd~ 214 (409)
... +.. ..-..|...|.+++|.+.+ | ..+++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 432 111 1111256678899998432 2 27888899999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.046 Score=50.60 Aligned_cols=171 Identities=17% Similarity=0.201 Sum_probs=89.4
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe-eeeeee---ecccccceEEEEEeCC---CCcEEEEEecC
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNW-KIQKDI---ETKALRWTITDTSLSP---DQRFLVYASIC 106 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~~~~~d 106 (409)
.++|..+.|-.++|.. +-..++ -.-|.+.||+++--+ .+...+ ....-...+.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4568888888888832 111122 223678899976310 111111 0111112345555655 56778888888
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-----CCeeeeEEc
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-----ANKCSLRIP 181 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~ 181 (409)
+.+++..+.+...............+.+...+ -+.--..+|||..++.++.||.+..|.+. ...++...+
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g-----~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEG-----VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhc-----hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 99999888765542222211111111111100 11112379999999999999998888653 233444556
Q ss_pred CCC-CCeEEEEEeCCCC---------cEEEEee-CCCeEEEec
Q 015301 182 AHK-SDVNTVCFADETG---------HLIFSGS-DDSLCKVWD 213 (409)
Q Consensus 182 ~~~-~~v~~~~~~~~~~---------~~l~~~~-~dg~i~iwd 213 (409)
.|. .+-.|.-++ .+. .++++++ .+..+++|.
T Consensus 280 phd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 280 PHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEee
Confidence 666 333333333 221 1233333 445688887
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.3 Score=35.63 Aligned_cols=183 Identities=11% Similarity=0.115 Sum_probs=103.8
Q ss_pred CeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
-...+.|..+|.++-+.+.-| .|+.+|+++++......-.... --..++.. +++.....-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 345688877888887777665 6999999998554332211111 11223333 344555566789999999987655
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~ 194 (409)
........ .=+.++ .+++.|+.......++.+|.++.+....+... -..++.+.|.
T Consensus 123 ~~~~~y~~----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 123 IGTFPYPG----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEEE-SS----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EEEEecCC----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 43332221 123444 46777887777789999999888776665321 1345667775
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeee---------------ccccceeEEEEcCCCCeEEEEeC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---------------GHLEGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 251 (409)
++.+.|=.-....|...|.. ++.....+. ...+-.+.|++.|..+.|...+.
T Consensus 184 -~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred -cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 55555555555555555632 343333221 11345789999987776665553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.4 Score=35.28 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=120.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..-..++-+|||..-.++...+.|-=.|-.+++.....+.... ....+..-||+...++-+.. -|.-.|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga---~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA---SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC---CCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 4566788899999888888888888888888865554444433 45667788888877764433 4555555554433
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHL 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 199 (409)
......+ ..........|.+.|++-+++.. |.---.|..++ .+..+.. .......|+.. +++..
T Consensus 138 ~f~lp~~------------~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdGsv 202 (353)
T COG4257 138 RFPLPLE------------HADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDGSV 202 (353)
T ss_pred Eeecccc------------cCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEEC-CCCcE
Confidence 2222111 11224777889999988777753 21111222221 1222221 23345678888 88888
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
-++.-.+..|-..|... ...+.+..-......-..+..+|.|+.-++-...+.+..+|-..
T Consensus 203 wyaslagnaiaridp~~--~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 203 WYASLAGNAIARIDPFA--GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EEEeccccceEEccccc--CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88877778888777531 11122222222233445566677888778777777888877654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.32 Score=38.33 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=51.1
Q ss_pred eCCCCcEEEEEecCCEEEEEEcCCCcccccc-ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 93 LSPDQRFLVYASICAIVNIVDVGSSARESLA-NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 93 ~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
+..++.+|++.+.+|.+++||+.+.+..... .+.......... .......|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3346888999999999999999988754333 111111000000 002344688888888887766654 578888887
Q ss_pred CCCeee
Q 015301 172 QANKCS 177 (409)
Q Consensus 172 ~~~~~~ 177 (409)
.-+..+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 654443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.3 Score=43.62 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
....++|+|.-..++.++..|.|.++-...-+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 45678999999999999999999999765443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.7 Score=33.57 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=63.9
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---C---eEEEE--
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---N---FIYVY-- 169 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~v~-- 169 (409)
..|+.+.....|.+|++.............. +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~N 94 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFN 94 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--------------hheeEEEeccccceEEEEEeecCCccceEEEEEEE
Confidence 4555556678899999985555444333322 258999999999999986542 2 45554
Q ss_pred -ECC--CCeeee-EEcC---------------------CCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 170 -DLQ--ANKCSL-RIPA---------------------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 170 -d~~--~~~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+.. ..+++. .+-+ -..++.+++..|-.|++++.. ++.+.+|.++
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 221 111111 1111 234678888887778877654 5679999876
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.064 Score=49.72 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=64.1
Q ss_pred eeEEEEEcC-CCCeEEEEEecCeEEEEECC--CCeeeeEE-----cCCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEec
Q 015301 144 GIFSVKFST-DGQELVAAGSDNFIYVYDLQ--ANKCSLRI-----PAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 144 ~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~--~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd 213 (409)
.+..+.|.. +...+. -.-|.+.|||+. .|+....+ ..-..++.-+.|+| .+.-++..+..++.+++..
T Consensus 134 ~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~ 211 (1283)
T KOG1916|consen 134 GVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLN 211 (1283)
T ss_pred CcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEee
Confidence 566677643 222222 223678888875 34432222 22334555666664 4556777777888888766
Q ss_pred ccccccCCceeeeeeccccceeEEE-----------EcCCCCeEEEEeCCCcEEEeeC
Q 015301 214 RRCFISKGRANGVLMGHLEGITFID-----------SRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
.. ......+++|...+..++ .+|||..++..+.||.++.|.+
T Consensus 212 ~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 212 IN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 43 111244455665554443 5788888888888888877765
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.3 Score=34.83 Aligned_cols=204 Identities=16% Similarity=0.119 Sum_probs=110.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcC------CCeeeeeeeec-c--cccceEEEEEeCCCCc------------E
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVD------KNWKIQKDIET-K--ALRWTITDTSLSPDQR------------F 99 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~------~~~~~~~~~~~-~--~~~~~v~~~~~s~~~~------------~ 99 (409)
..-+.|+|+|.+.+-++...-+...+||.. ....+...... . .....++.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345789999999887777777889999986 12122221111 0 1123577777875332 2
Q ss_pred EEEEecCCEEEEEEcCCCcc---ccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEe-cCeEEEEECCC
Q 015301 100 LVYASICAIVNIVDVGSSAR---ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGS-DNFIYVYDLQA 173 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~-d~~i~v~d~~~ 173 (409)
++.+++||+|.-|...-... ........... ..--..+++.. .+.+|..+.. .++|.++|-.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-----------gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-----------GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCC-----------cceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 56778899999998543322 11111110000 11123344443 3556655543 68888888532
Q ss_pred Ceeee--E-----EcCCCCCeEEEEEeCCCCcEEE-------------EeeCCCeEEEecccccccCCceeeeee--ccc
Q 015301 174 NKCSL--R-----IPAHKSDVNTVCFADETGHLIF-------------SGSDDSLCKVWDRRCFISKGRANGVLM--GHL 231 (409)
Q Consensus 174 ~~~~~--~-----~~~~~~~v~~~~~~~~~~~~l~-------------~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~ 231 (409)
.+... . ++..- ....+.-. .+++++ .|..-|.|-+||+ .+..++.+. +.-
T Consensus 172 ~~~~~~g~F~DP~iPagy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~L 243 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRL 243 (336)
T ss_pred ccccCCCCccCCCCCCCC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcc
Confidence 22110 0 11100 11111111 122222 3334578999996 566666552 233
Q ss_pred cceeEEEEcC------CCCeEEEEeCCCcEEEeeCCCC
Q 015301 232 EGITFIDSRR------DGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 232 ~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...+.|+..| .+.+|+---.||+|..||..+.
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 4556677655 4677777777999999998763
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.0076 Score=51.40 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
..-....|-|.+.-++.++.+..+..||-... .... .. ..+....++|..++..++ .+-..+.+.+||+.+...
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le-~n---~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE-LN---PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcc-eecc-cC---CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 33344567787777888888989999986543 2221 11 122466788888776655 456778999999987654
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
......... . -.-+.|++....++.+...|.+.|++..+.+.....-.|...++++++. +.+ +
T Consensus 110 qqLE~gg~~-------------s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~ 172 (615)
T KOG2247|consen 110 QQLESGGTS-------------S--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-Y 172 (615)
T ss_pred HHHhccCcc-------------h--HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-e
Confidence 333222111 1 1127789988899999889999999988776665555589999999998 443 3
Q ss_pred EEEeeCC
Q 015301 200 IFSGSDD 206 (409)
Q Consensus 200 l~~~~~d 206 (409)
.+.++.|
T Consensus 173 vil~dcd 179 (615)
T KOG2247|consen 173 VILCDCD 179 (615)
T ss_pred eeecCcH
Confidence 3333333
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.29 E-value=5.3 Score=38.34 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=68.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc-----eEEEEEeC----------------CCCcEEEEEecCCEEE
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW-----TITDTSLS----------------PDQRFLVYASICAIVN 110 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------~~~~~l~~~~~dg~i~ 110 (409)
+..|..++.++.|.-.|..+++.+.+......... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777788888889888866655332211110 11122221 1345788888999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEe----------cCeEEEEECCCCeeee
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGS----------DNFIYVYDLQANKCSL 178 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~----------d~~i~v~d~~~~~~~~ 178 (409)
-.|.++++........... .+..........-..+.-.| .+..+++|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~v---dl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV---DLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCce---eeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999988765432211100 00000000000001111112 1335666643 6889999999999988
Q ss_pred EEc
Q 015301 179 RIP 181 (409)
Q Consensus 179 ~~~ 181 (409)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 774
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.42 Score=37.67 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=48.8
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeeeeee------eec-----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKD------IET-----KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 48 ~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~------~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
+..++++|++...+|.+++||+.+++..... +.. ......|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456889999999999999999987554332 111 02345788889998887777655 57788887754
Q ss_pred C
Q 015301 117 S 117 (409)
Q Consensus 117 ~ 117 (409)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=2 Score=42.39 Aligned_cols=151 Identities=15% Similarity=0.313 Sum_probs=84.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--------CCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--------SPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
++.-+| .|+.+.+|+++++......-.... .|..+.. -|.=+++++-+.--.|.++-+.-.+.....
T Consensus 91 ~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh---tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 91 GRAWIT--IDNNLFLWNYESDNELAEYDGLSH---TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred cceEEE--eCCeEEEEEcCCCCccccccchhh---hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 444444 467899999998655444322222 4555442 333345555554566666655433221111
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE--ECCCC---e-e----------------eeEEc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY--DLQAN---K-C----------------SLRIP 181 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~--d~~~~---~-~----------------~~~~~ 181 (409)
...... ..... ....|.++....+|+.+++| .||.|+-. ....+ + + +..+.
T Consensus 166 ~~f~~~--~~i~~----dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 166 SIFNTS--FKISV----DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccccc--eeeec----CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 111111 11111 12258899988888866655 56644322 11211 0 0 11223
Q ss_pred -CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 182 -AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 182 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+..+|..++.. ...+++.+-+..|+|.+||+.
T Consensus 239 ~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 239 GSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCCCcceeeEec-cccceeeeeccCceEEEEEcc
Confidence 567799999998 788899999999999999985
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.3 Score=35.86 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....++++++..|.|++||.- .......+.+....|..+..+.+|+++++.+.. .+.+-|++-
T Consensus 571 TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 345689999999999999942 333344456677889999999999988877754 688888764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=4.1 Score=34.78 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=79.9
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEE-ecccccccCCc-eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKV-WDRRCFISKGR-ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+.++.+. +++.++++ +..|.+.. +|- .+. -..........+.++.+.++++.++++ ..|.+.+=...
T Consensus 172 ~g~~~~i~~~-~~g~~v~~-g~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRS-PDGKYVAV-SSRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEEC-CCCeEEEE-eCCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4568889988 66655554 44565543 231 111 111222334678889999988876654 55655432122
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
... .-....... .......+++.+.+++..+++| .+|.+. ..
T Consensus 244 ~G~----------------------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S 285 (334)
T PRK13684 244 DLE----------------------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VS 285 (334)
T ss_pred CCC----------------------------------ccccccCCc--cccccceeeEEEcCCCCEEEEc-CCCeEE-Ee
Confidence 110 000000000 0000122345567767765554 567554 34
Q ss_pred ccCCceEEEecc---CCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 342 LVSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 342 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
...++.-...+. -....+.+.|..+++.+++ +..|.|..|+-
T Consensus 286 ~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 286 KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 455554444322 2235777888776666554 56799988764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.9 Score=37.24 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECC
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQ 172 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 172 (409)
.|..+.++|+|.+++..|..| |.|..+.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 599999999999999888755 5555553
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.7 Score=35.19 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=20.6
Q ss_pred CeEEEEECCCCeeeeEEcCC--CCCeEEEEEeCCCCcEEEEeeC
Q 015301 164 NFIYVYDLQANKCSLRIPAH--KSDVNTVCFADETGHLIFSGSD 205 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~ 205 (409)
..+.+||..+.+....-... ...-.++... ++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 35888998876654321111 1112234443 5666666664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.9 Score=30.48 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeee-------eeeeecccccceEEEEE---eCC--CCcEEEEEecCCEEEEE
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKI-------QKDIETKALRWTITDTS---LSP--DQRFLVYASICAIVNIV 112 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-------~~~~~~~~~~~~v~~~~---~s~--~~~~l~~~~~dg~i~~w 112 (409)
.-.|......|++++.-|.|.|++....... ...+.... .|++++ |.| +...|+.|+ ...+..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~---~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ---EITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC---ceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 3456666678888888899999986543211 12222333 566665 432 345666666 5678899
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC----CCCeEEEEEecCeEEEEECCCCeeeeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGSDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~ 179 (409)
|+............+ .|.++.+-. +..++++|+ +..|.-+|.+..+...+
T Consensus 79 DV~~N~d~Fyke~~D----------------Gvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 79 DVENNSDLFYKEVPD----------------GVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EcccCchhhhhhCcc----------------ceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 998876554444433 356665532 344455554 56787788765554443
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=6.2 Score=36.15 Aligned_cols=160 Identities=5% Similarity=-0.031 Sum_probs=83.5
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
....+.|+||...+...........+.........-...++.-.|.++| .+-+.-.+...++.................
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~ 414 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWT 414 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecccc
Confidence 4677889999876664433222222222222221223357788888888 666665544455555433212222111111
Q ss_pred ccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccce-eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 84 LRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANV-TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
....|..+..|+||..++.-.. .++|.+--+...... -..+ ... .... .... .+.++.|..++...+.
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~-P~~L~~~p---~~l~---~~l~-~v~sl~W~~~~~laVl 486 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV-PTSLTTTP---LELL---ASPG-TPLDATWVDELDVATL 486 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc-ceEeeecc---EEcc---cCcC-cceeeEEcCCCEEEEE
Confidence 2357999999999988876542 356666544431110 0011 010 0000 0111 5899999999887666
Q ss_pred EEe---cCeEEEEECC
Q 015301 160 AGS---DNFIYVYDLQ 172 (409)
Q Consensus 160 ~~~---d~~i~v~d~~ 172 (409)
+.. +..+++..+.
T Consensus 487 ~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 487 TLAPDGERQVELHQVG 502 (557)
T ss_pred eccCCCCceEEEEECC
Confidence 532 3456666665
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.0079 Score=51.31 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred EEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE-EEecCeE
Q 015301 88 ITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA-AGSDNFI 166 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i 166 (409)
.....|-|.+.-++.++.+..+..||-.......... +.....++|..++..+++ +-..+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~-----------------tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNP-----------------TGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCC-----------------chhHhhhhhccccchhhhhhhcCCCe
Confidence 3445788887779989888888888865443221111 113667888887776544 4457899
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
.+||+.+....+.-.+.+..-.-+.|+ +....++.+...|.+.|++.+ ..+.....-.|...++++++.+.+. .
T Consensus 100 ylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~-v 173 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY-V 173 (615)
T ss_pred eechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce-e
Confidence 999997653222111222222337788 778888889899999999953 4444444444888999999998765 4
Q ss_pred EEEeCCCcEE
Q 015301 247 ISNGKDQTTK 256 (409)
Q Consensus 247 ~~~~~dg~i~ 256 (409)
+.++.|..+.
T Consensus 174 il~dcd~~L~ 183 (615)
T KOG2247|consen 174 ILCDCDNTLS 183 (615)
T ss_pred eecCcHHHHH
Confidence 4444444433
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=4.4 Score=40.17 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=84.0
Q ss_pred EEEeCCC-CcEEEEEecCCEEEEEEcCCCccc-cccceeceeeeeeeecCCCCcceeeEEEE--------EcCCCCeEEE
Q 015301 90 DTSLSPD-QRFLVYASICAIVNIVDVGSSARE-SLANVTEIHKGLDFSADGDEDEFGIFSVK--------FSTDGQELVA 159 (409)
Q Consensus 90 ~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~ 159 (409)
.+-+-|. ++..++ .|+.+.+|+.+++... ....... .|..+. |.|.=+++++
T Consensus 83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh----------------tIl~V~LvkPkpgvFv~~IqhlLv 144 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH----------------TILKVGLVKPKPGVFVPEIQHLLV 144 (1311)
T ss_pred eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh----------------hheeeeeecCCCCcchhhhheeEE
Confidence 3444443 444444 4788999999884432 2211111 122222 3333344444
Q ss_pred EEecCeEEEEECCC----Cee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---c-----
Q 015301 160 AGSDNFIYVYDLQA----NKC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---R----- 222 (409)
Q Consensus 160 ~~~d~~i~v~d~~~----~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~----- 222 (409)
-+.--.|.++-+.- +.. ..++......|+++... .+|+.+++|- || .+|.+--....+ +
T Consensus 145 vaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Ki 220 (1311)
T KOG1900|consen 145 VATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYT-ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKI 220 (1311)
T ss_pred ecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEec-cCCcEEEeec-CC--CEEEEEEeccCchhhcccccc
Confidence 44445566654321 111 02233346678999966 7787777654 55 444432000000 0
Q ss_pred ------------eeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 223 ------------ANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 223 ------------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.+..+. .+.++|..+.....-..+.+-+..|.|.+||+...
T Consensus 221 clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 221 CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 011122 56779999999888888999999999999999873
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.17 Score=43.19 Aligned_cols=163 Identities=9% Similarity=0.122 Sum_probs=95.0
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE-EEEEcCCCCeEEEEEecC
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF-SVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~ 164 (409)
..|..+-..|||+.|.+-+. .++.++++.+.......-..+... +....|+ .+.....|..++++..||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg---------~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG---------DSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC---------chHHHHHHHHHHHhCceeEEEEcCCC
Confidence 36777889999998887765 788899987765433322111110 0001122 122233566788888899
Q ss_pred eEEEE-ECCCC-ee----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 165 FIYVY-DLQAN-KC----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 165 ~i~v~-d~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
.|.-| |...+ .+ ++.++-...++..+.-- .+.+-+++-+..|++.++... ..+.+ .+..-...+.-++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCcceee
Confidence 88877 44322 21 12222223344444332 445567778888988887732 22222 2222334667789
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+||++.++++-. .|.++++.+++...
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCC
Confidence 999999888653 56799998887443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.66 Score=24.94 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEE
Q 015301 323 TAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 323 ~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 363 (409)
|+++.|+++. .++.|.++|..+++.+..+... ..-..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4566666655 5789999999999888887652 33334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.19 E-value=3.8 Score=36.26 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=53.0
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcC---------CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC---
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVG---------SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG--- 154 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 154 (409)
.|..+..++.|..++.++.+|.+.++=.+ +++....-....... .+ ......-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~--~~--ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE--RF--FTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc--ee--eccCCceeeeeccccCCccCC
Confidence 57888899999999999999976654311 111110000000000 00 011123357889999965
Q ss_pred CeEEEEEecCeEEEEECCCCeee
Q 015301 155 QELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
..|..-+.|..|++||+.....+
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchh
Confidence 66777888999999999765443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.59 Score=40.17 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=92.9
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee-eeec-cc-ccceEE-EEEeCCCCcEEEEEecCCEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK-DIET-KA-LRWTIT-DTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~-~~-~~~~v~-~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
+..-...|..+-..|||+.|..-+. ..+.|+++.+.....+ .... .+ ....|+ .+..-..|..|.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3444567888889999998877654 5788998876522111 1111 11 001122 1222335667888888998887
Q ss_pred E-EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 112 V-DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
| |+..+........... .+. ..++..+.-..+.+-+++-+.+|++.++.-...+.+.. ..--..+..+
T Consensus 295 WFdvr~~~~p~l~h~R~f----~l~------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~ 363 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNF----KLA------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLV 363 (733)
T ss_pred eeeeecCCCCcceeeecc----ccC------cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCccee
Confidence 7 5544433222211111 010 11233333333455677777788888877554443322 2223356778
Q ss_pred EEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+++ |+++++++- ..|.++++.+.
T Consensus 364 ~~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 364 AMS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred eeC-cccchheee-cCCceEEEEec
Confidence 898 778877764 45778888864
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.63 E-value=7.6 Score=35.11 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=51.7
Q ss_pred CCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----Ce
Q 015301 96 DQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NF 165 (409)
Q Consensus 96 ~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~ 165 (409)
++++.+.|+.+ ..+..||+.+.+............ . . .-.+++. -+++.++.|+.+ ..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~------~----R-~~h~~~~-~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT------P----R-SFHSMAA-DEENVYVFGGVSATARLKT 295 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC------C----c-cceEEEE-ECCEEEEECCCCCCCCcce
Confidence 45666777654 357788887765433322110000 0 0 0112222 256666677653 34
Q ss_pred EEEEECCCCeeeeEEc-----CCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEeccc
Q 015301 166 IYVYDLQANKCSLRIP-----AHKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRR 215 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~ 215 (409)
+..||+.+.+....-. ..... ..++.. ++++++.++.+ ..+.+||+.
T Consensus 296 ~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVV--QGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEE--CCcEEEEECCCCCccCceEEEECC
Confidence 6788887765432111 01111 122222 45677777655 457888864
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.58 E-value=7.7 Score=35.07 Aligned_cols=140 Identities=10% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcCCCc
Q 015301 51 DGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVGSSA 118 (409)
Q Consensus 51 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~~~~ 118 (409)
++++.+.|+.+ ..+.+||+.+.. ........ .....-.+++. -++++.+.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 45666777654 357788887652 22211110 00001111221 2466677776543 46677777665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEcC----CCCCeEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIPA----HKSDVNTV 190 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~----~~~~v~~~ 190 (409)
........... ........+.+ +++.++.++.+ ..+.+||+.+.+....-.. ......++
T Consensus 306 W~~~~~~~~~~----------~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~ 373 (470)
T PLN02193 306 WFHCSTPGDSF----------SIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS 373 (470)
T ss_pred EEeCCCCCCCC----------CCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE
Confidence 43222110000 00001111222 56666766654 4689999988765432211 11112223
Q ss_pred EEeCCCCcEEEEeeCC
Q 015301 191 CFADETGHLIFSGSDD 206 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~d 206 (409)
+. -++++++.|+.+
T Consensus 374 ~~--~~~~iyv~GG~~ 387 (470)
T PLN02193 374 AA--VGKHIVIFGGEI 387 (470)
T ss_pred EE--ECCEEEEECCcc
Confidence 32 356777777753
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.92 Score=24.35 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 152 TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 152 ~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|++++|+++.. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 56776666554 789999999998888877653 33344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.53 E-value=5 Score=35.50 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
...++|+++..|.|++||--.-+.-..+.+....|..+..+.+|+++++.+. ..+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 4579999999999999996554445566777889999999999997666654 5788888753
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=92.52 E-value=13 Score=37.38 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred eccceEEEEeeecCCCceeecCCCCeEEEEECC---CCCEEE----EEeCCCcEEEEEcCCCeeeeeeeecccccceEEE
Q 015301 18 ADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSN---DGSFFV----AASQESNIKVYNVDKNWKIQKDIETKALRWTITD 90 (409)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~---~~~~l~----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~ 90 (409)
.++..++....+.-......||..+|.|..-.- ..++|| +.+-||++.|=|. ...+.....+....|..
T Consensus 325 nG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~ 400 (1899)
T KOG4659|consen 325 NGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILT 400 (1899)
T ss_pred CCcceEeecCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEE
Q ss_pred EEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 91 TSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 91 ~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+.... ..-++|..--||++.+=|..+.+......... ... .+++=++++......=
T Consensus 401 L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~-~d~---------------------~~N~evvaG~Ge~Clp 458 (1899)
T KOG4659|consen 401 LGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP-QDS---------------------RNNYEVVAGDGEVCLP 458 (1899)
T ss_pred ecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc-ccc---------------------ccCeeEEeccCcCccc
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------------------
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG------------------- 229 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 229 (409)
.|-.-|.--....+.-.....+++. .++.+.++-+ ..|++.| ....+.++.+
T Consensus 459 ~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~--t~IR~iD------~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 459 ADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADG--TRIRVID------TTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred cccccCcchhcccceeccCCceeEc-cCCcEEEecc--cEEEEec------cCceEEEeccCCCCccCccccccccchhh
Q ss_pred -cccceeEEEEcC--------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 230 -HLEGITFIDSRR--------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 230 -~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
|-...+.++.+| |.+.++--..++.|+|---+...|.... +
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~------------------------------~ 579 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLAN------------------------------A 579 (1899)
T ss_pred eeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCC------------------------------C
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeE-EEEEccCCceEEEecc--------------------------
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV-YIYDLVSGAQVAKLDF-------------------------- 353 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v-~i~d~~~~~~~~~~~~-------------------------- 353 (409)
..+..............+++++++|.+.++-+....| ++-.+.+...+..+.+
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A 659 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA 659 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEE
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIV 380 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~ 380 (409)
|-..+.+++.+|||...++-..+-.|+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhhh
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.50 E-value=8.5 Score=35.92 Aligned_cols=70 Identities=19% Similarity=0.075 Sum_probs=45.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
...++++.-+|.|+-++.+..||+|++|+....... ++.... .+-..+.|...| |+++..|..+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEEA---KPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhhc---CCccceeeeccc--eEEEeccchhheeecc
Confidence 355778888999999999999999999998654221 111111 134445665544 5666667776667543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.48 E-value=3.9 Score=31.43 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeec
Q 015301 153 DGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 153 ~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
+|.++.+.+. ...|++||+.+++.+.+-+-....+..=-.. .-++.+ .-.-.+|.-..+|.+ ..+.+..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLTWKEGVAFKYDAD----TLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEEeccceeEEEChH----Hhhhhcccc-
Confidence 4556666555 3579999999998776544321122111111 112223 333467888888865 333333332
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
..+.=..++. |+..|+.+....+++.-|.++
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHH
Confidence 1233344443 455566665555677766655
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.3 Score=32.62 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=104.3
Q ss_pred eeEEecCceeEeeccceE-EEEeeecCCCceeecC---CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 6 EVNYSGRGRFSAADSCHV-LSRYLPVNGPWKVDGM---NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~-~~~~~~~~~~~~l~~h---~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
-+.+|.+-.|++..+..+ +.+...+..+ ++.+. .+--+++..+ |+++.++.-|.-+.+.|+.+.......-..
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP-~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSP-TLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCc-ceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeee
Confidence 355666666666644433 3333333333 33322 2344555554 788888875555888898876443332222
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
....+.-..++.| |++-..+..|+-+.+-|+............... ..+.++..+++-.+++..
T Consensus 168 a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-------------~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 168 ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-------------PGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-------------CceEEEEecCCeeEEEEc-
Confidence 2222333455665 666777778999999999877654333322211 147788888776666655
Q ss_pred ecCeEEEEECCCCeeeeEEcC-CCCCeEEE-EEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 162 SDNFIYVYDLQANKCSLRIPA-HKSDVNTV-CFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+.-+.+-|..+.+....+-. .+..+.++ .+. -.+++......+.-+.+-|+.
T Consensus 232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~-Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVP-VSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred -ccceEEEecCCCCCceEeeccccCCccccccee-cccceeeeeccccCceeEecc
Confidence 34577788776654333311 12222222 121 346666666666667777754
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.4 Score=31.42 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=76.2
Q ss_pred CEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecC---C---EEEEE-EcCCC--ccccc
Q 015301 53 SFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A---IVNIV-DVGSS--ARESL 122 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~i~~w-~~~~~--~~~~~ 122 (409)
+.|+.+...+.|.+|++... ......+.. -+.|..+.++..|++|++--.+ . .+|+| +++.. +....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44444455678999999833 122222222 2479999999999999986422 2 56664 23222 11000
Q ss_pred c-ceec-----e---eeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-ee-----EE-----cC
Q 015301 123 A-NVTE-----I---HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SL-----RI-----PA 182 (409)
Q Consensus 123 ~-~~~~-----~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~-----~~-----~~ 182 (409)
. .+.. . .....+.--.-.-..++.+++..|-...|++|+ ++.+.+|.+..... .. -+ ..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 0 0000 0 000000000001233577888888433455555 46788888764432 11 11 11
Q ss_pred CC-CCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 183 HK-SDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 183 ~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
|. -.+..+++. ++++|..+ +-.+++..
T Consensus 185 ~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlk 212 (215)
T PF14761_consen 185 IDNFKPTQVAIC---EGYIAVMS-DLEVLVLK 212 (215)
T ss_pred ecCceEEEEEEE---eeEEEEec-CCEEEEEE
Confidence 22 235666666 55666654 44566554
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.11 E-value=14 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~ 72 (409)
|.......++|+|...++|.+...|.|++|-...-
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccce
Confidence 44456788999999999999999999999986543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.94 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=20.9
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeC-C--CcEEEE
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQ-E--SNIKVY 67 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~-d--~~i~vw 67 (409)
+....+.-....|||||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445567888999999998876553 4 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.33 E-value=8.3 Score=32.79 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCCeEEEEEe-----cCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCCe----EEEeccc
Q 015301 153 DGQELVAAGS-----DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSL----CKVWDRR 215 (409)
Q Consensus 153 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~iwd~~ 215 (409)
+++..+.|+. ...+..||+.+.+.... +... ......+.. .++.+.+.|+.++. +..||+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 5666666664 24688899887654332 2211 111222222 35677777876543 4577764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.9 Score=32.81 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcE--EEEEecC----CEEEEEEcCCCccccc
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRF--LVYASIC----AIVNIVDVGSSARESL 122 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~--l~~~~~d----g~i~~w~~~~~~~~~~ 122 (409)
|...+++....++-+.+||++.. .++........ -.-...+.+ .++. |++++.. ..|++|.+...... +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 45567888888888999999876 33332111100 011122233 2332 4555432 47999988642111 1
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEE--cC-CCC-eEEEEEecCeEEEEECC---CC----eeeeEEcCCCCCeEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKF--ST-DGQ-ELVAAGSDNFIYVYDLQ---AN----KCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v~~~~ 191 (409)
......... +.. ....++.+|+ ++ +|. +.++...+|.+..|.+. .+ +.++.+.. ...+..|.
T Consensus 142 ~~v~~~~~p--~~~----~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV 214 (381)
T PF02333_consen 142 TDVTDPAAP--IAT----DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV 214 (381)
T ss_dssp EE-CBTTC---EE-----SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred eEcCCCCcc--ccc----ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence 111100000 000 0113666666 33 454 55566678888877663 33 34566653 45788999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccC-Cceeeeee--ccccceeEEEEc--CCCC-eEEEEe-CCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSR--RDGR-YFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~iwd~~~ 262 (409)
.. .....|+.+-++.-|.-|+....... ...+.... .....|..|++- ++++ +|++++ .+++..+|+.+.
T Consensus 215 VD-De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 215 VD-DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EE-TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred Ee-cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 98 67778888988877777775421111 12221221 234567777763 3333 555544 477899999775
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=90.81 E-value=9.8 Score=32.68 Aligned_cols=68 Identities=9% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecc----cccceEEEEEeCCCCcEEEEEecC-----------CEEE
Q 015301 51 DGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETK----ALRWTITDTSLSPDQRFLVYASIC-----------AIVN 110 (409)
Q Consensus 51 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~ 110 (409)
++++++.|+.+ ..+.+||..+.. ........ .....-.+++. -++++++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE-WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE-EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEE
Confidence 45677777753 347788887652 22111110 00001112222 356677777643 2467
Q ss_pred EEEcCCCccc
Q 015301 111 IVDVGSSARE 120 (409)
Q Consensus 111 ~w~~~~~~~~ 120 (409)
+||..+.+-.
T Consensus 163 ~yd~~~~~W~ 172 (341)
T PLN02153 163 AYNIADGKWV 172 (341)
T ss_pred EEECCCCeEe
Confidence 7888776543
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=90.75 E-value=8.4 Score=31.80 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe------cCCEEEEEEcCCCccccccceeceeeeeeee
Q 015301 62 SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS------ICAIVNIVDVGSSARESLANVTEIHKGLDFS 135 (409)
Q Consensus 62 ~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (409)
..|++||..+. +.... ..+..+.|+++.|..+.+.++.|. ....+..||+.+...........
T Consensus 16 ~~lC~yd~~~~-qW~~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNS-QWSSP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCC-EeecC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 34999998876 22222 222556899999987777777664 34578889988776433322110
Q ss_pred cCCCCcceeeEEEEEcC-CCCeEE-EEE-e--cCeEEEEECCCCeeeeE-EcCCCCCeEEEEEe
Q 015301 136 ADGDEDEFGIFSVKFST-DGQELV-AAG-S--DNFIYVYDLQANKCSLR-IPAHKSDVNTVCFA 193 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~-~~~~l~-~~~-~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~ 193 (409)
..-.++|..+.+.. ++..+. .|. . +..|..||-.+...+.. .......|..+.+.
T Consensus 85 ---~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 ---NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred ---ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 01123577776643 333343 333 2 33466666544443333 22223455555554
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.37 E-value=18 Score=35.12 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=68.0
Q ss_pred eeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCee----eeEE-cCCC----------CCeEEEEEeCCCCcEEEEeeCC
Q 015301 143 FGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKC----SLRI-PAHK----------SDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 143 ~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~----~~~~-~~~~----------~~v~~~~~~~~~~~~l~~~~~d 206 (409)
.+...++|+| +...||+....|...||++..... ...+ ..+. +.-..+.|. .+.+.|++++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-~~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-SDSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-CCCCEEEEEcC-
Confidence 3678899998 556899999999999999921111 1111 1111 222367787 56666666554
Q ss_pred CeEEEecccccccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..+.++|++.. ..............|..+.-+|. +..++. ....|...++...
T Consensus 224 ~~l~~~d~~~~--~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 224 SKLMLIDFESN--WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CceEEEECCCC--CccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 56888887521 11111222334567888887776 222322 3357888887763
|
These proteins are found in fungi. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.26 E-value=3.5 Score=31.19 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=25.1
Q ss_pred cceeEEEEcCCC------CeEEEEeCCCcEEEeeCCC
Q 015301 232 EGITFIDSRRDG------RYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 232 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 262 (409)
..+..++|||.| -+|++...++.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999944 3688888999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.6 Score=23.03 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=19.2
Q ss_pred ccCCcceeeeEEecCcCeEEee-cCC--CeEEEE
Q 015301 352 DFHNAPVRDCCWHPIYPMLISS-SWD--CNIVRW 382 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~-~~d--g~i~iw 382 (409)
......-....|||||+.|+-+ ..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345566788999999966544 445 665555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.12 E-value=19 Score=34.98 Aligned_cols=173 Identities=12% Similarity=0.113 Sum_probs=99.0
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCcEEEEEcCCC---------------eeeeeeeecccccceEEEEEeCC
Q 015301 38 GMNSRVYTSQFS---N----DGSFFVAASQESNIKVYNVDKN---------------WKIQKDIETKALRWTITDTSLSP 95 (409)
Q Consensus 38 ~h~~~v~~~~~s---~----~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~ 95 (409)
.-..+|..|.|+ . ..++|++=. ...+.|+...-. ..+..+........+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 567889999998 2 224665543 455777772111 01111111111123678899998
Q ss_pred -CCcEEEEEecCCEEEEEEcCCCccccc--cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC
Q 015301 96 -DQRFLVYASICAIVNIVDVGSSARESL--ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ 172 (409)
Q Consensus 96 -~~~~l~~~~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 172 (409)
+.+.||+....|.-.||++........ ........+. +..+ ......-..+.|.++.+.|++++. ..+.++|++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gs-i~~d-~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGS-IIFD-PEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCcc-ccCC-CcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 457899999999999999932221111 1111111110 0011 111234568889888888888764 568999998
Q ss_pred CCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 173 ANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 173 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
+..... ........|.++.-+|.+...++.-+ ...|...++.
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 876533 12334577889988855444444433 2567777765
|
These proteins are found in fungi. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.11 E-value=11 Score=32.34 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=21.0
Q ss_pred CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC
Q 015301 164 NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
..+.+||..+.+.... +......-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 4688899877654332 2211111223333 356777777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.3 Score=33.16 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=70.6
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCC----Ceee---e
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQA----NKCS---L 178 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~----~~~~---~ 178 (409)
-.+||+.+++........+. -+.+-.+.+||++|.+|+. ...+++++... .... .
T Consensus 48 s~~yD~~tn~~rpl~v~td~---------------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDT---------------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEEecCCCcEEeccCCCCC---------------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 34789888776544332221 1444567889999998876 23577777644 1111 0
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeEEEEeCC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
.+.... .=...... ++|+.|+.|+.+. +..+|.-+...........+.. ...---.+...|+|++++.+..+
T Consensus 113 ~m~~~R-WYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGR-WYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCC-ccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 111111 11222333 6889998888764 3445553211001111111110 11112245568999999888765
Q ss_pred CcEEEeeCCCC
Q 015301 253 QTTKLWDIRKM 263 (409)
Q Consensus 253 g~i~iwd~~~~ 263 (409)
. .|||..+.
T Consensus 191 s--~i~d~~~n 199 (243)
T PF07250_consen 191 S--IIYDYKTN 199 (243)
T ss_pred c--EEEeCCCC
Confidence 4 55677664
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.09 E-value=8.6 Score=30.88 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=63.9
Q ss_pred EECCCCCEEEEEeC-C--CcEEEEEcCC---Ceeeeeee-ecccccceEEEEEeCCCCcEEEEEecCCE-EEEEEcCCCc
Q 015301 47 QFSNDGSFFVAASQ-E--SNIKVYNVDK---NWKIQKDI-ETKALRWTITDTSLSPDQRFLVYASICAI-VNIVDVGSSA 118 (409)
Q Consensus 47 ~~s~~~~~l~t~~~-d--~~i~vw~~~~---~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~~w~~~~~~ 118 (409)
+|-|||++|.+|+. + ..+++++... ........ .....+ .--...-.|||+.|+.|+.... ..+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC-ccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 46789999999875 2 4588888654 11111110 111122 2333445679999999987632 2333321110
Q ss_pred cccccceeceeeeeeeecCC--CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 119 RESLANVTEIHKGLDFSADG--DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.. ... ..+.... .....---.+...|+|+.|+.+..+ -.|||..+.+.+..++.
T Consensus 152 ~~-~~~-------~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PG-PVT-------LPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CC-cee-------eecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence 00 000 0000000 0001112245668999999888754 45678888877666653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.6 Score=40.33 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCc----cccccceece-----eeee-eee-cCCCCcceeeEEEEEcC----CCCeEEE
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSA----RESLANVTEI-----HKGL-DFS-ADGDEDEFGIFSVKFST----DGQELVA 159 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~----~~~~~~~~~~-----~~~~-~~~-~~~~~~~~~v~~~~~~~----~~~~l~~ 159 (409)
++...++++..||.+......... .......... ..++ ... .........+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888899988888776511 1000000000 0000 000 00011123355555555 6778999
Q ss_pred EEecCeEEEEECCCCeeeeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRI 180 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~ 180 (409)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=13 Score=32.58 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCeEEEEEec-----------CeEEEEECCCCeeeeEEcCCCCCe--EEEEEeCCCCcEEEEeeCC
Q 015301 153 DGQELVAAGSD-----------NFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 153 ~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d 206 (409)
++...+.|+.. ..+..||..+.+....-....... .+.... .++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 56666666643 247788887765433211001111 122221 256777777754
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.86 E-value=2 Score=39.72 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=42.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC----Ceeeeeeee-c------------------ccccceEEEEEeCC----CCcEEEE
Q 015301 50 NDGSFFVAASQESNIKVYNVDK----NWKIQKDIE-T------------------KALRWTITDTSLSP----DQRFLVY 102 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~-~------------------~~~~~~v~~~~~s~----~~~~l~~ 102 (409)
++...++.+..||.+....... +........ . ......+..++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888899888877664 111111100 0 01123456666666 7789999
Q ss_pred EecCCEEEEEEcCCCccc
Q 015301 103 ASICAIVNIVDVGSSARE 120 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~ 120 (409)
.+.|+.+|+||+.++++.
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999999873
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=89.13 E-value=13 Score=31.62 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=49.0
Q ss_pred CCCeEEEEEec-----CeEEEEECCCCeee---eEEcCCCCC--eEEEEEeCCCCcEEEEeeC-----CCeEEEeccccc
Q 015301 153 DGQELVAAGSD-----NFIYVYDLQANKCS---LRIPAHKSD--VNTVCFADETGHLIFSGSD-----DSLCKVWDRRCF 217 (409)
Q Consensus 153 ~~~~l~~~~~d-----~~i~v~d~~~~~~~---~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 217 (409)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++.. ++.+.+.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~-- 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLE-- 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCC--
Confidence 55666777653 35777787665531 122111111 1233333 4667777764 2357788865
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc----EEEeeCCC
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT----TKLWDIRK 262 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~ 262 (409)
......+..+... ......+...++++.+.|+.++. +..||.++
T Consensus 148 ~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 148 TQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 1222222222111 11111222335667777776542 34566554
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=14 Score=31.71 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEE-ECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVY-DLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+..+.+.|++.+++++ ..|.+..- |-...........-...+.++.+. +++..++++ ..|.+.+=... .+.
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-~~g~~~~vg-~~G~~~~~s~d----~G~ 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-PDGNLWMLA-RGGQIRFNDPD----DLE 246 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-CCCCEEEEe-cCCEEEEccCC----CCC
Confidence 58889999988766555 45655432 222111222222345678899998 667766654 56776542211 222
Q ss_pred eeeeeec----cccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 223 ANGVLMG----HLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 223 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
.-..... ....+..+.+.+++..++ ++.+|.+.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 1111111 123567888988776544 55666544
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=89.03 E-value=16 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.2
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..|..+...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999998889999999999999999986
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.02 E-value=19 Score=33.36 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=104.7
Q ss_pred CeEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE---EEEEE
Q 015301 42 RVYTSQFSNDGSFFVAA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---VNIVD 113 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~~w~ 113 (409)
.+-.++.|||++++|-+ +..-++++-|+.+++.+..... +....++|.+|++.|.....|.. =++|-
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~-----~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT-----NTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc-----ccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45677889999998854 3345699999998855544322 13567899999988877654432 22332
Q ss_pred --cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCCeeeeE--EcCCCCC
Q 015301 114 --VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQANKCSLR--IPAHKSD 186 (409)
Q Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~--~~~~~~~ 186 (409)
+.+........ +.... .. --.++.-+.+.++|+.... .+.+++.+......... .+...+-
T Consensus 205 h~~gt~~~~d~lv---------yeE~d--~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~ 272 (682)
T COG1770 205 HRLGTPGSSDELV---------YEEKD--DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV 272 (682)
T ss_pred EecCCCCCcceEE---------EEcCC--Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc
Confidence 22211111100 00000 00 1233333445666665543 35677887765543222 2211111
Q ss_pred eEEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC---cEEEeeCCC
Q 015301 187 VNTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLWDIRK 262 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 262 (409)
=..+.- ....+++-...+| ..++..... ......-..+..|...+.--.++--..+|+....++ .|++++..+
T Consensus 273 eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~ 349 (682)
T COG1770 273 EYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT 349 (682)
T ss_pred EEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC
Confidence 111221 2333444444555 455555432 123333445566777666666665566666655433 677777765
Q ss_pred Cc
Q 015301 263 MS 264 (409)
Q Consensus 263 ~~ 264 (409)
++
T Consensus 350 ~~ 351 (682)
T COG1770 350 GE 351 (682)
T ss_pred Cc
Confidence 44
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.90 E-value=18 Score=32.86 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=39.0
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc---ceeEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE---GITFID 238 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~ 238 (409)
..+...++|. +|..+..+.........+... +++.+++... ..+..+|+ .++.........+ .-..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l-~nG~ll~~~~--~~~~e~D~-----~G~v~~~~~l~~~~~~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQL-PNGNLLIGSG--NRLYEIDL-----LGKVIWEYDLPGGYYDFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE--TTS-EEEEEB--TEEEEE-T-----T--EEEEEE--TTEE-B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEc-CCCCEEEecC--CceEEEcC-----CCCEEEeeecCCcccccccccE
Confidence 4566777775 466555553222222125566 7888776655 77888886 3444433332221 135577
Q ss_pred EcCCCCeEEEEe
Q 015301 239 SRRDGRYFISNG 250 (409)
Q Consensus 239 ~~~~~~~l~~~~ 250 (409)
..|+|++|+.+.
T Consensus 197 ~l~nGn~L~l~~ 208 (477)
T PF05935_consen 197 ELPNGNLLILAS 208 (477)
T ss_dssp E-TTS-EEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 788999888776
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.40 E-value=15 Score=31.35 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=39.9
Q ss_pred EEEeeeecCCCCEEEEEeCC-----C-----------eEEEEEccC-CceE----EEecc-----CCcceeeeEEecCcC
Q 015301 315 CYFSPEYSTAQKYIYTGSSD-----N-----------SVYIYDLVS-GAQV----AKLDF-----HNAPVRDCCWHPIYP 368 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~d-----g-----------~v~i~d~~~-~~~~----~~~~~-----~~~~v~~~~~s~~~~ 368 (409)
....++++|+|+.|+++.+. + .|..||..+ ++.. ..+.. ....|+.+.+-++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 34566788899866665432 2 234445544 3222 22222 346789999999999
Q ss_pred eEEee-----cCCCeEEEEecC
Q 015301 369 MLISS-----SWDCNIVRWEIP 385 (409)
Q Consensus 369 ~l~s~-----~~dg~i~iw~~~ 385 (409)
+|+-= +....++++.+.
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred EEEEEccCCCCccceEEEEEEE
Confidence 66642 123445555443
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=88.38 E-value=22 Score=33.27 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEc---------CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CC--
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV---------DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CA-- 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg-- 107 (409)
.+.|-.+.|.++++.+++.-.+|.|.+||. .............. -|..........++++.+. ++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~---fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSK---FVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhh---hhcccccccCCceEEEEEEcCCCc
Q ss_pred -EEEEEEc--CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC
Q 015301 108 -IVNIVDV--GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 108 -~i~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
..+++.+ ................. .....|+-+...|..- .++.|.+|++.+.+...++. -.
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~-------------~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~-l~ 270 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFG-------------LEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS-LP 270 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCC-------------cccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE-ec
Q ss_pred CCeEEE-----EEeCCCCcEEEEeeCCCeEEEecc
Q 015301 185 SDVNTV-----CFADETGHLIFSGSDDSLCKVWDR 214 (409)
Q Consensus 185 ~~v~~~-----~~~~~~~~~l~~~~~dg~i~iwd~ 214 (409)
.-|..- .+.|+..++++.+. +..|++.|+
T Consensus 271 ~ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 271 SIIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred hhhccccccceEeecCCCCeEEEEc-CCEEEEEee
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.7 Score=21.71 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=21.4
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
..+++++.+|.++.+|..+|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999877553
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.11 E-value=16 Score=31.38 Aligned_cols=67 Identities=4% Similarity=0.080 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCeeeeeeeeccc-cc---ceEEEEEeCCCCcEEEEEecC-----CEEEEEEc
Q 015301 51 DGSFFVAASQE-------SNIKVYNVDKNWKIQKDIETKA-LR---WTITDTSLSPDQRFLVYASIC-----AIVNIVDV 114 (409)
Q Consensus 51 ~~~~l~t~~~d-------~~i~vw~~~~~~~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~ 114 (409)
++++++.|+.+ ..+.+||..+.. ......... .. .....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT-WSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE-EEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666777653 257788887652 221111100 00 01122222 46677777643 24777888
Q ss_pred CCCccc
Q 015301 115 GSSARE 120 (409)
Q Consensus 115 ~~~~~~ 120 (409)
.+.+-.
T Consensus 109 ~t~~W~ 114 (341)
T PLN02153 109 VKNEWT 114 (341)
T ss_pred CCCEEE
Confidence 766543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.40 E-value=18 Score=31.27 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe--EEEEEe-c---CeEEE
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE--LVAAGS-D---NFIYV 168 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-d---~~i~v 168 (409)
|...+++....++-+.+||+..........- ....+. -...+.+ +|+. |++++. + ..|++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~G--r~NNVD----------vrygf~l--~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVG--RPNNVD----------VRYGFPL--NGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS---EEEEE----------EEEEEEE--TTEEEEEEEEEE-CCCT-EEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCC--Ccceee----------eecceec--CCceEEEEEEecCcCCCCeEEE
Confidence 3456777778889999999987765433211 111110 1222333 3433 445543 2 46888
Q ss_pred EECC--CCeeeeEEcC-------CCCCeEEEEEe--CCCCc-EEEEeeCCCeEEEeccccccc---CCceeeeeeccccc
Q 015301 169 YDLQ--ANKCSLRIPA-------HKSDVNTVCFA--DETGH-LIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEG 233 (409)
Q Consensus 169 ~d~~--~~~~~~~~~~-------~~~~v~~~~~~--~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~ 233 (409)
|.+. ++. +..+.. ....+..+|+. |.++. +++....+|.+..|.+..... ..+.++.+.. ...
T Consensus 132 f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 132 FRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQ 209 (381)
T ss_dssp EEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-
T ss_pred EEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCc
Confidence 8775 343 332221 12345666663 33444 566677889998888752111 1234444443 347
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+..+........|..+-++.-|.-|+.+.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCC
Confidence 88888888778898888887676666653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=87.03 E-value=17 Score=30.56 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=40.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCC
Q 015301 51 DGSFFVAASQESNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSS 117 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~ 117 (409)
++++|+.|.++| +.+.++... ....+.. +...|+++...+..+.|++-+ ....++++++..-
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 346899999999 555556542 2233322 233699999988777666554 4445999998543
|
Unpublished observations. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=86.88 E-value=16 Score=30.16 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE------ecCeEEEEECCCCeeeeE
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~ 179 (409)
-..|.+||..+.+...... +-.+.|+++.|..+.+.++.|. ....+..||+.+.....
T Consensus 15 C~~lC~yd~~~~qW~~~g~---------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~- 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN---------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS- 78 (281)
T ss_pred CCEEEEEECCCCEeecCCC---------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-
Confidence 3468899988766433322 2234799999987766666664 24568889988765422
Q ss_pred EcC-----CCCCeEEEEEeCCCCc-EEEEee-C--CCeEEEec
Q 015301 180 IPA-----HKSDVNTVCFADETGH-LIFSGS-D--DSLCKVWD 213 (409)
Q Consensus 180 ~~~-----~~~~v~~~~~~~~~~~-~l~~~~-~--dg~i~iwd 213 (409)
+.. -.++|+.+.+...+.. +.++|. . +..|..||
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 222 2478888887544444 443433 2 33466777
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.69 E-value=10 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=21.3
Q ss_pred EEEeeeecCCC------CEEEEEeCCCeEEEEEccC
Q 015301 315 CYFSPEYSTAQ------KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 315 ~~~~~~~s~~~------~~l~~~~~dg~v~i~d~~~ 344 (409)
.+..++|||.| -+|++-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34455666643 4788889999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=22 Score=31.26 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc--
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-- 222 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 222 (409)
...+..++++.+++++.....++-||-........-......++.+.+. +++.+++++ ..|.+..-+- .+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~-~dg~l~l~g-~~G~l~~S~d-----~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWR-ADGGLWLLT-RGGGLYVSKG-----TGLTE 313 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEc-CCCCEEEEe-CCceEEEecC-----CCCcc
Confidence 4456677888877766543333334432211111122235568899998 777777665 5566544331 221
Q ss_pred ---eeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 223 ---ANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 223 ---~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
....... ....+..+.+.+++..+ .++..|.+...
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s 353 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS 353 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe
Confidence 1121111 12347888898777654 45566755554
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.45 E-value=7.1 Score=25.54 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+|.+.-||..+++.......+. -.+.+++++|+.+|+++-
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~----fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLY----FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEES----SEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCC----ccCeEEEcCCCCEEEEEe
Confidence 5788889998884322222222 478899999999888763
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2006 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.68 E-value=22 Score=34.70 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=51.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|......+..+++|...|.+.+++.+..... ........++.++..+.|.|+.+.++.+-..|...+|......
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~ 228 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNI 228 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccccc
Confidence 4444556778899999999999987643211 1111222333367778999999999999888999999876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 409 | ||||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-18 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-18 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-18 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-18 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-18 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-18 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-18 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-18 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-18 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-18 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-18 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-18 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-18 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-17 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-16 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-14 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-11 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-09 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-09 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-08 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-08 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 8e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 7e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 7e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 4e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 7e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 7e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 8e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 8e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 8e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-04 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 1e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-04 |
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.98 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.98 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.9 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.88 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.88 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.85 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.83 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.83 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.82 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.81 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.81 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.79 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.78 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.78 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.77 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.77 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.76 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.74 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.72 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.72 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.72 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.7 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.67 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.66 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.65 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.62 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.6 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.59 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.57 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.56 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.56 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.56 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.54 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.54 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.54 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.45 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.43 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.42 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.42 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.41 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.4 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.4 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.38 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.38 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.37 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.35 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.35 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.35 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.35 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.26 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.22 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.21 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.18 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.15 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.13 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.12 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.11 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.1 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.05 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.04 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.02 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.0 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.98 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.96 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.95 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.94 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.91 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.9 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.89 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.88 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.88 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.88 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.84 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.77 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.77 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.75 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.74 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.69 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.65 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.63 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.63 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.59 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.55 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.53 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.53 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.44 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.42 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.34 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.33 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.33 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.27 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.22 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.2 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.17 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.17 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.17 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.15 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.15 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.15 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.08 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.06 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.95 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.93 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.92 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.92 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.89 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.82 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.81 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.77 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.75 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.73 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.72 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.55 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.42 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.38 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.37 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.33 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.33 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.31 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.29 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.28 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.25 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.24 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.23 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.21 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.17 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.17 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.98 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.88 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.65 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.55 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.55 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.28 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.04 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.03 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.29 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.08 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.62 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.72 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 91.39 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 90.96 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.45 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 88.81 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.51 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 87.03 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 86.86 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.8 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 83.53 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 82.73 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 80.33 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 80.15 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=368.38 Aligned_cols=290 Identities=22% Similarity=0.333 Sum_probs=258.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~---l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 457889999999999999999999999999999999998855443 45677799999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+.+..... .+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.++.+
T Consensus 178 d~~~~~~~~~~---------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 178 DFQGFECIRTM---------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp ETTSSCEEECC---------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred eCCCCceeEEE---------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 99876542211 245668999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC--------------------CCeEEEEeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--------------------GRYFISNGKD 252 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d 252 (409)
+ +++.+|++++.|+.|++||++ .......+.+|...|.+++|+|+ +.+|++++.|
T Consensus 243 ~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 243 N-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred C-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 9 899999999999999999975 66777888899999999999996 6789999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
+.|++||+++ +..+..+.+|.. .+.+++|+|++++|++|+
T Consensus 318 ~~i~iwd~~~----------------------------------~~~~~~~~~h~~------~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 318 KTIKMWDVST----------------------------------GMCLMTLVGHDN------WVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp SEEEEEETTT----------------------------------TEEEEEEECCSS------CEEEEEECSSSSCEEEEE
T ss_pred CeEEEEECCC----------------------------------CceEEEEECCCC------cEEEEEEcCCCCEEEEEe
Confidence 9999999987 455666777763 345567899999999999
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++|++.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-53 Score=354.30 Aligned_cols=290 Identities=15% Similarity=0.251 Sum_probs=254.3
Q ss_pred eeecCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+.+|.+.|++++|+|+ +++|++|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45689999999999985 67999999999999999987632 23344677888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++...... .+...+.+++|+|++++|++++.++.|++||+++++....+..|...|.++
T Consensus 106 lWd~~~~~~~~~~~---------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 106 LWDLENGKQIKSID---------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp EEETTTTEEEEEEE---------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred EEECCCCCEEEEEe---------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 99998876432221 123358889999999999999999999999999999998999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|+ |++++|++++.||.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 171 ~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-------- 237 (321)
T 3ow8_A 171 AYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-------- 237 (321)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT--------
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC--------
Confidence 999 899999999999999999975 6778888999999999999999999999999999999999987
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
......+.+|. ..+.+++|+|++++|++++.|+.|++||+.+++++.+
T Consensus 238 --------------------------~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 238 --------------------------ANLAGTLSGHA------SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp --------------------------CCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred --------------------------cceeEEEcCCC------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 34455566665 2345678999999999999999999999999999999
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+.+|...|.+++|+|++++|++++.||.|++||.+
T Consensus 286 ~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=352.19 Aligned_cols=293 Identities=19% Similarity=0.323 Sum_probs=252.2
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+... ..|...|.+++|+|++++|++++.|+.+++|
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4578899999999999999999999999999999999988655443 3456689999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
++.+........ ....+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|
T Consensus 125 ~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 125 NLKTREGNVRVS-----------RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp ETTTCSBSCEEE-----------EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ECccCCCcceeE-----------EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 998754211110 01124566899999998875 889999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+ |++++|++|+.||.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+++..
T Consensus 193 ~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-------- 259 (340)
T 1got_B 193 A-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-------- 259 (340)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------
T ss_pred C-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------
Confidence 9 789999999999999999976 677788889999999999999999999999999999999998732
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.+..+..+.. ...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 260 --------------------------~~~~~~~~~~----~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 260 --------------------------ELMTYSHDNI----ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp --------------------------EEEEECCTTC----CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --------------------------EEEEEccCCc----ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 2222221111 1124567899999999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+|...|.+++|+|++++|++|+.||.|++||
T Consensus 310 ~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=351.09 Aligned_cols=298 Identities=19% Similarity=0.293 Sum_probs=252.4
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
....+.+|.+.|++++|+|++++||+|+.||+|++||..++....... .|...|.+++|+|++.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 345789999999999999999999999999999999998875554432 34457999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|++.............. + ..|...|.+++|+|++..|++++.|+.|++||+++++.+..+.+|...|.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~-----~----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKS-----V----AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp EECCCCTTCCSGGGCEE-----E----EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEecccccccccccee-----e----eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 99875432211111000 0 13566899999999999999999999999999999999999999999999999
Q ss_pred EeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 192 FADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 192 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
++|. ++++|++|+.||.|++||++ .+.....+.+|...|.+++|+|++.+|++++.|+.|++||++...
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~------ 273 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR------ 273 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------
Confidence 9853 56899999999999999976 677888889999999999999999999999999999999998732
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
.+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.+++.+..
T Consensus 274 ----------------------------~~~~~~~~~~~----~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 321 (354)
T 2pbi_B 274 ----------------------------EVAIYSKESII----FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321 (354)
T ss_dssp ----------------------------EEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ----------------------------EEEEEcCCCcc----cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence 22222222111 1234567999999999999999999999999999999
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+.+|...|++++|+|++++|++++.||.|++|+
T Consensus 322 l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=348.14 Aligned_cols=316 Identities=18% Similarity=0.291 Sum_probs=247.9
Q ss_pred ceeecCCC-CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNS-RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~-~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
.++.+|.+ .|++++|+|+|++||+|+.|++|+|||++++..........+|...|.+++|+|++++|++++.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 46778987 99999999999999999999999999998875444444456788899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe---eeeEEcCCCCCeEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSDVNT 189 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~v~~ 189 (409)
++..+....... ..+|...|.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...|.+
T Consensus 89 ~~~~~~~~~~~~-------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 89 KKNQDDFECVTT-------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EECCC-EEEEEE-------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EccCCCeEEEEE-------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 987654322111 12466689999999999999999999999999998763 45667889999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
++|+ |++++|++++.|+.|++||.+. ........+.+|...|.+++|+|++++|++++.|+.|++||..........
T Consensus 156 ~~~~-p~~~~l~s~s~d~~i~~w~~~~--~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 156 VVWH-PSQELLASASYDDTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEC-SSSSCEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEEC-CCCCEEEEEeCCCcEEEEEecC--CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 9999 8899999999999999999751 122345678899999999999999999999999999999997542211110
Q ss_pred cccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-- 346 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-- 346 (409)
.... ..+....+..+.+ |. ..+++++|+|++..|++++.|+.|++|+...+.
T Consensus 233 ~~~~-------------------~~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 287 (345)
T 3fm0_A 233 ACSG-------------------SDPSWKCICTLSGFHS------RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP 287 (345)
T ss_dssp CCC----------------------CEEEEEEEECSSCS------SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred eeec-------------------cCCccceeEEecCCCC------CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence 0000 0000112223332 22 345677899999999999999999999987542
Q ss_pred -------eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCccc
Q 015301 347 -------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 -------~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
......+|...|++++|+|++. +|++++.||.|++|++...+..
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 1223468999999999999985 9999999999999999876543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=358.66 Aligned_cols=307 Identities=20% Similarity=0.320 Sum_probs=254.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++.+|.+.|++++|+|++++|++|+.|++|+|||+.++..... ...|...|.+++|+|++++|++|+.|+.+++|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 47899999999999999999999999999999999998865544 344666899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE-----cCCCCCe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI-----PAHKSDV 187 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~v 187 (409)
+.+....... ........+|...+.++.|+|+ +..|++|+.|+.|++||+.+++.+..+ .+|...|
T Consensus 137 ~~~~~~~~~~--------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 137 LSSQADRDGN--------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp CCCCSSCCCS--------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCCCccccCC--------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9764321100 0011122356778999999996 457999999999999999999988776 6799999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+++|+|.++++|++|+.|+.|++||++ ........+.+|...|.+++|+|++++|++++.||+|++||+++...
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-- 283 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-- 283 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETT---TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE--
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECC---CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE--
Confidence 9999997799999999999999999986 24466778889999999999999999999999999999999987432
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccce-eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL-RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+..+... ......+.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 284 --------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 284 --------------------------------LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp --------------------------------EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred --------------------------------EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 2222221110 0011224566899999999999999999999999999
Q ss_pred eEEEe----ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKL----DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+..+ .+|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 88777 6899999999999999999999999999999997653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=352.02 Aligned_cols=298 Identities=19% Similarity=0.241 Sum_probs=233.0
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCeeeeee-eecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQ------ESNIKVYNVDKNWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~------d~~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
...+|...|++++|||||++||+|+. |+.|++|+..++...... .....|...|.+++|+|++++ ++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCC
Confidence 34689999999999999999999997 778999998776433222 223456668999999999865 5677899
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.|++||+.+++......... .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~-----------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAK-----------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp CEEEC--------CCCCEEE-----------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEEeeccccceeEEEeecc-----------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 99999998876543332211 2466689999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee--eeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.+++|+|....++++++.||.|++||++ .++... ....|...+.+++|+|++ .+|++++.|+.|++||+++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-- 258 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-- 258 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--
T ss_pred EEEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--
Confidence 9999995455689999999999999986 333333 334567789999999974 6788999999999999987
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~ 343 (409)
.+.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||++
T Consensus 259 --------------------------------~~~~~~~~~~~~------~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 259 --------------------------------PDSAQTSAVHSQ------NITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp --------------------------------GGGCEEECCCSS------CEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred --------------------------------CcEeEEEeccce------eEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 344556666653 34566788887 689999999999999999
Q ss_pred CCceEEEeccCCcceeeeEEec-CcCeEEeecCCCeEEEEecCCCcc
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+++.+..+ +|.+.|++++|+| ++++|+|++.||.|++|+++...+
T Consensus 301 ~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 301 FSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99887665 6999999999998 788999999999999999976544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=335.00 Aligned_cols=293 Identities=15% Similarity=0.205 Sum_probs=247.2
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
....++.+|.+.|++++|+|++++|++++.||+|++||++++..+... ..|..+|.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 345678999999999999999999999999999999999988655543 34566899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNT 189 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~ 189 (409)
+||+.+++..... .+|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+
T Consensus 81 vwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 81 VFNYNTGEKVVDF---------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEETTTCCEEEEE---------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EEECCCCcEEEEE---------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887643221 145568999999999999999999999999999877 555678899999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
++|+|.++.+|++|+.|++|++||++ ....... ..+|...+..+.|+| ++.+|++++.|+.|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99996578999999999999999976 3333333 345667899999986 678999999999999999987
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+..+.+|.. .+...+|+|++++|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMS------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSS------CEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCC------CEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 455667777763 34456799999999999999999999999999
Q ss_pred eEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~ 386 (409)
.+..+..|...+.+++|+|++. ++++|+.| .+.+|++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999999999876 57777655 577888765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=344.60 Aligned_cols=294 Identities=18% Similarity=0.228 Sum_probs=233.3
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------e-eeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-------W-KIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-------~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
..|...|.+++|+|||++|++++ |+++++||.... . ..........+...|.+++|+|++ .|++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46788899999999999999887 678888873210 0 000001112244579999999985 6889999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
|++||+.+++......... .+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~-----------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCK-----------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEEECTTSSCEEEEEEE-----------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeccCCCceeEeeccc-----------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 9999998876543322111 24666899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee--eccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+++|+|.+..+|++++.|++|++||++ .++....+ ..|...+.+++|+|+ +++|++++.||.|++||+++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--- 246 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--- 246 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred EEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC---
Confidence 999995555789999999999999976 45554444 345567899999985 56788999999999999987
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~ 344 (409)
++.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||+.+
T Consensus 247 -------------------------------~~~~~~~~~h~~------~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 247 -------------------------------TSCVLSSAVHSQ------CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ---------------------------------CCEEEECCSS------CEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred -------------------------------CcEEEEEcCCCC------CEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 455677777763 34566899987 5899999999999999988
Q ss_pred CceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCc
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 388 (409)
++.+ .+.+|.+.|++++|+|+++ +|+++|.||+|++|+++...
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 8764 5688999999999999987 57799999999999997643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-50 Score=365.62 Aligned_cols=360 Identities=13% Similarity=0.184 Sum_probs=249.6
Q ss_pred ceeeEEecCceeEeeccce-----EEEEeeecCCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH-----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
.++++|||||+++++.+.. .++.+-.......+.+|.+.|++++|+|++. .|++|+.|++|++||..+++...
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~- 184 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS- 184 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-
T ss_pred eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-
Confidence 5689999999988875432 2333323344557899999999999999987 59999999999999988764433
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
...+|...|.+++|+|++++|++++.|+.|++||+.+++......... ....+|...|.+++|+|++++|
T Consensus 185 --~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--------~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 185 --TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------LKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp --EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------SSSCSSSSCEEEEEECTTSSEE
T ss_pred --eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--------ccccccCCCEEEEEECCCCCEE
Confidence 345688899999999999999999999999999998776432221000 0112577789999999999999
Q ss_pred EEEEecCeEEEEECCCCeeee-------------------------------------------EEcCCCCCeEEEEEeC
Q 015301 158 VAAGSDNFIYVYDLQANKCSL-------------------------------------------RIPAHKSDVNTVCFAD 194 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~ 194 (409)
++++.|+.|++||+.+++.+. .+.+|...|.+++|+
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s- 333 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS- 333 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-
Confidence 999999999999998876543 335799999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc--------
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS-------- 265 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------- 265 (409)
|++++|++++.|+.|++||+. .+.....+ .+|...|.+++|++++ .+++++.|+.+++|++.....
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~----~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDIS----TGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETT----TCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred CCCCEEEEEeCCCcEEEEECC----CCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeee
Confidence 899999999999999999975 22222222 3344455555555433 344444555555554332110
Q ss_pred ------------------------------cccccccccccccccccccccccceeccc-cCccceeee-----------
Q 015301 266 ------------------------------NTTDNSRLRDYDWDYRWMEYPSYARRLKH-PHDQSLATY----------- 303 (409)
Q Consensus 266 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------- 303 (409)
....... ........+.+.+....+.. .....+..+
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee--ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 0000000 00000011111111111100 001111111
Q ss_pred -ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC-CceEEE--eccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 304 -KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS-GAQVAK--LDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
.+|. ..+.+++|+|+|++|++++.|+.|++|++.+ ++.+.. +.+|...|++++|+||+++|++++.|++|
T Consensus 487 ~~~h~------~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 487 TIVHP------AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEECS------SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccCCC------CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 2222 3456779999999999999999999999988 555443 34599999999999999999999999999
Q ss_pred EEEecCCCc
Q 015301 380 VRWEIPGIG 388 (409)
Q Consensus 380 ~iw~~~~~~ 388 (409)
++|++..+.
T Consensus 561 ~lW~~~~~~ 569 (611)
T 1nr0_A 561 IVWNMNKPS 569 (611)
T ss_dssp EEEETTCTT
T ss_pred EEEECCCcc
Confidence 999998755
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=363.78 Aligned_cols=324 Identities=14% Similarity=0.156 Sum_probs=261.2
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..+++|||||++++..... .++..........+.+|...|++++|+|+|++||+|+.|++|+|||+.++.... ....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~-~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee-eEee
Confidence 4578999999987775433 344443345566889999999999999999999999999999999997553322 1234
Q ss_pred ccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-e
Q 015301 82 KALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-E 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 156 (409)
..|...|.+++|+|+++.|++++.+ +.|++||... ... ...+|...|.+++|+|++. .
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~---------------~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNG---------------NLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCB---------------CCCCCSSCEEEEEECSSSSCE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--Ccc---------------eecCCCCCceEEEECCCCCeE
Confidence 5577799999999999999998865 4788887432 111 1135666899999999987 5
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-------c
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------G 229 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 229 (409)
|++++.|+.|++||..+++....+.+|...|.+++|+ |++++|++++.|++|++||++ .+.....+. +
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccc
Confidence 9999999999999999999999999999999999999 899999999999999999965 555555553 7
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
|.+.|.+++|+|++++|++++.|++|++||+++... +..+..+...
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~----------------------------------~~~~~~~~~~ 283 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV----------------------------------EKTIPVGTRI 283 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECCSSG
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------------------------------eeeecCCCCc
Confidence 999999999999999999999999999999987332 2222211100
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.. ......+ +++.+++++.|+.+++||..+++....+.+|...|++++|+|++++|++++.||.|++||+.++..
T Consensus 284 ~~---~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 284 ED---QQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp GG---CEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred cc---eeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 00 0111223 578899999999999999999998889999999999999999999999999999999999987643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=360.84 Aligned_cols=327 Identities=25% Similarity=0.346 Sum_probs=270.7
Q ss_pred ceeeEEecCceeEeeccceEEEEee--ecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYL--PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.++++|+|||+++++.+......++ ..+....+.+|...|++++|+|++++|++++.|+.|++|+.... ... ..
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~ 299 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TL 299 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EE
Confidence 5789999999988775543222222 22333477899999999999999999999999999999997643 332 24
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC-----------------------
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG----------------------- 138 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 138 (409)
.+|...|.+++|+|+++.|++++.|+.|++||..................+.+.+..
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~ 379 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 379 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEE
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEE
Confidence 567779999999999999999999999999998765443222222222222222221
Q ss_pred --CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc
Q 015301 139 --DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 139 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 216 (409)
..|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+ |++++|++++.|+.|++||.
T Consensus 380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-- 455 (577)
T 2ymu_A 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-- 455 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET--
T ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC--
Confidence 157778999999999999999999999999995 567788889999999999999 89999999999999999995
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
.++....+.+|...|.+++|+|++++|++++.|+.|++||...
T Consensus 456 ---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---------------------------------- 498 (577)
T 2ymu_A 456 ---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------------------------------- 498 (577)
T ss_dssp ---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------------------------------
T ss_pred ---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------------------------------
Confidence 5677788899999999999999999999999999999999643
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+.+..+.+|.. .+.+++|+|++++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.|
T Consensus 499 -~~~~~~~~h~~------~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 499 -QLLQTLTGHSS------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp -CEEEEEECCSS------CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred -CEEEEEeCCCC------CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 45666777763 3456689999999999999999999995 788999999999999999999999999999999
Q ss_pred CeEEEEe
Q 015301 377 CNIVRWE 383 (409)
Q Consensus 377 g~i~iw~ 383 (409)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=327.99 Aligned_cols=292 Identities=28% Similarity=0.445 Sum_probs=247.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.+|.+.|++++|+|++++|++++.||.|++|++.++..... ...|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 46789999999999999999999999999999999988755443 345777899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+
T Consensus 94 ~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 94 VSSGKCLKTL---------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp TTTCCEEEEE---------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 9887543221 1345579999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+++++|++++.||.|++||++ .+.....+ ..+...+..++|+|++++|++++.|+.|++||+++.
T Consensus 159 -~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------- 224 (312)
T 4ery_A 159 -RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--------- 224 (312)
T ss_dssp -TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------
T ss_pred -CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------
Confidence 899999999999999999976 44544443 456678999999999999999999999999999873
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
..+..+.+|.......... ...+++.+|++|+.||.|++||+.+++.+..+.
T Consensus 225 -------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 225 -------------------------KCLKTYTGHKNEKYCIFAN---FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp -------------------------EEEEEECSSCCSSSCCCEE---EECSSSCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred -------------------------cEEEEEEecCCceEEEEEE---EEeCCCcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 3344455544322221111 223578999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeec--CCCeEEEEecC
Q 015301 353 FHNAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 385 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 385 (409)
+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 277 ~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999999999986 69999999964
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=328.64 Aligned_cols=291 Identities=18% Similarity=0.279 Sum_probs=243.9
Q ss_pred ceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee--eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..... ........+|...|.+++|+|++++|++++.|+.|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 3688999999999999965 8999999999999999864321 122344567888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++..... .+|...|.+++|+|++.+|++++.|+.|++||++ ++.+..+.+|...|.++
T Consensus 91 ~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 91 LWDVATGETYQRF---------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEETTTTEEEEEE---------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred EEECCCCCeeEEE---------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 9999887643221 1456689999999999999999999999999996 56677888999999999
Q ss_pred EEeCC-----CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 191 CFADE-----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 191 ~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
++.|. ++..|++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.||.|++||+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-- 228 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-- 228 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Confidence 99942 34589999999999999975 66777788899999999999999999999999999999999872
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+.+..+..+. .+.+++|+|++.+|++++.+ .+++|++...
T Consensus 229 --------------------------------~~~~~~~~~~-------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 229 --------------------------------KAMYTLSAQD-------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp --------------------------------EEEEEEECCS-------CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred --------------------------------cEEEEecCCC-------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 3344444332 24567899999999988765 4999999888
Q ss_pred ceEEEec--------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 346 AQVAKLD--------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 346 ~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+..+. .|...+.+++|+|||++|++++.||.|++||+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 7776664 3456799999999999999999999999999865
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=336.37 Aligned_cols=301 Identities=25% Similarity=0.425 Sum_probs=242.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc---------------cccceEEEEEeCCCCcEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK---------------ALRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~ 101 (409)
.+|.+.|++++|+|||++||+|+ ++++++|++.++..+....... .+...|.+++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999987 6789999999886554432211 1222499999999999999
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
+|+.|+.|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMIL---------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEE---------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 9999999999999877543221 2456689999999999999999999999999999998887776
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-------eccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------MGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+...+.+++|+|.++++|++++.||.|++||++ .+.....+ .+|...|.+++|+|++++|++++.|+.
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 567899999996699999999999999999975 44444444 578999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+++......... .........+.+|.. .+.+++++|++++|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~~----------------------~~~~~~~~~~~~h~~------~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKT----------------------PNSGTCEVTYIGHKD------FVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSS------CEEEEEECGGGCEEEEEETT
T ss_pred EEEEECCCCCCcccccC----------------------CCCCcceEEEecccC------cEEEEEECCCCCEEEEEeCC
Confidence 99999986432111000 001223445556652 34566889999999999999
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEec------CcCeEEeecCCCeEEEEecCC
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP------IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+.|++||+.+++++..+.+|...|.+++|++ ++++|++|+.||.|++|++..
T Consensus 332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999886 678999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=327.78 Aligned_cols=307 Identities=19% Similarity=0.269 Sum_probs=230.2
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+.+|.++|++++|+|+ +||+|+.|++|++|++..+. ..........|...|.+++|+|++++|++++.|+.|++|
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 468899999999999987 99999999999999998752 222222233488899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC----CeeeeEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA----NKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~ 188 (409)
|+......... ........+|...|.+++|+|++++|++|+.|+.|++||+.. .+.+..+.+|...|.
T Consensus 86 ~~~~~~~~~~~--------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 86 AKEESADRTFE--------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp EC-------CC--------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred EcccCcCcccc--------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 98643211000 000111235677899999999999999999999999999943 245677889999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ |++.+|++++.|++|++||.+. .....+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.....
T Consensus 158 ~v~~~-p~~~~l~s~s~D~~i~iW~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 158 HVIWH-PSEALLASSSYDDTVRIWKDYD--DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEEC-SSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEEC-CCCCEEEEEcCCCeEEEEECCC--CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence 99999 7899999999999999999751 122567788899999999999998 678999999999999998763211
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
... .......+.. |. ..+++++|++++ +|++++.||.|++||..++
T Consensus 235 ~~~--------------------------~~~~~~~~~~~h~------~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 235 DQQ--------------------------EWVCEAILPDVHK------RQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp SCE--------------------------EEEEEEECCSCCS------SCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ccc--------------------------eeEEeeecccccc------cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 000 0011122222 32 234566777654 8999999999999999877
Q ss_pred c--eEEE-eccCCc-ceeeeEEec--CcCeEEeecCCCeEEEEecCC
Q 015301 346 A--QVAK-LDFHNA-PVRDCCWHP--IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 346 ~--~~~~-~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+ .+.. +.+|.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4 3333 367877 899999999 688999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-48 Score=329.19 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=259.4
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee-
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI- 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~- 79 (409)
..+++|||||++++..... ..+............+|.+.|++++|+|++++|++++ ||.|++|++.++.......
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 4679999999988754321 1111111122234568999999999999999999999 9999999998764333222
Q ss_pred -ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 -ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....|...|.+++|+|++++|++++.|+.|++||+.+++........ .|...+.+++|+|++++++
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDSKVCF 157 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-------------CSSSCEEEEEECTTSSEEE
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-------------cCCCceEEEEECCCCCEEE
Confidence 22357779999999999999999999999999999887532222111 2444799999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
+++.|+.|++||+++++.+..+..|...|.+++|+ +++++|++++.||.|++||++ .......+ .+...+.+++
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~ 231 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLG 231 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEE
T ss_pred EEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEE
Confidence 99999999999999999999999999999999999 789999999999999999975 45555444 4778899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|+|+++++++++.|+.|++||+++.. ...+..|. ..+..
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~-----------------------------------~~~~~~~~------~~v~~ 270 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPD-----------------------------------KYQLHLHE------SCVLS 270 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSC-----------------------------------EEEECCCS------SCEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCC-----------------------------------eEEEcCCc------cceeE
Confidence 99999999999999999999998732 22233333 23456
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 789999999999999999999999999888555 48889999999999999999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=327.43 Aligned_cols=292 Identities=16% Similarity=0.275 Sum_probs=236.3
Q ss_pred CceeecCCCCeEEEEE-----CC-CCCEEEEEeCCCcEEEEEcCCCee----eeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 33 PWKVDGMNSRVYTSQF-----SN-DGSFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~-----s~-~~~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
...+.+|.+.|++++| ++ ++++|++|+.|++|++||+..... ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3578999999999999 77 999999999999999999976421 1223345678889999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE--
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-- 180 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-- 180 (409)
++.|+.|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+.... ....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRF---------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEE---------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred EcCCCcEEEEECCCCcEEEEE---------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 999999999999887543211 1456689999999999999999999999999997433 3333
Q ss_pred -cCCCCCeEEEEEeCCCC----------cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 181 -PAHKSDVNTVCFADETG----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 181 -~~~~~~v~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
..|...|.+++|+ +++ .+|++++.||.|++||. .......+.+|...|.+++|+|++++|+++
T Consensus 158 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 158 KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3688999999999 554 78999999999999994 455667788999999999999999999999
Q ss_pred eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE
Q 015301 250 GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 250 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
+.||.|++||++... .....+... ..+.+++|+|++.+++
T Consensus 232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~-------~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT---------------------------------YPQREFDAG-------STINQIAFNPKLQWVA 271 (343)
T ss_dssp ETTCEEEEEESSCCS---------------------------------SCSEEEECS-------SCEEEEEECSSSCEEE
T ss_pred cCCCeEEEEECCCCc---------------------------------ccceeecCC-------CcEEEEEECCCCCEEE
Confidence 999999999985421 111112111 1245668999998887
Q ss_pred EEeCCCeEEEEEccCCceEE--Eec-----------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 330 TGSSDNSVYIYDLVSGAQVA--KLD-----------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
++ .|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|+++++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 65 57789999998776533 443 67889999999999999999999999999998654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=347.49 Aligned_cols=329 Identities=27% Similarity=0.381 Sum_probs=267.4
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+++++|||||+++++++.+ .+|+ ...+...++.+|.+.|++++|+|||++||+++.|++|+|||.... .+. .
T Consensus 19 V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~-~~~---~ 93 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ---T 93 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---E
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC-EEE---E
Confidence 6899999999999886543 3444 233444688999999999999999999999999999999997543 333 3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece--------------------------------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI-------------------------------- 128 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-------------------------------- 128 (409)
..+|...|.+++|+|++++|++++.|+.+++|+...............
T Consensus 94 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (577)
T 2ymu_A 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeee
Confidence 456777999999999999999999999999999764332111100000
Q ss_pred ---------eeeeeeecCC-------------------------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC
Q 015301 129 ---------HKGLDFSADG-------------------------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 129 ---------~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.....+.+.. ..|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~ 252 (577)
T 2ymu_A 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 252 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TS
T ss_pred eeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 0000111110 146778999999999999999999999999996 46
Q ss_pred eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+.+..+.+|...|.+++|+ +++..|++++.|+.|++||. .+.....+.+|...|.+++|+|++++|++++.|+.
T Consensus 253 ~~~~~~~~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEET-----TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CEEEEEecCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-----CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 7788889999999999999 89999999999999999995 45677788899999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+.. ..+..+.+|. ..+.+++|+|++++|++++.|
T Consensus 327 i~~w~~~~-----------------------------------~~~~~~~~~~------~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 327 VKLWNRNG-----------------------------------QHLQTLTGHS------SSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EEEEETTS-----------------------------------CEEEEECCCS------SCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCC-----------------------------------CeeEEEeCCC------CCEEEEEECCCCCEEEEEeCC
Confidence 99999765 2334444444 234556899999999999999
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~ 416 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999995 6788899999999999999999999999999999999999654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=337.78 Aligned_cols=336 Identities=15% Similarity=0.209 Sum_probs=263.0
Q ss_pred cceeeEEecCce-eEeec----------cc---eEEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGRGR-FSAAD----------SC---HVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~----------~~---~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~v 66 (409)
...+++|||||+ +++++ +. ..+|...... .......|...|++++|+|++++|++++.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 356899999997 77766 22 3455544332 13334479999999999999999999999999999
Q ss_pred EEcCCCee-eeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCccee
Q 015301 67 YNVDKNWK-IQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFG 144 (409)
Q Consensus 67 w~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (409)
|++..... .........|...|.+++|+|+ +++|++++.|+.|++||+.+.+......... .......|...
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~ 167 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL------TPGQSMSSVDE 167 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB------CCCCSCCSSCC
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc------ccccccCCCCC
Confidence 99987211 1123345567789999999998 8999999999999999998876211000000 00011245668
Q ss_pred eEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCC------CCCeEEEEEeCCCCcEEEEeeCCC---eEEEecc
Q 015301 145 IFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAH------KSDVNTVCFADETGHLIFSGSDDS---LCKVWDR 214 (409)
Q Consensus 145 v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~ 214 (409)
|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|.+..++++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999998 789999999999999999999998888766 789999999944457999999998 9999998
Q ss_pred cccccCCceeeeee-ccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 215 RCFISKGRANGVLM-GHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+. .......+. +|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 248 ~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~------------------------------ 294 (416)
T 2pm9_A 248 RN---ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES------------------------------ 294 (416)
T ss_dssp TS---TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS------------------------------
T ss_pred CC---CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC------------------------------
Confidence 62 225566677 8999999999999 899999999999999999987
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccCCceEEEec-------------------
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKLD------------------- 352 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~------------------- 352 (409)
...+..+.+|.. .+.+++|+|++ .+|++++.||.|++||+.+++......
T Consensus 295 ----~~~~~~~~~~~~------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 295 ----AEQLSQFPARGN------WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp ----CCEEEEEECSSS------CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------------------
T ss_pred ----CccceeecCCCC------ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 344556666652 34566899998 899999999999999998765332211
Q ss_pred ----------------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 353 ----------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 ----------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|..++.+++|+|+|++|++++.||.|++|++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16678889999999999999999999999999764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=316.01 Aligned_cols=293 Identities=19% Similarity=0.267 Sum_probs=240.1
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
+|+||.+.|++++|+|+ +++||||+.|++|+|||+...+.. .......+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 68899999999999998 689999999999999999875332 223345678889999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee-eEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~ 190 (409)
|+............ +...+....+++++++|++++.|+.+++||+...... ....+|...+..+
T Consensus 113 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 113 WDLTTGTTTRRFVG---------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EETTTTEEEEEEEC---------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred EeecccceeeeecC---------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 99987654332221 2235788899999999999999999999999766543 3456799999999
Q ss_pred EEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 191 CFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 191 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+|++. ...++++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.||.|++||+++.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------ 247 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------ 247 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC------
Confidence 99843 24578899999999999975 77788888999999999999999999999999999999999872
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
..+..+..+. .+..+.++|++.+ ++++.|+.|++||++++..+.
T Consensus 248 ----------------------------~~~~~~~~~~-------~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 248 ----------------------------KHLYTLDGGD-------IINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp ----------------------------EEEEEEECSS-------CEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEE
T ss_pred ----------------------------ceeeeecCCc-------eEEeeecCCCCce-eeccCCCEEEEEECCCCeEEE
Confidence 3344444433 2344567887665 556679999999999887766
Q ss_pred Eec---------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 350 KLD---------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 350 ~~~---------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+. +|...|++++|+|++++|++|+.||.|++||+.++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 553 688899999999999999999999999999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=328.60 Aligned_cols=332 Identities=17% Similarity=0.188 Sum_probs=262.6
Q ss_pred cceeeEEecCce-eEeeccc---eEEEEe----eecC------CCceeec----------CCCCeEEEEECCCCCEEEEE
Q 015301 3 VGREVNYSGRGR-FSAADSC---HVLSRY----LPVN------GPWKVDG----------MNSRVYTSQFSNDGSFFVAA 58 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~---~~~~~~----~~~~------~~~~l~~----------h~~~v~~~~~s~~~~~l~t~ 58 (409)
.+.+++|||||+ ++++++. ..+|.. .... ....+.. |.+.|++++|+|++++|+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 357899999999 8887554 345555 2222 1223333 78899999999999999999
Q ss_pred eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 59 SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 59 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
+.||.|++|+. ++..... ...|...|.+++|+|++++|++++.|+.|++||+.+++....................
T Consensus 127 ~~dg~i~i~~~-~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 127 VENGELRLWNK-TGALLNV---LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp ETTSCEEEEET-TSCEEEE---ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred eCCCeEEEEeC-CCCeeee---ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 99999999994 4433333 3456779999999999999999999999999999887654333221111000000000
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
......+.+++|+|++ .+++++.++.|++||+.+++.+..+..|...|.+++|+ +++++|++++.||.|++||++
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~--- 277 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSASDDGTLRIWHGG--- 277 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEECSS---
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECC---
Confidence 0111228889999886 58889999999999999999999999999999999999 789999999999999999975
Q ss_pred cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.......+..|...|.+++|+|++ ++++++.|+.|++||+++ ..
T Consensus 278 -~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~----------------------------------~~ 321 (425)
T 1r5m_A 278 -NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ----------------------------------NT 321 (425)
T ss_dssp -SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT----------------------------------TE
T ss_pred -CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC----------------------------------Cc
Confidence 667777788899999999999999 999999999999999987 33
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--------------------eEEEeccCCc--
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------------------QVAKLDFHNA-- 356 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------------------~~~~~~~~~~-- 356 (409)
.+..+..|. ..+.+++|+|++++|++++.||.|++||+.+++ .+..+..|..
T Consensus 322 ~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 322 LLALSIVDG------VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp EEEEEECTT------CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred EeEecccCC------ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 444555544 234566899999999999999999999999988 8999999976
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.|++++|+|++++|++++.||.|++|+++
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=334.85 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=228.7
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
...+|...|+|++|+| ++++||+|+.||+|+|||+.++.. .......+|...|++++|+| ++++|++++.||+|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 5668999999999999 567999999999999999987743 23345667888999999998 68999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+++........ ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|
T Consensus 193 d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 193 DFKGNILRVFAS-------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp ETTSCEEEEEEC-------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEE
T ss_pred eccCCceeEEec-------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeee
Confidence 997654322111 11223357899999999999999999999999986 4566778899999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+|....+|++++.|+.|++||++.... ........+|...|++++|+|++++|++++.||.|++||+++........
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-- 335 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-- 335 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC--
T ss_pred cCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe--
Confidence 955556899999999999999873221 12233446799999999999999999999999999999998854332221
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-----------e-CCCeEEEE
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-----------S-SDNSVYIY 340 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-----------~-~dg~v~i~ 340 (409)
.|..........+...++|++.+++++ + .++.|++|
T Consensus 336 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 336 --------------------------------PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp --------------------------------CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred --------------------------------cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 111000000001112233334444333 3 34679999
Q ss_pred EccCCceEEEec-cCCcceeee-EEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 341 DLVSGAQVAKLD-FHNAPVRDC-CWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 341 d~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|..+++.+..+. +|...|.++ +|+|++++|++|+ |+.|+||++.+++.
T Consensus 384 d~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 384 DGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred ECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 999999988874 678889888 6999999999876 88999999987653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=323.78 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=239.1
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|+|++.++++++. ..+|+.........+.+|.+.|++++|+|++++|++|+.|++|++||+.+...+..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~--- 187 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--- 187 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC---
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---
Confidence 568999999998888654 45666555566678999999999999999999999999999999999988755443
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|.+++|+|++++|++++.|+.|++||+.++...... .+|...|.+++|+|++.+|++|
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------------TGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------eCCCccEEEEEECCCCCEEEEE
Confidence 4567779999999999999999999999999999887643221 1345579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC-------------------CCcEEEEeeCCCeEEEecccccccCC
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-------------------TGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
+.|+.|++||+.+++....+.+|...|.+++|+|. .+.+|++|+.|+.|++||++ .+
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~ 328 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TG 328 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TT
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CC
Confidence 99999999999999999999999999999999942 16789999999999999975 77
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
..+..+.+|...|.+++|+|++++|++++.||.|++||+++ ...+.
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~----------------------------------~~~~~ 374 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------------------------------KRCMK 374 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT----------------------------------SCCCE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------CceEE
Confidence 88888999999999999999999999999999999999977 34566
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+.+|.. .+.+++|+|++.+|++|+.||.|++|+++
T Consensus 375 ~~~~h~~------~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEH------FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSS------CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCC------cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 6677763 35677899999999999999999999863
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=319.78 Aligned_cols=308 Identities=17% Similarity=0.173 Sum_probs=240.9
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++.... .....+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 678999999999999999 999999999999999999874443 334456788999999999 78999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+........ ...+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus 147 d~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 147 DFSGSVIQVFAK-------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp ETTSCEEEEEEC-------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred ECCCCceEEEec-------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 998533211111 1133457999999999999999999999999999 57788889999999999999
Q ss_pred eCCCCc-EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 193 ADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 193 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+ +++. +|++++.|+.|++||++...........+ +|...|.+++|+| ++++|++++.|+.|++||+++........
T Consensus 213 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 213 N-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp C-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred C-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 9 6666 99999999999999987432234555555 6999999999999 99999999999999999998855432221
Q ss_pred ccccccccccccccccccceeccccCcccee-eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
....... .....+. .+... ......+++|++++ +|+.||.|++||+.+++.+.
T Consensus 291 ~~~~~~~-----------------~~~~~~~~~~~p~-------~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 291 IHPHRQF-----------------QHLTPIKATWHPM-------YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp ECCBCCC-----------------TTSCCCCCEECSS-------SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred ccccccc-----------------ccccceEEeccCC-------CCceEEEecCCccc--ccCCCCeEEEEecCCCceee
Confidence 1000000 0000000 00000 11223467788887 88899999999999999999
Q ss_pred Eecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+.+ |...+..++|+|++++|++++ ||.|++||+++
T Consensus 345 ~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9987 456777889999999999997 99999999875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=309.40 Aligned_cols=277 Identities=21% Similarity=0.336 Sum_probs=232.2
Q ss_pred ceeeEEecC----ceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGR----GRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~d----g~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
+.+++|+|+ +.++++++.+ .+|...... ....+.+|...|.+++|+|++.++++++.|++|++||+.++..
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~ 114 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 114 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE
Confidence 578999985 4577775543 445443222 2246889999999999999999999999999999999999866
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
+.... .+...+.+++|+|++++|++++.+|.|++|++.+++...... .+...|.+++|+|++
T Consensus 115 ~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------------~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 115 IKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------------TRGKFILSIAYSPDG 176 (321)
T ss_dssp EEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---------------CSSSCEEEEEECTTS
T ss_pred EEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---------------CCCceEEEEEECCCC
Confidence 55433 344578899999999999999999999999998876432211 223369999999999
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
++|++++.|+.|++||+++++.+..+.+|..+|.+++|+ |++.+|++++.|+.|++||++ .......+.+|...|
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHASWV 251 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETT----TCCEEEEECCCSSCE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCCCce
Confidence 999999999999999999999999999999999999999 899999999999999999975 667788889999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.+++|+|++++|++++.|+.|++||+++ ...+..+.+|. .
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~----------------------------------~~~~~~~~~h~------~ 291 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGT----------------------------------RTCVHTFFDHQ------D 291 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCS------S
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCC----------------------------------CEEEEEEcCCC------C
Confidence 9999999999999999999999999987 45566666665 3
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+++++|+|++++|++++.||.|++||..
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 45677899999999999999999999963
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=313.01 Aligned_cols=291 Identities=16% Similarity=0.215 Sum_probs=249.9
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++..+.. ...|...|.+++|+|++++|++++.||.|++||
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 47889999999999999999999999999999999998865544 345677999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCe-----------ee
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANK-----------CS 177 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~-----------~~ 177 (409)
+.+++...... +...+.+++|+|+++++++++.+ +.|.+||+.... ..
T Consensus 103 ~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 103 VSNGQCVATWK----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp TTTCCEEEEEE----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred CCCCcEEEEee----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 98876543322 22369999999999999999998 999999997653 33
Q ss_pred eEEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 178 LRIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+..|.. .+.+++|+ +++++|++++.||.|++||++ ........+..|...|.+++|+|++++|++++.|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 242 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS---NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS 242 (369)
T ss_dssp EEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT---TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC---CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE
Confidence 44555666 99999999 799999999999999999975 1267778888899999999999999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+++. ..+..+... ..+..+.++|+++++++++.++
T Consensus 243 ~v~d~~~~----------------------------------~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 243 FLVDVSTL----------------------------------QVLKKYETD-------CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEETTTC----------------------------------CEEEEEECS-------SCEEEEEECSSSSEEEEEECCC
T ss_pred EEEECCCC----------------------------------ceeeeecCC-------CCceeEEecCCCceEEEeecCC
Confidence 99999873 333333321 2234567899999999999988
Q ss_pred --------------eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 336 --------------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 336 --------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=332.91 Aligned_cols=346 Identities=12% Similarity=0.173 Sum_probs=251.4
Q ss_pred EEecCceeEeeccceEEEEeeecCCCcee-ecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC---Ceeeeeeeecc
Q 015301 8 NYSGRGRFSAADSCHVLSRYLPVNGPWKV-DGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDK---NWKIQKDIETK 82 (409)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~ 82 (409)
.|+|++..++.... |. ........+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........ .
T Consensus 34 ~f~~~~~~~~~~~~---w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~ 108 (437)
T 3gre_A 34 EFGPIQEIVRSPNM---GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-Y 108 (437)
T ss_dssp GGCCCCCCCCCCCG---GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-E
T ss_pred hcCCcccccccccc---cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-c
Confidence 46788887776552 11 112222356 78999999999999 999999999999999999876 422211111 2
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcC---CCccccccceeceeeeeeeecCCCCcceeeEEEE--EcCCCCeE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---SSARESLANVTEIHKGLDFSADGDEDEFGIFSVK--FSTDGQEL 157 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l 157 (409)
.|...|.+++|+|++++|++++.||.|++||+. +++........ ....+.+.+. ++...+.++. +++++.+|
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNF--GKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG--SSCCCEEEEEEEECSSCEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCc--ccccCceEEEEEEcCCCCEE
Confidence 467799999999999999999999999999995 33322211111 1112222221 1344577777 66899999
Q ss_pred EEEEecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccce
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGI 234 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v 234 (409)
++++.|+.|++||+++++.+..+.. |...|++++|+ +++++|++|+.||.|++||++ .+..+..+. .|..+|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPI 260 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCce
Confidence 9999999999999999999999987 89999999999 889999999999999999976 566766665 788899
Q ss_pred eEEEEc----CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec--ccc
Q 015301 235 TFIDSR----RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG--HSV 308 (409)
Q Consensus 235 ~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 308 (409)
.+++|+ |++.+|++++.||.|++||+++............. .....+.+....+ .-..+.+ |.
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l------~~~~~~~~~~~- 329 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ----PSMEHFLPIEKGL------EELNFCGIRSL- 329 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC----CCGGGGSCBCSSG------GGCCCCCCCSG-
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC----Cccceeccccccc------ccceecccccC-
Confidence 999655 56789999999999999999876544332211000 0000111111000 0001222 22
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-----------------------------------
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF----------------------------------- 353 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----------------------------------- 353 (409)
..+.+++|+ ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 330 -----~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 330 -----NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp -----GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred -----CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 223455777 679999999999999999999887776665
Q ss_pred --CCcceeeeEEecC--cCeEEeecCCCeEEEEe
Q 015301 354 --HNAPVRDCCWHPI--YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 --~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~ 383 (409)
|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=309.29 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=222.3
Q ss_pred ceeeEEecCceeEeeccce-------EEEEeeec--C----CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 4 GREVNYSGRGRFSAADSCH-------VLSRYLPV--N----GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-------~~~~~~~~--~----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
..+++|||||+++++.+.. .++.+... . .......|...|++++|+|++ .|++|+.||+|+|||++
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc
Confidence 5689999999998876521 11111111 1 112334567889999999985 68899999999999999
Q ss_pred CCeeeeee-eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 71 KNWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
+++..... ....+|...|++++|+|++++|++|+.|+.|++||+.+++..... .+|...|.+++
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~---------------~~h~~~V~~~~ 176 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY---------------RAHAAQVTCVA 176 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEE
T ss_pred CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------cCcCCceEEEE
Confidence 88654432 345578889999999999999999999999999999887643221 24666899999
Q ss_pred EcCCCC-eEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 150 FSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 150 ~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
|+|++. +|++++.|+.|++||+++++....+. .|...+.+++|+|.++++|++|+.||.|++||++ .++.+..
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~ 252 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLS 252 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEE
T ss_pred ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEE
Confidence 999875 67899999999999999998887763 4567899999997788899999999999999976 6788888
Q ss_pred eeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 227 LMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 227 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
+.+|...|++++|+|++ ++|++++.|++|++||+++. .+..+.+
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-----------------------------------~~~~~~~ 297 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-----------------------------------ELFRSQA 297 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-----------------------------------EEEEECC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-----------------------------------cEEEEcC
Confidence 99999999999999998 57999999999999998872 2334566
Q ss_pred ccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEccCCc
Q 015301 306 HSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~~~~ 346 (409)
|. ..+.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 298 H~------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 298 HR------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CS------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CC------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 65 3456778999886 57789999999999997654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=337.01 Aligned_cols=290 Identities=22% Similarity=0.278 Sum_probs=236.3
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
.+.+|.+.|++++|+|++ ++|+||+.|++|++|++...... .......+|...|.+++|+|++++|++|+.||.|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999875 79999999999999999764221 122345678889999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE---cCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~ 188 (409)
||+.++...... .+|...|.+++|+|++++|++++.|+.|++||.......... .+|...|.
T Consensus 457 wd~~~~~~~~~~---------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 457 WDLAAGVSTRRF---------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EETTTTEEEEEE---------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred EECCCCcceeEE---------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 999887543221 145668999999999999999999999999998655433322 46889999
Q ss_pred EEEEeCCCC--cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ +++ ..|++++.|+.|++||++ .......+.+|.+.|.+++|+|++++|++++.||.|++||+++.
T Consensus 522 ~~~~~-~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--- 593 (694)
T 3dm0_A 522 CVRFS-PNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--- 593 (694)
T ss_dssp EEEEC-SCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---
T ss_pred EEEEe-CCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence 99999 544 689999999999999975 66777888999999999999999999999999999999999873
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+..+..+. .+.+++|+|++.+|++++ ++.|++||+.+++
T Consensus 594 -------------------------------~~~~~~~~~~-------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 594 -------------------------------KKLYSLEANS-------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp -------------------------------EEEECCBCSS-------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred -------------------------------ceEEEecCCC-------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 2233333222 234567899998888776 5569999999998
Q ss_pred eEEEeccCC-------------------cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDFHN-------------------APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~~~-------------------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+..+..+. ..+++++|+|++++|++|+.||.|++|++..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 887775332 1378899999999999999999999999853
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=302.42 Aligned_cols=289 Identities=16% Similarity=0.211 Sum_probs=244.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.+.|++++| |++++|++++.||.|++||+.++...... ..|...|.+++|+|++++|++++.||.|++|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3578899999999999 99999999999999999999887554443 3456689999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
++............ ..|...|.+++| +++++++++.|+.|++|| .++....+..|...+.+++|
T Consensus 87 ~~~~~~~~~~~~~~------------~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 87 PLFATSGEDPLYTL------------IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp ETTCCTTSCC-CEE------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred EeeecCCCCcccch------------hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 99775432221111 245567999999 677999999999999999 67788888899999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
.|++++++++++.||.|++|| .......+.. |...+.+++|+|++. +++++.||.|++||+++
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~--------- 214 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT--------- 214 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT---------
T ss_pred ccCCCCEEEEEECCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc---------
Confidence 966999999999999999999 3445555665 889999999999988 99999999999999987
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+..+..+.+|. ..+.+++|+|++ .|++++.||.|++||+.+++.+..+
T Consensus 215 -------------------------~~~~~~~~~~~------~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 215 -------------------------GDVLRTYEGHE------SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp -------------------------CCEEEEEECCS------SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred -------------------------hhhhhhhhcCC------ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 34455666665 234566899998 5889999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|...|.+++|+|+++ +++++.||.|++|++.+....
T Consensus 263 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999999999998 667889999999999876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=314.86 Aligned_cols=299 Identities=13% Similarity=0.126 Sum_probs=243.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.+..|.++|++++|+|++++|++++.|+.|++||+.++. .........|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 456799999999999999999999999999999998874 1122234467779999999999999999999999999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee---eeE-EcCCCCCeEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---SLR-IPAHKSDVNTV 190 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~-~~~~~~~v~~~ 190 (409)
.+++....... ..|...|.+++|+|++++|++++.|+.|++||+..++. ... ...|...|.++
T Consensus 82 ~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 82 KGRTWKPTLVI-------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ETTEEEEEEEC-------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred CCCeeeeeEEe-------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 77653222111 13455799999999999999999999999999988763 233 36789999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEeccccc--------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCF--------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
+|+ +++++|++++.||.|++||++.. ...+.....+..|...|.+++|+|++++|++++.||.|+
T Consensus 149 ~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 149 DWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 999 78999999999999999996411 124566777778999999999999999999999999999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
+||+++ ...+..+..|. ..+.+++|+|++++|++| .|+.
T Consensus 228 i~d~~~----------------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 228 LADADK----------------------------------KMAVATLASET------LPLLAVTFITESSLVAAG-HDCF 266 (372)
T ss_dssp EEEGGG----------------------------------TTEEEEEECSS------CCEEEEEEEETTEEEEEE-TTSS
T ss_pred EEECCC----------------------------------CceeEEEccCC------CCeEEEEEecCCCEEEEE-eCCe
Confidence 999987 34455555554 234566788899988888 8999
Q ss_pred EEEEEccC--Cce--------------------------------E------EEe-ccCCcceeeeEEe-cCc---CeEE
Q 015301 337 VYIYDLVS--GAQ--------------------------------V------AKL-DFHNAPVRDCCWH-PIY---PMLI 371 (409)
Q Consensus 337 v~i~d~~~--~~~--------------------------------~------~~~-~~~~~~v~~~~~s-~~~---~~l~ 371 (409)
|++|++.+ ++. . ..+ .+|..+|++++|+ +++ ++|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 421 0 233 4899999999976 666 8999
Q ss_pred eecCCCeEEEEecCCCcc
Q 015301 372 SSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 372 s~~~dg~i~iw~~~~~~~ 389 (409)
+++.||.|++|++.+.++
T Consensus 347 s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEETTSEEEEEEHHHHHH
T ss_pred EecCCCceEEEEecChhH
Confidence 999999999999977544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=316.67 Aligned_cols=293 Identities=13% Similarity=0.128 Sum_probs=243.1
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------eeeeeeecccccceEEEEEeCCC----C---cEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW------KIQKDIETKALRWTITDTSLSPD----Q---RFL 100 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~----~---~~l 100 (409)
..+.+|.+.|++++|+| ++|++++.||.|++|++.++. .... ...|...|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE---EecCCCcEEEEEEecccccCCccccEE
Confidence 46789999999999999 899999999999999998875 2333 3467779999999999 9 999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc-----ceeeEEEEEc----CCCCe-EEEEEecCeEEEEE
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-----EFGIFSVKFS----TDGQE-LVAAGSDNFIYVYD 170 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~v~d 170 (409)
++++.||.|++|++.+++.......... ..| ...|.+++|+ |++++ |++++.||.|++||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL----------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE----------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceee----------cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9999999999999987664111000000 122 3579999999 99999 99999999999999
Q ss_pred CCC------Ceeee-----EE-------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec---
Q 015301 171 LQA------NKCSL-----RI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--- 229 (409)
Q Consensus 171 ~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 229 (409)
+.+ ++.+. .+ ..|...|.+++|+ +++ +|++++.||.|++||++ .......+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQHS 228 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC-
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEecccc
Confidence 998 66665 66 4589999999999 777 99999999999999976 6777788888
Q ss_pred c---ccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 230 H---LEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 230 ~---~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
| ...|.+++|+|++++|++++.| |.|++||+++.. .+..+
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----------------------------------~~~~~ 274 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----------------------------------RIGSL 274 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----------------------------------EEEEE
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----------------------------------cccee
Confidence 8 9999999999999999999999 999999998732 23333
Q ss_pred ec-------------ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec------cC----------
Q 015301 304 KG-------------HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------FH---------- 354 (409)
Q Consensus 304 ~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------~~---------- 354 (409)
.+ |. ..+.+++|+|++++|++++.||.|++||+.+++.+..+. +|
T Consensus 275 ~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHS------SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348 (397)
T ss_dssp CBC--------CCBSBS------SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred ccCcccccccccccccC------CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccc
Confidence 33 33 335567899999999999999999999999999999998 88
Q ss_pred -----CcceeeeEEecCc----------CeEEeecCCCeEEEEecCCC
Q 015301 355 -----NAPVRDCCWHPIY----------PMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 355 -----~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~ 387 (409)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 349 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 349 GDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=300.93 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=212.2
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|.+++|+|++++|++++.||.|++||+.++....... .|..+|.+++|+|++++|++|
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ---------------VTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------------CCSSCEEEEEEEGGGTEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee---------------ccCCcEEEEEEeCCCCEEEEE
Confidence 45677799999999999999999999999999998875432211 234479999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|++||+.+++.+..+.+|...|.+++|+ |++.+|++|+.|++|++||++ ........+.+|...|.+++|+
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG---GTTEEEEEECCCCSCEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC---CCcchhhhhcccCCcEEEEEEC
Confidence 999999999999999999999999999999999 889999999999999999975 2234556788999999999999
Q ss_pred C-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEe
Q 015301 241 R-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFS 318 (409)
Q Consensus 241 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 318 (409)
| ++.+|++++.|+.|++||++.... ...+. ++... +..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~----------------------------------~~~~~~~~~~~------v~~ 189 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTP----------------------------------NFTLTTGQERG------VNY 189 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSC----------------------------------SEEEECCCTTC------EEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCc----------------------------------cceeccCCcCc------EEE
Confidence 9 678999999999999999976321 11111 22111 112
Q ss_pred eeec--CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 319 PEYS--TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 319 ~~~s--~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..++ +++.+|++|+.|+.|++||+++++++.++.+|...|.+++|+|++++|++++.||.|++||+.+.+.
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 2344 4788999999999999999999999999999999999999999999999999999999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=310.72 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred cceeeEEecCceeEeeccc------eE-EEEee--ecCC----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 015301 3 VGREVNYSGRGRFSAADSC------HV-LSRYL--PVNG----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNV 69 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~------~~-~~~~~--~~~~----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~ 69 (409)
++++++|||||+++++++. .. ++.+. .... .....+|...|++++|+|+++ +++++.||+|+|||+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEI 122 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeec
Confidence 3679999999999998764 11 22211 1111 124568999999999999986 556778999999999
Q ss_pred CCCeeeee-eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 70 DKNWKIQK-DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.+++.... .....+|...|.+++|+|++++|++++.|+.|++||+.+++..... ..|...|.++
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---------------~~h~~~v~~v 187 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---------------NAHSSEVNCV 187 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEE
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------cCCCCCEEEE
Confidence 88754332 2334568889999999999999999999999999999887643222 2455679999
Q ss_pred EEcCCCC-eEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 149 KFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 149 ~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
+|+|++. ++++++.|+.|++||+++++....+ ..|...+.+++|+|.++.+|++|+.|+.|++||++ .++...
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----~~~~~~ 263 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQ 263 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS----CGGGCE
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC----CCcEeE
Confidence 9999875 7889999999999999998877654 45778899999996667899999999999999976 667788
Q ss_pred eeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 226 VLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.+.+|...|.+++|+|++ ++|++++.|++|++||+++. +.+. ..
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~----------------------------------~~~~-~~ 308 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS----------------------------------EVFR-DL 308 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----------------------------------EEEE-EC
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----------------------------------cEeE-EC
Confidence 889999999999999987 57899999999999999872 2222 23
Q ss_pred cccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCce
Q 015301 305 GHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+|. ..+.+++|+| ++++|++++.||+|++|++.+...
T Consensus 309 ~H~------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 309 SHR------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CCS------SCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCC------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 454 2355678998 799999999999999999976533
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=305.14 Aligned_cols=303 Identities=14% Similarity=0.141 Sum_probs=225.5
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCC--C-ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNG--P-WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~-~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..+++|||||+++++++.+ .+|....... . ....+|...|.+++|+|+|++||+|+.|++|++|++..+. ...
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-~~~ 97 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-FEC 97 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-eEE
Confidence 4689999999999886644 4444332211 1 1236899999999999999999999999999999998763 223
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
.....+|...|.+++|+|++++|++++.|+.|++||+.++........ ...|...|.+++|+|++++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV------------LNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE------------ECCCCSCEEEEEECSSSSCE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE------------ecCcCCCeEEEEECCCCCEE
Confidence 334567888999999999999999999999999999987543211111 12455679999999999999
Q ss_pred EEEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----------Ccee
Q 015301 158 VAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----------GRAN 224 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~ 224 (409)
++++.|+.|++||..+++ ....+.+|...|.+++|+ |++++|++++.|++|++||.+..... ..++
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 999999999999998875 346788999999999999 89999999999999999996421111 1122
Q ss_pred eeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 225 GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
..+.+ |...|.+++|+|++..|++++.|+.|++|+............ .......
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-------------------------~~~~~~~ 299 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-------------------------SLTAHLH 299 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-------------------------EEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-------------------------EEEeeec
Confidence 33333 788999999999999999999999999999875321110000 0001112
Q ss_pred ecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
.+|. ..+.+++|+|++ .+||+|+.||.|++|++.+++.....
T Consensus 300 ~~h~------~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 300 QAHS------QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSSS------SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred cccc------CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 3443 345667899987 59999999999999999988766544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=305.60 Aligned_cols=277 Identities=18% Similarity=0.292 Sum_probs=229.7
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-eeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-IQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~ 79 (409)
+.+++|||||+++++++.+ .+|..........+..|...|.+++|+|++++|++|+.|+.|++|++.+... .....
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 137 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE
Confidence 5689999999998886654 4444444444557789999999999999999999999999999999987632 22233
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...+|...|.++.|++++. +++++.|+.|++||+.+++..... .+|...|.+++|+|++++|++
T Consensus 138 ~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 138 ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---------------TGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSEEEE
T ss_pred EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------------cCCCCceEEEEECCCCCEEEE
Confidence 4556778999999998875 889999999999999887643221 245668999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~ 237 (409)
|+.|+.|++||+++++.+..+.+|...|.+++|+ |++++|++++.||.|++||++ .......+. .+...|.++
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECC----CCcEEEEEccCCcccceEEE
Confidence 9999999999999999999999999999999999 899999999999999999976 444444433 233579999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+.+ ...+..+.+|.. .+.
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~~~~h~~------~v~ 316 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALK----------------------------------ADRAGVLAGHDN------RVS 316 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSS------CEE
T ss_pred EECCCCCEEEEECCCCeEEEEEccc----------------------------------CcEeeEeecCCC------cEE
Confidence 9999999999999999999999877 344566777763 345
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEE
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
+++|+|++.+|++|+.||.|+|||
T Consensus 317 ~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEcCCccEEecC
Confidence 678999999999999999999997
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=312.64 Aligned_cols=303 Identities=17% Similarity=0.223 Sum_probs=239.2
Q ss_pred eeecCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeeeeeec--ccccceEEEEEeCCC----CcEEEEEe
Q 015301 35 KVDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIET--KALRWTITDTSLSPD----QRFLVYAS 104 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~----~~~l~~~~ 104 (409)
...+|.++|++++|+|+ ...+++++.++.|++|++.++..+...... ..|...|.+++|+|+ +++|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 455666666779999999977555443322 235678999999998 67999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE---
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI--- 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~--- 180 (409)
.||.|++||+.+++...... +|..+|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYV---------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEE---------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCEEEEEEchhceEeeeec---------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 99999999998775432211 3455799999999 9999999999999999999999998888
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee----------------------------eeecccc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG----------------------------VLMGHLE 232 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~ 232 (409)
..|...|.+++|+ +++++|++++.||.|++||++. ..... ....|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINS----KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCS----HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCC----CccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999999 7999999999999999999862 22222 2223889
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.|.+++|+ ++++++++.|+.|++||+++........... ......+..+..|.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~----- 285 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS--------------------ESNVTILGRFDYSQ----- 285 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT--------------------CCCEEEEEEEECSS-----
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC--------------------CcchheeccccccC-----
Confidence 99999998 7799999999999999998754322111000 00012234444444
Q ss_pred eEEEEeeeecCC--CCEEEEEeCCCeEEEEEccCCc----eEEEeccC--CcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 313 IRCYFSPEYSTA--QKYIYTGSSDNSVYIYDLVSGA----QVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 313 ~~~~~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+..++|+|+ +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+
T Consensus 286 -~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 286 -CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 23455678888 9999999999999999999875 44577777 789999999999999999999999999998
Q ss_pred C
Q 015301 385 P 385 (409)
Q Consensus 385 ~ 385 (409)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=325.79 Aligned_cols=362 Identities=16% Similarity=0.163 Sum_probs=271.5
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeec----CCCceeecCCCC-eEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe-
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPV----NGPWKVDGMNSR-VYTSQFSN--DGSFFVAASQESNIKVYNVDKNW- 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~----~~~~~l~~h~~~-v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~- 73 (409)
..+++|||||++++..... .++..... .....+.+|.+. |++++|+| ++++||+++.||.|++||+.++.
T Consensus 21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 5689999999987765433 44444433 455688999999 99999999 99999999999999999997540
Q ss_pred ----eeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 ----KIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
..........|...|.+++|+|++++|++++.+ +.|++||.. +.... ...|...|
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~~~---------------~~~~~~~v 163 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGE---------------VSGHSQRI 163 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEEE---------------CCSCSSCE
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Cccee---------------eecCCccE
Confidence 111222344567799999999999999999987 789999832 21111 12456689
Q ss_pred EEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCCCC---CeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccC
Q 015301 146 FSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 146 ~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++|+ ++ +++|++++.||.|++||++ .
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~ 238 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----S 238 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----T
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----C
Confidence 9999999998 799999999999999999999999999999 99999999 67 9999999999999999975 6
Q ss_pred Cceeeee-e---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc-------cccc------------
Q 015301 221 GRANGVL-M---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL-------RDYD------------ 277 (409)
Q Consensus 221 ~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~------------ 277 (409)
++....+ . .|...|.+++|+ ++++|++++.|+.|++||+++........... ....
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC
Confidence 6777777 5 899999999999 99999999999999999998755433221110 0000
Q ss_pred ------cccc-------------------------------------------------cccccccceecccc-------
Q 015301 278 ------WDYR-------------------------------------------------WMEYPSYARRLKHP------- 295 (409)
Q Consensus 278 ------~~~~-------------------------------------------------~~~~~~~~~~~~~~------- 295 (409)
|+.. .+.+......+...
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKV 397 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEE
Confidence 0000 00000000000000
Q ss_pred --------------------------------------C-----------------------------ccceeeeeccc-
Q 015301 296 --------------------------------------H-----------------------------DQSLATYKGHS- 307 (409)
Q Consensus 296 --------------------------------------~-----------------------------~~~~~~~~~~~- 307 (409)
. ...+..+....
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc
Confidence 0 11111111100
Q ss_pred -----ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-CCcceeeeEEec----------CcCeEE
Q 015301 308 -----VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-HNAPVRDCCWHP----------IYPMLI 371 (409)
Q Consensus 308 -----~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~l~ 371 (409)
........+.+++|+|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+| ++++|+
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence 0001122356778999999999999999999999999999999988 999999999999 999999
Q ss_pred eecCCCeEEEEecCCCc
Q 015301 372 SSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 372 s~~~dg~i~iw~~~~~~ 388 (409)
+++.||.|++||+....
T Consensus 558 ~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp EEETTSCEEEEESSCTT
T ss_pred EEcCCCcEEEEECCCCc
Confidence 99999999999998763
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=314.14 Aligned_cols=319 Identities=12% Similarity=0.120 Sum_probs=248.8
Q ss_pred eeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++|||||++++++.. ..++..........+.+| ..+....|+|++++|++++.||.|++||+.++.... ..
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~ 135 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---ID 135 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ET
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ec
Confidence 36899999998887553 344544444444555666 455566889999999999999999999999774433 24
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
..|...|.+++|+|++++|++++.|+.|++||+.+++..... .+|...|.+++|+|++++|++++
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---------------IGHRATVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE---------------ECCSSCEEEEEEETTTTEEEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------cCCCCcEEEEEEcCCCCEEEEEc
Confidence 567789999999999999999999999999999877643221 13556899999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcC---CCCCeEEEE---------------------EeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 162 SDNFIYVYDLQANKCSLRIPA---HKSDVNTVC---------------------FADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
.|+.|++||+++++.+..+.. |...+.+++ |+ +++++|++++.||.|++||++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~-- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF-- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT--
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC--
Confidence 999999999999998888864 444455554 45 688999999999999999986
Q ss_pred ccCCceeeee-eccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecccc
Q 015301 218 ISKGRANGVL-MGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295 (409)
Q Consensus 218 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (409)
.......+ ..|...|.+++|+|++. +|++++.||.|++||+++..
T Consensus 278 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------------------------- 324 (420)
T 3vl1_A 278 --SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------------------------- 324 (420)
T ss_dssp --TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------------------------
T ss_pred --CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-------------------------------
Confidence 44444443 45888999999999999 99999999999999998732
Q ss_pred CccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC---------ceEEEeccCCcceeeeEEecC
Q 015301 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---------AQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+..+..+... .+... +.+++++|++++.||.|++|++... .....+..|...|.+++|+|+
T Consensus 325 --~~~~~~~~~~~~-----~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 325 --CPVGEFLINEGT-----PINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp --SCSEEEEESTTS-----CEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred --CchhhhhccCCC-----CceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 223444443211 11222 3346889999999999999998773 223345678899999999999
Q ss_pred cC---eEEeecCCCeEEEEecCC
Q 015301 367 YP---MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 367 ~~---~l~s~~~dg~i~iw~~~~ 386 (409)
++ .|++++.+|.+.+|++++
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCcceEEEEcCCceEEEEeccC
Confidence 99 777778899999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=308.24 Aligned_cols=288 Identities=20% Similarity=0.278 Sum_probs=224.7
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCCceeecC------------------CCCeEEEEECCCCCEEEEEeCCCc
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPWKVDGM------------------NSRVYTSQFSNDGSFFVAASQESN 63 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~~l~~h------------------~~~v~~~~~s~~~~~l~t~~~d~~ 63 (409)
..+++|||||++++++... .++..........+.+| ...|++++|+|+|++||+|+.|++
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 4689999999999886533 22322222222233333 235999999999999999999999
Q ss_pred EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 64 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
|++||++++..... ..+|...|.+++|+|++++|++++.|+.|++||+.+++...... +..
T Consensus 147 i~iwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----------------~~~ 207 (393)
T 1erj_A 147 IRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----------------IED 207 (393)
T ss_dssp EEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CSS
T ss_pred EEEEECCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----------------cCC
Confidence 99999998855443 45677799999999999999999999999999998876532221 122
Q ss_pred eeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE-------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 144 GIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.+++|+| ++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+ +++.+|++++.||.|++||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECC
Confidence 589999999 8999999999999999999999877766 5799999999999 899999999999999999986
Q ss_pred cccc--------CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 216 CFIS--------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 216 ~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.... .......+.+|...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~------------------------- 341 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------------------- 341 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------
Confidence 3211 1334566788999999999999999999999999999999987
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+..+..+.+|..............++|++++|++|+.||.|+||++...
T Consensus 342 ---------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 ---------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ---------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ---------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4556677777643332222112235568999999999999999998654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=306.74 Aligned_cols=296 Identities=13% Similarity=0.188 Sum_probs=234.1
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCC
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICA 107 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg 107 (409)
.+.+|.+.|++++|+|+++.+ ++++. |+.|++|++.++...... ..+|...|.+++|+|+ +++|++++.||
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 557899999999999999655 56655 899999999987543322 2246678999999998 69999999999
Q ss_pred EEEEEEcCCCc-cccccceeceeeeeeeecCCCCcceeeEEEE------EcCCCCeEEEEEecCeEEEEECCCCe-eeeE
Q 015301 108 IVNIVDVGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVK------FSTDGQELVAAGSDNFIYVYDLQANK-CSLR 179 (409)
Q Consensus 108 ~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~ 179 (409)
.|++||+.+++ ..... .+|...|.+++ |+|++++|++++.|+.|++||+.+++ .+..
T Consensus 91 ~i~iwd~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV---------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CEEEECTTSCSSCSEEE---------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred eEEEEeCCCCCccEEEE---------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 99999998775 21111 13555799995 46899999999999999999999887 6777
Q ss_pred EcCCCC----CeEEEE----EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC---CCCeEEE
Q 015301 180 IPAHKS----DVNTVC----FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR---DGRYFIS 248 (409)
Q Consensus 180 ~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 248 (409)
+..|.. .+.+++ |+ +++++|++++.||.|++||++ .... .....|...|.+++|+| ++.+|++
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred ccccCCCCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 765554 899998 55 789999999999999999975 4443 44467889999999999 9999999
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-E
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-Y 327 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 327 (409)
++.||.|++||+++....... ....+.+|. ..+.+++|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~-----------------------------~~~~~~~~~------~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGF-----------------------------ASVSEKAHK------STVWQVRHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEE-----------------------------EEEEEECCS------SCEEEEEEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccce-----------------------------eeeccCCCc------CCEEEEEECCCCCcE
Confidence 999999999999873221110 011122443 3455678999998 8
Q ss_pred EEEEeCCCeEEEEEccCC-------------------ceEEEeccCCcceeeeEEecCcCeEE-eecCCCeEEEEecCCC
Q 015301 328 IYTGSSDNSVYIYDLVSG-------------------AQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIPGI 387 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~ 387 (409)
|++++.||.|++||+.++ +.+..+.+|...|++++|+|++++|+ +++.||.|++||+.+.
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999999854 46778889999999999999999888 8999999999999865
Q ss_pred c
Q 015301 388 G 388 (409)
Q Consensus 388 ~ 388 (409)
.
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=308.70 Aligned_cols=314 Identities=16% Similarity=0.249 Sum_probs=242.1
Q ss_pred EeeecCCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeee----------cccccceEEEEEeC
Q 015301 26 RYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIE----------TKALRWTITDTSLS 94 (409)
Q Consensus 26 ~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~----------~~~~~~~v~~~~~s 94 (409)
.+........+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........ ...|...|.+++|+
T Consensus 29 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 29 GLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp TEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred ccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc
Confidence 3334455567889999999999999 999999999999999999998744333221 12477899999999
Q ss_pred C-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEecCeEEEEE
Q 015301 95 P-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYD 170 (409)
Q Consensus 95 ~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d 170 (409)
| ++.+|++++.||.|++||+.+++....... ...+.++.|++. +.++++++.++.|++||
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF----------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEEEEC----------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCccceeccC----------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 9 788999999999999999998765433321 225888999884 45999999999999999
Q ss_pred CCCCeeeeEEcCCCCCeEEEEEeCCCCc-EEEEeeCCCeEEEeccccccc------------CCceeeeeeccccceeEE
Q 015301 171 LQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFIS------------KGRANGVLMGHLEGITFI 237 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~v~~~ 237 (409)
+.+++.+..+..|...|.+++|+ +++. +|++++.||.|++||++.... ..........|...|.++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999999 5555 799999999999999863210 011112225788999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+++......... +..........+
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 297 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----------------------------------KVCNNSKKGLKF 297 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----------------------------------CCCCCCSSCCCC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccc----------------------------------ccccccccccee
Confidence 9999999999999999999999988543221110 000000000011
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
... ...+..+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|++...+..+
T Consensus 298 ~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 298 TVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 111 1234567777889999999999999999999999999999999999999999999999999998876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=307.63 Aligned_cols=299 Identities=13% Similarity=0.097 Sum_probs=222.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------cEEEEEcCCCeee-------eeeeecccccceEEEEEeCCCCcEEEEE--
Q 015301 40 NSRVYTSQFSNDGSFFVAASQES-------NIKVYNVDKNWKI-------QKDIETKALRWTITDTSLSPDQRFLVYA-- 103 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~-------~i~vw~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~-- 103 (409)
.-||+|++|+|||++|++|+.+. .|++|+++..... .....+..|...|.+++++ ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999997543 5999998765321 1223445666677777764 4566655
Q ss_pred ---------ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEECC
Q 015301 104 ---------SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQ 172 (409)
Q Consensus 104 ---------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~ 172 (409)
+.|+.+++|++........... ...+ .....+...+.+++|+|||+++++++ .|+.|++||++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-----SVDF-DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-----EECS-SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEee-----eece-eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 3577899999876543211110 0000 01112334588999999999987665 58999999999
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+++.+..+. |...|.+++|+ |+++++++++.++.+.+|+. .+.. ......|...|.+++|+|+++++++++
T Consensus 166 ~~~~~~~~~-~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 166 DLTEKFEIE-TRGEVKDLHFS-TDGKVVAYITGSSLEVISTV-----TGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp TTEEEEEEE-CSSCCCEEEEC-TTSSEEEEECSSCEEEEETT-----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEeC-CCCceEEEEEc-cCCceEEeccceeEEEEEec-----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999988886 77889999999 89999999986665544443 3332 234566888999999999999999999
Q ss_pred CCC----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 251 KDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 251 ~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
.|+ .+++|++....... .....+.+|. ..+.+++|+|+|+
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~------~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRF------KGITSMDVDMKGE 282 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSC------SCEEEEEECTTSC
T ss_pred cCCcceeEEeecccccceecc------------------------------eeeeeecCCC------CCeEeEEECCCCC
Confidence 887 68888876522110 1122333443 3356778999999
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+||+|+.|+.|+|||+.+++++.++ ++|..+|++++|+||+++|+|+|.|++|+||+++....
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 9999999999999999999999875 78999999999999999999999999999999976443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=333.59 Aligned_cols=351 Identities=9% Similarity=0.091 Sum_probs=243.2
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+.+++|||||+++++++.+....++...... ....|..+|.+++|+| |++|++++.|++|++||+.+++.+....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 36799999999999987755433333333222 2235889999999999 8899999999999999999886655432
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc------------cceeceeeeeeeecC-----------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL------------ANVTEIHKGLDFSAD----------- 137 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~------------~~~~~~~~~~~~~~~----------- 137 (409)
|...|++++|+|++++|++|+.||.|++||+.+++.... .........+.|.+.
T Consensus 97 ---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 97 ---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp ---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred ---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 445899999999999999999999999999988764210 000001111122211
Q ss_pred ---------------------------------CCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--E--
Q 015301 138 ---------------------------------GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--I-- 180 (409)
Q Consensus 138 ---------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~-- 180 (409)
...|...|.+++|+|+|++|++++.|+.|++||+++++++.. +
T Consensus 174 g~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 174 VTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp CEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred CcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 012346799999999999999999999999999999887653 2
Q ss_pred -cC-------------CCCCeEEEEEeC---CC-CcEEEEeeCC-----CeEEEecccc---------------------
Q 015301 181 -PA-------------HKSDVNTVCFAD---ET-GHLIFSGSDD-----SLCKVWDRRC--------------------- 216 (409)
Q Consensus 181 -~~-------------~~~~v~~~~~~~---~~-~~~l~~~~~d-----g~i~iwd~~~--------------------- 216 (409)
.. |...|.+++|++ |+ +.+|++|+.| ..+.+|++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 11 345799999963 22 2456666544 2455555210
Q ss_pred ---c-------------------------------------------ccCCcee--------------------------
Q 015301 217 ---F-------------------------------------------ISKGRAN-------------------------- 224 (409)
Q Consensus 217 ---~-------------------------------------------~~~~~~~-------------------------- 224 (409)
. ...+...
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 0 0000000
Q ss_pred ---------------eeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 225 ---------------GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 225 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
..+.+|...+.+++|+|++++|++++.|++|++||+......... .+..+
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~-----~~~~~---------- 478 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA-----SFEVN---------- 478 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB-----CEEEE----------
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCc-----eEEee----------
Confidence 001223333444556789999999999999999999874211000 00000
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc-----------------------
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----------------------- 346 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~----------------------- 346 (409)
+ .+.+ -.+|. ..+.+++|+|++++||+|+.||+|+|||+.+++
T Consensus 479 --l----~~~~--~~~h~------~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 479 --L----SRTL--NKAKE------LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp --H----HHHT--TCSSS------CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred --c----hhhc--CCCCC------CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 0 0000 01332 346678999999999999999999999998762
Q ss_pred ----------------------eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 ----------------------QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
++..+.+|.+.|++++||||| +||+|+.|++|++||+.+..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 467888999999999999999 99999999999999987643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=352.82 Aligned_cols=372 Identities=17% Similarity=0.188 Sum_probs=287.2
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
..+++|||||+++++++. ..+|+.........+.+|...|.+++|+| ++.++++|+.|+.|++||+.++.....
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~- 738 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT- 738 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE-
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe-
Confidence 578999999999888654 34555444445567889999999999999 556899999999999999998865544
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceec--------------eeeeeeeecC-------
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTE--------------IHKGLDFSAD------- 137 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~------- 137 (409)
..+|...|.+++|+|++++|++++.||.|++||+.+++......... ......+.+.
T Consensus 739 --~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 739 --MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp --ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred --ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 34677799999999999999999999999999998765432221110 0001111111
Q ss_pred -------------------CCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 138 -------------------GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 138 -------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
..+|...|.+++|+|+++++++++.++.|++||+.++..+..+.+|...|.+++|+ +++.
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~ 895 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGS 895 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCC
Confidence 12567789999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEeeCCCeEEEeccccc-------------------------------------------------------------
Q 015301 199 LIFSGSDDSLCKVWDRRCF------------------------------------------------------------- 217 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~------------------------------------------------------------- 217 (409)
.|++++.||.|++||++..
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 9999999999999996421
Q ss_pred --------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 218 --------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 218 --------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
...+.....+.+|...|.+++|+|++++|++++.||.|++||+.+......... ......+
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~v~~~ 1050 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH-----QETVKDF 1050 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC-----SSCEEEE
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC-----CCcEEEE
Confidence 001223344557888999999999999999999999999999988654322111 1111111
Q ss_pred cccccc-----------eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 284 EYPSYA-----------RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 284 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.+.+.. .......+..+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ------GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTTTCCCEEEECCS------SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred EEcCCCcEEEEECCCcEEEEECCCCceeEEEcccC------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence 111111 122223344445555554 234567899999999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|...|++++|+|++++|++++.||.|++||+.++...
T Consensus 1125 ~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 99999999999999999999999999999999876643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=318.99 Aligned_cols=294 Identities=15% Similarity=0.093 Sum_probs=218.5
Q ss_pred eeecCCCCeEEEEECCC------CCEEEEEeCCCcEEEEEcCCCeee--------eeeeecccccceEEEEEeCCCCcEE
Q 015301 35 KVDGMNSRVYTSQFSND------GSFFVAASQESNIKVYNVDKNWKI--------QKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~------~~~l~t~~~d~~i~vw~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
.+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+..+... .......+|...|++++|+|++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 46788999999999997 579999999999999999876321 0112345677899999999864 89
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE--EEcCCC-CeEEEEEecCeEEEEECCCCeee
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV--KFSTDG-QELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
++|+.||+|++||+.++..... .. ..|...|.++ +|+|++ .+|++++.|++|++||+++++..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~--~~------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSF--YD------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSE--EE------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EEEeCCCEEEEEECCCCCCceE--Ee------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 9999999999999986532110 00 1456689999 578887 89999999999999999998877
Q ss_pred eEEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 178 LRIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+.+|.. .|.+++|+ |++..+++++.|++|++||++ .......+.+|.+.|++++|+|++++|++|+.||+|
T Consensus 347 ~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred cccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 77766653 58899999 788899999999999999976 566667788999999999999999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+... .+...+.... ......++.++|+|+++.+.. ..
T Consensus 422 ~lwd~~~~-----------------------------------~~~~~~~~~~-~~~~~~v~~v~~sp~g~~~~~-~~-- 462 (524)
T 2j04_B 422 IITNAARR-----------------------------------LLHGIKNSSA-TQKSLRLWKWDYSIKDDKYRI-DS-- 462 (524)
T ss_dssp ECCBSCSS-----------------------------------TTTCC-------CCCCEEEECBCCSSSCEEEE-CC--
T ss_pred EEEechHh-----------------------------------hccccccCcc-ceeeeEEEEeccCCCCCeEEc-cC--
Confidence 99997541 1111110000 000123467789999985532 22
Q ss_pred eEEEEEcc-CCceEEEeccCCcceeeeEEecCcC---eEEeecCCCeEEEEecCCC
Q 015301 336 SVYIYDLV-SGAQVAKLDFHNAPVRDCCWHPIYP---MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 336 ~v~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 387 (409)
.+.+|+.. ++..+..+.+|...|.+++|+|+++ +|++|+.||.|+||++...
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 23444443 5777888999999999999999965 9999999999999998753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=303.74 Aligned_cols=286 Identities=16% Similarity=0.195 Sum_probs=233.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.++.|+||++ ++||+|. |++|+|||..++... ......+|...|++++|+|+|++|++|+.||.|++||+.+++...
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 5787775 899999999998544 445566777789999999999999999999999999998876532
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.. .+|...+.++++ ++..|++|+.|+.+++||.... ..+..+.+|...+..+.++ +++.++
T Consensus 184 ~~---------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l 245 (420)
T 4gga_A 184 NM---------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHL 245 (420)
T ss_dssp EE---------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEE
T ss_pred EE---------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCee
Confidence 22 135557888777 5678999999999999998764 4456788999999999999 899999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-eEEE--EeCCCcEEEeeCCCCcccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFIS--NGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
++++.|+.+++|+.+..............|...|.+++|+|.+. .+++ |+.|+.|++||+++.
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-------------- 311 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-------------- 311 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT--------------
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc--------------
Confidence 99999999999998643333445667778999999999999765 4444 457999999999873
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--CCCeEEEEEccCCceEEEeccCC
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
..+..+..+.. +.+..++|+++.+++++ .|+.|+|||+.+++++.++.+|.
T Consensus 312 --------------------~~~~~~~~~~~-------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 312 --------------------ACLSAVDAHSQ-------VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp --------------------EEEEEEECSSC-------EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred --------------------ccceeeccccc-------eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence 33444444432 23456788898888765 68999999999999999999999
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.|++++|+||+++|+||+.||+|++||+.+...
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999999999999999999999999976543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=345.22 Aligned_cols=359 Identities=16% Similarity=0.169 Sum_probs=275.9
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|||||+++++++. ..+|..........+.+|.+.|.+++|+|+|++||+++.|++|++||+.++..+..
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--- 694 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT--- 694 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE---
Confidence 468999999999888654 34555544455568889999999999999999999999999999999999866554
Q ss_pred cccccceEEEEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 81 TKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
..+|...|.+++|+| ++.++++++.|+.|++||+.+++..... .+|...|.+++|+|++++++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---------------FGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE---------------CCCSSCEEEEEECSSTTEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee---------------cCCCCCEEEEEEecCCCEEE
Confidence 345677999999999 5568999999999999999887643221 14566899999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEE-------------------------------------------------------cCC
Q 015301 159 AAGSDNFIYVYDLQANKCSLRI-------------------------------------------------------PAH 183 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~-------------------------------------------------------~~~ 183 (409)
+++.||.|++||+.+++....+ .+|
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 9999999999998776543322 267
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...|.+++|+ +++.++++++.||.|++||+. .+.....+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 840 ~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 840 HSTIQYCDFS-PYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSCCCEEEEC-SSTTEEEEECSSSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred CCceEEEEEc-CCCCEEEEEeCCCeEEEEEcC----CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 8889999999 899999999999999999965 77888888999999999999999999999999999999998753
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccc--eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.......... .....................+....+... .......+.+.+++|+++++++|+.+|.|++||
T Consensus 915 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 915 CKNSAIVLKQ-----EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp HSCCSSSEEE-----EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred ceeeeecccc-----eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 2221110000 000000000000001111111111111110 001112345678999999999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++...
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999999999999999999999999999999999999876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=299.80 Aligned_cols=278 Identities=19% Similarity=0.284 Sum_probs=228.1
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee---eee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK---IQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~ 77 (409)
+.+++|+||++++++++.+ .+|...+......+..|...|.+++|+|+|++|++|+.|+.+++|++..... ...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccc
Confidence 5789999999998887655 3444434444557788999999999999999999999999999999865311 111
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 155 (409)
......|...|.+++|+|++..|++++.|+.|++||+.+++..... .+|...|.+++|+| +++
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---------------HGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECCCSSCC
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------------cCCCCCeEEEEEEeCCCCC
Confidence 2233457779999999999999999999999999999887643221 13555799999987 568
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEG 233 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~ 233 (409)
+|++|+.|+.|++||+++++++..+.+|...|.+++|+ |++++|++++.|++|++||++ .......+.. +...
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLR----ADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCcccc
Confidence 99999999999999999999999999999999999999 889999999999999999986 3444443332 3357
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.+++|+|++++|++++.|+.|++||+.+ +..+..+.+|.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~l~~h~------ 326 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLK----------------------------------GSRVSILFGHE------ 326 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCS------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCC----------------------------------CceEEEEECCC------
Confidence 89999999999999999999999999977 34455666666
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
..+.+++|+|++++|++|+.||.|++|+
T Consensus 327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3455678999999999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=314.06 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=241.8
Q ss_pred CCCeEEEEECCCCC-EEEEE----------eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 40 NSRVYTSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 40 ~~~v~~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
...|.+++|+|+|+ +|+++ +.|+.|++|++.++..... .....|...|.+++|+|++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 35689999999997 99999 8899999999988743222 222346678999999999999999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCe------eeeE--
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------CSLR-- 179 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~------~~~~-- 179 (409)
|++||+.+...... .......|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 91 v~vw~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 91 LELYSTNEANNAIN-----------SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp EEEECCSSTTSCCC-----------EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred EEEeeccccccccc-----------chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 99999987321100 00011245668999999998 8999999999999999999876 3332
Q ss_pred -EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCC-CeEEEEeC
Q 015301 180 -IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDG-RYFISNGK 251 (409)
Q Consensus 180 -~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~ 251 (409)
...|...|.+++|+|..+.+|++++.||.|++||++ .......+..+ ...+.+++|+|++ .++++++.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 367999999999994448999999999999999976 56666666665 7889999999997 68999999
Q ss_pred CC---cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecC-CCC
Q 015301 252 DQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYST-AQK 326 (409)
Q Consensus 252 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-~~~ 326 (409)
|+ .|++||+++.. ..+..+. +|. ..+.+++|+| +++
T Consensus 236 d~~~~~i~~~d~~~~~---------------------------------~~~~~~~~~~~------~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 236 SDNDPSILIWDLRNAN---------------------------------TPLQTLNQGHQ------KGILSLDWCHQDEH 276 (416)
T ss_dssp CSSSCCCCEEETTSTT---------------------------------SCSBCCCSCCS------SCEEEEEECSSCSS
T ss_pred CCCCceEEEEeCCCCC---------------------------------CCcEEeecCcc------CceeEEEeCCCCCC
Confidence 98 99999998732 2233333 444 2345668888 899
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCc-CeEEeecCCCeEEEEecCCCcccC
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY-PMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.......
T Consensus 277 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999999999999999999999999999999999999999 799999999999999998766543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=312.24 Aligned_cols=298 Identities=12% Similarity=0.086 Sum_probs=223.7
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.....|.++|++++|+|+|++||+++.|+.|++|++.++. ........+|...|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3455678899999999999999999999999999998772 122334556888999999999999999999999999999
Q ss_pred cCCCc-cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe---eeeEEcC-CCCCeE
Q 015301 114 VGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPA-HKSDVN 188 (409)
Q Consensus 114 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~-~~~~v~ 188 (409)
+.+++ ...... ...|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.
T Consensus 84 ~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 84 KRPDGTWKQTLV-------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp -----CCCCEEE-------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred cCCCCceeeeeE-------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 98876 111111 12355689999999999999999999999999999887 3667777 999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccc--------------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFI--------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+++|+ +++++|++++.|+.|++||++... ..+.....+ +|...|.+++|+|++++|++++.||.
T Consensus 151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 99999 789999999999999999974211 123445555 89999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+++..... ..+..+.+|. ..+.+++|+|++++|++|+.+
T Consensus 229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 229 VTIAYPSAPEQPP------------------------------RALITVKLSQ------LPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EC-CEECSTTSCE------------------------------EECCCEECSS------SCEEEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCCcc------------------------------eeeEeecCCC------CceEEEEEcCCCCEEEEEcCC
Confidence 9999998743210 1144455555 234566889999999999877
Q ss_pred CeEEEEEccCCc--e-------------------------E---------EEe----------------ccCCcceeeeE
Q 015301 335 NSVYIYDLVSGA--Q-------------------------V---------AKL----------------DFHNAPVRDCC 362 (409)
Q Consensus 335 g~v~i~d~~~~~--~-------------------------~---------~~~----------------~~~~~~v~~~~ 362 (409)
+.+ +|+..... . . ..+ ..|...|++++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR 351 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence 766 66654211 0 0 011 13899999999
Q ss_pred EecCcC----eEEeecCCCeEEEEec
Q 015301 363 WHPIYP----MLISSSWDCNIVRWEI 384 (409)
Q Consensus 363 ~s~~~~----~l~s~~~dg~i~iw~~ 384 (409)
+.+... .|+|+|.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 766543 5999999999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=306.59 Aligned_cols=291 Identities=14% Similarity=0.166 Sum_probs=238.9
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEc----CCCee------eeeeee-cc------cccceEEEEEeCCC
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNV----DKNWK------IQKDIE-TK------ALRWTITDTSLSPD 96 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~----~~~~~------~~~~~~-~~------~~~~~v~~~~~s~~ 96 (409)
....|.+.|++++|+|+|+ +||+++.||.|++|++ .++.. ...... .. +|...|.+++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3345669999999999999 9999999999999999 77752 222111 11 25668999999999
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+++|++++.||.|++||. +++..... ..|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 120 ~~~l~~~~~dg~i~i~~~-~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK-TGALLNVL---------------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp SSEEEEEETTSCEEEEET-TSCEEEEE---------------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCeEEEEeC-CCCeeeec---------------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 999999999999999993 33221111 13455799999999999999999999999999999999
Q ss_pred eeEEcCCCCC---------------eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 177 SLRIPAHKSD---------------VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 177 ~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
+..+..+... +.+++|+ ++ ..+++++.+|.|++||++ .......+..|...|.+++|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQIT----EKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETT----CSSCSEEECCCSSCEEEEEEET
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcC----CCceeeeeccCCCceEEEEECC
Confidence 9888877776 9999999 54 568899999999999975 5677777888999999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++++|++++.|+.|++||+++. ..+..+..|. ..+.+++|
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~----------------------------------~~~~~~~~~~------~~i~~~~~ 297 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNG----------------------------------NSQNCFYGHS------QSIVSASW 297 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSB----------------------------------SCSEEECCCS------SCEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCC----------------------------------ccceEecCCC------ccEEEEEE
Confidence 9999999999999999999873 3344454444 23456678
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+....
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8988 99999999999999999999999999999999999999999999999999999999998655
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=317.95 Aligned_cols=326 Identities=16% Similarity=0.196 Sum_probs=239.7
Q ss_pred ceeeEEecCceeEeeccce-----EEEEeeecCCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH-----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..+++|+|||+++++.+.. .+..+-.......+.+|...|++++|+|+++ ++++++.|+.|++||+.++.....
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 198 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence 5789999999988876543 3333333344457889999999999999998 899999999999999988755444
Q ss_pred eeecccccc---eEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 78 DIETKALRW---TITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 78 ~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
...|.. .|.+++|+|+ +++|++++.||.|++||+.+++........ ...|...|.+++|+ +
T Consensus 199 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~-~ 263 (615)
T 1pgu_A 199 ---DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-----------QEPVQGGIFALSWL-D 263 (615)
T ss_dssp ---ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-----------TBCCCSCEEEEEES-S
T ss_pred ---ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc-----------ccccCCceEEEEEc-C
Confidence 345666 8999999999 999999999999999999887654333000 00122345555555 5
Q ss_pred CCeEEEEEecCeEEEEEC---------------------------------------------CCCeeeeEEcCCCCCeE
Q 015301 154 GQELVAAGSDNFIYVYDL---------------------------------------------QANKCSLRIPAHKSDVN 188 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~---------------------------------------------~~~~~~~~~~~~~~~v~ 188 (409)
+++|++++.|+.|++||+ .+++.+..+.+|...|.
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGIT 343 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEE
Confidence 555555555555555554 44444455556666665
Q ss_pred EEEEeC--------------------------------CCCcEEEEeeCCCeEEEeccccccc-----------------
Q 015301 189 TVCFAD--------------------------------ETGHLIFSGSDDSLCKVWDRRCFIS----------------- 219 (409)
Q Consensus 189 ~~~~~~--------------------------------~~~~~l~~~~~dg~i~iwd~~~~~~----------------- 219 (409)
+++| | +++..|++++.|+.+++||++....
T Consensus 344 ~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~ 422 (615)
T 1pgu_A 344 ALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 422 (615)
T ss_dssp EEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEE
Confidence 5555 2 1245666666666666666542100
Q ss_pred -----------------------------------------------------CCcee-eeeeccccceeEEEEcCCCCe
Q 015301 220 -----------------------------------------------------KGRAN-GVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 220 -----------------------------------------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~ 245 (409)
..... ..+..|...|.+++|+|++++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred EeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 00111 445568889999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecC-
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYST- 323 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~- 323 (409)
|++++.||.|++||+.+. ..+..+.+ |. ..+.+++|+|
T Consensus 503 l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~------~~v~~~~~sp~ 542 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRT------SKINAISWKPA 542 (615)
T ss_dssp EEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCS------SCEEEEEECCC
T ss_pred EEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCC------CceeEEEEcCc
Confidence 999999999999999873 33444444 43 3355668999
Q ss_pred ---------CCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 324 ---------AQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 324 ---------~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 78899999999999999999999 99999999999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=287.61 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=235.0
Q ss_pred EeeecCCCceeec--CCC--CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE
Q 015301 26 RYLPVNGPWKVDG--MNS--RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 26 ~~~~~~~~~~l~~--h~~--~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 101 (409)
+++|..+...|.. ... ..++|+||+++ +||+|. |++|+|||+++++.+. .+...+|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCEEE
Confidence 4556666566653 222 35789999986 777764 8999999999985544 445667778899999999999999
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEE
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRI 180 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~ 180 (409)
+|+.||.|++||+.+++...... +|...+.++ ++++..+++++.++.+.+|+.... ..+..+
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~---------------~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMT---------------SHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE---------------CCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEECCCcEEEeecCCceeEEEec---------------CccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 99999999999999886533221 233345554 456778999999999999998765 445667
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE---EEEeCCCcEEE
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF---ISNGKDQTTKL 257 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i 257 (409)
.+|...+..+.+. +++++|++++.||.|++||++..............+...|.++.++|++..+ ++++.++.|++
T Consensus 147 ~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 147 SGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred cCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 8899999999999 8899999999999999999874433344556666788899999999977644 35677899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--CCC
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDN 335 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg 335 (409)
||.+... ........ ..+....++|+++.+++++ .|+
T Consensus 226 wd~~~~~----------------------------------~~~~~~~~-------~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 226 WNVCSGA----------------------------------CLSAVDAH-------SQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp EETTTCC----------------------------------EEEEEECS-------SCEEEEEEETTTTEEEEEECTTTC
T ss_pred Eeccccc----------------------------------ccccccce-------eeeeeeeecccccceEEEEEcCCC
Confidence 9987732 11111111 1123446778888877654 799
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|++||+.+++++.++.+|.+.|++++|+|++++|+|++.||+|++||+.+.
T Consensus 265 ~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=299.44 Aligned_cols=287 Identities=20% Similarity=0.223 Sum_probs=231.1
Q ss_pred cCCCCe--EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 38 GMNSRV--YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 38 ~h~~~v--~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+|...+ .+++|++ ..+++++.|+.|++|++.++....... ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 676654 4466665 558888899999999999886544332 2266789999999999999999999999999998
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
+++..... ..|...|.+++| ++++|++++.||.|++||++ ....+..+.+|...|.+++|+
T Consensus 165 ~~~~~~~~---------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~- 226 (401)
T 4aez_A 165 SQTKLRTM---------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR- 226 (401)
T ss_dssp TCCEEEEE---------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-
T ss_pred CCeEEEEe---------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-
Confidence 77543221 135557999999 56799999999999999998 566677888999999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe-EEEEe--CCCcEEEeeCCCCcccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY-FISNG--KDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~ 271 (409)
+++++|++++.||.|++||++ .......+..|...|.+++|+|++.. +++++ .|+.|++||+++.
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-------- 294 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-------- 294 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC--------
T ss_pred CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC--------
Confidence 799999999999999999976 67777788889999999999997754 55544 6999999999873
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCCeEEEEEccCCceE-
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDNSVYIYDLVSGAQV- 348 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~- 348 (409)
..+..+..+. .+.+++|+|++++|++ |+.||.|++||+.+++..
T Consensus 295 --------------------------~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 295 --------------------------ARVNTVDAGS-------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp --------------------------CEEEEEECSS-------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred --------------------------CEEEEEeCCC-------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 3333443221 2456689999999999 448999999999986554
Q ss_pred -EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 349 -AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 349 -~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..+.+|...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 4467899999999999999999999999999999998876543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=287.01 Aligned_cols=282 Identities=12% Similarity=0.198 Sum_probs=222.5
Q ss_pred ceeeEEecCc-eeEeeccce---EEEEeeecC-----CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRG-RFSAADSCH---VLSRYLPVN-----GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~---~~~~~~~~~-----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
..+++|+|++ .++++++.+ .+|...... +...+.+|...|.+++|+|+|++|++|+.|++|++||+.+++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 5689999975 677765543 445443322 2347889999999999999999999999999999999999866
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD- 153 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 153 (409)
+.. ..+|...|.+++|+|++.+|++++.|+.|++||+........ .+|...|.+++|+|.
T Consensus 100 ~~~---~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~----------------~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 100 YQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL----------------LGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EEE---EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE----------------CCCSSCEEEEEECCC-
T ss_pred eEE---EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE----------------eccCCcEEEEEEccCC
Confidence 554 345777999999999999999999999999999964322111 245557999999985
Q ss_pred -----CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 154 -----GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 154 -----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+..+++++.|+.|++||+.+.+....+.+|...|.+++|+ |++++|++++.||.|++||++ ..+.+..+.
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~----~~~~~~~~~ 235 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLA----AKKAMYTLS 235 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC----CCcEEEEec
Confidence 4489999999999999999999999999999999999999 899999999999999999975 566666665
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
. ...|.+++|+|++.+|++++.+ .+++|++...... ..+..+..
T Consensus 236 ~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~----------------------------------~~~~~~~~ 279 (319)
T 3frx_A 236 A-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV----------------------------------DDLRPEFA 279 (319)
T ss_dssp C-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE----------------------------------EEECCCCT
T ss_pred C-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee----------------------------------eccCcccc
Confidence 4 4689999999999998887765 5999998763211 11111000
Q ss_pred --eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 309 --LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 309 --~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
.......+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 280 ~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 0001123456789999999999999999999999764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=325.96 Aligned_cols=372 Identities=8% Similarity=-0.025 Sum_probs=242.9
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCC--------------ceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEE
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGP--------------WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYN 68 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--------------~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~ 68 (409)
..+++|+|++.+++++.......++..... ..+.+|.++|++++|+|+ +..|++|+.||.| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 568999999999887654322222222211 234789999999999996 5789999999999 999
Q ss_pred cCCCeeeeeeeec---------------ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce--------
Q 015301 69 VDKNWKIQKDIET---------------KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV-------- 125 (409)
Q Consensus 69 ~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-------- 125 (409)
+.++......... ..|...|.+++|+|++++|++++.||.|++||+.+++.......
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~ 259 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP 259 (902)
T ss_dssp TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence 9988655443222 23456799999999999999999999999999988764321000
Q ss_pred -----------eceeeeeeeecC--------------CC-----------------------------------------
Q 015301 126 -----------TEIHKGLDFSAD--------------GD----------------------------------------- 139 (409)
Q Consensus 126 -----------~~~~~~~~~~~~--------------~~----------------------------------------- 139 (409)
......+.|.+. ..
T Consensus 260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (902)
T 2oaj_A 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL 339 (902)
T ss_dssp CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence 001111111100 00
Q ss_pred CcceeeEEEEEcC----------CCCeEEEEEecCeEEEEECCCCeeeeE-------EcCCCCCe---------------
Q 015301 140 EDEFGIFSVKFST----------DGQELVAAGSDNFIYVYDLQANKCSLR-------IPAHKSDV--------------- 187 (409)
Q Consensus 140 ~~~~~v~~~~~~~----------~~~~l~~~~~d~~i~v~d~~~~~~~~~-------~~~~~~~v--------------- 187 (409)
.+...|.++.+.+ +...+++++.|+.|++||+.++..... +..|...|
T Consensus 340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 1123344555543 233677778889999999877643221 22233344
Q ss_pred -------------------EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--e-----eccccceeEEEEcC
Q 015301 188 -------------------NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L-----MGHLEGITFIDSRR 241 (409)
Q Consensus 188 -------------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~~~~v~~~~~~~ 241 (409)
..++|+ +++++|++|+.|++|++||+............ + .+|...|.+++|+|
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp 498 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred HHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence 444556 68899999999999999997632110000011 1 17888999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCccccc---cccccccccccccccccccc-ceecccc-------Cccceeeeeccccee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTT---DNSRLRDYDWDYRWMEYPSY-ARRLKHP-------HDQSLATYKGHSVLR 310 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~ 310 (409)
++++|++++.||+|++||+.+...... .......+.+....+...+. ...+... ...++..+.+|.
T Consensus 499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~--- 575 (902)
T 2oaj_A 499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK--- 575 (902)
T ss_dssp TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS---
T ss_pred CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC---
Confidence 999999999999999999987532100 00000000000000000000 0000000 012345555555
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE-----Eec-cCCcceeeeEEe-----cCc---CeEEeecCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-----KLD-FHNAPVRDCCWH-----PIY---PMLISSSWD 376 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-----~~~-~~~~~v~~~~~s-----~~~---~~l~s~~~d 376 (409)
..+++++||||| +||+|+.|++|+|||++++..+. .+. +|...|++++|+ ||| ++|++++.|
T Consensus 576 ---~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 576 ---GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp ---CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred ---CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 456778899999 99999999999999998877654 233 889999999999 885 799999999
Q ss_pred CeEEEEec
Q 015301 377 CNIVRWEI 384 (409)
Q Consensus 377 g~i~iw~~ 384 (409)
|+|++||+
T Consensus 652 ~tv~~wd~ 659 (902)
T 2oaj_A 652 GEVITYKI 659 (902)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 99999999
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=304.14 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=229.2
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----ee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK----IQ 76 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~----~~ 76 (409)
..+++|||||+++++++.+ .+|+.........+.+|...|.+++|+|+|++||+|+.|+.+++|++.+... ..
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~ 148 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP 148 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc
Confidence 5789999999998887654 4444434444567889999999999999999999999999999999875421 11
Q ss_pred eeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CC
Q 015301 77 KDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DG 154 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 154 (409)
......+|...|.++.|+|+ +..|++|+.|+.|++||+.+++....... ....+|...|.+++|++ ++
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS----------EFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC----------CSSSSCCSCEEEEEECSSSC
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec----------ccCCCCccCeEEEEeecCCC
Confidence 12235578888999999997 45799999999999999998765332211 11135667899999987 88
Q ss_pred CeEEEEEecCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--
Q 015301 155 QELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+ |++++|++++.||+|++||++ .+..+..+..+.
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMR----TGHQLQVYNREPDR 293 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETT----TTEEEEEECCCCSS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECC----CCcEEEEecccccc
Confidence 999999999999999997 457788899999999999999 899999999999999999976 555555544332
Q ss_pred -----cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee---
Q 015301 232 -----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--- 303 (409)
Q Consensus 232 -----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 303 (409)
..|.+++|+|+|++|++++.||.|++||+...+ .+..+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----------------------------------~~~~~~~~ 339 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE----------------------------------MVLNLGTL 339 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC----------------------------------EEEEECCS
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc----------------------------------eEEEEecc
Confidence 348999999999999999999999999987632 22222
Q ss_pred -ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 304 -KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.+|. ..+.+++|+|+|++|++|+.||.|++|++...+
T Consensus 340 ~~~h~------~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 340 QNSHE------GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSCC------CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cCCCC------CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 3343 234566899999999999999999999987654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=291.54 Aligned_cols=291 Identities=18% Similarity=0.247 Sum_probs=240.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|.++|.+++|+|||++++++..++.+.+|.......... ...|...|.+++|+|++++|++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN---TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE---EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce---eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 557899999999999999988887777776554433322 335777999999999999999999 9999999998765
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~ 196 (409)
......... ...|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ ++
T Consensus 84 ~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 152 (337)
T 1gxr_A 84 NKSPVSQLD----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PD 152 (337)
T ss_dssp CCSCSEEEE----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TT
T ss_pred ceeeeeccc----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-CC
Confidence 432222111 11345579999999999999999999999999999887 566778899999999999 79
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+++|++++.||.|++||++ .......+..|...+.+++|+|++++|++++.||.|++||+++..
T Consensus 153 ~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------ 216 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------------ 216 (337)
T ss_dssp SSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------
T ss_pred CCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc------------
Confidence 9999999999999999975 677788888899999999999999999999999999999998732
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
.+..+.. . ..+.+++|+|++++|++++.++.|++||+.+++.. .+..|..
T Consensus 217 ----------------------~~~~~~~-~------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~ 266 (337)
T 1gxr_A 217 ----------------------QLQQHDF-T------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHES 266 (337)
T ss_dssp ----------------------EEEEEEC-S------SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSS
T ss_pred ----------------------eEeeecC-C------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCcc
Confidence 2222221 1 22456689999999999999999999999888764 6678999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.|.+++|+|++++|++++.||.|++|++..+...
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 9999999999999999999999999999876544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=292.49 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=237.4
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEEEEc
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDV 114 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~ 114 (409)
..+|.+.|++++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 348999999999999999999999999999999988752222233346777999999999999 9999999999999999
Q ss_pred -CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC---------CeeeeEEcCCC
Q 015301 115 -GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---------NKCSLRIPAHK 184 (409)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~ 184 (409)
.+++...... ..|...|.+++|+| +++|++++.|+.|++||+.+ ++++..+. |.
T Consensus 87 ~~~~~~~~~~~--------------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 87 IGSPSFQALTN--------------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp SSSSSEEECBS--------------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred ccCCceEeccc--------------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 7765411110 01555799999999 99999999999999999987 77666666 89
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..|.+++|+ +++ +++++.|+.|++||++.. ...........|...+.+++|+| +++++++++.||.+++|+++..
T Consensus 151 ~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 151 NKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLC-EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCEEEEEEC-SSE--EEEEESTTEEEEEESSCC-TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CceEEEEec-CCc--EEEEeCCCeEEEEECCcc-ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 999999999 554 999999999999998620 11223334556788999999999 9999999999999999999763
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeeccccee---eeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR---TLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
.... .......+..|.... .....+.+++|+|++++|++++.||.|++|
T Consensus 227 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 227 GDDY----------------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp CCST----------------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred Cccc----------------------------ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 1000 012233444443200 011245567899999999999999999999
Q ss_pred EccCCceEEEeccC-CcceeeeEEecCcCeEEeecCCCe-EEEEec
Q 015301 341 DLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSSWDCN-IVRWEI 384 (409)
Q Consensus 341 d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~ 384 (409)
|+.+++.+..+.+| ..+|++++ |++++|++++.||. .+.|..
T Consensus 279 d~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 279 NLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred cCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99999999999998 99999999 99999999999998 655554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=303.06 Aligned_cols=284 Identities=14% Similarity=0.191 Sum_probs=228.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..+++++|+|+|++|++++.|+.|++||+.++..... ...+ ..+....|+|++++|++++.||.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM---LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT---SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeE---EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 3455899999999999999999999999987643322 2222 34556678999999999999999999999876543
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
... ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|
T Consensus 133 ~~~---------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 196 (420)
T 3vl1_A 133 EID---------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV 196 (420)
T ss_dssp EET---------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred eec---------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence 221 2456689999999999999999999999999999999999999999999999999 889999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeec---cc---------------------cceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMG---HL---------------------EGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
++++.||.|++||++ .+.....+.. |. ..+.+++|+|++++|++++.||.|+
T Consensus 197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 999999999999976 5556655553 22 4445555688999999999999999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCC-EEEEEeCC
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQK-YIYTGSSD 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~d 334 (409)
+||+++.. .+..+. .|. ..+.+++|+|+++ +|++|+.|
T Consensus 273 i~d~~~~~----------------------------------~~~~~~~~~~------~~v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 273 VHNVFSKE----------------------------------QTIQLPSKFT------CSCNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEETTTCC----------------------------------EEEEECCTTS------SCEEEEEECSSCTTEEEEEETT
T ss_pred EEECCCCc----------------------------------eeEEcccccC------CCceeEEEeCCCCCEEEEEeCC
Confidence 99998732 222222 232 2345668999998 99999999
Q ss_pred CeEEEEEccCCce-EEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 335 NSVYIYDLVSGAQ-VAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 335 g~v~i~d~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|.|++||+++++. +..+.. |...|.++.| +++++|++++.||.|++|++.....
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999998754 677776 6677888855 5788999999999999999987543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=320.87 Aligned_cols=294 Identities=16% Similarity=0.209 Sum_probs=249.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
....+.+|.+.|++++|+|+|++||+++.||.|+|||+.++..+... ..|...|.+++|+|++++|++++.||.|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999999988665543 356679999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~ 190 (409)
||+.+++...... .|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.++
T Consensus 82 w~~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 82 FNYNTGEKVVDFE---------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EETTTCCEEEEEE---------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred EECCCCcEEEEEe---------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 9998876432221 34557999999999999999999999999999887 6677788999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+|+|.+++.|++++.||.|++||++ .......+..+. ..+..++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9994488999999999999999975 444455554444 8899999999 999999999999999999987
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+..+..+.+|. ..+..++|+|++++|++++.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHM------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCS------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCC------CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34455555554 2345667999999999999999999999999999
Q ss_pred EEEeccCCcceeeeEEecCcCe-EEeecCCCeEEEEecCCC
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPM-LISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~ 387 (409)
+..+..|...+.+++|+|+++. +++++.|+.+.+|++...
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 9999999999999999999873 344555778899998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=282.89 Aligned_cols=259 Identities=17% Similarity=0.197 Sum_probs=203.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++||+|+.|++|+||+++.... .......+|...|.+++|+|+ +++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 35779999999999999999999999999999999975421 122345678889999999874 899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCee--eeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v 187 (409)
||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|
T Consensus 82 Wd~~~~~~~~~~~~-------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 82 WKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EEBSSSCBCCCEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EEcCCCceEEEEEe-------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 99987643222111 135557999999997 88999999999999999987632 35677899999
Q ss_pred EEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC---CeEEEEeCC
Q 015301 188 NTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGKD 252 (409)
Q Consensus 188 ~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d 252 (409)
.+++|+|. ++++|++|+.|+.|++||++...........+.+|...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999942 257999999999999999862211122556788999999999999984 799999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee--ecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
++|++||++...... ....+ ..+. ..+++++|+|++++|++
T Consensus 229 ~~v~iWd~~~~~~~~-------------------------------~~~~~~~~~~~------~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFP------DVLWRASWSLSGNVLAL 271 (297)
T ss_dssp SCEEEEEESSTTSCC-------------------------------EEEESSSSCCS------SCEEEEEECSSSCCEEE
T ss_pred CcEEEEEeCCCCCcc-------------------------------ceeeeecccCC------CcEEEEEECCCCCEEEE
Confidence 999999987622100 00111 1222 34567789999999999
Q ss_pred EeCCCeEEEEEcc
Q 015301 331 GSSDNSVYIYDLV 343 (409)
Q Consensus 331 ~~~dg~v~i~d~~ 343 (409)
++.||.|++|+..
T Consensus 272 ~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 272 SGGDNKVTLWKEN 284 (297)
T ss_dssp EETTSCEEEEEEC
T ss_pred EcCCCcEEEEEEC
Confidence 9999999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=300.50 Aligned_cols=310 Identities=14% Similarity=0.225 Sum_probs=226.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--------eeeeeeccccc------------ceEEEEEeCCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALR------------WTITDTSLSPD 96 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~s~~ 96 (409)
..|.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|.+++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 35679999999999999999999999999999987642 11122344565 67999999999
Q ss_pred C--cEEEEEecCCEEEEEEcCCCccccccceece--------------------e-----eeeeeecCCCCcceeeEEEE
Q 015301 97 Q--RFLVYASICAIVNIVDVGSSARESLANVTEI--------------------H-----KGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 97 ~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~v~~~~ 149 (409)
+ ..|++++.|+.|++||+.++........... . ..........+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7999999999999999976543210000000 0 00000011246788999999
Q ss_pred EcCCCCeEEEEEecCeEEEEECCC-Ceeee-------EEcCCCCCeEEEEEeCCCC-cEEEEeeCCCeEEEecccccccC
Q 015301 150 FSTDGQELVAAGSDNFIYVYDLQA-NKCSL-------RIPAHKSDVNTVCFADETG-HLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 150 ~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
|+|++++|++| .|+.|++||+.+ ++... .+.+|...|.+++|+ |++ ++|++++.||.|++||++.....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99999999998 799999999984 33333 256899999999999 666 99999999999999998732111
Q ss_pred Cceeeeeecccc------------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 221 GRANGVLMGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 221 ~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
......+..|.. .|.+++|+|++++|++++. +.|++||+++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------------ 317 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------------ 317 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------------------
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------------------
Confidence 112566666765 8999999999999999998 999999998621
Q ss_pred ceeccccCccceeeeecccceee---------eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec-------
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRT---------LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------- 352 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------- 352 (409)
..+..+.+|..... .....+.++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 318 ---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~ 387 (447)
T 3dw8_B 318 ---------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNK 387 (447)
T ss_dssp ---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCC
T ss_pred ---------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccc
Confidence 22333333331111 00012346899999999999999999999999887753 22
Q ss_pred --------------------------cCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 353 --------------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 353 --------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
.+...|..++|+|++++|++++.++ +++|.-
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345788999999999999998775 777764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=285.69 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=219.3
Q ss_pred ceeeEE-----ec-CceeEeeccce---EEEEeeecC-------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 015301 4 GREVNY-----SG-RGRFSAADSCH---VLSRYLPVN-------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVY 67 (409)
Q Consensus 4 ~~~~~~-----s~-dg~~~~~~~~~---~~~~~~~~~-------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw 67 (409)
..+++| ++ |+.++++++.+ .+|...... ....+.+|...|++++|+|++.+|++++.|++|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 467888 66 89888886643 455543221 124678999999999999999999999999999999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
|+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++||+........ .....|...|.+
T Consensus 104 d~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------~~~~~~~~~v~~ 167 (343)
T 2xzm_R 104 DLRTGTTYKR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS-------------AEKENHSDWVSC 167 (343)
T ss_dssp ETTSSCEEEE---EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC-------------CTTTSCSSCEEE
T ss_pred ECCCCcEEEE---EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee-------------ecccCCCceeee
Confidence 9998865544 345777999999999999999999999999999974321111 111245667999
Q ss_pred EEEcCCC----------CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 148 VKFSTDG----------QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 148 ~~~~~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
++|+|++ .+|++++.|+.|++|| .+.+....+.+|...|.+++|+ |++++|++|+.||.|++||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~- 244 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN- 244 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSC-
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCC-
Confidence 9999986 7899999999999999 4567777888999999999999 8999999999999999999741
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
....... ..+...|.+++|+|++.++++ +.|+.|++||+.+........... ...
T Consensus 245 --~~~~~~~-~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~---------------------~~~ 299 (343)
T 2xzm_R 245 --LTYPQRE-FDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEA---------------------EPI 299 (343)
T ss_dssp --CSSCSEE-EECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCC---------------------CSG
T ss_pred --Cccccee-ecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeec---------------------Ccc
Confidence 2222222 235567999999999987764 567889999998743221000000 000
Q ss_pred cceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.......+|. ..+.+++|+|+|++|++|+.||.|++|++++++
T Consensus 300 ~~~~~~~~~~------~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 300 TKAEGQKGKN------PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp GGBTTBCCSC------CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhhhcCCC------CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 0001111232 234677899999999999999999999987653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=290.04 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=224.7
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-eeeeecccccceEEEEEeCC--CCcEEEEEecCCEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP--DQRFLVYASICAIV 109 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 109 (409)
...+.+|.+.|++++|+|++++||+++.||.|++||+.++... .......+|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876332 22334456788999999999 69999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCeeeeEEc------
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKCSLRIP------ 181 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 181 (409)
++||+.++.......... .......|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWN------KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EEEEECTTSCTTSSCSEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred EEEecCCCcccccccCcc------eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 999998765322111000 01111245668999999999 9999999999999999998876544332
Q ss_pred -------CCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeEEE
Q 015301 182 -------AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFIS 248 (409)
Q Consensus 182 -------~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 248 (409)
.|...+.+++|+|. ++.++++++.++.+.+|+.. .........+.+|...|.+++|+|++ ++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT--TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC--CCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 68889999999943 38999999999999888754 11223366778899999999999998 89999
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
++.||.|++||++.......... .. ...................
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~--~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEE----------------------------------SL--TNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------------------------------
T ss_pred EcCCCeEEEEeCCCCcCccccCC----------------------------------cc--cceeccCCCcccccccccc
Confidence 99999999999987432111100 00 0000000011111111122
Q ss_pred EEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 329 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 2333455677888888889999999999999999999999999999999999999987543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=283.80 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=204.8
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCC--Ccee-ec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNG--PWKV-DG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--- 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~~~l-~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--- 73 (409)
..+++|+|+ ++++++.+ .+|....... ...+ .+ |.+.|.+++|+|++++||+|+.|++|+||+++...
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence 467899988 66654433 3444322111 1234 34 99999999999999999999999999999986431
Q ss_pred -eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 74 -KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 74 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
.........+|...|.+++|+|++++|++++.|+.|++||+..... ..... ...+|...|.+++|+
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~------------~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS------------VLQEHSQDVKHVIWH 162 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE------------EECCCSSCEEEEEEC
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE------------EeccCCCceEEEEEC
Confidence 1122334567888999999999999999999999999999954321 11100 112456689999999
Q ss_pred CCCCeEEEEEecCeEEEEECCCC--eeeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCC----ce
Q 015301 152 TDGQELVAAGSDNFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKG----RA 223 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~ 223 (409)
|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+ ++ +.+|++++.|++|++||++...... ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 99999999999999999999776 5778889999999999999 55 6789999999999999986321111 23
Q ss_pred eeeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce-e
Q 015301 224 NGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-A 301 (409)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 301 (409)
...+.. |...|.+++|++++ +|++++.||.|++||..+... ... .
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~--------------------------------~~~~~ 288 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW--------------------------------KVFAK 288 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE--------------------------------EEEEE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce--------------------------------EEEec
Confidence 333444 88999999999755 899999999999999765210 011 1
Q ss_pred eeecccceeeeeEEEEeeeecC--CCCEEEEEeCCCeEEEEEccC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYST--AQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~v~i~d~~~ 344 (409)
...+|.. ..+..++|+| ++++|++|+.||.|++||+++
T Consensus 289 ~~~~h~~-----~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 289 RALCHGV-----YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ESCTTTT-----SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccc-----ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 1223331 0234557887 689999999999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=278.17 Aligned_cols=254 Identities=17% Similarity=0.211 Sum_probs=204.0
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 158 (409)
..+|...|.+++|+|++++||+|+.|+.|++||+.......... ..+|..+|.+++|++ ++++|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~-------------l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT-------------LTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE-------------ECCCSSCEEEEEECCGGGCSEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE-------------EccccCCeEEEEecCCCcCCEEE
Confidence 45688899999999999999999999999999997543211111 125677899999986 388999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+|+.|++|++||+++++ .+..+..|...|.+++|+ |+ +.+|++++.|+.|++||++.. .......+.+|...|
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~--~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGV 148 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSS--SCBCCEEEECCSSCE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCC--CceeeeeeecccCcc
Confidence 99999999999998874 556678899999999999 54 789999999999999998621 112245677899999
Q ss_pred eEEEEcCC-------------CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRRD-------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+|+ +++|++++.|+.|++||+++.... .....
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~------------------------------~~~~~ 198 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 198 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce------------------------------EEEEE
Confidence 99999997 579999999999999998763210 01234
Q ss_pred eeecccceeeeeEEEEeeeecCCC---CEEEEEeCCCeEEEEEccCCc---eEEEe--ccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGA---QVAKL--DFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~v~i~d~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|++ .+|++++.|++|+|||+.+.. ....+ ..|...|.+++|+|++++|+++
T Consensus 199 ~l~~H~------~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 199 TLEGHS------DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EecCCC------CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 566665 345667889984 899999999999999998753 22233 5678899999999999999999
Q ss_pred cCCCeEEEEecCC
Q 015301 374 SWDCNIVRWEIPG 386 (409)
Q Consensus 374 ~~dg~i~iw~~~~ 386 (409)
+.||.|++|+...
T Consensus 273 ~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 273 GGDNKVTLWKENL 285 (297)
T ss_dssp ETTSCEEEEEECT
T ss_pred cCCCcEEEEEECC
Confidence 9999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=289.06 Aligned_cols=304 Identities=12% Similarity=0.114 Sum_probs=236.8
Q ss_pred ecCCCceeecCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC-CeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 29 PVNGPWKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 29 ~~~~~~~l~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+......+.+|.+.|++++|+|+ |++|++|+.||.|++||+++ +..... ....|...|.+++|+|++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEEc
Confidence 34444577899999999999999 69999999999999999987 433322 2345777999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE--cCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.||.|++||+.+++..... .|...|.+++| +|++++|++++.|+.|++||+++++.+..+..
T Consensus 106 ~dg~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIA----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TTSEEEEEETTTTEEEEEE----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred CCCcEEEEEcCCCCceeec----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 9999999999887643211 24557999999 89999999999999999999999999888886
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe----EEEEeCCCcEEEe
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY----FISNGKDQTTKLW 258 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iw 258 (409)
+. .+.++.+. ...+++++.++.+++|+++.. ..........+...+.++.+.++... +++++.||.|++|
T Consensus 170 ~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 PE-RCYCADVI---YPMAVVATAERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CC-CceEEEec---CCeeEEEeCCCcEEEEEeccc--cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 64 67777776 347888899999999998621 11111222233445566666655544 9999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce------eeeeEEEEeeeecCCCCEEEEEe
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL------RTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|++..... ..+..+.+|... ......+.+++|+|++++|++++
T Consensus 244 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 244 YINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp ESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred ecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 99874210 123333333311 01112456778999999999999
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.||.|++||+.+++++..+.+|..+|++++|+|++++|++++.|+..+.|++...
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999999999999999999999999999999999999987777776543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=290.16 Aligned_cols=308 Identities=20% Similarity=0.272 Sum_probs=251.1
Q ss_pred EEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc
Q 015301 8 NYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (409)
Q Consensus 8 ~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~ 84 (409)
+++++|.++++++.. .+|..........+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.... ..+|
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h 198 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGH 198 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCC
Confidence 355667777765543 455544444456788999999999998 57999999999999999999865544 3467
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.++.|+ ++.|++++.||.|++||+.+++...... +|...|.+++| +++++++++.|+
T Consensus 199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM---------------GHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE---------------CCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc---------------CCcccEEEEEE--CCCEEEEEcCCC
Confidence 7799999995 5789999999999999998875432211 34557999999 788999999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.|++||+.+++.+..+.+|...|.+++| ++..+++++.||.|++||++ .+.....+.+|...+.++.++ ++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~ 330 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DN 330 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TT
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CC
Confidence 9999999999999999999999999998 57899999999999999975 677888888999999988874 67
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
++++++.||.|++||+++. ..+..+..+.... ..+.++++ +
T Consensus 331 ~l~~~~~dg~i~vwd~~~~----------------------------------~~~~~~~~~~~~~---~~v~~~~~--~ 371 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTG----------------------------------QCLQTLQGPNKHQ---SAVTCLQF--N 371 (445)
T ss_dssp EEEEEETTSCEEEEETTTC----------------------------------CEEEEECSTTSCS---SCEEEEEE--C
T ss_pred EEEEEeCCCeEEEEECCCC----------------------------------cEEEEEccCCCCC---CCEEEEEE--C
Confidence 9999999999999999873 3344444421111 12233445 4
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEe-----ccCCcceeeeEEecCcCeEEeecCCCe----EEEEecCCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYPMLISSSWDCN----IVRWEIPGI 387 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~iw~~~~~ 387 (409)
+++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++.+|++++.||. |.+||+...
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 689999999999999999999998888 478899999999999999999999997 999999764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=276.81 Aligned_cols=277 Identities=19% Similarity=0.317 Sum_probs=226.8
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.+++|+|||+++++++.. .+|..........+.+|...|.+++|+|++++|++++.|+.|++||++++..+..
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--- 102 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--- 102 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE---
Confidence 5789999999988876543 4444433444457889999999999999999999999999999999998865544
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
...|...|.+++|+|++++|++++.|+.|++||+.+++..... ..|..+|.+++|+|++++|+++
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---------------PAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---------------cCCCCcEEEEEEcCCCCEEEEE
Confidence 3456678999999999999999999999999999877543221 1345579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE---
Q 015301 161 GSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF--- 236 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--- 236 (409)
+.|+.|++||+.+++.+..+ ..+...+..++|+ +++++|++++.||.|++||++ .+.....+.+|......
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSSSCCCE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCceEEEEE
Confidence 99999999999999887766 4567789999999 899999999999999999975 66777777777655332
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
....+++.+|++++.||.|++||+++ ...+..+.+|.. .+
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~------~v 282 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQT----------------------------------KEIVQKLQGHTD------VV 282 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTT----------------------------------CCEEEEECCCSS------CE
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCC----------------------------------chhhhhhhccCC------cE
Confidence 23346788999999999999999987 345666777763 34
Q ss_pred EeeeecCCCCEEEEEe--CCCeEEEEEcc
Q 015301 317 FSPEYSTAQKYIYTGS--SDNSVYIYDLV 343 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~--~dg~v~i~d~~ 343 (409)
.+++++|++++|++++ .|+.|++|+..
T Consensus 283 ~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 283 ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 5668999999999987 69999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=292.60 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=238.1
Q ss_pred ceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+.+|.+.| .++.| ++++|++|+.||+|++||+.+++.+.. ..+|...|.+++|+|++ .|++|+.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4788999885 66666 568999999999999999998865544 44677899999999988 99999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEecCeEEEEECCCCee--------------
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDLQANKC-------------- 176 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~-------------- 176 (409)
|+.+++..... .+|...|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 189 d~~~~~~~~~~---------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 189 DIKKGCCTHVF---------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp ETTTTEEEEEE---------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred ECCCCcEEEEE---------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 99887643221 1355679999998 5788999999999999999987653
Q ss_pred ---------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 177 ---------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 177 ---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
+..+.+|...|.++. ++++++++++.||.|++||++ ....+..+.+|...|.+++|+|++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred eccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence 445678888888884 568899999999999999975 7788888899999999999999999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.||.|++||+++ +..+..+.+|... +..+.++ +++
T Consensus 327 sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~------v~~~~~~--~~~ 364 (464)
T 3v7d_B 327 SASMDTTIRIWDLEN----------------------------------GELMYTLQGHTAL------VGLLRLS--DKF 364 (464)
T ss_dssp EEETTSCEEEEETTT----------------------------------TEEEEEECCCSSC------EEEEEEC--SSE
T ss_pred EEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCc------EEEEEEc--CCE
Confidence 999999999999987 4556666666633 2333444 689
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|++++.||.|++||+.+++...... |...+..++|++++++|++++ ||.|++||+.+++..
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 9999999999999999988776664 677888899999999999998 899999999887654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=290.74 Aligned_cols=277 Identities=24% Similarity=0.330 Sum_probs=228.8
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
.+|...|+|++| ++++|++|+.||.|++||+.+++.... ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 356778999887 789999999999999999998865544 4467779999999 788999999999999999988
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee---eEEcCCCCCeEEEEEe
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAHKSDVNTVCFA 193 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~ 193 (409)
++..... ..|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|.
T Consensus 203 ~~~~~~~---------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 265 (435)
T 1p22_A 203 GEMLNTL---------------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 265 (435)
T ss_dssp CCEEEEE---------------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred CcEEEEE---------------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC
Confidence 7643221 1345579999996 458999999999999999887765 5678899999999994
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
++++++++.||.|++||++ .+..+..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 266 ---~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~----------- 325 (435)
T 1p22_A 266 ---DKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC----------- 325 (435)
T ss_dssp ---TTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-----------
T ss_pred ---CCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC-----------
Confidence 7899999999999999975 678888899999999999994 78999999999999999987
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc-------
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA------- 346 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~------- 346 (409)
+..+..+.+|... +.++++ ++++|++|+.||.|++||+.+++
T Consensus 326 -----------------------~~~~~~~~~h~~~------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 374 (435)
T 1p22_A 326 -----------------------GACLRVLEGHEEL------VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374 (435)
T ss_dssp -----------------------CCEEEEECCCSSC------EEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred -----------------------CCEEEEEeCCcCc------EEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc
Confidence 3455666666532 223344 68999999999999999998776
Q ss_pred --eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 --QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 --~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+..+.+|.+.|++++| ++++|++++.||.|++||+.+....
T Consensus 375 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 375 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 88899999999999999 7789999999999999999876544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=313.59 Aligned_cols=321 Identities=16% Similarity=0.199 Sum_probs=246.2
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
...+++|||||.+++++... .+|..........+.+|.++|++++|+|++++|++++.||.|++||+.++..+...
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence 35789999999998886543 34443333344578899999999999999999999999999999999988665543
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 158 (409)
..|...|.+++|+|++++|++++.||.|++||+.++..... .. .+|...|.+++|+| ++..|+
T Consensus 94 --~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~------------~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 94 --EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TF------------EGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp --ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE--EE------------ECCSSCEEEEEEETTEEEEEE
T ss_pred --ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE--EE------------cCCCCcEEEEEEEcCCCCEEE
Confidence 45667899999999999999999999999999976522111 00 13455799999999 889999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeC-CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++.||.|++||+.+++....+..+. ..+.+++|+| +++.+|++++.||.|++||++ .+.....+.+|...|.+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSF 233 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEE
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEE
Confidence 99999999999999888877776554 8999999993 288999999999999999975 67778888899999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
++|+|+++++++++.||.|++||+.+.. .+..+..+. ..+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~----------------------------------~~~~~~~~~------~~v 273 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK----------------------------------VEKTLNVGL------ERS 273 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCS----------------------------------EEEEECCSS------SSE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------EEEEeecCC------CcE
Confidence 9999999999999999999999998733 233333332 123
Q ss_pred EeeeecCCCC--EEEEEeCCCeEEEEEccCCceE-------------------------------------------EEe
Q 015301 317 FSPEYSTAQK--YIYTGSSDNSVYIYDLVSGAQV-------------------------------------------AKL 351 (409)
Q Consensus 317 ~~~~~s~~~~--~l~~~~~dg~v~i~d~~~~~~~-------------------------------------------~~~ 351 (409)
++++++|++. +++++ .++.+.+|++...... ..+
T Consensus 274 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 3445666654 23333 3444666665432111 112
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+...+.+++|+|++++|++++ ||.+.+|++..
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 23455678888888888888887 78888888754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=288.37 Aligned_cols=319 Identities=15% Similarity=0.227 Sum_probs=245.2
Q ss_pred ecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc
Q 015301 10 SGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW 86 (409)
Q Consensus 10 s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 86 (409)
++++.++++++. ..+|..........+.+|.+.|++++|+|++ +|++|+.||+|++||++++..... ..+|..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~ 204 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNS 204 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSS
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCC
Confidence 335556666443 3455544444455788999999999999988 999999999999999998865544 445777
Q ss_pred eEEEEEeC--CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee--------eeecCCCCcceeeEEEEEcCCCCe
Q 015301 87 TITDTSLS--PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL--------DFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 87 ~v~~~~~s--~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.|.+++|+ +++++|++++.|+.|++||+.+................ .+.....+|...+.++ ++++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence 99999998 57899999999999999999877543221111000000 0111123456667776 568899
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++++.|+.|++||+.+++.+..+.+|...|.+++|+ ++++++++++.||.|++||++ .+..+..+.+|...|.+
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGL 357 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEE
Confidence 9999999999999999999999999999999999999 899999999999999999975 77888899999999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+.|+ +.+|++++.||.|++||+++... ..... +.. ..
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~----------------------------------~~~~~-~~~------~~ 394 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSR----------------------------------KFSYH-HTN------LS 394 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCE----------------------------------EEEEE-CTT------CC
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCce----------------------------------eeeec-CCC------Cc
Confidence 9997 57999999999999999987321 11111 111 11
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE-eccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
...++++++++|++|+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 395 ~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 395 AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 2335778899999998 89999999999999886 67789999999997 3456666777887666543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=283.67 Aligned_cols=259 Identities=17% Similarity=0.147 Sum_probs=198.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|+.|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 356799999999999999999999999999999999876432 2234567888999999986 4899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCee---eeEEcCCCCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSD 186 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~ 186 (409)
||+.++........ .+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.. ...+.+|...
T Consensus 86 Wd~~~~~~~~~~~~-------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 86 WREENGTWEKSHEH-------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp ECCSSSCCCEEEEE-------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EECCCCcceEEEEc-------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 99987642211111 245668999999997 78999999999999999987632 3445789999
Q ss_pred eEEEEEeCCC----------------CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeE
Q 015301 187 VNTVCFADET----------------GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYF 246 (409)
Q Consensus 187 v~~~~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l 246 (409)
|.+++|+|.. +.+|++|+.|+.|++||++.. ........+.+|...|.+++|+|++ .+|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999999431 468999999999999997410 0114566788999999999999986 789
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
++++.|++|++||++...... .....+..|. ..+++++|+|+++
T Consensus 232 as~s~D~~v~iw~~~~~~~~~------------------------------~~~~~~~~~~------~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNT------------------------------WSPKLLHKFN------DVVWHVSWSITAN 275 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCC------------------------------CBCCEEEECS------SCEEEEEECTTTC
T ss_pred EEEcCCCeEEEEEccCccccc------------------------------hhhhhhhcCC------CcEEEEEEcCCCC
Confidence 999999999999987621100 0011222232 3456778999999
Q ss_pred EEEEEeCCCeEEEEEcc
Q 015301 327 YIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~ 343 (409)
+|++++.|+.|++|+..
T Consensus 276 ~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEC
Confidence 99999999999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=279.80 Aligned_cols=264 Identities=17% Similarity=0.194 Sum_probs=210.4
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~ 110 (409)
...+.+|.+.|++++|+|++++||+|+.||.|+||++.... .........|...|.+++|+|+ +++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 45789999999999999999999999999999999997542 2233345667889999999987 89999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSD 186 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~ 186 (409)
+||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+..|...
T Consensus 83 iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 83 IWKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EEEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEEcCCCceeEeeee-------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 999988753222111 134557999999999 9999999999999999998873 34456789999
Q ss_pred eEEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---CCeEEEEeC
Q 015301 187 VNTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGK 251 (409)
Q Consensus 187 v~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~ 251 (409)
|.+++|+|. ++.+|++++.||.|++||++...........+.+|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 999999943 68999999999999999987433333455677889999999999999 899999999
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
||.|++||++....... ..+.....+. ..+.+++|+|++++|+++
T Consensus 230 dg~i~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALS 274 (379)
T ss_dssp TSCEEEEEESSTTSCCE-----------------------------EEESSSSCCS------SCEEEEEECSSSCCEEEE
T ss_pred CCEEEEEeCCCCCccce-----------------------------eeeeccccCC------CcEEEEEEcCCCCEEEEe
Confidence 99999999987421100 0011111122 235567899999999999
Q ss_pred eCCCeEEEEEccCC
Q 015301 332 SSDNSVYIYDLVSG 345 (409)
Q Consensus 332 ~~dg~v~i~d~~~~ 345 (409)
+.||.|++|++...
T Consensus 275 ~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 275 GGDNKVTLWKENLE 288 (379)
T ss_dssp ESSSSEEEEEEEET
T ss_pred cCCCcEEEEeCCCC
Confidence 99999999998743
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=283.16 Aligned_cols=281 Identities=19% Similarity=0.316 Sum_probs=235.4
Q ss_pred CCceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 32 GPWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 32 ~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
....+.+|.+.| .|+ +++|++|++|+.||+|++||+.++..+.. ..+|...|.+++|+ +++|++++.||.|+
T Consensus 110 ~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred eeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 345788999875 554 45689999999999999999998865544 45677899999997 56999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++..... .+|...|.+++|+ ++.+++++.||.|++||+.+++.+..+.+|...|.++
T Consensus 183 vwd~~~~~~~~~~---------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 183 VWNAETGECIHTL---------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEETTTTEEEEEE---------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEECCcCcEEEEE---------------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999887543221 1455579999995 5679999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
++ +++++++++.||.|++||++ .+.....+.+|...|.++.| ++.++++++.||.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 98 47789999999999999975 67788888899999999999 788999999999999999987
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+..+..+.+|..... . +++++++|++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~------~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTS------G--MELKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEE------E--EEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEE------E--EEEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 344555555543221 1 223578999999999999999999999999
Q ss_pred ecc---CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 351 LDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 351 ~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.. |...|++++|+ +++|++++.||.|++||+.+++.
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 986 88899999995 57999999999999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=276.19 Aligned_cols=297 Identities=13% Similarity=0.098 Sum_probs=237.5
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++|||||+++++++. ..+|..........+.+|.+.|.+++|+|++++|++++.||.|++||+.++.......
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 113 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence 3678999999998887553 3455544445556788999999999999999999999999999999999886655433
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
+...|.+++|+|++++|++++.+ +.|++||+...................+.. ......+.+++|+|++
T Consensus 114 ----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 114 ----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT--HEGLDAATVAGWSTKG 187 (369)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC--CTTCCCEEEEEECGGG
T ss_pred ----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC--CcCccceeEEEEcCCC
Confidence 45589999999999999999998 999999998765433222211111000110 1112269999999999
Q ss_pred CeEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 155 QELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
++|++++.||.|++||+.+ .+.+..+..|...|.+++|+ +++++|++++.||.|++||++ .......+. +...
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCP 261 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCC
Confidence 9999999999999999998 78888899999999999999 799999999999999999975 556666555 7788
Q ss_pred eeEEEEcCCCCeEEEEeCCC--------------cEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 234 ITFIDSRRDGRYFISNGKDQ--------------TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
+..++|+|+++++++++.++ .+++||+.+ ...
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~ 307 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF----------------------------------EEE 307 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTT----------------------------------CCE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC----------------------------------Ccc
Confidence 99999999999999999988 788888876 445
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+..+.+|. ..+.+++|+|++++|++++.||.|++|+++++.....+
T Consensus 308 ~~~~~~~~------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 308 IGRVQGHF------GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EEEEECCS------SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred hhheeccc------CcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 56666665 33556789999999999999999999999876554433
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=280.06 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=200.7
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.+++|+|||+++++++.. .++...... ....+.+|...|.+++|+|++++|++++.||.|++||++++... ..
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~ 89 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-PT 89 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-EE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-ee
Confidence 5789999999988876433 344433322 45678899999999999999999999999999999999887433 33
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....|...|.+++|+|++++|++++.|+.|++||+........... ....|...|.+++|+|++++|+
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEEEEECTTSSEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee-----------eecccCCCeeEEEEcCCCCEEE
Confidence 33455777899999999999999999999999999987653211111 0123455799999999999999
Q ss_pred EEEecCeEEEEEC------------------CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 159 AAGSDNFIYVYDL------------------QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 159 ~~~~d~~i~v~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+++.|+.|++||+ ..++.+..+..|...|.+++|+ +++++|++++.||.|++||++ .
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~ 233 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADAD----K 233 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGG----G
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECC----C
Confidence 9999999999995 4677888888999999999999 889999999999999999976 6
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+..+..+..|..+|.+++|+|++.+++++ .|+.|++|+++.
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 77888888999999999999999988877 899999999987
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=278.34 Aligned_cols=255 Identities=20% Similarity=0.206 Sum_probs=199.5
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 158 (409)
..+|...|++++|+|++++|++|+.|+.|++||+.++....... ..+|..+|.+++|++ ++++|+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-------------l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-------------LRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-------------EECCSSCEEEEEECCGGGSSCEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-------------EcCCCccEEEEEeCCCCCCCEEE
Confidence 34688899999999999999999999999999997764221111 125667899999986 489999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+++.|+.|++||+++++ ....+.+|...|.+++|+|. ++.+|++++.|+.|++||++... .......+.+|...+.
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCN 154 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcc
Confidence 99999999999998874 55677889999999999943 27899999999999999976210 0112345678899999
Q ss_pred EEEEcCC-----------------CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 236 FIDSRRD-----------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 236 ~~~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
+++|+|+ +++|++++.|+.|++||++.... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-------------------------------~~ 203 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-------------------------------WK 203 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-------------------------------EE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-------------------------------cc
Confidence 9999997 47899999999999999864210 02
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCC----CEEEEEeCCCeEEEEEccCCc----eEEEeccCCcceeeeEEecCcCeE
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQ----KYIYTGSSDNSVYIYDLVSGA----QVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
.+..+.+|.. .+.+++|+|++ ++|++++.|++|++|++.+.. ....+..|...|.+++|+|++++|
T Consensus 204 ~~~~l~~h~~------~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 204 EEQKLEAHSD------WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL 277 (316)
T ss_dssp EEECCBCCSS------CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred eeeecccCCC------ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence 3445566652 34566788876 899999999999999997631 233456788999999999999999
Q ss_pred EeecCCCeEEEEecCC
Q 015301 371 ISSSWDCNIVRWEIPG 386 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~ 386 (409)
++++.||.|++|+...
T Consensus 278 as~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEESSSCEEEEEECT
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=297.16 Aligned_cols=297 Identities=17% Similarity=0.243 Sum_probs=222.4
Q ss_pred ceeeEEecCc-eeEeeccce---EEEEeeecCC-----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRG-RFSAADSCH---VLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~---~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
..+++++|++ .++++++.+ .+|.+..... ...+.+|...|.+++|+|++++|++|+.||+|+|||+.++..
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 5789999875 677766544 3444332221 246889999999999999999999999999999999998865
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
... ..+|...|.+++|+|++++|++++.|+.|++||........ ......+|...|.+++|+|++
T Consensus 465 ~~~---~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~------------~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 465 TRR---FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT------------ISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE------------ECSSTTSCSSCEEEEEECSCS
T ss_pred eeE---EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee------------eccCCCCCCCcEEEEEEeCCC
Confidence 544 34677799999999999999999999999999975442211 122234567789999999986
Q ss_pred --CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 155 --QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 155 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
..|++++.|+.|++||+.+++....+.+|...|++++|+ +++++|++++.||.|++||++ .+..+..+. +..
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~ 603 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANS 603 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSS
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCC
Confidence 579999999999999999999999999999999999999 899999999999999999975 556665554 456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.+.+++|+|++.++++++ ++.|++||+++............... ......++......
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------------------EKADNSGPAATKRK 661 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------------------------------C
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------------------ccccccccccCCce
Confidence 799999999988777665 56699999988543322211000000 00000000000011
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1124567899999999999999999999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=282.33 Aligned_cols=297 Identities=15% Similarity=0.179 Sum_probs=231.4
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeee-eeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCC
Q 015301 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~ 116 (409)
......++++|+...++ +++.||.|+||++...... .......+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34456788999876544 5788999999999765433 22334567888999999999 899999999999999999988
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEe
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFA 193 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~ 193 (409)
+......... .. ...+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ ..|...|.+++|+
T Consensus 114 ~~~~~~~~~~--~~------~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREP--VI------TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSC--SE------EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred CCCccccCCc--eE------EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 7432111000 00 001456689999999998 69999999999999999999999999 8899999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccc-eeEEEEcCCCCeEEEE---eCCCcEEEeeCCCCccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEG-ITFIDSRRDGRYFISN---GKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~ 268 (409)
+++++|++++.||.|++||++ .+.....+ ..|.+. +..+.|+|++++|+++ +.|+.|++||+++....
T Consensus 186 -~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-- 258 (402)
T 2aq5_A 186 -RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-- 258 (402)
T ss_dssp -TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC--
T ss_pred -CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC--
Confidence 799999999999999999976 56677776 677765 8999999999999998 78999999999874321
Q ss_pred ccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEE-EeCCCeEEEEEccCCc
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYT-GSSDNSVYIYDLVSGA 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~ 346 (409)
+.... .+. ..+..++|+|++++|++ |+.||.|++||+.+++
T Consensus 259 -------------------------------~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 259 -------------------------------LSLQELDTS------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp -------------------------------SEEEECCCC------SSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred -------------------------------ceEEeccCC------CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 11111 111 12345679999999965 5579999999999987
Q ss_pred e-EEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 Q-VAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 ~-~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
. +..+.. |..+|.+++|+|++.++++ .|+.+++|++.+....
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 302 PFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp TCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred cceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 4 445544 5589999999999998775 4669999999875443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=279.08 Aligned_cols=282 Identities=13% Similarity=0.134 Sum_probs=211.1
Q ss_pred ceeeEEecCceeEeeccc----------eEEEEeeecCCC----------ceeecCCCCeEEEEECCCCCEEEEE-----
Q 015301 4 GREVNYSGRGRFSAADSC----------HVLSRYLPVNGP----------WKVDGMNSRVYTSQFSNDGSFFVAA----- 58 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~----------~~~~~~~~~~~~----------~~l~~h~~~v~~~~~s~~~~~l~t~----- 58 (409)
..+++|+|||+++++++. ..+|...+.... ..|.+|...|.+++++ ++.+++|
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 468999999999998642 234444333222 2467899999998775 4566665
Q ss_pred ------eCCCcEEEEEcCCCeeeeee------eecccccceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccc
Q 015301 59 ------SQESNIKVYNVDKNWKIQKD------IETKALRWTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 59 ------~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~ 124 (409)
+.|+++++|++......... .....+...+.+++|+|||++|++++ .|+.|++||+.+++......
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~ 174 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE 174 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC
Confidence 45788999998765322211 11223344689999999999987654 68999999998876533221
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
|...|.+++|+|+|+++++++. +.+.+|+..+++.+.. ...|...|.+++|+ |++.++++
T Consensus 175 ----------------~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~ 236 (365)
T 4h5i_A 175 ----------------TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIA 236 (365)
T ss_dssp ----------------CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEE
T ss_pred ----------------CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEE
Confidence 2336999999999999999875 4577777777766543 35688899999999 89999999
Q ss_pred eeCCC----eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 203 GSDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 203 ~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
++.|+ .+++|++............+.+|...|++++|+|+|++|++|+.|+.|+|||+++
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~---------------- 300 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD---------------- 300 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT----------------
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC----------------
Confidence 98887 6888987532222233456778999999999999999999999999999999987
Q ss_pred ccccccccccceeccccCccceeee-ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
++.+..+ .+|. ..+.+++|||||++||+|+.|++|+|||+...
T Consensus 301 ------------------~~~~~~~~~gH~------~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 ------------------LSMSKIFKQAHS------FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ------------------TEEEEEETTSSS------SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ------------------CcEEEEecCccc------CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3445543 5676 34567799999999999999999999999643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=268.92 Aligned_cols=288 Identities=16% Similarity=0.237 Sum_probs=222.3
Q ss_pred ceeeEEecC-ceeEeeccc---eEEEEeeecCC-----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGR-GRFSAADSC---HVLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~d-g~~~~~~~~---~~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
+.+|+|+|+ ++++++++. ..+|++..... ...+.+|...|.+++|+|+|++|++++.|+.|++|+......
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence 578999998 578877554 45666544332 246789999999999999999999999999999999998855
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
...... +...+..+.+++++++|++++.|+.+++||+........ ....|...+..++|++++
T Consensus 121 ~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 121 TRRFVG---HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV--------------QDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE--------------CSSSCSSCEEEEEECSCS
T ss_pred eeeecC---CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE--------------EeccccCcccceEEccCC
Confidence 544333 344788899999999999999999999999876543211 112455579999998864
Q ss_pred --CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 155 --QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 155 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
.++++++.|+.|++||+.+++.+..+.+|...|++++|+ |++++|++++.||.|++||++ ....+..+. +..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~----~~~~~~~~~-~~~ 257 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLN----EGKHLYTLD-GGD 257 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEE-CSS
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEec----cCceeeeec-CCc
Confidence 567889999999999999999999999999999999999 899999999999999999975 566666665 456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.+.++.|+|++. +++++.|+.|++||++.......... ........+|.
T Consensus 258 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~h~----- 306 (340)
T 4aow_A 258 IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQ-------------------------EVISTSSKAEP----- 306 (340)
T ss_dssp CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECC-------------------------C-------CCC-----
T ss_pred eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccc-------------------------cceeeeccCCC-----
Confidence 899999999875 56677899999999987432211110 00111122232
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+.+++|+|++++|++|+.||.|+|||+++|+
T Consensus 307 -~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 307 -PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 345667899999999999999999999999885
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=278.33 Aligned_cols=314 Identities=13% Similarity=0.090 Sum_probs=225.4
Q ss_pred cceeeEEecCceeEeecc---ceEEEEeeecC------CCceeecCCCCeEEEEECCC----C---CEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGRGRFSAADS---CHVLSRYLPVN------GPWKVDGMNSRVYTSQFSND----G---SFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~---~~~~~~~~~~~------~~~~l~~h~~~v~~~~~s~~----~---~~l~t~~~d~~i~v 66 (409)
.+.+++|+| .++++++ ...+|...... ....+.+|...|++++|+|+ + ++|++++.||.|++
T Consensus 18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 357899999 4444433 33455544444 35678899999999999999 9 99999999999999
Q ss_pred EEcCCCee-----eeeeeecccc--cceEEEEEeC----CCCcE-EEEEecCCEEEEEEcCC------Cccccccceece
Q 015301 67 YNVDKNWK-----IQKDIETKAL--RWTITDTSLS----PDQRF-LVYASICAIVNIVDVGS------SARESLANVTEI 128 (409)
Q Consensus 67 w~~~~~~~-----~~~~~~~~~~--~~~v~~~~~s----~~~~~-l~~~~~dg~i~~w~~~~------~~~~~~~~~~~~ 128 (409)
|++.++.. .........+ ...|.+++|+ |++++ |++++.||.|++||+.+ ++..........
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 99987754 3333222212 4689999999 99999 99999999999999987 433221100000
Q ss_pred eeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC---C---CCCeEEEEEeCCCCcEEEE
Q 015301 129 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA---H---KSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~ 202 (409)
.. .......|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+ +++++|++
T Consensus 176 ~~---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~ 250 (397)
T 1sq9_A 176 QG---TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAI 250 (397)
T ss_dssp EE---EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEE
T ss_pred ee---eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEE
Confidence 00 000112355679999999999 999999999999999999999999988 9 9999999999 78999999
Q ss_pred eeCC---CeEEEecccccccCCceeeeeec-------------cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 203 GSDD---SLCKVWDRRCFISKGRANGVLMG-------------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 203 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
++.| |.|++||++ ....+..+.. |...|.+++|+|++++|++++.||.|++||+++....
T Consensus 251 ~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 251 AHDSNSFGCITLYETE----FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEETTEEEEEEEETT----TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EecCCCCceEEEEECC----CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 9999 999999976 6677778887 9999999999999999999999999999999874332
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC----------CEEEEEeCCCe
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ----------KYIYTGSSDNS 336 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------~~l~~~~~dg~ 336 (409)
............. . ....+ .......|. ..+.+++|+|++ ++|++++.||.
T Consensus 327 ~~~~~~~~~~~~~-------~-----~~~~g-~~~~~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 327 TTLNMHCDDIEIE-------E-----DILAV-DEHGDSLAE------PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEEECCGGGCSSG-------G-----GCCCB-CTTSCBCSS------CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEEecccCcccch-------h-----hhhcc-ccccccccC------CceeEEEeccccccccccccccceEEEecCCCc
Confidence 2111000000000 0 00000 000001112 345677899998 79999999999
Q ss_pred EEEEEccCCc
Q 015301 337 VYIYDLVSGA 346 (409)
Q Consensus 337 v~i~d~~~~~ 346 (409)
|++|++.+++
T Consensus 388 i~iw~~~~g~ 397 (397)
T 1sq9_A 388 IRWFREAGGK 397 (397)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEcCCCC
Confidence 9999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=283.42 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=187.0
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.+++|||||+++++++. ..++..... .....+.+|.+.|++++|+|++++|++++.|++|++||+.++......
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 578999999999887643 345555443 445678899999999999999999999999999999999987523334
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....|...|.+++|+|++++|++++.|+.|++||+.+++......... ..|...|.+++|+|++++|+
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-----------RPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-----------SSCCSCEEEEEECTTSSEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-----------cccCCCeEEEEEcCCCCEEE
Confidence 4456678899999999999999999999999999998775311111111 12556899999999999999
Q ss_pred EEEecCeEEEEECC------------------CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 159 AAGSDNFIYVYDLQ------------------ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 159 ~~~~d~~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+++.|+.|++||+. .++++..+ .|...|.+++|+ |++++|++++.||.|++||++ .
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~----~ 236 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPS----A 236 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEEC----S
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECC----C
Confidence 99999999999985 34455556 899999999999 899999999999999999976 4
Q ss_pred Cce----eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 221 GRA----NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 221 ~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+.. +..+.+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 444 77888999999999999999999988766655 66665
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=289.25 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=201.3
Q ss_pred ecCCCCeEEEEECCCC---------CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 37 DGMNSRVYTSQFSNDG---------SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~---------~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
..+.+.|.+++|+|++ ++||+|+.++.. . ..+|+++.+++++.|+
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------~--------~~~~~~~~laS~s~D~ 183 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------E--------PLNEHLEMFDKEKHSS 183 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CE
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------C--------ccchhhhhhccCCCCc
Confidence 3478999999999987 799999866420 0 1368999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC------CCeEEEEEecCeEEEEECCCCee-----
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD------GQELVAAGSDNFIYVYDLQANKC----- 176 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~----- 176 (409)
.|+||++.+++........ + ..|...|.+++|+|+ +.+|++++.||+|++||+.+++.
T Consensus 184 tI~iWd~~~~~~~~~~~~~-------l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQT-------I----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp EEEEEEEETTTCCEEEEEE-------E----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred eEEEEEccCCCCCceEEEE-------E----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 9999999776532110000 0 023346999999996 57999999999999999976642
Q ss_pred ------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE--EEcCCC-CeEE
Q 015301 177 ------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI--DSRRDG-RYFI 247 (409)
Q Consensus 177 ------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~ 247 (409)
...+.+|...|++++|+ ++ ..|++|+.||+|++||++. ...+...+.+|...|.++ .|+|++ .+|+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~---~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD---PEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEES-SS-SEEEEEETTSEEEEEETTB---CSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEEcCCCCEEEEEec-CC-CeEEEEeCCCEEEEEECCC---CCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 23678899999999999 43 4899999999999999862 123445678899999999 578887 8999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.|++|++||+++. ..+..+.+|.... .+.+++|+|+++.
T Consensus 328 S~S~D~tvklWD~~~~----------------------------------~~~~~~~~~~~~~----~v~~v~fsp~~~~ 369 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDI----------------------------------ATTKTTVSRFRGS----NLVPVVYCPQIYS 369 (524)
T ss_dssp EEETTSEEEEECGGGH----------------------------------HHHCEEEEECSCC----SCCCEEEETTTTE
T ss_pred EeccCCeEEEEECCCC----------------------------------CcccccccccccC----cccceEeCCCcCe
Confidence 9999999999999873 2333344443111 1345679999999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999988889999999999999999999999999999999998653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=279.92 Aligned_cols=291 Identities=9% Similarity=0.045 Sum_probs=216.0
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+++++.+.+.... .......+.+|...|.+++|+|+| .++.+.+|+.+... .... .
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~----~~~~-~ 83 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG----LLNS-Q 83 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC----SSTT-S
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce----Eeec-C
Confidence 46899999999999988776666 244456778999999999999999 56666666654321 1111 2
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
|...|.+++|||+|+.||+++.||.|++||..+ . .... . +.. .-....+.+++|+|+|++|++|+.|
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~--l~~l-~-~~~-------~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M--LTNL-D-SKG-------NLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E--EEEC-C-CSS-------CSTTTCEEEEEECSSSSCEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e--eeec-c-CCC-------ccccccEEEEEEcCCCCEEEEEcCC
Confidence 356899999999999999999999999999543 1 0000 0 000 0001259999999999999999999
Q ss_pred CeEEEEECCCCee-------eeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce---eeee-e
Q 015301 164 NFIYVYDLQANKC-------SLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVL-M 228 (409)
Q Consensus 164 ~~i~v~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~-~ 228 (409)
|+|++||+.+++. +.++ .+|...|.+++|+ |++ +++++.|+.|++||+. .... ...+ .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~----~~~~~~~~~tL~~ 223 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVS----ASSHQPVSRMIQN 223 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCC----SSSSCCCEEEEEC
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECC----CCccccceeeecc
Confidence 9999999998753 4565 6788899999999 777 8888999999999975 3332 2345 4
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-ccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHS 307 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 307 (409)
+|...|.+++|+ ++.|++++ +++|++||+.+. ....+. +|.
T Consensus 224 ~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~-----------------------------------~~~~~~~gh~ 265 (588)
T 2j04_A 224 ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY-----------------------------------SISSLKTGSL 265 (588)
T ss_dssp CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT-----------------------------------EEEEEECSCC
T ss_pred cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC-----------------------------------eEEEEEcCCC
Confidence 788899999999 68888887 699999998872 221222 454
Q ss_pred ceeeeeEEEEeeee--cCCCCEEEEEeCCCeEEEEEccC-----------------------CceEEEeccCCcceeeeE
Q 015301 308 VLRTLIRCYFSPEY--STAQKYIYTGSSDNSVYIYDLVS-----------------------GAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 308 ~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~v~i~d~~~-----------------------~~~~~~~~~~~~~v~~~~ 362 (409)
..++.+++ +|++..|+++++||. ++|.... ++.+..+. +...|.+++
T Consensus 266 ------~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va 337 (588)
T 2j04_A 266 ------ENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGIS 337 (588)
T ss_dssp ------SCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEE
T ss_pred ------ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEE
Confidence 23344577 888999999999998 8888631 11122222 244689999
Q ss_pred EecCcCeEEeec
Q 015301 363 WHPIYPMLISSS 374 (409)
Q Consensus 363 ~s~~~~~l~s~~ 374 (409)
|||||+.+|+++
T Consensus 338 ~SPdG~~lA~~~ 349 (588)
T 2j04_A 338 LSPDGYSIAIVY 349 (588)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999999999886
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=273.74 Aligned_cols=277 Identities=11% Similarity=0.129 Sum_probs=212.6
Q ss_pred ceeeEEecCc-eeEeeccc---eEEEEeeecCCCceee--cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 4 GREVNYSGRG-RFSAADSC---HVLSRYLPVNGPWKVD--GMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~---~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.+++|+|+| +++++++. ..+|..........+. +|.+.|.+++|+| ++++|++++.|+.|++||+.+. ...
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~ 154 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQ 154 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceE
Confidence 5789999999 77777654 3455544333333443 7999999999999 7899999999999999999864 555
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ- 155 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 155 (409)
.......+...|.+++|+|++++|++++.|+.|++||+..... .. . ..|...|.+++|+|+++
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~--~-------------~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI-FK--E-------------KLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEE-EE--E-------------ECSSSCEEEEEECSSCTT
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEE-EE--e-------------ccCCCcEEEEEECCCCCC
Confidence 5555555667899999999999999999999999999943211 11 1 13455799999999999
Q ss_pred eEEEEEecCeEEEEECCC----CeeeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeecc
Q 015301 156 ELVAAGSDNFIYVYDLQA----NKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
+|++++.|+.|++||+.+ +..+..+ .|...|.+++|+ + ++.+|++++.|+.|++||++ .......+..|
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~ 292 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIH 292 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETT----BTTSCSEEEEC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECC----CCccccccccc
Confidence 899999999999999987 5566656 699999999999 6 99999999999999999986 34443444433
Q ss_pred c-----------------cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 231 L-----------------EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 231 ~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
. ..+..++++|++++ +++.|+.|++||+++
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~------------------------------- 339 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS------------------------------- 339 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT-------------------------------
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC-------------------------------
Confidence 2 33445677777776 778999999999987
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
+..+..+.++... ..+..++|+|++++|++|+ ||.|++||+++
T Consensus 340 ---~~~~~~l~~~~~~----~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 ---GGLVHQLRDPNAA----GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ---CCEEEEECBTTBC----SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ---CceeeeecCCCCC----ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 3445555543211 1222347899999999997 99999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=276.45 Aligned_cols=310 Identities=15% Similarity=0.049 Sum_probs=223.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeeeeeec-----------------------------------
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW---KIQKDIET----------------------------------- 81 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~----------------------------------- 81 (409)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 47799999998886 32221100
Q ss_pred ----------------ccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcC--CCccccccceeceeeeeeeecCCCCcc
Q 015301 82 ----------------KALRWTITDTSLSPDQRFL-VYASICAIVNIVDVG--SSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 82 ----------------~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
..|...|.+++|+|++++| ++++.||.|++||+. +++........ .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-------------CFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-------------ECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-------------cCC
Confidence 1233369999999999996 889999999999998 55443222110 123
Q ss_pred eeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee----EEcCCCCCeEEEEEeCCC---CcEEEEeeCCCeEEEeccc
Q 015301 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL----RIPAHKSDVNTVCFADET---GHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 215 (409)
..|.+++|+|++++|++++.+|.|++|++.+++... .+.+|...|.+++|+ ++ +.+|++++.|+.|++||++
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEES
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECC
Confidence 369999999999999999999999999998877554 677899999999999 77 8899999999999999975
Q ss_pred ccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc--cccccccccccccccceec
Q 015301 216 CFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL--RDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 216 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 292 (409)
.+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++........... ..+.... .
T Consensus 229 ----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~----~------- 292 (450)
T 2vdu_B 229 ----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ----H------- 292 (450)
T ss_dssp ----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT----S-------
T ss_pred ----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc----c-------
Confidence 5555555 56899999999999 99999999999999999998855332221100 0000000 0
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEc--cCC---ceEEEeccCCcceeeeEEecC
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDL--VSG---AQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~--~~~---~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.. ...+.... .......+..+.++|++++|++++ .++.|++|++ .++ +.+..+..| ..|.+++|+|+
T Consensus 293 ----~~-~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 293 ----LA-PPRFQNEN-NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp ----BC------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred ----cc-cccccccc-cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 00 00000000 000112234567889999999999 8999999999 555 677788877 88999999996
Q ss_pred cCeEEeecC------CCeEEEEecCCC
Q 015301 367 YPMLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 367 ~~~l~s~~~------dg~i~iw~~~~~ 387 (409)
+.++++++. +..|.+|.+...
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred cEEEEEecccCCCCCCcceEEEEEEcC
Confidence 544444443 456888887543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=269.38 Aligned_cols=304 Identities=12% Similarity=0.115 Sum_probs=219.9
Q ss_pred cceeeEEecCce-eEeeccc------eEEEEeeecCCC-ceeecCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 015301 3 VGREVNYSGRGR-FSAADSC------HVLSRYLPVNGP-WKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~------~~~~~~~~~~~~-~~l~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~ 71 (409)
.+.+++|+|++. ++++++. ..+|........ ....+|...|++++|+|+ +++|++++.||.|++||+.+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence 357899999994 5555532 234443322222 223489999999999999 69999999999999999998
Q ss_pred Ce-eeeeeeecccccceEEEEE------eCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcce
Q 015301 72 NW-KIQKDIETKALRWTITDTS------LSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 72 ~~-~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
+. ... ....|...|.++. |+|++++|++++.||.|++||+.+++. ..... .....+..
T Consensus 100 ~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~~~~~ 165 (357)
T 3i2n_A 100 PEMPVY---SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-----------PVQGENKR 165 (357)
T ss_dssp CSSCSE---EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-----------CCTTSCCC
T ss_pred CCccEE---EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-----------ccCCCCCC
Confidence 75 333 2446777899995 578999999999999999999987652 11111 11111233
Q ss_pred eeEEEE----EcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC---CCcEEEEeeCCCeEEEecccc
Q 015301 144 GIFSVK----FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGHLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 144 ~v~~~~----~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 216 (409)
.+.+++ |+|++++|++++.|+.|++||+++++.... ..|...|.+++|+ | ++++|++++.||.|++||++.
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCcC
Confidence 688888 788999999999999999999999887554 5688999999999 6 899999999999999999873
Q ss_pred cccCCceeee-----eeccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 217 FISKGRANGV-----LMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 217 ~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...... +.+|...|.+++|+|+++ +|++++.||.|++||++................
T Consensus 244 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~------------- 306 (357)
T 3i2n_A 244 ----QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG------------- 306 (357)
T ss_dssp ----EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-------------
T ss_pred ----CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-------------
Confidence 333333 348999999999999998 899999999999999987543321111000000
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE-EEeCCCeEEEEEccCCce
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~ 347 (409)
.......+..+.+|. ..+.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 307 --~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 307 --VAGSVSLLQNVTLST------QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp --CCCEEEEEEEEECCS------SCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred --cccccceeeccccCC------CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 000113345555554 3456678999999998 799999999999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=282.75 Aligned_cols=283 Identities=13% Similarity=0.157 Sum_probs=218.9
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.|+|+++.+++++ .|+... ..+... ..+|...|++++|+| ++++|++|+.||.|++||+.+.+.......
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-~~~~~~--~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-KLIATL--MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-CEEEEE--CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------cccccc-eEEeee--ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4678888887765 487443 233332 256778999999999 999999999999999999876221110100
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---CCeeeeEEcC------------CCCCeEEE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRIPA------------HKSDVNTV 190 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~------------~~~~v~~~ 190 (409)
. ..+ .|..+|.+++|+|++++|++++.||.|++||+. +++....+.. +...+.++
T Consensus 105 ~-----~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 174 (437)
T 3gre_A 105 S-----LTY-----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174 (437)
T ss_dssp S-----EEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEE
T ss_pred e-----eec-----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEE
Confidence 0 000 245579999999999999999999999999994 4544433321 45666676
Q ss_pred E--EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 191 C--FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 191 ~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
. ++ +++.+|++++.||.|++||++ ....+..+.. |...|.+++|+|++++|++++.||.|++||+++
T Consensus 175 ~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---- 245 (437)
T 3gre_A 175 RAFVN-EEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---- 245 (437)
T ss_dssp EEEEC-SSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----
Confidence 6 44 678999999999999999976 6777778877 899999999999999999999999999999987
Q ss_pred ccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+..+..+. .+. ..+....+++.|+|++.+|++|+.||.|++||+.++
T Consensus 246 ------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 246 ------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 23344443 333 244455667788899999999999999999999999
Q ss_pred ceEEEecc--------------------------CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 346 AQVAKLDF--------------------------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 346 ~~~~~~~~--------------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+..+.+ |...|++++|+ ++++|++++.||.|++||+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 98877764 44568888888 6789999999999999999876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=268.64 Aligned_cols=294 Identities=13% Similarity=0.230 Sum_probs=222.7
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.||+++...++ +....+|......... .+.+|...|++++|+|+|++||+|+.||+|+|||+++++.+.. .
T Consensus 109 ~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~ 185 (420)
T 4gga_A 109 NLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---M 185 (420)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---E
T ss_pred eeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---E
Confidence 57899987744333 3444556544333333 3457889999999999999999999999999999999866554 4
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|...+.+++++ +..|++|+.|+.+++||.......... ..+|...+..+.|+|+++++++++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~--------------~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT--------------LSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------EECCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE--------------ecccccceeeeeecCCCCeeeeee
Confidence 5577789888875 679999999999999998765432111 013555799999999999999999
Q ss_pred ecCeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCCcEEEEe--eCCCeEEEecccccccCCceeeeeecccccee
Q 015301 162 SDNFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETGHLIFSG--SDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 162 ~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.|+.+++|+..+++ .+.....|...|.+++|+|.+..+++++ +.|+.|++||++ .+.....+..| ..+.
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~ 324 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVC 324 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-ccee
Confidence 99999999998765 3456678999999999997777887764 579999999975 66666666544 5788
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 236 FIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
++.|+|+++.+++++ .|+.|++||+++ ...+..+.+|..
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~----- 365 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTS----- 365 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCSS-----
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCC----------------------------------CcEEEEEcCCCC-----
Confidence 999999999888765 689999999987 456778888873
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeE
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
.+.+++|+|+|++|++|+.|++|+|||+.+..+......+...+....
T Consensus 366 -~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s 413 (420)
T 4gga_A 366 -RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS 413 (420)
T ss_dssp -CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred -CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence 456778999999999999999999999988776666655554443333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=272.63 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=221.4
Q ss_pred cceeeEEecC---c--eeEeeccc--eEEEEeeecCCCceeec-----CCCCeEEEEECCC----CCEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGR---G--RFSAADSC--HVLSRYLPVNGPWKVDG-----MNSRVYTSQFSND----GSFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~d---g--~~~~~~~~--~~~~~~~~~~~~~~l~~-----h~~~v~~~~~s~~----~~~l~t~~~d~~i~v 66 (409)
.+.+++|+|+ + .++++... ..++..........+.. |...|++++|+|+ +++|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3578999984 3 35554332 34555444444444443 6688999999999 679999999999999
Q ss_pred EEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 67 YNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
||+.+++.+.. ...|...|.+++|+| ++++|++++.||.|++||+.+++....... ...|...|
T Consensus 100 ~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~v 164 (366)
T 3k26_A 100 INPITMQCIKH---YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------VEGHRDEV 164 (366)
T ss_dssp ECTTTCCEEEE---EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------TTSCSSCE
T ss_pred EEchhceEeee---ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------cccccCce
Confidence 99998865544 335677999999999 899999999999999999988764332211 12455689
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc----------------------------CCCCCeEEEEEeCCCC
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----------------------------AHKSDVNTVCFADETG 197 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 197 (409)
.+++|+|++++|++++.|+.|++||+.+++....+. .|...|.+++|+ +
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 241 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---G 241 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---T
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---C
Confidence 999999999999999999999999998876544333 399999999998 6
Q ss_pred cEEEEeeCCCeEEEeccccccc----------CCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCcc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFIS----------KGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
++|++++.||.|++||++.... .......+..|...|.+++|+|+ +++|++++.||.|++||+++...
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 6999999999999999863211 11346677789999999999999 99999999999999999987432
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.. .....+.+|... ..+.+++|+|++++|++++.||.|++||+.
T Consensus 322 ~~------------------------------~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HK------------------------------AKCTTLTHHKCG----AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GG------------------------------CEEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cc------------------------------ccceEEcccccC----CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 11 122344444211 334567899999999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=267.04 Aligned_cols=285 Identities=15% Similarity=0.213 Sum_probs=215.8
Q ss_pred eeeEEecCceeEeecc-ceEEEEeeecCCCceeec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 5 REVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVDG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.++.|+++..+.++.+ ...+|..........+.. |...|++++|+|++++|++|+.||.|++||+.++..+.. ..
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~ 173 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT---MA 173 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---EC
T ss_pred EEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE---ec
Confidence 3567776544433333 234444433333334444 899999999999999999999999999999998865554 34
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|...|.+++| ++++|++++.||.|++||+......... . ..|...|.+++|+|++++|++++.
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~------------~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT--L------------QGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE--E------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE--E------------cCCCCCeeEEEEcCCCCEEEEEeC
Confidence 67779999999 4679999999999999999854321110 0 135557999999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
|+.|++||+.+++.+..+..|...|.+++|+|....++++++ .|+.|++||++ .+.....+. +...+.+++|+
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s 312 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWS 312 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEEC
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEEC
Confidence 999999999999999999999999999999955667888765 79999999975 566666664 66789999999
Q ss_pred CCCCeEEEE--eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 241 RDGRYFISN--GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 241 ~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|++++++++ +.||.|++||+++... .....+.+|. ..+..
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~--------------------------------~~~~~~~~h~------~~v~~ 354 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGL--------------------------------TKQVDIPAHD------TRVLY 354 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEE--------------------------------EEEEEEECCS------SCCCE
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccc--------------------------------eeEEEecCCC------CCEEE
Confidence 999999994 4899999999876221 1122234444 23445
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++|+|++++|++++.||.|++|++.+++.+...
T Consensus 355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 689999999999999999999999998876654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=269.74 Aligned_cols=254 Identities=18% Similarity=0.240 Sum_probs=208.2
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 158 (409)
..+|...|.+++|+|++++|++++.||.|++||+........... .+|..+|.+++|+++ +++|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-------------TGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-------------cCCCCcEEEEEeCCCCCCCEEE
Confidence 456788999999999999999999999999999974432211111 245668999999987 89999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+++.||.|++||+.+++ .+..+..|...|.+++|+ ++ +.+|++++.||.|++||++. ........+..|...|
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCT--TSCCCEEEEECCTTCE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCC--CCceeeEEecCCCCce
Confidence 99999999999999987 677788899999999999 66 89999999999999999872 2234455677899999
Q ss_pred eEEEEcC-------------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+| ++.+|++++.||.|++||++..... .....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------~~~~~ 200 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 200 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------eeeEE
Confidence 9999999 6999999999999999999763211 11233
Q ss_pred eeecccceeeeeEEEEeeeecCC---CCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|+ +++|++++.||.|++||+.+++ .+.....|...|++++|+|++++|+++
T Consensus 201 ~~~~h~------~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 201 TLEGHS------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEeccc------CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 445554 33556789999 8999999999999999998864 222233488899999999999999999
Q ss_pred cCCCeEEEEecCC
Q 015301 374 SWDCNIVRWEIPG 386 (409)
Q Consensus 374 ~~dg~i~iw~~~~ 386 (409)
+.||.|++|++..
T Consensus 275 ~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 275 GGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSEEEEEEEE
T ss_pred cCCCcEEEEeCCC
Confidence 9999999999974
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=295.22 Aligned_cols=262 Identities=17% Similarity=0.199 Sum_probs=207.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++|++|+.||+|+|||+..+. ........+|...|.+++|+|+ +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4678999999999999999999999999999999998542 2333445678889999999988 999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v 187 (409)
||+.+++....... ..|..+|.+++|+|+ ++.+++|+.||.|++||+.++. ....+.+|...|
T Consensus 82 wd~~~~~~~~~~~~-------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 82 WKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred EECCCCcccccccc-------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence 99987652222111 235568999999999 9999999999999999998773 345567899999
Q ss_pred EEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---CCeEEEEeCC
Q 015301 188 NTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGKD 252 (409)
Q Consensus 188 ~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d 252 (409)
.+++|+|. ++.++++|+.||.|++||++...........+.+|...|.+++|+|+ +.+|++++.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 99999943 58999999999999999987433333566778889999999999999 8999999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|.|++||+++...... ..+.....+. ..+.+++|+|++++|++|+
T Consensus 229 g~I~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp SCEEEEEESSSSSCCB-----------------------------CCBSSSSCCS------SCCCCEEECTTTCCEEEEC
T ss_pred CEEEEecCCCCCCcce-----------------------------eEEeccCCCC------CceEEEEEcCCCCEEEEEc
Confidence 9999999987432110 0111112222 2345668999999999999
Q ss_pred CCCeEEEEEccC
Q 015301 333 SDNSVYIYDLVS 344 (409)
Q Consensus 333 ~dg~v~i~d~~~ 344 (409)
.||.|++|++.+
T Consensus 274 ~Dg~I~vwd~~~ 285 (753)
T 3jro_A 274 GDNKVTLWKENL 285 (753)
T ss_dssp SSSCEECCBCCS
T ss_pred CCCEEEEEecCC
Confidence 999999999874
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=274.09 Aligned_cols=265 Identities=10% Similarity=0.007 Sum_probs=205.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
.....|.+++|||||+++|+++.|++|+ |...+..+ .+|...|.+++|+|+| .++.+.+|+ +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l------~gh~~~v~~V~FsPdg-------~~~~~~~~~---~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI------NCNSKNLFHVKEFPLE-------FENKLDFEL---A 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC------SSBGGGTEEEEEECCC-------CCCTTTTSC---C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee------cCCCccEEEEEECCCC-------CcceEEEEe---C
Confidence 4558899999999999999999999999 65444222 5788899999999999 345444444 3
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-----CeEEEEE
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-----DVNTVCF 192 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~ 192 (409)
+........ |...|.+++|+|+|++|++++.||.|++||.++ .+..+. |.. .|.+++|
T Consensus 75 ~~~~~~~~~--------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 75 QQNGLLNSQ--------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp CSSCSSTTS--------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCceEeecC--------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE
Confidence 322222211 123699999999999999999999999999644 555566 665 4999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCc-------eeeee----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGR-------ANGVL----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+ |++++|++|+.||+|++||+. .+. .+..+ .+|...|.+++|+|+| +++++.|+.+++||+.
T Consensus 138 S-PDG~~LAsgs~DGtVkIWd~~----~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 138 N-PIESSIVVGNEDGELQFFSIR----KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp C-SSSSCEEEEETTSEEEEEECC----CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred c-CCCCEEEEEcCCCEEEEEECC----CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence 9 899999999999999999976 232 24554 5677899999999999 8889999999999997
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
..... .....+. +|. ..+.+++|+ ++.||+++ ++.|++|
T Consensus 211 ~~~~~-------------------------------~~~~tL~~~h~------~~V~svaFs--g~~LASa~-~~tIkLW 250 (588)
T 2j04_A 211 ASSHQ-------------------------------PVSRMIQNASR------RKITDLKIV--DYKVVLTC-PGYVHKI 250 (588)
T ss_dssp SSSSC-------------------------------CCEEEEECCCS------SCCCCEEEE--TTEEEEEC-SSEEEEE
T ss_pred CCccc-------------------------------cceeeeccccc------CcEEEEEEE--CCEEEEEe-CCeEEEE
Confidence 73210 0122332 343 223455677 58899887 6999999
Q ss_pred EccCCceEEEeccCCcceeeeEE--ecCcCeEEeecCCCeEEEEecC
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCW--HPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
|+.+++......+|...|.+++| +|++..|++++.||+ ++|...
T Consensus 251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99888774444479999999999 999999999999999 999986
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=263.08 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=209.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w 112 (409)
..+.+|.+.|++++|+|||++||+|+.++ ++||+++........ .. ..+..+++.++++.+ ++++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM----RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC----SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec----CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 35688999999999999999999998775 789999876443321 11 147778888888877 456778999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~ 191 (409)
|..+++...... +..+|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 87 d~~~~~~~~~~~----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 87 DDVKKQDVSRIK----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp ETTTTEEEEEEE----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCCCcEEEEEE----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 998876543222 12269999998764 4443 4889999999988 66665554 455666
Q ss_pred EeCCCCcEEEE--eeCCCeEEEeccccccc----CC-------ce-eeeeeccccceeEEEEcCCCCeEEEEeCCCc-EE
Q 015301 192 FADETGHLIFS--GSDDSLCKVWDRRCFIS----KG-------RA-NGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TK 256 (409)
Q Consensus 192 ~~~~~~~~l~~--~~~dg~i~iwd~~~~~~----~~-------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~ 256 (409)
++ + .+++. |+.||.|++||++.... .. .+ ...+.+|...|.+++|+|++++|++++.|++ |+
T Consensus 145 ~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 77 4 55555 68999999999862110 00 11 6778899999999999999999999999998 99
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-c-ccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-G-HSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
+||+++ +..+..+. + |. ..+.+++|+|++++|++++.|
T Consensus 222 iwd~~~----------------------------------~~~~~~~~~g~h~------~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 222 VFKTED----------------------------------GVLVREFRRGLDR------ADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEETTT----------------------------------CCEEEEEECTTCC------SCEEEEEECTTSCEEEEEETT
T ss_pred EEECCC----------------------------------CcEEEEEEcCCCC------CcEEEEEECCCCCEEEEEECC
Confidence 999987 34555665 3 44 345677899999999999999
Q ss_pred CeEEEEEccCCce--EEEec---------------------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQ--VAKLD---------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~--~~~~~---------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.|++||+..+.. ...+. .+..+...++|++++++|++++.||.+++|++...++.
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 9999999976531 11111 11223467899999999999999999999999765543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=271.48 Aligned_cols=263 Identities=17% Similarity=0.269 Sum_probs=208.2
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-EL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 157 (409)
....|.+.|++++|+|+ +.+|++++.+|.|++|++.+......... .......+ .+|...|.+++|+|++. +|
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~----~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG-ECQPDLRL----RGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC-CCCCSEEE----ECCSSCCCCEEECTTSTTEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc-cCCCcEEe----cCCCCCeEEEEeCCCCCCeE
Confidence 34557779999999997 78999999999999999976321110000 00000001 14566799999999988 99
Q ss_pred EEEEecCeEEEEECCCCee-------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc
Q 015301 158 VAAGSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
++|+.||.|++||+.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||++... .......+..|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecC
Confidence 9999999999999987322 455678999999999995588999999999999999987311 12566667789
Q ss_pred ccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 231 LEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 231 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
...|++++|+|++. ++++++.||.|++||+++.. ..+..+..|.
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~-- 321 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHK-- 321 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCS--
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCC--
Confidence 99999999999987 68899999999999998732 2345555554
Q ss_pred eeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEccC--------------CceEEEeccCCcceeeeEEecCcC-eEEee
Q 015301 310 RTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVS--------------GAQVAKLDFHNAPVRDCCWHPIYP-MLISS 373 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 373 (409)
..+.+++|+|+++ +|++++.||.|+|||+.. .+.+..+.+|...|++++|+|+++ +|+++
T Consensus 322 ----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 322 ----DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp ----SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred ----CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 3355678999885 799999999999999987 367788889999999999999999 89999
Q ss_pred cCCCeEEEEecCCC
Q 015301 374 SWDCNIVRWEIPGI 387 (409)
Q Consensus 374 ~~dg~i~iw~~~~~ 387 (409)
+.||.|++|++...
T Consensus 398 s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 398 SEDNIMQVWQMAEN 411 (430)
T ss_dssp ETTSEEEEEEECHH
T ss_pred ECCCCEEEeEcccc
Confidence 99999999999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=275.45 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=204.2
Q ss_pred ceeeEEec-CceeEeeccc---eEEEEeeecCCCc--eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 4 GREVNYSG-RGRFSAADSC---HVLSRYLPVNGPW--KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~-dg~~~~~~~~---~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.||+|+| ++.++++++. ..+|++....... .+.+|.+.|++++|+| ++++|++|+.||+|++||++++ ...
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-cee
Confidence 57999999 4567777543 4555544333333 4568999999999998 6899999999999999999876 333
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ- 155 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 155 (409)
.......+...+.+++|+|++++|++|+.||.|++||+....... ...|...|.+++|+|+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----------------LRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCC----------------SBCCSSCEEEEEECTTCSS
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEE----------------EecccceEEeeeecCCCce
Confidence 444444555568899999999999999999999999986543211 124566899999999876
Q ss_pred eEEEEEecCeEEEEECCCCeeeeE---EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLR---IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
+|++++.|+.|++||+.+.+.... ..+|...|++++|+ +++.+|++++.||.|++||++ .+.....+..|..
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~----~~~~~~~~~~~~~ 339 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPH 339 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESS----SSSSEEEECCCCC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECC----CCccceEEecccc
Confidence 677899999999999988765443 35799999999999 899999999999999999976 4444444444432
Q ss_pred ------ceeEEEEcCCCCeEEEEe------------CCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 233 ------GITFIDSRRDGRYFISNG------------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 233 ------~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.+....|+|++..+++++ .++.|++||..++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------------------------------- 388 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG------------------------------- 388 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-------------------------------
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-------------------------------
Confidence 123445666666666553 2357999998773
Q ss_pred cCccceeeee-cccceeeeeEEEEee-eecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 295 PHDQSLATYK-GHSVLRTLIRCYFSP-EYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
..+..+. +|.. .+.++ +|+|+|++|++|+ |+.|+||++++++..
T Consensus 389 ---~~~~~l~~~~~~------~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 389 ---KMMCQLYDPESS------GISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ---CEEEEECCSSCC------CCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ---cEEEEEeCCCCC------cEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3333332 2321 11222 5899999999886 789999999988753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=257.91 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=221.9
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++| |++.++++++. ..+|..........+..|.+.|.+++|+|++++|++++.||.|++|++..........
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 3578999 88877777554 3455543334445788999999999999999999999999999999998764333344
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 158 (409)
....|...|.+++| ++++|++++.||.|++|| ..+..... ..|..++.+++|.| ++++++
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL---------------QAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE---------------ECCSSCEEEEEEEETTTTEEE
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec---------------ccCCCceeEEEEccCCCCEEE
Confidence 45667789999999 578999999999999999 22211111 12445799999998 899999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+++.|+.|++|| ..+....+.. |...+.+++|+ +++. +++++.||.|++||++ .+..+..+..|...|.++
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~ 231 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMH----TGDVLRTYEGHESFVYCI 231 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEE
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECC----chhhhhhhhcCCceEEEE
Confidence 999999999999 4566667766 99999999999 6776 9999999999999975 677888889999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++ .|++++.||.|++||+++ +..+..+..+. ..+.
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~----------------------------------~~~~~~~~~~~------~~i~ 270 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKEN----------------------------------GSLKQVITLPA------ISIW 270 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTT----------------------------------CCEEEEEECSS------SCEE
T ss_pred EEecCC-CEEEEecCCEEEEEECCC----------------------------------CceeEEEeccC------ceEE
Confidence 999999 699999999999999987 34455555554 2355
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
+++|+|+++ +++++.||.|++||+++++.+....
T Consensus 271 ~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 271 SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 678999998 6678999999999999887655443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=264.78 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=210.4
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 46 SQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
..+.+++.+|++|+.||+|++||+.++..+.... ...|.++.|+|+ +++++.|+.|++|+............
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 3455688999999999999999999886655443 236788889988 99999999999998875321111000
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.. .+......|..+|.+++|+| +++++++++.|+.|++||+++++...... .|...+.+++|+ |++.+|++
T Consensus 114 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~las 187 (343)
T 3lrv_A 114 NK-----VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLAL 187 (343)
T ss_dssp CC-----EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEE
T ss_pred cc-----eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEE
Confidence 00 01111123445799999999 99999999999999999999998876663 456689999999 89999999
Q ss_pred eeCCCeEEEecccccccCCcee-eeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 203 GSDDSLCKVWDRRCFISKGRAN-GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
|+.||.|++||++ .+... ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++......
T Consensus 188 g~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------------ 250 (343)
T 3lrv_A 188 YSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------------ 250 (343)
T ss_dssp ECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------------
T ss_pred EcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------------
Confidence 9999999999986 44544 56666 999999999999999999999 55999999988432211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCccee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
+..+..+...... .+++|+|++++|++++. |+.|++|++.+....... .++.
T Consensus 251 -------------------~~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~ 303 (343)
T 3lrv_A 251 -------------------YPTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEES 303 (343)
T ss_dssp -------------------SCCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEE
T ss_pred -------------------ecccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCce
Confidence 1111111111110 34689999999999998 999999999766543333 5778
Q ss_pred eeEEec---CcCeEEeecCCCeEEEEecCC
Q 015301 360 DCCWHP---IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 360 ~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.++|++ +.+.|++++.||.+.++-...
T Consensus 304 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 304 ALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred eEecCccccccceeEEEecCCceEEEEecC
Confidence 889998 888999999999999886543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=262.95 Aligned_cols=317 Identities=18% Similarity=0.251 Sum_probs=211.5
Q ss_pred cceeeEEec-CceeEeeccc---eEEEEeeecCCCceee-------------cCCCCeEEEEECC-CCCEEEEEeCCCcE
Q 015301 3 VGREVNYSG-RGRFSAADSC---HVLSRYLPVNGPWKVD-------------GMNSRVYTSQFSN-DGSFFVAASQESNI 64 (409)
Q Consensus 3 ~~~~~~~s~-dg~~~~~~~~---~~~~~~~~~~~~~~l~-------------~h~~~v~~~~~s~-~~~~l~t~~~d~~i 64 (409)
.+.+++|+| ++.++++++. ..+|..........+. +|...|.+++|+| ++.+|++++.||.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 357899999 9998887553 3455544444333332 6999999999999 77899999999999
Q ss_pred EEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc
Q 015301 65 KVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED 141 (409)
Q Consensus 65 ~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (409)
++||+.++....... +...+.++.|+|. +.++++++.++.|++||+.+++...... .|
T Consensus 125 ~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------~~ 185 (408)
T 4a11_B 125 KVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---------------GH 185 (408)
T ss_dssp EEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---------------CC
T ss_pred EEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---------------CC
Confidence 999999885554432 3447899999885 4599999999999999998775432211 34
Q ss_pred ceeeEEEEEcCCCCe-EEEEEecCeEEEEECCCCe-eeeEE---------------cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 142 EFGIFSVKFSTDGQE-LVAAGSDNFIYVYDLQANK-CSLRI---------------PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
...|.+++|+|++++ |++++.||.|++||++++. .+..+ ..|...|.+++|+ +++++|++++
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 264 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTVG 264 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEEEE
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEEec
Confidence 557999999999984 8899999999999998765 33333 5688999999999 8999999999
Q ss_pred CCCeEEEecccccccCCceeeeeecc-----ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.||.|++||++ .+........+ ...+........+..+++++.|+.|++||+.+
T Consensus 265 ~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------------- 323 (408)
T 4a11_B 265 TDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS----------------- 323 (408)
T ss_dssp TTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-----------------
T ss_pred CCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-----------------
Confidence 99999999986 33332222211 12222222333456677888899999999987
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
+..+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++++.....+...
T Consensus 324 -----------------~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-- 378 (408)
T 4a11_B 324 -----------------GEQITMLKGHY------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-- 378 (408)
T ss_dssp -----------------CCEEEEECCCS------SCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred -----------------CcceeeeccCC------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--
Confidence 45566666666 23456689999999999999999999999999887665543322
Q ss_pred eeEEecC-cCeEEeecCCCeEEEEecCC
Q 015301 360 DCCWHPI-YPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 360 ~~~~s~~-~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+.+. ...+.+++.|+.+++|+.+.
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred -cccccccceeecccCccCceeecCCcc
Confidence 233332 33556677899999998764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=269.90 Aligned_cols=249 Identities=15% Similarity=0.175 Sum_probs=192.6
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecC-----------CCceeecCC------------CCeEEEEECCCC--CE
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVN-----------GPWKVDGMN------------SRVYTSQFSNDG--SF 54 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~-----------~~~~l~~h~------------~~v~~~~~s~~~--~~ 54 (409)
.+.+++|||||.++++++.. .+|...... ....+.+|. +.|++++|+|++ .+
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 35789999999999886543 444443322 134788998 889999999998 79
Q ss_pred EEEEeCCCcEEEEEcCCCeeeee-------------------------------------eeecccccceEEEEEeCCCC
Q 015301 55 FVAASQESNIKVYNVDKNWKIQK-------------------------------------DIETKALRWTITDTSLSPDQ 97 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~-------------------------------------~~~~~~~~~~v~~~~~s~~~ 97 (409)
|++++.|++|++|++.++..... .....+|...|.+++|+|++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 99999999999999876432100 01135688899999999999
Q ss_pred cEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCe
Q 015301 98 RFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 175 (409)
++|+++ .|+.|++||+.+... ....... ......|...|.+++|+|++ ++|++++.||.|++||+++++
T Consensus 190 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEITDRSFNIVDIK--------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp SEEEEE-CSSEEEEEETTEEEEEEEEEECC--------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred CEEEEe-CCCeEEEEECCCCCceeeeeecc--------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999998 799999999984322 1111000 00122456689999999998 999999999999999999988
Q ss_pred e----eeEEcCCCC------------CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc------
Q 015301 176 C----SLRIPAHKS------------DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG------ 233 (409)
Q Consensus 176 ~----~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------ 233 (409)
. +..+..|.. .|.+++|+ +++.+|++++. +.|++||++. .+..+..+..|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNM---ENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTC---CSSCSCCEESCGGGTTTHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCC---Cccccceeeccccccccccc
Confidence 6 677888876 89999999 79999999998 9999999861 26667777777542
Q ss_pred ---------eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 234 ---------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 234 ---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+..++|+|++++|++++.||.|++||+.+...
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23489999999999999999999999988654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=269.70 Aligned_cols=265 Identities=11% Similarity=0.072 Sum_probs=181.1
Q ss_pred EEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--------CCCeEEEEE
Q 015301 90 DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--------DGQELVAAG 161 (409)
Q Consensus 90 ~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~ 161 (409)
...+.+++.+|++++.|++|++||..+++..... ......+|...|++++|+| ++++|++++
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~----------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQH----------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------eecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3344556778999999999999999877543221 1123357888999999998 789999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce------------------
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA------------------ 223 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------ 223 (409)
.|++|+|||+.++..+..+..|..+|.+++|+|.+.++|++++.||+|++||++........
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999988888888899999999999555578999999999999998632111100
Q ss_pred ---eeeeeccccceeEEEEc-CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 224 ---NGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 224 ---~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
.....+|...+.++.|+ |+++.|++++.|+.+++||+............. ......... ..
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~----~~~~~~~~~-----------~~ 308 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST----MKLGPKNLL-----------PN 308 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCS-----------CS
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec----CccccEEEc-----------cc
Confidence 11124577788999986 799999999999999999998754332221100 000000000 00
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
......+. ......+.+ .+++.++++|+.||.|++||+.+++.+..+..|..+|.+++|+|||++||+++.|| +
T Consensus 309 ~~~~~~~~---~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 309 VQGISLFP---SLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp EEEECSSC---CSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred cccccccC---cceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 01111111 111111111 22556778889999999999999999888888999999999999999999998765 5
Q ss_pred EEEecC
Q 015301 380 VRWEIP 385 (409)
Q Consensus 380 ~iw~~~ 385 (409)
.+|++.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 566553
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=244.09 Aligned_cols=278 Identities=13% Similarity=0.220 Sum_probs=214.5
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCce--eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
++|+||+++...++ +....+|+....+.... +.+|...|++++|+|++++||+|+.||+|++|++++++.+...
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~--- 105 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--- 105 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---
Confidence 67999999844333 33344555433333333 4578889999999999999999999999999999998665543
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|...+.++.+ ++..+++++.++.+++|+........... .+|...+..+.+++++++|++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL--------------SGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE--------------ECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE--------------cCccCceEEEEEcCCCCEEEEEe
Confidence 445556766554 56799999999999999987664321111 13455799999999999999999
Q ss_pred ecCeEEEEECCCCee----eeEEcCCCCCeEEEEEeCCCCcEE--EEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 162 SDNFIYVYDLQANKC----SLRIPAHKSDVNTVCFADETGHLI--FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.|+.|++||+.+++. ......|...|.+++++|.+...+ ++++.++.|++||.+ .... .....+...+.
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~-~~~~~~~~~v~ 244 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGAC-LSAVDAHSQVC 244 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----TCCE-EEEEECSSCEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----cccc-cccccceeeee
Confidence 999999999987653 344567889999999996566655 456788999999964 3333 33445777899
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 236 FIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
.+.|+|++..+++++ .|+.|++||+++ ++.+..+.+|.
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----------------------------------~~~~~~l~gH~------ 284 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHT------ 284 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCS------
T ss_pred eeeecccccceEEEEEcCCCEEEEEECCC----------------------------------CcEEEEEcCCC------
Confidence 999999999887754 799999999987 46677788887
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+.+++|+|++++|++|+.||+|+|||+.+..
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 345677899999999999999999999997654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=259.97 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=216.6
Q ss_pred ceeeEEecCceeEe-e---ccceEEEEeeec----CCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRGRFSA-A---DSCHVLSRYLPV----NGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~-~---~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
.+.++++|+...+. + ++...++.+... .....+.+|.+.|++++|+| ++++|++|+.||+|++|++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34678888876443 2 233444543222 23346889999999999999 999999999999999999988732
Q ss_pred e----eeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 75 I----QKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 75 ~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .......+|...|.+++|+|++ ++|++++.|+.|++||+.+++...... ...|...|.+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~~~v~~~~ 183 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------PDVHPDTIYSVD 183 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------TTTCCSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------cCCCCCceEEEE
Confidence 1 1223345677799999999998 699999999999999998875432221 013455799999
Q ss_pred EcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCC-eEEEEEeCCCCcEEEEe---eCCCeEEEecccccccCCcee
Q 015301 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD-VNTVCFADETGHLIFSG---SDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 150 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~ 224 (409)
|+|++++|++++.|+.|++||+++++.+..+ ..|... +.+++|+ +++.+|++| +.|+.|++||++.. .....
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~--~~~~~ 260 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHL--EEPLS 260 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBC--SSCSE
T ss_pred ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccc--cCCce
Confidence 9999999999999999999999999999888 788776 8999999 789999999 79999999998621 11111
Q ss_pred eeeeccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 225 GVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.....|...+.+++|+|++++|++ ++.||.|++||+.+... .+..+
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---------------------------------~~~~l 307 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---------------------------------FLHYL 307 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---------------------------------CEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---------------------------------ceEee
Confidence 222356778999999999999865 55799999999987321 12333
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
..+... ..+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 308 ~~~~~~----~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 308 SMFSSK----ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECCS----SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cccccC----CcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 332211 22345678899998875 566999999988654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=282.24 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=209.7
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 158 (409)
..+|.+.|++++|+|++++|++|+.||.|++||+.++....... ..+|..+|.+++|+|+ +++|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-------------l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-------------LTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-------------ECCCSSCEEEEEECCTTSCSEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-------------ccCCcCceEEEEecCCCCCCEEE
Confidence 45688899999999999999999999999999997543221111 1246668999999987 99999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+|+.||.|++||+.+++ .+..+..|...|.+++|+ |+ ++++++|+.||.|++||++. ........+.+|...|
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~--~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCS--SSCCCCEEEECCSSCE
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeec--CCCcceeEeecCCCce
Confidence 99999999999999887 667788899999999999 66 89999999999999999872 2234455677899999
Q ss_pred eEEEEcC-------------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+| ++.++++++.||.|++||+++.... .....
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------~~~~~ 198 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 198 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc------------------------------ceeee
Confidence 9999999 5899999999999999999873211 12234
Q ss_pred eeecccceeeeeEEEEeeeecCC---CCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|+ +++|++|+.||.|++||+.+++ .+.....|...|++++|+|++++|+++
T Consensus 199 ~~~~h~------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 199 TLEGHS------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred eecCCC------CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 455555 33566789999 9999999999999999998874 334445688999999999999999999
Q ss_pred cCCCeEEEEecCCCc
Q 015301 374 SWDCNIVRWEIPGIG 388 (409)
Q Consensus 374 ~~dg~i~iw~~~~~~ 388 (409)
+.||.|++|++....
T Consensus 273 s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 273 GGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSCEECCBCCSSS
T ss_pred cCCCEEEEEecCCCC
Confidence 999999999998543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=259.77 Aligned_cols=294 Identities=19% Similarity=0.263 Sum_probs=215.7
Q ss_pred eEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 7 VNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
.++++|+.++++++. ..++..........+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+.. ...
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~ 211 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT---LIH 211 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE---ECC
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE---EcC
Confidence 355668888777553 355555444555688899999999999 789999999999999999998865544 345
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
|...|.+++|++ ..|++++.||.|++||+.++......... .+|...|.+++| +++++++|+.|
T Consensus 212 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 212 HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL------------VGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE------------CCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe------------cCCCCcEEEEEe--CCCEEEEEeCC
Confidence 677999999974 58999999999999999876543221111 245567999999 78899999999
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
|.|++||+.+++.+..+.+|...|.++++. ++++++|+.||.|++||++ .+..+..+.+|...|.+++| ++
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEC--CS
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECC----CCCEEEEEeCCcCcEEEEEe--cC
Confidence 999999999999999999999999999986 5799999999999999975 67888889999999999999 68
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
.+|++++.||.|++||+++........ ....+..+.+|... +.++++
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~~~h~~~------v~~l~~-- 393 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPA-------------------------GTLCLRTLVEHSGR------VFRLQF-- 393 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCT-------------------------TTTEEEEECCCSSC------CCCEEE--
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccc-------------------------cchheeeccCCCCC------eEEEEe--
Confidence 899999999999999987633111000 01134555666532 233445
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
++++|++|+.||.|++||+.+........ ...+...+.|.
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp CSSCEEECCSSSEEEEEC-----------------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 68899999999999999998876554433 23345555554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=252.76 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=203.1
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 159 (409)
..+|...|.+++|+|++++|++++.|+.|++|++.++.......... .|...|.+++|+|+++ +|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------------RYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------------ECSSCEEEEEEEESSSEEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------------ecCCceEEEEECCCCCcEEEE
Confidence 34677899999999999999999999999999998765211111111 3455799999999999 9999
Q ss_pred EEecCeEEEEEC-CCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----Cceeeeeeccc
Q 015301 160 AGSDNFIYVYDL-QANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHL 231 (409)
Q Consensus 160 ~~~d~~i~v~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~ 231 (409)
++.||.|++||+ .+++. ..+.. |...|.+++|+ + +++|++++.|+.|++||++..... ......+. |.
T Consensus 75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 999999999999 87754 66778 99999999999 5 899999999999999998621000 34444444 88
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC-CcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK-MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
..+.+++|+|++ +++++.|+.|++||+++ ..... ......+.
T Consensus 151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--------------------------------~~~~~~~~--- 193 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--------------------------------TIEESGLK--- 193 (342)
T ss_dssp CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--------------------------------EEEECSCS---
T ss_pred CceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--------------------------------eeeecCCC---
Confidence 999999999887 99999999999999986 32110 11111122
Q ss_pred eeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCC------ceEEEeccCCc---------ceeeeEEecCcCeEEeec
Q 015301 311 TLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSG------AQVAKLDFHNA---------PVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 311 ~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~ 374 (409)
..+.+++|+| +++++++++.||.|++|++... +....+..|.. .|.+++|+|++++|++++
T Consensus 194 ---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 194 ---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp ---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred ---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 1234667899 9999999999999999999887 77888888865 999999999999999999
Q ss_pred CCCeEEEEecCCCcc
Q 015301 375 WDCNIVRWEIPGIGE 389 (409)
Q Consensus 375 ~dg~i~iw~~~~~~~ 389 (409)
.||.|++||+.++..
T Consensus 271 ~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 271 SDGIISCWNLQTRKK 285 (342)
T ss_dssp TTSCEEEEETTTTEE
T ss_pred CCceEEEEcCccHhH
Confidence 999999999987653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=234.29 Aligned_cols=280 Identities=13% Similarity=0.133 Sum_probs=188.6
Q ss_pred eEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcC
Q 015301 43 VYTSQFSNDGS---FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVG 115 (409)
Q Consensus 43 v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~ 115 (409)
+.++-|-..|- .+++++. ..|++|+..++.+.........|..+|..+.+.||..-|+..... +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 66777755443 6777775 589999999985555666667777789999999875444332211 011111111
Q ss_pred CC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEEC-CCCeeeeEEcCCCCCeEEEE
Q 015301 116 SS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDL-QANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 116 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~ 191 (409)
.. +......... +|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+.+|...++.++
T Consensus 121 pd~~~~~~~l~s~------------g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 121 SDDESEKQVLLKS------------GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp -----CCEEEEEE------------EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCccccccEEEeC------------CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 10 0000000000 111234443 4555555533 4899999999 55888888888999999999
Q ss_pred EeC--CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc---cceeEEEEcCCCCeE------------EEEeCCCc
Q 015301 192 FAD--ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---EGITFIDSRRDGRYF------------ISNGKDQT 254 (409)
Q Consensus 192 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~ 254 (409)
|+| .++.+|++++.|++|+|||++ +++.+..+.+|. ..+.+++|+|+|.++ ++|+.|++
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 983 277999999999999999975 788888887654 357777999999876 56778999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee-----ecccceeeeeEEEEeeeecCCCCEEE
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-----KGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
|++||..+... +..+ .+|... ..+..+ ++.+++
T Consensus 262 IklWd~~tgk~----------------------------------l~v~~~~~p~Gh~~~------~lsg~~--sg~~lA 299 (356)
T 2w18_A 262 LIVINPKTTLS----------------------------------VGVMLYCLPPGQAGR------FLEGDV--KDHCAA 299 (356)
T ss_dssp EEEEETTTTEE----------------------------------EEEEEECCCTTCCCC------EEEEEE--ETTEEE
T ss_pred EEEEECCCCEE----------------------------------EEEEEeeccCCCcce------eEcccc--CCCEEE
Confidence 99999887332 2111 122211 112222 277899
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCccee-eeEEecCcCeEEeecCCCeEEEEec
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+|+.|++|+|||+.+++++.++++|...+. .++|+||+++|++|+.|++|++||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999999999987665 5899999999999999999999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=249.46 Aligned_cols=302 Identities=14% Similarity=0.149 Sum_probs=205.8
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCC----CceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNG----PWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNW 73 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~----~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~ 73 (409)
.+.+++|+|+|+++++++.. .+|....... ...+.+|...|++++|+| ++++|++++.||.|++||+.++.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 36789999999988886543 4454433322 235679999999999999 69999999999999999998763
Q ss_pred e------eeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 K------IQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ~------~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
. .........|...|.+++|+|+ +++|++++.||.|++||+.+++............. .......+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 170 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV--LSIPPANHLQSD 170 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES--CSCCCSSCSCCC
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc--cccccCCcccce
Confidence 1 1223345567779999999999 99999999999999999998876544443322222 112223566789
Q ss_pred EEEEEcCC---CCeEEEEEecCeEEEEECCCCee--eeEEcCCCCCeEEEEEeCCCC----cEEEEeeCCCeEEEecccc
Q 015301 146 FSVKFSTD---GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVNTVCFADETG----HLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 146 ~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~ 216 (409)
.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|.+++|+ +++ ++|++++.||.|++||++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~- 248 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKIT- 248 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEE-
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCC-
Confidence 99999997 89999999999998888877765 66678899999999999 666 899999999999999986
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC----CCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
..........+..........+....+..+.. ...+.+|+...
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 295 (351)
T 3f3f_A 249 ---EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ------------------------------ 295 (351)
T ss_dssp ---ECC---------------------------------------CCSEE------------------------------
T ss_pred ---CCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc------------------------------
Confidence 22222223333333333444444433333332 23344444332
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
...+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 296 ----~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 296 ----VELLSEHDDHN------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----EEEEEEECTTS------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ----ccEEEEEeccc------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 24455666665 33566789999999999999999999999988655444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=256.42 Aligned_cols=274 Identities=16% Similarity=0.231 Sum_probs=208.6
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCC-------eeeeeeeecccccceEEEEEeCCCCc-EEEEEec
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQR-FLVYASI 105 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 105 (409)
...+|.+.|++++|+|+ +.+||+++.||.|++|++... ...........|...|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45689999999999997 689999999999999999762 11223334456777999999999988 9999999
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC---eeeeEEc
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN---KCSLRIP 181 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 181 (409)
||.|++|++..+........ .......|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVID--------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEE--------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred CCeEEEEeCCCCCCCCceec--------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 99999999987432111000 0001124566899999999 7788999999999999999987 5677788
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-eEEEEeCCCcEEEeeC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDI 260 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 260 (409)
.|...|++++|+|....+|++|+.||.|++||++. ....+..+..|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 89999999999944445899999999999999872 2456777888999999999999985 6899999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i 339 (409)
+.......... ........+..+.+|. ..+..++|+|+++ +|++++.||.|+|
T Consensus 352 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~------~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 352 SKIGEEQSTED--------------------AEDGPPELLFIHGGHT------AKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp GGTTCCCCHHH--------------------HHHCCTTEEEECCCCS------SCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred CCCccccCccc--------------------cccCCcceEEEcCCCC------CCceEEEECCCCCCEEEEEECCCCEEE
Confidence 87332111000 0000012344444554 2345668999999 9999999999999
Q ss_pred EEccCC
Q 015301 340 YDLVSG 345 (409)
Q Consensus 340 ~d~~~~ 345 (409)
|++...
T Consensus 406 w~~~~~ 411 (430)
T 2xyi_A 406 WQMAEN 411 (430)
T ss_dssp EEECHH
T ss_pred eEcccc
Confidence 998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=249.56 Aligned_cols=283 Identities=11% Similarity=0.092 Sum_probs=222.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee--ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
...+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3456799999988888888889999999999886553221 23467778999999999999999999999999999876
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
+...... .|...+.+++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.+++|+ ++
T Consensus 202 ~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~-~~ 264 (433)
T 3bws_A 202 AYKATVD---------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS-KD 264 (433)
T ss_dssp CEEEEEE---------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC-TT
T ss_pred eEEEEEc---------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc-CC
Confidence 5432221 2233689999999999886555 6899999999999988877654 558999999 78
Q ss_pred CcEEEEee--------CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCcccc
Q 015301 197 GHLIFSGS--------DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 197 ~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 267 (409)
++.+++++ .||.|++||++ .++....+ .|...+.+++|+|+++.+ ++++.|+.|++||+++.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---- 335 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---- 335 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence 88888887 48899999975 44444433 566788999999999755 56688999999999862
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--------------
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-------------- 333 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------------- 333 (409)
+.+..+... ..+..++++|++++|++++.
T Consensus 336 ------------------------------~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 336 ------------------------------KVQKSIPVF-------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp ------------------------------EEEEEEECS-------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ------------------------------cEEEEecCC-------CCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 222222211 11345689999999888876
Q ss_pred -CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecCC
Q 015301 334 -DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 386 (409)
Q Consensus 334 -dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 386 (409)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++ .|+.|++|+++.
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988875 45789999999999988776 499999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=248.37 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=169.4
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
+|.+.|++++|+|++++| ++++.||.|++|++. ++..+... ....+...|.+++|+|++++|++++.+|.+++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 466689999999999996 899999999999998 66444433 22345568999999999999999999999999999
Q ss_pred CCCcccc-ccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEE
Q 015301 115 GSSARES-LANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNT 189 (409)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~ 189 (409)
.+..... ..... .+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+.. +.+|...|.+
T Consensus 179 ~~~~~~~~~~~~~------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 179 NSIPEEKFTQEPI------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp TSCCCSSCCCCCS------------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred CCcccccccceee------------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 8766432 11111 134557999999999 99999999999999999999988877 5689999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------------------------cccceeEEEEcCCCC
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------------------------HLEGITFIDSRRDGR 244 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~ 244 (409)
++|+ ++.+|++++.|+.|++||++ .++.+..+.. ....|..++|+|+++
T Consensus 247 ~~~s--d~~~l~s~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 247 ICCG--KDYLLLSAGGDDKIFAWDWK----TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEEC--STTEEEEEESSSEEEEEETT----TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred EEEC--CCCEEEEEeCCCeEEEEECC----CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9998 89999999999999999976 5555555542 235689999999999
Q ss_pred eEEEEe-CCCcEEEeeC
Q 015301 245 YFISNG-KDQTTKLWDI 260 (409)
Q Consensus 245 ~l~~~~-~dg~i~iwd~ 260 (409)
+|++++ .|+.|++|++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 999998 8999999999
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=239.31 Aligned_cols=268 Identities=14% Similarity=0.088 Sum_probs=210.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
.++++++.|+.|++||+.+++...... . + ..+.+++|+|++++| ++++.|+.|++||+.+++.......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~--~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP-V--G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------ 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-C--S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee-c--C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC------
Confidence 467888999999999999886554432 2 2 258999999999987 5666899999999988765332221
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i 209 (409)
...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+ ++++.+ ++++.++.|
T Consensus 73 ----------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 73 ----------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTV 140 (391)
T ss_dssp ----------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred ----------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC-CCCCEEEEEeCCCCEE
Confidence 11589999999999886655 5699999999999988877754 578999999 777766 788889999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
++||++ .++....+..+ ..+..++|+|+++++ ++++.++.|++||+++.
T Consensus 141 ~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------- 190 (391)
T 1l0q_A 141 SVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------- 190 (391)
T ss_dssp EEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-------------------------
T ss_pred EEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-------------------------
Confidence 999975 56666666554 456899999999987 56778899999999873
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+..+..+ .....++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|
T Consensus 191 ---------~~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 191 ---------SVIDTVKVE-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp ---------EEEEEEECS-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred ---------eEEEEEecC-------CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 222222221 1234567999999999888 68999999999999998888765 578999999
Q ss_pred CcCeE-EeecCCCeEEEEecCCCcc
Q 015301 366 IYPML-ISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l-~s~~~dg~i~iw~~~~~~~ 389 (409)
++++| ++++.|+.|++||+.+++.
T Consensus 254 dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 254 DGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcE
Confidence 99977 6778999999999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=241.22 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=207.6
Q ss_pred cceeeEEecC---ceeEeeccce---EEEEeeecCCC--ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 3 VGREVNYSGR---GRFSAADSCH---VLSRYLPVNGP--WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 3 ~~~~~~~s~d---g~~~~~~~~~---~~~~~~~~~~~--~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
.+.+++|+|+ |.++++++.. .+|........ ..+.+|.+.|++++|+|++++|++++.||.|++||+.++..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 3579999999 5888876543 34444331222 47789999999999999999999999999999999998854
Q ss_pred eeeeeecccccceEEEEEe--CCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC
Q 015301 75 IQKDIETKALRWTITDTSL--SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 152 (409)
.. ...|...|.+++| +|++++|++++.||.|++||+.+++........ ..+.++.+.+
T Consensus 121 ~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------~~~~~~~~~~ 180 (368)
T 3mmy_A 121 IQ----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------------ERCYCADVIY 180 (368)
T ss_dssp EE----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS----------------SCEEEEEEET
T ss_pred ee----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC----------------CCceEEEecC
Confidence 43 3346678999999 999999999999999999999887653332211 1366666654
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCc----EEEEeeCCCeEEEecccccccCC-ceee
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGH----LIFSGSDDSLCKVWDRRCFISKG-RANG 225 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~-~~~~ 225 (409)
..+++++.++.+.+|++......... ..+...+.++++. ++.. .+++++.||.|++||++.. .. ....
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~ 255 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPP--NPAKDNF 255 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEESSCS--CHHHHSE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEecCCC--Cccccce
Confidence 47888999999999999876544332 2344556666665 3333 3999999999999998621 11 4455
Q ss_pred eeecccc------------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 226 VLMGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 226 ~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+..|.. .|.+++|+|++++|++++.||.|++||+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~------------------------------- 304 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA------------------------------- 304 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-------------------------------
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC-------------------------------
Confidence 6666665 799999999999999999999999999987
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
+..+..+.+|. ..+.+++|+|++++|++++.|+..+.|++
T Consensus 305 ---~~~~~~~~~~~------~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 305 ---RTKLKTSEQLD------QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---TEEEEECCCCS------SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ---CcEEEEecCCC------CCceEEEECCCCCeEEEEecccccccccc
Confidence 34455566555 33556789999999999999876555544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=236.22 Aligned_cols=295 Identities=11% Similarity=0.092 Sum_probs=202.8
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++++|||||.+++++....+..+...........+...+..+++.++++.+ ++++.|++|++||..++..+... .
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~- 98 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-K- 98 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-E-
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-E-
Confidence 35799999999998887655433222222222333333468899999998887 46778899999999998665543 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE-
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA- 159 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 159 (409)
+...|.+++|+++. ++++ .++.|++||+.+. +....... +...+++++ .++++
T Consensus 99 --~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------------------~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 99 --VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------------------FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp --CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------------------EEEEEEEET--TEEEEE
T ss_pred --CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------------------CCceEEEEc--cEEEEe
Confidence 34489999999764 4433 4789999999887 33222211 133455666 56666
Q ss_pred -EEecCeEEEEECCCCe----------------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe-EEEecccccccCC
Q 015301 160 -AGSDNFIYVYDLQANK----------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKG 221 (409)
Q Consensus 160 -~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 221 (409)
|+.+|.|++||+.+++ .+..+.+|...|.+++|+ |++++|++++.||+ |++||++ .+
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~----~~ 228 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTE----DG 228 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETT----TC
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECC----CC
Confidence 5789999999998765 267789999999999999 79999999999998 9999975 67
Q ss_pred ceeeeee-c-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 222 RANGVLM-G-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 222 ~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
..+..+. + |...|.+++|+|++++|++++.|+.|++||++........... .. . .+. .. .....
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~--~~-~------~~~----~~-~~~~~ 294 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK--GW-I------NMK----YF-QSEWS 294 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT--TT-E------ECC----CC-CCSSC
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc--ce-e------ecc----cc-ccccc
Confidence 7788887 5 9999999999999999999999999999999874322111000 00 0 000 00 00000
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
...+.-..... .....++|++++++|++++.||.+++|++..++
T Consensus 295 ~~~~~~~~~~~---~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 295 LCNFKLSVDKH---VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEECCCCTT---CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eeEEEeccCCC---CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000000000 001234789999999999999999999986543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=232.92 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=215.0
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
.+.+| ..+.+++|+|+|+++ ++++.|+.|++||+.+++...... .. ..+.+++|+|++++|++++ .++.|++|
T Consensus 27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-~~---~~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AG---SSPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CS---SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-CC---CCccceEECCCCCEEEEEECCCCEEEEE
Confidence 45555 458999999999987 677789999999999886554432 22 2799999999999886554 67999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|+.+++....... ...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++
T Consensus 102 d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 102 DTTSNTVAGTVKT----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA 164 (391)
T ss_dssp ETTTTEEEEEEEC----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred ECCCCeEEEEEeC----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence 9988765332211 1248899999999987 67777999999999999988888765 5679999
Q ss_pred EeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---CCCcEEEeeCCCCcccc
Q 015301 192 FADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG---KDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 192 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 267 (409)
|+ ++++.+ ++++.++.|++||++ .+.....+. +...+.+++|+|+++++++++ .++.|++||+++.
T Consensus 165 ~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---- 234 (391)
T 1l0q_A 165 VT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---- 234 (391)
T ss_dssp EC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----
T ss_pred EC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC----
Confidence 99 677666 677889999999975 455554443 566789999999999999888 6899999999872
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE-EEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI-YTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~v~i~d~~~~~ 346 (409)
+.+..+..+.. ...++++|++++| ++++.|+.|++||+.+++
T Consensus 235 ------------------------------~~~~~~~~~~~-------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 235 ------------------------------KITARIPVGPD-------PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp ------------------------------EEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------------eEEEEEecCCC-------ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 33344443331 2456789999877 566889999999999999
Q ss_pred eEEEeccCCccee---ee------------EEecCc----------CeEEeecCCCeEEEEecCCCcc
Q 015301 347 QVAKLDFHNAPVR---DC------------CWHPIY----------PMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 347 ~~~~~~~~~~~v~---~~------------~~s~~~----------~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+..+..|..+.. .+ .|+.+. -.+...+.|..+++|++..+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9888876655421 11 222221 2456667789999999976653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=241.34 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=166.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee--eeeecccccceEEEEEeCC--------CCcEEEEEecCCEEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSP--------DQRFLVYASICAIVN 110 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~ 110 (409)
..+....+++++.+||+++.|++|+|||.+++.... ......+|...|++++|+| |+++||+++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 333344445566789999999999999999885443 2334678999999999998 789999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeE----------
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLR---------- 179 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~---------- 179 (409)
+||+.++....... .|..++.+++|+|++. +|++++.|+.|++||+.+++....
T Consensus 170 ~Wd~~~~~~~~~~~---------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 170 IWRLTDEGPILAGY---------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEETTEEEEEEE---------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred EEECCCCceeeeec---------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 99997765322111 2344799999999874 799999999999999987754322
Q ss_pred ---------------EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE-------
Q 015301 180 ---------------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------- 237 (409)
Q Consensus 180 ---------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~------- 237 (409)
..+|...+.++.|+++++..|++++.|+.+++||++ .......+..|...+..+
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEE
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEEEccccc
Confidence 235778899999988899999999999999999975 333333333333333222
Q ss_pred -----------EEcC--CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 238 -----------DSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 238 -----------~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.++| ++.++++++.||.|++||+.+. .......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~----------------------------------~~~~~~~ 356 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK----------------------------------DSNSIPI 356 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT----------------------------------TCCEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC----------------------------------cEEEEec
Confidence 2333 3345677888999999999873 3333444
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
+|. ..+.+++|+|||++||+++.+| +.+|.+.
T Consensus 357 ~~~------~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 357 QLG------MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECS------SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCC------CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 443 2356779999999999998776 6666653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=236.59 Aligned_cols=232 Identities=7% Similarity=-0.012 Sum_probs=179.9
Q ss_pred EeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 92 SLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 92 ~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
.+.+++..|++|+.||.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----------------TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 455688999999999999999998876543322 114777888887 899999999999966
Q ss_pred C---------CCeeeeEEc-CCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEE
Q 015301 172 Q---------ANKCSLRIP-AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFID 238 (409)
Q Consensus 172 ~---------~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~ 238 (409)
. +++.+..+. .|..+|.+++|+ | +++++++++.||.|++||++ .+...... ..|...+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCEEE
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEEEE
Confidence 5 444444443 677899999999 7 89999999999999999976 45554444 34556899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce-eeeec-ccceeeeeEEE
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-ATYKG-HSVLRTLIRCY 316 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 316 (409)
|+|++.+|++|+.||.|++||+++.. .+ ..+.. |. ..+
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~----------------------------------~~~~~~~~~h~------~~v 217 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPD----------------------------------QASSRFPVDEE------AKI 217 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTT----------------------------------SCCEECCCCTT------SCE
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCC----------------------------------CCccEEeccCC------CCE
Confidence 99999999999999999999998832 22 34444 54 345
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---CCccee--eeEEecCcCeEEeecC-CCeEEEEecCCCcc
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAPVR--DCCWHPIYPMLISSSW-DCNIVRWEIPGIGE 389 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 389 (409)
.+++|+|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++....+
T Consensus 218 ~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 218 KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 5678999999999999 55999999999887665543 444555 5999999999999888 99999999976543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=232.14 Aligned_cols=291 Identities=12% Similarity=0.032 Sum_probs=214.4
Q ss_pred CCCCeEEEE---ECCCCCEEEEEe--------------CCCcEEEEEcCC--CeeeeeeeecccccceEEEEEeCCCCcE
Q 015301 39 MNSRVYTSQ---FSNDGSFFVAAS--------------QESNIKVYNVDK--NWKIQKDIETKALRWTITDTSLSPDQRF 99 (409)
Q Consensus 39 h~~~v~~~~---~s~~~~~l~t~~--------------~d~~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 99 (409)
....+..++ |+|+++.++..+ .++.+.||.++. +. ......... ...+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~-~~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKT-GFQPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEEC-SSCBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcC-CCCceEEEEeCCCeE
Confidence 445677888 888877665432 233234555433 31 111111111 224668999998788
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 179 (409)
+++++.++.|++||+.+++......... ..+|...|.+++|+++++++++++.|+.|++||+++++.+..
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEK----------YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHH----------HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCccc----------ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence 8888889999999998876543221111 013455799999999999999999999999999999999988
Q ss_pred EcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe--------
Q 015301 180 IPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-------- 250 (409)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------- 250 (409)
+..|...+.+++|+ ++++.+ ++++.|+.|++||++ .+.....+.. ...+.+++|+|+++++++++
T Consensus 207 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 207 VDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 98899999999999 677766 555589999999975 5555555554 35589999999999999888
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE-E
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI-Y 329 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~ 329 (409)
.||.|++||+++. +.+..+ .+. .....++|+|+++.+ +
T Consensus 281 ~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 281 GGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKIYV 319 (433)
T ss_dssp CCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEEEE
T ss_pred CCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEEEE
Confidence 4889999999862 112221 111 123456789999754 6
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC---------------CCeEEEEecCCCcc
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW---------------DCNIVRWEIPGIGE 389 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iw~~~~~~~ 389 (409)
+++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.
T Consensus 320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 66889999999999999888886 6778999999999998888765 57999999987543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-29 Score=223.34 Aligned_cols=334 Identities=11% Similarity=0.065 Sum_probs=231.1
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--CCCeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNV--DKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~--~~~~~~~~~~ 79 (409)
+-+++|+++++++.... .+++....+...++. +|. +.+++|+|||++|++++.|++|++||+ .++..+....
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 34578999877765433 233222222233555 443 999999999999999999999999999 6765544332
Q ss_pred ecccccceEEEEEeCC----CCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc-ceeeEEEEEcCC
Q 015301 80 ETKALRWTITDTSLSP----DQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTD 153 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~----~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 153 (409)
. ...+..++|+| +|++|++++ .+++|.+||..+.+........... .. ....| ...+..+.++|+
T Consensus 220 -~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~-~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 220 -I---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VD-TQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp -C---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SS-SCCEESCCCEEEEEECSS
T ss_pred -c---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----cC-ccccccCCceEEEEECCC
Confidence 2 23689999999 999999988 4899999999887654433221100 00 00001 125889999997
Q ss_pred CCeE-EEEEecCeEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeec
Q 015301 154 GQEL-VAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 154 ~~~l-~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
+..+ ++...++.|.+||+.+.+.+. .+. +...+.+++|+ |++++|+++ ..+++|.+||+. +++....+..
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~ 364 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDV 364 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeecc
Confidence 7655 455568999999998876544 443 56678899999 788876654 568999999965 6666666553
Q ss_pred ----cccceeEEEEcCC-CCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 230 ----HLEGITFIDSRRD-GRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 230 ----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
|.+....+ ++|+ +..++++. .|++|.+||+.+..... ...+.+..+
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------------------~~~~~v~~l 416 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------------------YAWKKVAEL 416 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------------------TBTSEEEEE
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------------------hcCeEEEEE
Confidence 54433333 4676 55666665 58999999997621100 012445666
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEe-------CCCeEEEEEccCCceE-EEe--------ccCCcceeeeEEecCc
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGS-------SDNSVYIYDLVSGAQV-AKL--------DFHNAPVRDCCWHPIY 367 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~v~i~d~~~~~~~-~~~--------~~~~~~v~~~~~s~~~ 367 (409)
.++.. ....+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|+|
T Consensus 417 ~~~g~------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 417 QGQGG------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp ECSCS------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EcCCC------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 66542 223457899999999987 2679999999999876 443 3467789999999999
Q ss_pred CeEEee-----cCCCeEEEEecCCCccc
Q 015301 368 PMLISS-----SWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 368 ~~l~s~-----~~dg~i~iw~~~~~~~~ 390 (409)
+.|+.+ +.|+.|.+||..+++..
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 977755 24799999999987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-29 Score=225.97 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=212.7
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc--CCCccccccc
Q 015301 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV--GSSARESLAN 124 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~--~~~~~~~~~~ 124 (409)
+|+|++.++++++.|++|.+||..+++.+..... ++ .+..++|+|++++|++++.|+.|++||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 3889999999999999999999999866554322 22 2889999999999999999999999999 5554322111
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC----CCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-----------CCCeE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVN 188 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~ 188 (409)
. ...+..++|+| +|+++++++. +++|.+||..+++++..+..+ ...+.
T Consensus 220 ~----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 220 I----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp C----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred c----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 0 12478999999 9999999885 899999999999998887642 23788
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 266 (409)
.+.++|..+.++++...++.|.+||+. ....+. ....+...+..+.|+|+|+++++++ .+++|.+||+.+.+
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-- 357 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-- 357 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe--
Confidence 999995566778888899999999975 222222 1223556788899999999876655 58899999998843
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe-CCCeEEEEEccC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS-SDNSVYIYDLVS 344 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~dg~v~i~d~~~ 344 (409)
.+..+.............+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 358 --------------------------------l~~~i~~g~~ph~g~g~~~---~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 358 --------------------------------LSALVDVGKTPHPGRGANF---VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp --------------------------------EEEEEECSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred --------------------------------EEEeeccCCCCCCCCCccc---CCCCCccEEEeccCCCceEEEEEeCC
Confidence 2333322110000000111 3566 66667765 589999999998
Q ss_pred -------CceEEEeccCCcceeeeEEecCcCeEEeec-------CCCeEEEEecCCCccc
Q 015301 345 -------GAQVAKLDFHNAPVRDCCWHPIYPMLISSS-------WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 345 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 390 (409)
++.+.++.+|...+..++++|++++|++++ .++.|.+||+.+.+..
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 899999999999999999999999999987 2779999999987643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=208.30 Aligned_cols=258 Identities=12% Similarity=0.073 Sum_probs=168.5
Q ss_pred ceEEEEeeec---CCCceeecCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCC---eeeeeeeecccccceEEEEE
Q 015301 21 CHVLSRYLPV---NGPWKVDGMNSRVYTSQFSNDGSFFVAAS-QE-SNIKVYNVDKN---WKIQKDIETKALRWTITDTS 92 (409)
Q Consensus 21 ~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~d-~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~ 92 (409)
...+|+.... ...+++.+|..+|..+.|.||..-|++.. .+ ..-.++.+.-. +.........+|...|..+
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l- 142 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL- 142 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-
Confidence 3344554443 33457889999999999988654333221 11 11112222111 1111112223344445544
Q ss_pred eCCCCcEEEEEe--cCCEEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeE
Q 015301 93 LSPDQRFLVYAS--ICAIVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFI 166 (409)
Q Consensus 93 ~s~~~~~l~~~~--~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i 166 (409)
++++.+.+++ .|+.|++|++.. ++...... .|...+..++|++ ++.+|++++.|++|
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~---------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF---------------LMPPEETILTFAEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE---------------ECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeec---------------cCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence 5666666643 588999999844 43222111 2333588888888 77999999999999
Q ss_pred EEEECCCCeeeeEEcCCC---CCeEEEEEeCCCCcEE------------EEeeCCCeEEEecccccccCCceeeee----
Q 015301 167 YVYDLQANKCSLRIPAHK---SDVNTVCFADETGHLI------------FSGSDDSLCKVWDRRCFISKGRANGVL---- 227 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 227 (409)
+|||+++++.+.++.+|. ..+.+++|+ |++.++ ++|+.|++|++||.. .+..+..+
T Consensus 206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----tgk~l~v~~~~~ 280 (356)
T 2w18_A 206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----TTLSVGVMLYCL 280 (356)
T ss_dssp EEEETTTCCEEEEEECCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT----TTEEEEEEEECC
T ss_pred EEEECCCCcEEEEEcCCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC----CCEEEEEEEeec
Confidence 999999999999997654 467788999 788876 567889999999965 55554443
Q ss_pred -eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 228 -MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 228 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
.+|...+.+..++ +.++++++.|++|+|||+.+ ++.+.++.+|
T Consensus 281 p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t----------------------------------Gk~l~tL~gH 324 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL----------------------------------GQCTALLPPV 324 (356)
T ss_dssp CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCC
T ss_pred cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC----------------------------------CcEEEEecCC
Confidence 3555554444443 77899999999999999998 5667777777
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
.... ...++|||||++|++|+.|++|+|||+
T Consensus 325 ~~~v-----vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQH-----WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CC-----CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCe-----EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5321 123579999999999999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=223.71 Aligned_cols=288 Identities=14% Similarity=0.062 Sum_probs=208.8
Q ss_pred CCCCeEEEEECCCCC-EEEEEe----CCC----cEEEEEc--CCCeeeeeeeecccccceEEEEEeCC------------
Q 015301 39 MNSRVYTSQFSNDGS-FFVAAS----QES----NIKVYNV--DKNWKIQKDIETKALRWTITDTSLSP------------ 95 (409)
Q Consensus 39 h~~~v~~~~~s~~~~-~l~t~~----~d~----~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~s~------------ 95 (409)
+...+...+|++.|. ++++|+ .|| ++++||+ .+++.+.. ....+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-NSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-EEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-eEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 335778888988875 555776 467 8999999 88765422 22334444555555553
Q ss_pred --CCcEEEEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---
Q 015301 96 --DQRFLVYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--- 164 (409)
Q Consensus 96 --~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 164 (409)
.+..++.++.+ +.|++||+......... .|...+.+++|+|+|++|++++.++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~ 203 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS 203 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence 25667666654 79999999754322111 1233699999999999999999875
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCe--EEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||++ .+. ...+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence 9999999998865 466688899999999 7888777 6666654 8999974 333 356667888999999999
Q ss_pred CCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 242 DGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 242 ~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
+|++|++++. ++ .|.+||+.+.. ...+..+. .....
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~------~~~~~ 315 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEG------SQNQD 315 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSS------SEEEE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCC------CcccC
Confidence 9999988876 45 67777877622 11111121 12346
Q ss_pred eeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC---eEEEEecCCCcccCC
Q 015301 319 PEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPGIGEAPL 392 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~ 392 (409)
++|+|+|++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|++++|++++.|+ .|++||+........
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 7899999999988864 58999999988774 455554 899999999999998888776 899999986554443
Q ss_pred C
Q 015301 393 P 393 (409)
Q Consensus 393 ~ 393 (409)
+
T Consensus 394 ~ 394 (415)
T 2hqs_A 394 P 394 (415)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=223.54 Aligned_cols=264 Identities=15% Similarity=0.119 Sum_probs=199.0
Q ss_pred eeecCCCCeEEEEECC--------------CCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeC
Q 015301 35 KVDGMNSRVYTSQFSN--------------DGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLS 94 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~--------------~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 94 (409)
.+.+|...+..+++++ .+..++.++.+ +.|++||++.. ..... ..|...+.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l---~~~~~~v~~~~~S 187 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVV---HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEE---EEESSCEEEEEEC
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEE---eCCCCcceeeEEc
Confidence 4778988888888775 25666666554 79999999854 33332 3355689999999
Q ss_pred CCCcEEEEEecCC---EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecC--eEEE
Q 015301 95 PDQRFLVYASICA---IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDN--FIYV 168 (409)
Q Consensus 95 ~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~v 168 (409)
|+|++|++++.++ .|++||+.+++..... .+...+.+++|+|+|+.|+ +++.++ .|++
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~----------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVA----------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEEE----------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEEee----------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 9999999999875 9999999987653221 1223589999999999888 555454 5999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CC--eEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DS--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
||+.+++. ..+..|...+.+++|+ |+++.|++++. ++ .|.+||+. .+. ...+..+...+..++|+|+|++
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGKF 324 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSSE
T ss_pred EECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCCE
Confidence 99998875 5677788899999999 88988887775 45 57777854 333 3344556678899999999999
Q ss_pred EEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 246 FISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 246 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
|++++.+ ..|.+||+.+.. ...+..+. ...+++|+
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~s 362 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSLA 362 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEEC
T ss_pred EEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEEc
Confidence 9988764 589999998732 12222221 23466899
Q ss_pred CCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 323 TAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 323 ~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
|+|++|++++.++ .|++||+. ++....+..|.+.|.+++|+|...
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9999999988876 89999986 666788899999999999999654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=232.71 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=208.4
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCeeeeeeeeccccc----------------------ceEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ-ES-----NIKVYNVDKNWKIQKDIETKALR----------------------WTITDT 91 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-d~-----~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v~~~ 91 (409)
...|.+++|||||++|++++. |+ .|++||+.+++.... .....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467999999999999999998 88 899999998854332 3222222 347889
Q ss_pred EeCCCCcEEEEEecCCEEEEEEcCCC---ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 92 SLSPDQRFLVYASICAIVNIVDVGSS---ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 92 ~~s~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+|+|||++|++++. +.|++||+.++ ...... .+...+..++|+|||++|++++ ++.|++
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~~ 176 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT----------------HGEGFATDAKLSPKGGFVSFIR-GRNLWV 176 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC----------------CSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc----------------cCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence 99999999999886 99999999887 332211 1223589999999999999886 569999
Q ss_pred EECCCCeeeeEEcCCCCC----------------eEEEEEeCCCCcEEEEeeCCC-------------------------
Q 015301 169 YDLQANKCSLRIPAHKSD----------------VNTVCFADETGHLIFSGSDDS------------------------- 207 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg------------------------- 207 (409)
||+.+++.......+... +..++|+ |+++.|++++.|+
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999988766544444332 4789999 8999998887765
Q ss_pred --------eEEEecccccccC-Cceeeeee--ccccceeEEEEcCCCCeEEEEeC-----CCcEEEeeCCCCcccccccc
Q 015301 208 --------LCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSRRDGRYFISNGK-----DQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 208 --------~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~ 271 (409)
.|.+||+. . +....... .|...+..++| |||++|++++. +..|.+||+.+..
T Consensus 256 ~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------- 323 (741)
T 2ecf_A 256 AGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------- 323 (741)
T ss_dssp TTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-------
T ss_pred CCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-------
Confidence 78888964 3 33322222 46778999999 99999987654 5689999988732
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-CCceEEE
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SGAQVAK 350 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-~~~~~~~ 350 (409)
....+..+... .......+.|+|||+++++++.||.++||.+. +++ ...
T Consensus 324 ---------------------------~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 324 ---------------------------QRVLAHETSPT--WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp ---------------------------EEEEEEEECSS--CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred ---------------------------eEEEEEcCCCC--cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 22222222100 00012356899999999999999988888765 455 778
Q ss_pred eccCCcceeee-EEecCcCeEE-eecCCC--eEEEEecCC
Q 015301 351 LDFHNAPVRDC-CWHPIYPMLI-SSSWDC--NIVRWEIPG 386 (409)
Q Consensus 351 ~~~~~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~ 386 (409)
+..|...|..+ .|+|+++.|+ +++.|+ .+++|++..
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88888888887 5999998665 555555 899999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=233.85 Aligned_cols=328 Identities=12% Similarity=0.048 Sum_probs=220.1
Q ss_pred ceeeEEecCceeEeeccc-e------EEEEeee-cCCC-ceeecCCC------------------------CeEEEEECC
Q 015301 4 GREVNYSGRGRFSAADSC-H------VLSRYLP-VNGP-WKVDGMNS------------------------RVYTSQFSN 50 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~-~------~~~~~~~-~~~~-~~l~~h~~------------------------~v~~~~~s~ 50 (409)
...++|||||++++.... . .++.+-. .... ..+..|.. .|.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 568999999998776443 1 2222211 2222 23333332 388999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe--eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece
Q 015301 51 DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI 128 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (409)
||++|++++. +.|++||+.++. .... ...+...+..++|+|||++|++++ ++.|++||+.+++..........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999986 899999998762 2222 233445799999999999999887 56999999988764332221100
Q ss_pred eeeeeeecCC----CCcceeeEEEEEcCCCCeEEEEEecC---------------------------------eEEEEEC
Q 015301 129 HKGLDFSADG----DEDEFGIFSVKFSTDGQELVAAGSDN---------------------------------FIYVYDL 171 (409)
Q Consensus 129 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------------~i~v~d~ 171 (409)
.. +.... ......+..++|+|||++|++++.|+ .|.+||+
T Consensus 194 --~~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 194 --TI-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp --SE-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred --ce-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 00 00000 00001257799999999999998776 8999999
Q ss_pred CC-CeeeeEEc--CCCCCeEEEEEeCCCCcEEEEeeC-----CCeEEEecccccccCCceeeeeecccc----ceeEEEE
Q 015301 172 QA-NKCSLRIP--AHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFISKGRANGVLMGHLE----GITFIDS 239 (409)
Q Consensus 172 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~ 239 (409)
.+ ++...... .|...+..++| ++++.|++++. +..|++||+. .+.....+..+.. .+..++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSSCCCCCSCCEE
T ss_pred CCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCCcCCcCCceEE
Confidence 88 77654432 47788999999 57777776543 5679999965 5555555554443 4568999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+|||+++++++.||.+++|.+... +. ...+..+.. .+..+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~---------------------------------~~-~~~l~~~~~------~v~~~ 384 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSK---------------------------------GK-AAALTHGNW------SVDEL 384 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSS---------------------------------SC-EEESCCSSS------CEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCC---------------------------------CC-eeeeeecce------EEEeE
Confidence 999998889999998888876531 11 222333221 11233
Q ss_pred -eecCCCCEEEE-EeCCC--eEEEEEccC-CceEEEeccCCcceeeeEEecCcCeEEeecCC----CeEEEEecCC
Q 015301 320 -EYSTAQKYIYT-GSSDN--SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPG 386 (409)
Q Consensus 320 -~~s~~~~~l~~-~~~dg--~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~ 386 (409)
.|+|+++.|+. ++.++ .++||++.. ++....+.. ...+..++|+||+++|+....+ +.+.+|+...
T Consensus 385 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 385 LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 58999987755 44455 899999875 555667765 6678899999999977765433 5688998754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=235.67 Aligned_cols=363 Identities=10% Similarity=0.029 Sum_probs=236.8
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE------SNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~ 77 (409)
.+..+|||+....... ..++...........+.+|...|.+++|||||++||+++.+ ..|++|++.++. ...
T Consensus 17 ~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~ 94 (1045)
T 1k32_A 17 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKR 94 (1045)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEE
T ss_pred EeCcEEeCCEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEE
Confidence 4678899763222223 23222223345567889999999999999999999988643 379999998874 222
Q ss_pred eeecccccceE-------EEEEeCCCCcEEEEEecC------CEEEEEEcCCCccccccceecee---------------
Q 015301 78 DIETKALRWTI-------TDTSLSPDQRFLVYASIC------AIVNIVDVGSSARESLANVTEIH--------------- 129 (409)
Q Consensus 78 ~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~--------------- 129 (409)
...|...+ ..++|+|||+.+++++.+ ..|.+|++.+++...........
T Consensus 95 ---lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 95 ---ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp ---CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred ---cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 34455567 899999999977777644 46888888766543221110000
Q ss_pred --------------------eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeE
Q 015301 130 --------------------KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVN 188 (409)
Q Consensus 130 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~ 188 (409)
..-.+.. ..+|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+..|. .+.
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~-l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CccccccccCCCcCCEEEECCCCCeEE-CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 0000000 0245667889999988 5666777788888887653 33445555554 467
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-----------cccceeEEEEc-CCCCeEEEEeCCCcEE
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-----------HLEGITFIDSR-RDGRYFISNGKDQTTK 256 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 256 (409)
..+|+ ++++.|+.+ .++.|.+||+. . ..+..+.. |...+..++|+ |+|++|++++ ++.+.
T Consensus 249 ~~~~S-pDG~~la~~-~~~~i~~~d~~----~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 249 PRHLN-TDGRRILFS-KGGSIYIFNPD----T-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp EEEEE-ESSSCEEEE-ETTEEEEECTT----T-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred eeeEc-CCCCEEEEE-eCCEEEEecCC----c-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 78999 888888877 48999999962 2 22223332 44578999999 9999999887 78899
Q ss_pred EeeCCCCcccccccc---cccccccc-cccccccccceecc---ccCccceeeeecccceeeeeEEEEeeeecCCCCEEE
Q 015301 257 LWDIRKMSSNTTDNS---RLRDYDWD-YRWMEYPSYARRLK---HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 257 iwd~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
+|++........... ......|. ...+.+......+. .........+.++. ..+..++|||||++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~------~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 321 IQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL------GNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp EECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC------CSEEEEEECTTSSEEE
T ss_pred EEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCc------cceeeeEECCCCCEEE
Confidence 999876543221110 11111111 11111111001111 11111112222221 2345678999999999
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC----------eEEEEecCCCc
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC----------NIVRWEIPGIG 388 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iw~~~~~~ 388 (409)
+++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++ .|++||+.++.
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999999999999998888878999999999999999998887654 89999998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=236.56 Aligned_cols=330 Identities=12% Similarity=0.102 Sum_probs=233.4
Q ss_pred ceeeEEecCceeEeeccce------EEEEee--ecCCCceeecCCCCe-------EEEEECCCCCEEEEEeCC------C
Q 015301 4 GREVNYSGRGRFSAADSCH------VLSRYL--PVNGPWKVDGMNSRV-------YTSQFSNDGSFFVAASQE------S 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~------~~~~~~--~~~~~~~l~~h~~~v-------~~~~~s~~~~~l~t~~~d------~ 62 (409)
..+++|||||++++..... .....+ .......+.+|...+ .+++|||||+++++++.+ .
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 4689999999988864321 111222 233356788999888 999999999977777754 3
Q ss_pred cEEEEEcCCCeeeeee----------------------------------------------eecccccceEEEEEeCCC
Q 015301 63 NIKVYNVDKNWKIQKD----------------------------------------------IETKALRWTITDTSLSPD 96 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~s~~ 96 (409)
.|++|++.++...... .....|...+.++.|+++
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 5788887665321100 011234556778889888
Q ss_pred CcEEEEEecCCEEEEEEcCC--CccccccceeceeeeeeeecCCC------------------------C----------
Q 015301 97 QRFLVYASICAIVNIVDVGS--SARESLANVTEIHKGLDFSADGD------------------------E---------- 140 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------------~---------- 140 (409)
.++++++.++.+.+|.+.. +.......... .....+.+++. .
T Consensus 215 -~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~ 292 (1045)
T 1k32_A 215 -RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI 292 (1045)
T ss_dssp -EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred -EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence 6667777888888887653 22211111110 11112222211 0
Q ss_pred -cceeeEEEEEc-CCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-CeEEEEEeCCCCcEEEEeeCCCeEE-Eecccc
Q 015301 141 -DEFGIFSVKFS-TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-DVNTVCFADETGHLIFSGSDDSLCK-VWDRRC 216 (409)
Q Consensus 141 -~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~ 216 (409)
|...+.+++|+ |+|++|++++ ++.|.+|++.+++.. .+..|.. .+..++|+ +++.|+.++.++.+. +||+.
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~- 367 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYR- 367 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETT-
T ss_pred ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECC-
Confidence 22358899999 9999999887 889999999887654 3566777 89999998 788888888888888 88864
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
.+.. ..+..|...+..++|+|||++|++++.++.|++||+.+.
T Consensus 368 ---~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--------------------------------- 410 (1045)
T 1k32_A 368 ---TGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--------------------------------- 410 (1045)
T ss_dssp ---TCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---------------------------------
T ss_pred ---CCCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---------------------------------
Confidence 3333 334477788999999999999999999999999999873
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC----------eEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN----------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.......++. ..+..++|||||++|++++.++ .|++||+.+++ +..+..|...+..++|+||
T Consensus 411 -~~~~~~~~~~------~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 411 -KPTVIERSRE------AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp -CEEEEEECSS------SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred -ceEEeccCCC------CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 2222332333 1234568999999999887654 89999999887 6777788888999999999
Q ss_pred cCeEEeecCCCeEEEEecC
Q 015301 367 YPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 367 ~~~l~s~~~dg~i~iw~~~ 385 (409)
|++|++++.++...+|+..
T Consensus 483 G~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 483 SKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SCEEEEEESCCCCCEECSS
T ss_pred CCEEEEEecccCCcCcchh
Confidence 9999999988888888754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=227.35 Aligned_cols=324 Identities=11% Similarity=0.067 Sum_probs=211.2
Q ss_pred ceeeEEecCceeEeecc--ceEEEEeeecCCCceeecCCC---CeEEEEECCCCCEEEEEeCC---------CcEEEEEc
Q 015301 4 GREVNYSGRGRFSAADS--CHVLSRYLPVNGPWKVDGMNS---RVYTSQFSNDGSFFVAASQE---------SNIKVYNV 69 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~--~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~d---------~~i~vw~~ 69 (409)
..+++|||||++++... ...++..........+.+|.. .|.+++|||||++|++++.+ +.+++||+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 56789999999877632 223343333344445566665 49999999999999999764 77889999
Q ss_pred CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC-----CCccee
Q 015301 70 DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG-----DEDEFG 144 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 144 (409)
+++.. ........+...+..++|||||+.|++++. +.|++||+.+++......... ....+.... ++....
T Consensus 99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~--~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK--EGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB--TTTEEEEECCHHHHHTTSSS
T ss_pred CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC--CCceECcccceeEEEEeccC
Confidence 98754 333333444445888999999999999885 799999998876533221100 000000000 000012
Q ss_pred eEEEEEcCCCCeEEEEEecC----------------------------------eEEEEECCCCeeeeEEcCC------C
Q 015301 145 IFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCSLRIPAH------K 184 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~~~~~~~------~ 184 (409)
+.+++|+|||+.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 47899999999999988653 7999999988865556544 5
Q ss_pred CCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCceeeeeecc-ccce----eEEEEcCCCCeEEEE--eCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGH-LEGI----TFIDSRRDGRYFISN--GKDQ 253 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v----~~~~~~~~~~~l~~~--~~dg 253 (409)
..+..++|+ |++++|++... +..|++||+. .++....+..+ ...+ ..++|+|||+.|+.. ..++
T Consensus 255 ~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 255 YYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp EEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 678999999 88988877653 3579999964 45544444332 3333 378999999987754 4566
Q ss_pred ------cEEEeeC-CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 254 ------TTKLWDI-RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 254 ------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
.|.+||+ ..... .....+..... .....++|+|||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~--------------------------------~~~~~l~~~~~-----~~~~~~~~spdg~ 372 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSN--------------------------------DNIQSITSGDW-----DVTKILAYDEKGN 372 (723)
T ss_dssp SSSCEEEEEEECSSCCSSS--------------------------------CCCCBSCCSSS-----CEEEEEEEETTTT
T ss_pred CCcceeEEEEEeccCCCCc--------------------------------cceeEeecCCe-----EEEeeeEEcCCCC
Confidence 4666773 32110 00111111110 0112257999999
Q ss_pred EEEEEeCC---CeEEEEEccCCc--eEEEecc---CCcceeeeEEecCcCeEEee
Q 015301 327 YIYTGSSD---NSVYIYDLVSGA--QVAKLDF---HNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 327 ~l~~~~~d---g~v~i~d~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~s~ 373 (409)
.|+..+.+ +.++||++.... ....+.. |...+..++|+||+++|+..
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 99766655 789999986432 3344443 66778999999999977654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=203.27 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=186.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-CEEEEEEcC--CCccccccceeceee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNIVDVG--SSARESLANVTEIHK 130 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~~w~~~--~~~~~~~~~~~~~~~ 130 (409)
++++++.|+.|++|+++........ ....+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 3444477999999999633222211 112244478899999999999988876 999999997 443322111110
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECC---CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-C
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-D 205 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 205 (409)
...+..++|+|++++|++++. ++.|.+||+. +.+....+.. ...+.+++|+ ++++++++++ .
T Consensus 83 -----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~ 149 (343)
T 1ri6_A 83 -----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS-PDNRTLWVPALK 149 (343)
T ss_dssp -----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC-TTSSEEEEEEGG
T ss_pred -----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC-CCCCEEEEecCC
Confidence 114788999999998877765 7899999994 4444555554 3468899999 7888777776 8
Q ss_pred CCeEEEecccccccCCceee----eeec-cccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANG----VLMG-HLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
++.|.+||+.. .+.... .... ....+..++|+|+++++++++ .++.|.+||+........
T Consensus 150 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~----------- 215 (343)
T 1ri6_A 150 QDRICLFTVSD---DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE----------- 215 (343)
T ss_dssp GTEEEEEEECT---TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-----------
T ss_pred CCEEEEEEecC---CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE-----------
Confidence 99999999751 132221 2222 334678899999999776554 789999999964111000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-eCCCeEEEEEcc----CCceEEEeccC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLV----SGAQVAKLDFH 354 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~v~i~d~~----~~~~~~~~~~~ 354 (409)
....................++|+|++++|+++ ..++.|.+||+. +.+.+..+..+
T Consensus 216 -------------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 276 (343)
T 1ri6_A 216 -------------------CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE 276 (343)
T ss_dssp -------------------EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred -------------------EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence 000111000000001122356799999888754 478999999998 23455556555
Q ss_pred CcceeeeEEecCcCeEEeec-CCCeEEEEecC
Q 015301 355 NAPVRDCCWHPIYPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 385 (409)
.. +..++|+|++++|++++ .|+.|.+|+++
T Consensus 277 ~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 277 TQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred Cc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 44 89999999999877776 68999999665
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=220.85 Aligned_cols=326 Identities=9% Similarity=0.050 Sum_probs=213.7
Q ss_pred eeEEecCceeEeeccceEEEEeeecCCC-ceeecCC-----------------CCeEEEEECCCCCEEEEEeCCCcEEEE
Q 015301 6 EVNYSGRGRFSAADSCHVLSRYLPVNGP-WKVDGMN-----------------SRVYTSQFSNDGSFFVAASQESNIKVY 67 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~s~~~~~l~t~~~d~~i~vw 67 (409)
.+.|+ +++|+......++++....... ..+..|. ..|.+++|||| +.++.+. ++.|++|
T Consensus 30 ~~~w~-g~~~~~~~~~~i~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~ 106 (706)
T 2z3z_A 30 GLQWM-GDNYVFIEGDDLVFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGF 106 (706)
T ss_dssp TCEEE-TTEEEEEETTEEEEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEE
T ss_pred CCcCc-CCeEEEEeCCcEEEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEE
Confidence 46788 6666655433333332222221 4444443 56999999999 6666554 5999999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-----Cccccccceece--eeeeeeecCCCC
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-----SARESLANVTEI--HKGLDFSADGDE 140 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~ 140 (409)
|+.++... .... +...+.+++|+|||++|+++ .++.|++|++.+ ++.......... ..+.. ....
T Consensus 107 d~~~~~~~-~l~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~---~~~e 178 (706)
T 2z3z_A 107 DMLARKVT-YLFD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA---VHQR 178 (706)
T ss_dssp ETTTTEEE-EEEC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC---CGGG
T ss_pred ECCCCceE-EccC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc---hhhh
Confidence 99887433 2222 23467889999999999985 689999999987 654322211110 00000 0001
Q ss_pred cceeeEEEEEcCCCCeEEEEE---------------------------------ecCeEEEEECCCCeeeeEE--cCCCC
Q 015301 141 DEFGIFSVKFSTDGQELVAAG---------------------------------SDNFIYVYDLQANKCSLRI--PAHKS 185 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~--~~~~~ 185 (409)
+...+.+++|+|||++|++++ .+..|++||+.+++..... ..|..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 112357899999999999987 3478999999988765443 24667
Q ss_pred CeEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCCceeeeee-c-ccc---ceeEEEEcC--CCCeEEEEeCCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKGRANGVLM-G-HLE---GITFIDSRR--DGRYFISNGKDQ 253 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~~~~~dg 253 (409)
.+.+++|+ |+++.|++++.++ .|++||+. .+.....+. . +.. .+..+.|+| +|++++++..|+
T Consensus 259 ~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 259 FLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp EEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred eEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 89999999 8999998887775 89999965 442222222 1 221 246789999 999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe-eeecCCCCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS-PEYSTAQKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~ 332 (409)
.+++|++... +..+..+..+.. .+.. ++|+|+++.|+.++
T Consensus 334 ~~~l~~~~~~---------------------------------~~~~~~l~~~~~------~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 334 WNHLYLYDTT---------------------------------GRLIRQVTKGEW------EVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCEEEEEETT---------------------------------SCEEEECCCSSS------CEEEEEEECTTSSEEEEEE
T ss_pred ccEEEEEECC---------------------------------CCEEEecCCCCe------EEEeeeEEcCCCCEEEEEe
Confidence 9999987521 122233333221 1122 57899998876655
Q ss_pred CC-C----eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC----CeEEEEecCCCc
Q 015301 333 SD-N----SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPGIG 388 (409)
Q Consensus 333 ~d-g----~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 388 (409)
.+ + .|+.||+.+++ ...+. |...+.+++|+||+++|+..+.+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 44 4 67777877765 34444 67779999999999987765433 569999997764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=197.73 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=187.3
Q ss_pred EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-Cccccccceeceeeeeeee
Q 015301 57 AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTEIHKGLDFS 135 (409)
Q Consensus 57 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~ 135 (409)
.++.|++|++||+.+++.. ... .|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVW---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEE---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----------
T ss_pred CCCcceeEEEEeCCCCcee-eec---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----------
Confidence 3467899999999988543 222 2455899999999999999886 88999999988 654322211
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEe--c--CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCeEE
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGS--D--NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCK 210 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~ 210 (409)
.+...+.+++|+|++++|++++. + ..|..++..+++ ...+..+ ..+..++|+ ++++.|+ +++.++.++
T Consensus 82 ----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s-pdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 82 ----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS-PDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp ----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC-TTSSEEEEEEEETTEEE
T ss_pred ----cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC-CCCCEEEEEECCCCceE
Confidence 11235888999999999999983 2 455555655555 3344433 358999999 7777666 788899999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
+|+++. .......+..+...+.++.|+|++++|++++ .++.+.+|++...
T Consensus 155 l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~-------------------------- 205 (297)
T 2ojh_A 155 IYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD-------------------------- 205 (297)
T ss_dssp EEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------------
T ss_pred EEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------------------------
Confidence 999751 2334455667778899999999999888766 5889999987631
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-----------CeEEEEEccCCce--EEEeccCCc
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-----------NSVYIYDLVSGAQ--VAKLDFHNA 356 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~v~i~d~~~~~~--~~~~~~~~~ 356 (409)
...+..+..+. ..+..+.|+|++++|++++.+ +.|++||+.+++. +..+.+|..
T Consensus 206 -------~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 206 -------GSSVERITDSA------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 272 (297)
T ss_dssp -------SSCEEECCCCS------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred -------CCCcEEEecCC------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence 12233333332 234567899999999988876 5699999988865 444557888
Q ss_pred ceeeeEEecCcCeEEeecCCC
Q 015301 357 PVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg 377 (409)
.+..++|+|++++|++++.|.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 999999999999888876653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-26 Score=192.53 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=189.5
Q ss_pred EECCCCCE-EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCCcc-cccc
Q 015301 47 QFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSAR-ESLA 123 (409)
Q Consensus 47 ~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~-~~~~ 123 (409)
.|.+++++ +++.+.++.|.+||.++++...... . +...+ .++|+|+++++++++. ++.|.+||..+++. ....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-L--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-C--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-c--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 45666555 6777889999999999886554433 2 22356 9999999997776665 88999999988764 1111
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.. +..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. ...+.+++|+ |+++++
T Consensus 80 ~~---------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~~l 142 (331)
T 3u4y_A 80 QE---------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGNGL 142 (331)
T ss_dssp EE---------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSSCE
T ss_pred cc---------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCCEE
Confidence 10 111344499999999999555443 899999999998887764 4457999999 777644
Q ss_pred -EEeeCCCe-EEEecccccccCCcee---eeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCccccccccccc
Q 015301 201 -FSGSDDSL-CKVWDRRCFISKGRAN---GVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 201 -~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
++...++. +.+|++.. .+... ............++|+|+|++++++ ..++.|.+||+.+....
T Consensus 143 ~~~~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-------- 211 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-------- 211 (331)
T ss_dssp EEEEETTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC--------
T ss_pred EEEecCCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc--------
Confidence 45556688 99999752 11111 1112334567899999999966555 46889999999873320
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCce--EEEe
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQ--VAKL 351 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~--~~~~ 351 (409)
..+..+... .....++|+|+|++|++++ .++.|.+||+.+++. +..+
T Consensus 212 -----------------------~~~~~~~~~-------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 212 -----------------------TLLNAVGTN-------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp -----------------------EEEEEEECS-------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE
T ss_pred -----------------------ceeeeccCC-------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc
Confidence 002222222 1123567999999776665 478899999998877 4443
Q ss_pred ccC----Ccc---eeeeEEecCcCeEEee-cCCCeEEEEecCCCc
Q 015301 352 DFH----NAP---VRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 388 (409)
Q Consensus 352 ~~~----~~~---v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 388 (409)
..+ ... ...++|+||+++|+++ ..++.|.+||+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 322 222 2458999999977554 556799999998654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-26 Score=194.58 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=206.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQ-------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 109 (409)
.....+..++|+|+|+++++++. ++.|.+||..+++....... . ..+..++|+|++++++++ ..++.|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-D---LKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-S---SCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-C---CCcceEEECCCCCEEEEEecCCCEE
Confidence 34567889999999999888774 56899999998865544332 2 246789999999966555 557999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+||..+++............. .......+.+++|+|+++++++++. ++.|.+||..+++.+..+..+...+
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRT------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCC------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred EEEeCCCCeeEEEEecCCCccc------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 9999988765333222110000 0001113788999999998887763 7889999999999988887666678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
.+++|+ ++++.+++++.++.|.+||+. .++....+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 999999 889999999999999999965 5555554443 4556788999999997776665 58999999977
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEE
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYD 341 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d 341 (409)
.+ .+..+..... ..++|+|+++++++++ .++.|.+||
T Consensus 263 ~~----------------------------------~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 263 GN----------------------------------ILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CC----------------------------------EEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred Cc----------------------------------EEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 32 2222222111 2457899999666555 689999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
..+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999998888754 4779999999999777665553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=227.91 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=199.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---------CEEEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---------AIVNI 111 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~~ 111 (409)
..+.+++|+|||+++++ +.||+|++||+.+++..............|.+++|||||++|++++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 44788999999998776 689999999999885543322111111248999999999999999764 78999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe----
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV---- 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v---- 187 (409)
||+.+++....... ..+...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~~~l~~~-------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 96 SKIPHGDPQSLDPP-------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp EESSSCCCEECCCT-------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred EECCCCceEeccCC-------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence 99988765222111 122334788999999999998875 799999999988776665444433
Q ss_pred --------------EEEEEeCCCCcEEEEeeCCC----------------------------------eEEEeccccccc
Q 015301 188 --------------NTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFIS 219 (409)
Q Consensus 188 --------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~ 219 (409)
.+++|+ |+++.|++++.|+ .|++||+.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---- 236 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---- 236 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS----
T ss_pred ccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC----
Confidence 789999 8999998887543 78999964
Q ss_pred CCceeeeeecc------ccceeEEEEcCCCCeEEEEeC----CCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 220 KGRANGVLMGH------LEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 220 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
.+.....+..+ ...+..++|+|||+++++... +..|.+||+.+..
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------------------------- 291 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------------------------- 291 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-------------------------
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-------------------------
Confidence 33333334333 567899999999998876643 3579999987732
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCC------eEEEEE-ccCCc--eEEEeccCCcce
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDN------SVYIYD-LVSGA--QVAKLDFHNAPV 358 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg------~v~i~d-~~~~~--~~~~~~~~~~~v 358 (409)
....+..+... ........+.|+|||+.|+. +..++ .|++|| ..+++ +...+..+...+
T Consensus 292 ---------~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 292 ---------CTKKHEDESEA-WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp ---------EEEEEEEECSS-CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred ---------ceEEEEeccCC-EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 12222111100 00000125689999997775 44566 577777 34444 145555444445
Q ss_pred ee-eEEecCcCeEEeecCC---CeEEEEecCCC
Q 015301 359 RD-CCWHPIYPMLISSSWD---CNIVRWEIPGI 387 (409)
Q Consensus 359 ~~-~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 387 (409)
.. ++|+||++.|+..+.+ +.+++|++...
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 54 6999999988765544 78999998643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=210.65 Aligned_cols=319 Identities=14% Similarity=0.082 Sum_probs=207.9
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----Ceeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-----~~~~~~ 77 (409)
...+++||||+.++++.+..+............+..+...+.+++|||||++||++ .|+.|++|++.+ ++....
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe
Confidence 46789999996655554433332222333445667788889999999999999985 679999999987 643322
Q ss_pred eeecccc-----------cceEEEEEeCCCCcEEEEEe---------------------------------cCCEEEEEE
Q 015301 78 DIETKAL-----------RWTITDTSLSPDQRFLVYAS---------------------------------ICAIVNIVD 113 (409)
Q Consensus 78 ~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~~w~ 113 (409)
....... ...+.+++|+|||++|++++ .+..|.+||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 1111110 01147899999999999987 346799999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCeeeeEE-c-CCCC-
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRI-P-AHKS- 185 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~-~-~~~~- 185 (409)
+.+++....... ..+...+.+++|+|||++|++++.++ .|.+||+.+++....+ . .+..
T Consensus 242 ~~~~~~~~~~~~-------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 242 LATGKTVYLQTG-------------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp TTTTEEEECCCC-------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred CCCCceEeeccC-------------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 988764322210 12344689999999999999988775 9999999998333333 2 2222
Q ss_pred --CeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE-EEEcCCCCeEEEEeCC-C----cE
Q 015301 186 --DVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF-IDSRRDGRYFISNGKD-Q----TT 255 (409)
Q Consensus 186 --~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d-g----~i 255 (409)
.+..++|+ + +++++++++.||.+++|++. ..+.....+..+...+.. ++|+|+++.|+.++.+ + .|
T Consensus 309 ~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~---~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 VEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYD---TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEE---TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ECccCCceee-cCCCCEEEEEEccCCccEEEEEE---CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 34678999 7 88999999999999999864 245556666777777876 7999999988766554 3 56
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD- 334 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d- 334 (409)
..||+.+.. ...+. +. ..+..++|||||++|+....+
T Consensus 385 ~~~d~~~~~-----------------------------------~~~l~-~~------~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 385 YCIDIKGGK-----------------------------------TKDLT-PE------SGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp EEEETTCCC-----------------------------------CEESC-CS------SSEEEEEECTTSSEEEEEEECS
T ss_pred EEEEcCCCC-----------------------------------ceecc-CC------CceEEEEECCCCCEEEEEecCC
Confidence 666655421 11111 11 113456899999988877544
Q ss_pred ---CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC--eEEEEec
Q 015301 335 ---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC--NIVRWEI 384 (409)
Q Consensus 335 ---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iw~~ 384 (409)
+.|++||+.+++ ...+. +..++....|.+.....+ -+.|| .+..|-.
T Consensus 423 ~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMPEIRTGTI-MAADGQTPLYYKLT 474 (706)
T ss_dssp SCSCEEEEEESSSCE-EEEEE-CC------CCCCEEEEEE-ECTTSSSEEEEEEE
T ss_pred CCCcEEEEEECCCCe-Eeecc-ccchhhhcCCCCcEEEEE-EcCCCCEEEEEEEE
Confidence 569999998887 43333 444455555543332223 33455 5665544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=189.10 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=177.1
Q ss_pred CCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 61 ESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 61 d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
++.|.+|+++... .+.. .....+...+..++|+|+++ |++++. ++.|.+|++.+++.........
T Consensus 15 ~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--------- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA--------- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE---------
T ss_pred CCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec---------
Confidence 4568888775421 2222 11222334678899999999 665554 6899999997665432222111
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECC-CCe--eeeEEcC---------CCCCeEEEEEeCCCCcEEEEe
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQ-ANK--CSLRIPA---------HKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~ 203 (409)
+...+..++|+|+|++|++++ .++.|.+|++. ++. .+..+.. +...+.+++|+ |+++++++.
T Consensus 84 ----~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~ 158 (347)
T 3hfq_A 84 ----PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVID 158 (347)
T ss_dssp ----ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEE
T ss_pred ----CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEe
Confidence 122578899999999998888 67999999996 332 2333321 12348899999 777877777
Q ss_pred eCCCeEEEecccccccCCcee--eeeec-cccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRAN--GVLMG-HLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
..++.|.+||+.. .+... ..... ....+..++|+|+|+++++ ...++.+.+|++.......
T Consensus 159 ~~~~~v~~~~~~~---~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------ 223 (347)
T 3hfq_A 159 LGSDKVYVYNVSD---AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------ 223 (347)
T ss_dssp TTTTEEEEEEECT---TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------
T ss_pred CCCCEEEEEEECC---CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------
Confidence 7789999999751 22221 11122 2235778999999996665 4568899999987411000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE-EEeCCCeEEEEEccC---CceEEEeccCC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVS---GAQVAKLDFHN 355 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~v~i~d~~~---~~~~~~~~~~~ 355 (409)
..+..+...............++|+|||++|+ +...++.|.+|++.. .+.+..+..+.
T Consensus 224 ------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 224 ------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp ------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred ------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 00111111110000002244668999999874 555689999999973 25566666667
Q ss_pred cceeeeEEecCcCeEEeecC-CCeEEEEecC
Q 015301 356 APVRDCCWHPIYPMLISSSW-DCNIVRWEIP 385 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 385 (409)
..+..++|+||+++|++++. ++.|.+|+++
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 77899999999998887765 4899999664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=190.43 Aligned_cols=275 Identities=11% Similarity=0.076 Sum_probs=193.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
++|++++.++.|.+||..+++...... .......+..++|+|+++.++ ++..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---
Confidence 478999999999999999886554432 211000367899999998765 455678999999988765332221110
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE------------ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG------------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..+...+..++|+|+|++++++. .++.|.+||+.+++.+..+.. ...+.+++|+ +++++
T Consensus 78 -------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~ 148 (337)
T 1pby_B 78 -------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSK 148 (337)
T ss_dssp -------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSC
T ss_pred -------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCE
Confidence 00122467899999999998886 469999999999988877764 4567889999 78887
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC------------------------cE
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ------------------------TT 255 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i 255 (409)
|+++ ++.|.+||+. .++....+..+.. ...+.|+|+++.++..+.++ .|
T Consensus 149 l~~~--~~~i~~~d~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 149 LYGL--GRDLHVMDPE----AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp EEEE--SSSEEEEETT----TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEe--CCeEEEEECC----CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 7777 6889999975 4555544443321 11237899988776655433 34
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
.+||+.+.+.. ...+..+. .....++++|++++++++ ++
T Consensus 222 ~~~d~~~~~~~---------------------------------~~~~~~~~------~~~~~~~~s~dg~~l~~~--~~ 260 (337)
T 1pby_B 222 LTMDLETGEMA---------------------------------MREVRIMD------VFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp EEEETTTCCEE---------------------------------EEEEEECS------SCEEEEEECTTSSEEEEE--ES
T ss_pred EEEeCCCCCce---------------------------------EeecCCCC------CceeeEEECCCCCEEEEe--CC
Confidence 66666552210 00111111 123356899999999988 79
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+++.
T Consensus 261 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred eEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 999999999998888764 35678999999999888888999999999987653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-25 Score=186.66 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=180.9
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIV 112 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w 112 (409)
..|...+.+++|+|+|++|++++.+ +.|.+|+++ ++.. ........+. .+..++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 4577889999999999999888876 899999997 4422 2111122122 6889999999998877664 8899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCC-Ceeee----EEcC-CCC
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQA-NKCSL----RIPA-HKS 185 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~~-~~~ 185 (409)
|+..+.......... ....+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. ...
T Consensus 112 d~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVE-------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEETTEEEEEEEEEC-------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred ECCCCcccccccccc-------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 995322111111100 011478899999999888887 789999999987 65432 2222 345
Q ss_pred CeEEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeee---cc---ccceeEEEEcCCCCeEEEE-eCCCcEEE
Q 015301 186 DVNTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLM---GH---LEGITFIDSRRDGRYFISN-GKDQTTKL 257 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~l~~~-~~dg~i~i 257 (409)
.+..++|+ ++++++++ +..++.|.+||+.............. .. ...+..++|+|++++|+++ ..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899999 77876654 45889999999752111111122221 11 2356689999999887754 47899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCe
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~ 336 (409)
||+...... ...+..+..+. ....++|+|++++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCC-------ccceEEECCCCCEEEEecCCCCe
Confidence 998731100 01111222111 123557899999888887 5799
Q ss_pred EEEEEcc--CCc--eEEEeccCCcceeeeEEecCcC
Q 015301 337 VYIYDLV--SGA--QVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 337 v~i~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
|.+|++. +++ .+..+.. .....+++|.++.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 9999554 553 3444443 24566778877543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=207.45 Aligned_cols=277 Identities=11% Similarity=0.000 Sum_probs=191.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~ 115 (409)
..+|++++|+|||++||+++. ||+++||+++++.. .... ..+...+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt--~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLN--REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECC--SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeee--cccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 467999999999999999887 99999999976633 3322 222247999999999 77777664 4555666554
Q ss_pred C--CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 116 S--SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
. ...... .... ..+...+|+|+++.+ ++.+.++.+.+||+.+++.......+. .+++|
T Consensus 97 ~~~~g~~~~--l~~~--------------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 97 TSRPGEEQR--LEAV--------------KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp TTSTTCCEE--CTTS--------------CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred ccCCCcccc--ccCC--------------CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 3 211111 1000 023356788887643 333344556699999987665544333 78999
Q ss_pred eCCCCcEEEEeeCC----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCCCccc
Q 015301 193 ADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSN 266 (409)
Q Consensus 193 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 266 (409)
+ |++++|++++.+ +.|++||+. .+. ...+..|...+..++|+|||+.|+++..++ .|++||+.+....
T Consensus 158 s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 158 D-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp E-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred C-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9 899999988877 789999964 333 345677888899999999999999888888 8999999873321
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceee-e-eEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT-L-IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.+.++..... . ......+.|+|||.++++++.++.+++|++
T Consensus 232 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 232 -----------------------------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp -----------------------------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred -----------------------------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 1112110000 0 000123349999999999999999999999
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCC---eEEEEecCC
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPG 386 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 386 (409)
++... .+.+.|.+++|+ +++++++++.+. .+++|+...
T Consensus 275 g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66544 345678999999 999888887774 477777654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=207.87 Aligned_cols=327 Identities=9% Similarity=-0.023 Sum_probs=206.2
Q ss_pred ceeeEEecCceeEeeccc--eEEEEeeecCCCceeecCCC---CeEEEEECCCCCEEEEEeC---------CCcEEEEEc
Q 015301 4 GREVNYSGRGRFSAADSC--HVLSRYLPVNGPWKVDGMNS---RVYTSQFSNDGSFFVAASQ---------ESNIKVYNV 69 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~--~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~ 69 (409)
...++|||||++++.... ..++..........+.+|.. .|.+++|||||++||+++. ++.|++||+
T Consensus 18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 356899999998776432 23333322222223334433 4999999999999998876 689999999
Q ss_pred CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc-------
Q 015301 70 DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE------- 142 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (409)
++++.+.. .... ..+..++|||||+.|+++. ++.|++|++.+++........ .....+. ++.
T Consensus 98 ~~g~~~~~-~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~--~~~~v~~----g~~~~v~~ee 166 (719)
T 1z68_A 98 SNGEFVRG-NELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG--RENKIFN----GIPDWVYEEE 166 (719)
T ss_dssp TTTEECCS-SCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC--BTTTEEE----SSCCHHHHHH
T ss_pred CCCccccc-eecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC--CcCCeEc----ccccceeeee
Confidence 98854210 1111 2578899999999999886 789999999887653322110 0000000 010
Q ss_pred --eeeEEEEEcCCCCeEEEEEecC----------------------------------eEEEEECCCCeee--------e
Q 015301 143 --FGIFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCS--------L 178 (409)
Q Consensus 143 --~~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~--------~ 178 (409)
....+++|+|||++|++++.|. .|++||+.+++.. .
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 1125899999999999988663 7899999987753 1
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEec----ccccccCCceeeee----ecccccee-----EEEEcC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDD----SLCKVWD----RRCFISKGRANGVL----MGHLEGIT-----FIDSRR 241 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~ 241 (409)
.+..|...+..++|+ |++.++++.... ..|.+|| +. .+.....+ ..|...+. .+.|+|
T Consensus 247 ~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 247 MIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp HHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCC----CCceEEEEecccccCCceEccccCCccEECC
Confidence 133578889999999 678777774432 2478888 54 33333333 35666666 789999
Q ss_pred CCCeEEE--EeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 242 DGRYFIS--NGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 242 ~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
||+.++. ...+| .|.+||+.... ...+..+.. . +.
T Consensus 322 dg~~l~~~~~~~~g~~~l~~~~~~~~~-----------------------------------~~~lt~~~~--~----v~ 360 (719)
T 1z68_A 322 DAISYYKIFSDKDGYKHIHYIKDTVEN-----------------------------------AIQITSGKW--E----AI 360 (719)
T ss_dssp TSSCEEEEEECTTSCEEEEEESSCSTT-----------------------------------CEECSCSSS--C----EE
T ss_pred CCCeEEEEEEccCCceEEEEEECCCCc-----------------------------------eEecccCce--E----EE
Confidence 9996654 44555 56666765421 111221111 0 11
Q ss_pred eeeecCCCCEEEEEeCC-----CeEEEEEccC--Cc-eEEEec----cCCcceeeeEEecCcCeEEe-ecCC--CeEEEE
Q 015301 318 SPEYSTAQKYIYTGSSD-----NSVYIYDLVS--GA-QVAKLD----FHNAPVRDCCWHPIYPMLIS-SSWD--CNIVRW 382 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~d-----g~v~i~d~~~--~~-~~~~~~----~~~~~v~~~~~s~~~~~l~s-~~~d--g~i~iw 382 (409)
.+.++ +++.|+..+.+ +..++|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+|
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence 22334 56666655554 7888888764 32 133343 25667888999999997664 3333 578899
Q ss_pred ecCCCc
Q 015301 383 EIPGIG 388 (409)
Q Consensus 383 ~~~~~~ 388 (409)
|+.+++
T Consensus 440 d~~~g~ 445 (719)
T 1z68_A 440 DGRTDQ 445 (719)
T ss_dssp CSSSCC
T ss_pred ECCCCC
Confidence 886654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=176.89 Aligned_cols=255 Identities=9% Similarity=0.059 Sum_probs=168.1
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC---EEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~ 110 (409)
.+..+...+ +++|+|+|+++++++. ++.|.+||..++......... +..+..+++|+|++++|+++..++ .|.
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 111 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE--GQSSMADVDITPDDQFAVTVTGLNHPFNMQ 111 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE--CSSCCCCEEECTTSSEEEECCCSSSSCEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc--CCCCccceEECCCCCEEEEecCCCCcccEE
Confidence 445556667 9999999997766655 889999999988552222222 222444499999999999555553 999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCe-EEEEECCCCeee----eEEcCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNF-IYVYDLQANKCS----LRIPAHK 184 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~-i~v~d~~~~~~~----~~~~~~~ 184 (409)
+||+.+++....... ...+.+++|+|+|+++++++. ++. |.+|++.....+ .......
T Consensus 112 v~d~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 112 SYSFLKNKFISTIPI----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EEETTTTEEEEEEEC----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EEECCCCCeEEEEEC----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 999988765332211 113689999999987766655 477 999998754332 1122345
Q ss_pred CCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCce---eeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEee
Q 015301 185 SDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWD 259 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 259 (409)
..+..++|+ ++++++ +++..++.|.+||+. .++. ...+.. ...+..++|+|+|++++++. .++.|.+||
T Consensus 176 ~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 176 TRPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SSEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred CCccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 568999999 788755 455578999999975 4444 444543 46678899999999776654 578899999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSV 337 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v 337 (409)
+.+..... +..+..... ..........++|+|++++|++++. ++.|
T Consensus 250 ~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 250 QLSGTLSF--------------------------------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp TTTTEEEE--------------------------------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred CCCCceee--------------------------------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 98743211 011100000 0000000123579999998876655 5799
Q ss_pred EEEEccCCc
Q 015301 338 YIYDLVSGA 346 (409)
Q Consensus 338 ~i~d~~~~~ 346 (409)
.+||+.+..
T Consensus 298 ~v~d~~~~~ 306 (331)
T 3u4y_A 298 KVFTISGKV 306 (331)
T ss_dssp EEEETTSCE
T ss_pred EEEEecCCc
Confidence 999997654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-24 Score=180.80 Aligned_cols=283 Identities=14% Similarity=0.115 Sum_probs=182.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
.++++++++++++++.++.|++||..+++......... ...+..++|+|++++++ +...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45788899999999999999999999886554432211 11367899999998665 4457899999999887653322
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------------CeEEEEECCCCee---eeEEcCCCCCeE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------------NFIYVYDLQANKC---SLRIPAHKSDVN 188 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~---~~~~~~~~~~v~ 188 (409)
...... ......+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.
T Consensus 82 ~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 82 NLSSVP---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp ESCCST---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred Eccccc---------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 211000 0001237789999999999999876 8999999988543 33343 344688
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc------------------------ceeEEEEcCCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE------------------------GITFIDSRRDGR 244 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~ 244 (409)
+++|+ ++++ +++++. .|.+||+. .++....+..+.. ....+++++++.
T Consensus 152 ~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 152 LMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 99999 7888 555543 49999965 4444443332210 223455554432
Q ss_pred eEEEEeCCC-cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 245 YFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 245 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
......... .+..+|..+.. +..+.... .......++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~----~~~~~~~~~~sp 264 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFAD----LTELYFTGLRSP 264 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEE----CSSCEEEEEECS
T ss_pred CCccccccceeEEEEeccCCc-----------------------------------EEeccccc----CCCcceeeEecC
Confidence 110000000 11123333211 11111000 001234567899
Q ss_pred -CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 324 -AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 324 -~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+.
T Consensus 265 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 265 KDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99999988 88999999999998888763 34578999999999888888899999999987653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-24 Score=177.18 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=152.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeeeeeecccccceEEEEEeCCCCcEEEEEe--cCCEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYAS--ICAIV 109 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i 109 (409)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ +..... .. ..+...+.+++|+|++++|++++ .++..
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DT-GFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-CC-TTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-cc-ccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 346678999999999999999999987 78999999988 643322 21 12234688999999999999998 33444
Q ss_pred EEE--EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecCeEEEEECCC-CeeeeEEcCCCC
Q 015301 110 NIV--DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDLQA-NKCSLRIPAHKS 185 (409)
Q Consensus 110 ~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~-~~~~~~~~~~~~ 185 (409)
.+| +..++....... ...+..++|+|++++|+ ++..++.+.+|++.. ......+..+..
T Consensus 111 ~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTK-----------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp EEEEEETTCCCCEECCS-----------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred eEEEEECCCCceEEeec-----------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 555 444443211110 11378899999999887 677889889998532 233455667888
Q ss_pred CeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----------C
Q 015301 186 DVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----------Q 253 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g 253 (409)
.+.+++|+ ++++.|+.++ .++.+++|+++ ........+..|...+..+.|+|++++|++++.+ +
T Consensus 174 ~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 174 RNDGPDYS-PDGRWIYFNSSRTGQMQIWRVR---VDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CEEEEEEC-TTSSEEEEEECTTSSCEEEEEE---TTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred ccccceEC-CCCCEEEEEecCCCCccEEEEC---CCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 99999999 7888777655 58999999975 2344556667777889999999999999888766 5
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
.|.+||+.+
T Consensus 250 ~l~~~d~~~ 258 (297)
T 2ojh_A 250 RVQLMDMDG 258 (297)
T ss_dssp EEEEEETTS
T ss_pred EEEEEecCC
Confidence 699999876
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=183.18 Aligned_cols=292 Identities=13% Similarity=0.098 Sum_probs=190.4
Q ss_pred CceeecCCCCeEE-----EEECCCCCEEEEEeC-CC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 33 PWKVDGMNSRVYT-----SQFSNDGSFFVAASQ-ES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 33 ~~~l~~h~~~v~~-----~~~s~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+..|...... .+|||||++|+.++. ++ .|.+||+.+++.... . ..+...+..+.|+||++.|++++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-t--~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-T--EGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-C--CSSCBCSSSCEECTTSSEEEEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-e--eCCCCCccceEEcCCCCEEEEEe
Confidence 3466667666665 899999999998887 66 388889888744332 2 22222344578999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE--EEEEcCCCCeEEEEE---------------------
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF--SVKFSTDGQELVAAG--------------------- 161 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~--------------------- 161 (409)
.++.|++||+.+++.......... .+. ...++|++++++...
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~---------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAE---------------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTT---------------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCCeEEEEECCCCcceeeeechhh---------------cccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 999999999998865433222111 122 234588998877432
Q ss_pred -ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCC------CeEEEecccccccCCceeeeeeccc--
Q 015301 162 -SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 162 -~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
.+..|.+||+.+++... +..+...+..++|+ | +++.|+....+ ..|.++|+. +.....+..+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEG 237 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTT
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCC
Confidence 23679999999887544 44466788999999 7 88888776653 367777753 22233333343
Q ss_pred cceeEEEEcCCCCeEEEEeC-CC----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 232 EGITFIDSRRDGRYFISNGK-DQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
..+..+.|+|||+.|+..+. ++ .|.+||+.+.+.. .+..+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--------------------------------~l~~~~~~ 285 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR--------------------------------QLTSMPAC 285 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--------------------------------EEEEECCE
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--------------------------------EEEcCCCc
Confidence 35778899999998866543 22 3999999873311 11111110
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEE---------eCCCeEEEEEccCCceEEEeccCCc-----------ceeeeEEecC
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTG---------SSDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPI 366 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~---------~~dg~v~i~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~ 366 (409)
. ..........|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+..++|+||
T Consensus 286 ~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 286 S---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp E---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred e---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCC
Confidence 0 000001112588899988754 4567899999988765 44555555 5788999999
Q ss_pred cCeEEeec-CCCeEEEEecC
Q 015301 367 YPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 367 ~~~l~s~~-~dg~i~iw~~~ 385 (409)
|+.|+.++ .+|...+|.++
T Consensus 362 g~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 362 DKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEEEEE
Confidence 99776554 56777777654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-23 Score=176.29 Aligned_cols=278 Identities=13% Similarity=0.087 Sum_probs=178.0
Q ss_pred CCCEEEEEe----CCCcEEEEEcCC--CeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCC--c
Q 015301 51 DGSFFVAAS----QESNIKVYNVDK--NWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSS--A 118 (409)
Q Consensus 51 ~~~~l~t~~----~d~~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~--~ 118 (409)
...++++|+ .++.|.+|+++. +. +...... +...+..++|+|++++|++++.+ +.|.+|++... +
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~-~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGE-SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCC-EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCC-EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 344566664 456899998753 42 2222222 44467889999999999998875 79999998763 3
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEE------cC--------C
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRI------PA--------H 183 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~------~~--------~ 183 (409)
......... +...+..+++ ++++|++++ .++.|.+|++.....+..+ .+ +
T Consensus 89 ~~~~~~~~~-------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 89 LHLLNTQKT-------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT 153 (361)
T ss_dssp EEEEEEEEC-------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred EEEeeEecc-------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence 222111110 1113566777 788777776 4789999999754332211 11 1
Q ss_pred CCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCC----c-e------eeeeeccccceeEEEEcCCCCeEEEEe-
Q 015301 184 KSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKG----R-A------NGVLMGHLEGITFIDSRRDGRYFISNG- 250 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~-~------~~~~~~~~~~v~~~~~~~~~~~l~~~~- 250 (409)
...+.+++|+ |+++++++++ .++.|.+|++... .. + . ......+...+..++|+|+|+++++++
T Consensus 154 ~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 154 MPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPN--ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCC--CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 2345789999 7888665544 5889999987521 21 1 1 111223445678999999999887777
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.++.|.+||+.+.... .+..+...... ......++|+|||++|++
T Consensus 231 ~~~~v~v~~~~~g~~~--------------------------------~~~~~~~~~~~---~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 231 IGGTVIAFRYADGMLD--------------------------------EIQTVAADTVN---AQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp TTCEEEEEEEETTEEE--------------------------------EEEEEESCSSC---CCCEEEEEECTTSSEEEE
T ss_pred CCCeEEEEEecCCceE--------------------------------EeEEEecCCCC---CCCcccEEECCCCCEEEE
Confidence 5899999998752110 01111111000 011245679999999877
Q ss_pred EeCC--CeEEEEEcc--CCc--eEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecC
Q 015301 331 GSSD--NSVYIYDLV--SGA--QVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 331 ~~~d--g~v~i~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 385 (409)
+..+ +.|.+|++. +++ .+..+.. ...+.+++|+||+++|++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 6654 899999995 444 4455554 55788999999999888776 67999997665
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=203.66 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=187.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcEEEEEec---------CCEEEEEEc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRFLVYASI---------CAIVNIVDV 114 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~~w~~ 114 (409)
+++|+|||++++++ .|++|++||+.+++.... ...... ...+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI-LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE-ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE-EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999999765554 699999999998854332 222110 013889999999999999876 789999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCe------
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDV------ 187 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v------ 187 (409)
.+++......+. ..+..++|+|||+.|+.+. ++.|++||+.+++..... .++...|
T Consensus 98 ~~g~~~~~~~l~----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 98 SNGEFVRGNELP----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp TTTEECCSSCCC----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred CCCccccceecC----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 988752111111 1478899999999999885 789999999888765432 2332222
Q ss_pred -----------EEEEEeCCCCcEEEEeeCCC----------------------------------eEEEecccccccCCc
Q 015301 188 -----------NTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFISKGR 222 (409)
Q Consensus 188 -----------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~ 222 (409)
.+++|+ |+++.|++++.|. .|++||+. .+.
T Consensus 161 ~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~----~~~ 235 (719)
T 1z68_A 161 WVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT----YPA 235 (719)
T ss_dssp HHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----CHH
T ss_pred ceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----CCC
Confidence 489999 8999999887652 78899975 222
Q ss_pred ee--------eeeeccccceeEEEEcCCCCeEEEEeCC----CcEEEee----CCCCccccccccccccccccccccccc
Q 015301 223 AN--------GVLMGHLEGITFIDSRRDGRYFISNGKD----QTTKLWD----IRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 223 ~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.. ..+.+|...+..++|+||++++++.... ..|.+|| +.+........
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~---------------- 299 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE---------------- 299 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE----------------
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe----------------
Confidence 21 1234577789999999998776664432 2488888 65532211100
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCC--eEEEEEccCCceEEEeccCCcceeeeE
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
....++...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+..+.
T Consensus 300 --------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 300 --------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF 363 (719)
T ss_dssp --------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE
T ss_pred --------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE
Confidence 000111110000 00014579999996654 44444 67788887766 456666666788887
Q ss_pred EecCcCeEEeecC-----CCeEEEEecCC
Q 015301 363 WHPIYPMLISSSW-----DCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~-----dg~i~iw~~~~ 386 (409)
++ +++.|+..+. ++..++|.++.
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77 7776655544 48889998764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-23 Score=179.16 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=142.1
Q ss_pred ceeeEEecCceeEeeccceEEEEeeec-----------------CCCceeecCCCCeEEEEECCCCCEEE----EEeCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPV-----------------NGPWKVDGMNSRVYTSQFSNDGSFFV----AASQES 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~~s~~~~~l~----t~~~d~ 62 (409)
...+++|+++.++++++...+..+... ........|.+.|++++|+|+|++|| +++.|+
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 457899999887776554332221100 01112234677899999999999999 788999
Q ss_pred cEEEEEcCCC--------eeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 63 NIKVYNVDKN--------WKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 63 ~i~vw~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
+|+|||+.+. ..+.......+|...|.+++|+|+ +.+|++++.||.|++||+.++......
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---------- 188 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---------- 188 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE----------
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec----------
Confidence 9999998654 222233445668889999999998 889999999999999999876321110
Q ss_pred eecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-------CCCeEEEEEeCCCCcEEEE-eeC
Q 015301 134 FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFS-GSD 205 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~-~~~ 205 (409)
.+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..| ...|.+++|+ ++..++++ ...
T Consensus 189 -----~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~ 261 (434)
T 2oit_A 189 -----LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI-GTYVFAIVYAAA 261 (434)
T ss_dssp -----ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE-ETTEEEEEEEET
T ss_pred -----cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe-cCceEEEEEccC
Confidence 0244579999999999999999999999999998 5555555433 2379999999 66666644 334
Q ss_pred CC------eEEEecccc
Q 015301 206 DS------LCKVWDRRC 216 (409)
Q Consensus 206 dg------~i~iwd~~~ 216 (409)
+| .+++|+++.
T Consensus 262 dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 262 DGTLETSPDVVMALLPK 278 (434)
T ss_dssp TCCSSSCCEEEEEECCC
T ss_pred CCccCCCCceEEEEecc
Confidence 43 389999873
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-23 Score=175.86 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=169.3
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
..+...+..++|+|||+ |++++. ++.|++|+++++.. ........+...+..++|+|++++|++++ .++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 45667788999999999 555543 68999999977632 22222233444688899999999998887 78999999
Q ss_pred EcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeee--EEcC-CCCCe
Q 015301 113 DVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSL--RIPA-HKSDV 187 (409)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~--~~~~-~~~~v 187 (409)
++.. +............. .+........+.+++|+|+|+.+++...++.|.+|++. +++... .+.. ....+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGH----GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EECTTSCEEEEEEEECCCC----CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred EeCCCCCeeecceeecCCC----CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 9963 22221111110000 00001122358899999999955555558899999998 554332 2222 23467
Q ss_pred EEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCce--eeeeeccc------cceeEEEEcCCCCeEE-EEeCCCcEEE
Q 015301 188 NTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRA--NGVLMGHL------EGITFIDSRRDGRYFI-SNGKDQTTKL 257 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~------~~v~~~~~~~~~~~l~-~~~~dg~i~i 257 (409)
..++|+ |+++++++ ...++.+.+|++.. ..+.. ...+.... ..+..++|+|+|++|+ +...++.|.+
T Consensus 190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 190 RHLVFS-PDGQYAFLAGELSSQIASLKYDT--QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred ceEEEC-CCCCEEEEEeCCCCEEEEEEecC--CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 889999 78885555 56789999999752 12221 22222222 3478899999999874 4556899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-Ce
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~ 336 (409)
|++..... ...+..+..+. .....++|+|||++|++++.+ +.
T Consensus 267 ~~~~~~g~-------------------------------~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 267 FAVTADGH-------------------------------LTLIQQISTEG------DFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp EEECGGGC-------------------------------EEEEEEEECSS------SCCCEEEECTTSSEEEEEETTTTE
T ss_pred EEECCCCc-------------------------------EEEeEEEecCC------CCcCeEEECCCCCEEEEEEcCCCc
Confidence 99864110 01122222211 112355799999988888764 89
Q ss_pred EEEE--EccCCceE
Q 015301 337 VYIY--DLVSGAQV 348 (409)
Q Consensus 337 v~i~--d~~~~~~~ 348 (409)
|.+| |..+++..
T Consensus 310 v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 310 ATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECTTTCCEE
T ss_pred EEEEEEeCCCCeEE
Confidence 9999 54566554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-23 Score=175.32 Aligned_cols=244 Identities=11% Similarity=0.077 Sum_probs=181.4
Q ss_pred eEEEEEeCCCCcEEEEEec-------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 87 TITDTSLSPDQRFLVYASI-------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
.+..++|+|+++++++++. ++.|.+||..+++........ ..+..++|+|+++++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----------------LKPFGATINNTTQTLWF 105 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----------------SCCCSEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----------------CCcceEEECCCCCEEEE
Confidence 5889999999999888773 568999999887654332211 13677899999996665
Q ss_pred EEe-cCeEEEEECCCCeeeeEEcCCCCC---------eEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeee
Q 015301 160 AGS-DNFIYVYDLQANKCSLRIPAHKSD---------VNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 160 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
++. ++.|.+||..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||+. .++....+
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~~ 180 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTAI 180 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEEE
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEEe
Confidence 544 799999999999988877654432 7889999 7777776665 47899999964 56666666
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccc
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 307 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (409)
..+...+..++|+|+++++++++.++.|.+||+.+... +..+....
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~----------------------------------~~~~~~~~ 226 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI----------------------------------LSRKKLLD 226 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE----------------------------------EEEEECCC
T ss_pred cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE----------------------------------EEEEEcCC
Confidence 54556688999999999999999999999999887322 22222110
Q ss_pred ceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEE-eecCCCeEEEEecC
Q 015301 308 VLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIP 385 (409)
Q Consensus 308 ~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~ 385 (409)
. ........++++|+++++++++. ++.|.+||..+++.+..+.... ...++|+|++++++ +...++.|.+||+.
T Consensus 227 ~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 227 D--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp S--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 0 00112345678999997777665 4999999999999888887543 26799999999555 45578999999998
Q ss_pred CCcc
Q 015301 386 GIGE 389 (409)
Q Consensus 386 ~~~~ 389 (409)
+++.
T Consensus 303 ~~~~ 306 (353)
T 3vgz_A 303 SYKV 306 (353)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-23 Score=180.24 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=154.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----------eeee--eeecccccceEEEEEeCCCCcEEE----E
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----------KIQK--DIETKALRWTITDTSLSPDQRFLV----Y 102 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----------~~~~--~~~~~~~~~~v~~~~~s~~~~~l~----~ 102 (409)
....++.+++++++.++++++.|+ +++|+..... .... ......+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999888 9998753210 0000 001112345799999999999999 7
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
++.|+.|++||+.+......... ..+.......+|...|.+++|+|+ +.+|++++.||.|++||++++..+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQK----RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSC----CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCc----ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 88899999999976411000000 000011122356778999999997 8899999999999999999987776677
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEe-CCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNG-KDQ 253 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~-~dg 253 (409)
+|...|.+++|+ +++++|++|+.||.|++||++ +.....+.. |...+.+++|++++.++++.+ .||
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 789999999999 789999999999999999975 222222222 334899999999887765433 343
Q ss_pred ------cEEEeeCCCC
Q 015301 254 ------TTKLWDIRKM 263 (409)
Q Consensus 254 ------~i~iwd~~~~ 263 (409)
.+++|++++.
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=167.01 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=178.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
+...+..++|+|||++|++++.+ +.|.+|+++.. ..+........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999998875 79999998763 233333222223335777888 788777776 67899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCe-------e------ee
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANK-------C------SL 178 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-------~------~~ 178 (409)
++................+... .....+...+.+++|+|+|+++++++. ++.|.+|++.... . ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGP-DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCS-CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCC-CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9975432211111000000000 000112234788999999997776654 7899999887543 1 11
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCce--eeee---eccccceeEEEEcCCCCeEEEEeCC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVL---MGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
....+...+..++|+ |+++++++++ .++.|.+||+. .+.. ...+ ..+......++|+|+|++|+++..+
T Consensus 205 ~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 123345668899999 8888777766 68999999975 2222 2222 2233456799999999988776654
Q ss_pred --CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 253 --QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 253 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
+.|.+|++...... ...+..+.. . .....++|+|+|++|++
T Consensus 280 ~~~~i~v~~~~~~~g~------------------------------~~~~~~~~~-g------~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 280 KADGVAIFKVDETNGT------------------------------LTKVGYQLT-G------IHPRNFIITPNGKYLLV 322 (361)
T ss_dssp SSCEEEEEEECTTTCC------------------------------EEEEEEEEC-S------SCCCEEEECTTSCEEEE
T ss_pred CCCEEEEEEEcCCCCc------------------------------EEEeeEecC-C------CCCceEEECCCCCEEEE
Confidence 89999998631100 001111111 0 11234579999998888
Q ss_pred Ee-CCCeEEEEEc--cCCceEEEe-ccCCcceeeeEEe
Q 015301 331 GS-SDNSVYIYDL--VSGAQVAKL-DFHNAPVRDCCWH 364 (409)
Q Consensus 331 ~~-~dg~v~i~d~--~~~~~~~~~-~~~~~~v~~~~~s 364 (409)
++ .++.|.+|++ .+++..... ..+...+.++.|.
T Consensus 323 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 323 ACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 87 5789999654 466655443 2344578888885
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-23 Score=172.77 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=175.7
Q ss_pred CeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEe------------cC
Q 015301 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYAS------------IC 106 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~------------~d 106 (409)
.+.+++|+|+|++++ ++..++.|.+||+.+++......... .+...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 588999999998764 55567899999999886554332211 0222467899999999998886 57
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 186 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 186 (409)
+.|.+||+.+++....... ...+..++|+|++++|+++ ++.|.+||+.+++....+..+...
T Consensus 115 ~~i~v~d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA----------------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC----------------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred ceEEEEECCCCcEEEEEeC----------------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence 9999999987654322211 1136778999999988888 688999999999988777644311
Q ss_pred eEEEEEeCCCCcEEEEeeC-CC-----------------------eEEEecccccccCCce-eeeeeccccceeEEEEcC
Q 015301 187 VNTVCFADETGHLIFSGSD-DS-----------------------LCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~-dg-----------------------~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 241 (409)
..+.|+ +++..++..+. ++ .|.+||+. .++. ...+..+...+.+++|+|
T Consensus 177 -~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 177 -AETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp -TTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEECT
T ss_pred -CCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEECC
Confidence 123677 66665554432 22 46888875 3332 233445556788999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++++++++ ++.|.+||+.+.+ .+..+.... ....++|
T Consensus 251 dg~~l~~~--~~~v~~~d~~~~~----------------------------------~~~~~~~~~-------~~~~~~~ 287 (337)
T 1pby_B 251 AKTRAFGA--YNVLESFDLEKNA----------------------------------SIKRVPLPH-------SYYSVNV 287 (337)
T ss_dssp TSSEEEEE--ESEEEEEETTTTE----------------------------------EEEEEECSS-------CCCEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCc----------------------------------CcceecCCC-------ceeeEEE
Confidence 99998888 7899999987632 222222211 1235578
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
+|+|++|++++.++.|++||+.+++.+..+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99999999999999999999999999888875543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-22 Score=170.63 Aligned_cols=288 Identities=10% Similarity=0.031 Sum_probs=179.6
Q ss_pred EEEEEeCC--CcEEEEEcC--CCeeeeeeeec-ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC-CCccccccceec
Q 015301 54 FFVAASQE--SNIKVYNVD--KNWKIQKDIET-KALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-SSARESLANVTE 127 (409)
Q Consensus 54 ~l~t~~~d--~~i~vw~~~--~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~ 127 (409)
++++|+.. +.|.+|+++ ++. +...... ......+..++|+|++++|++++.+ .|.+|++. +++........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~-l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~- 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLT-CKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP- 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTE-EEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEEEccCCCcEEEEEEECCCCC-EEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-
Confidence 35555543 468887763 442 2221111 1122257789999999999988887 99999996 55432111100
Q ss_pred eeeeeeeecCCCCcceeeEEEEEcCCCCe--EEEEE-------------ecCeEEEEECC-CCeeeeEEc----CCCCCe
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFSTDGQE--LVAAG-------------SDNFIYVYDLQ-ANKCSLRIP----AHKSDV 187 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~v~d~~-~~~~~~~~~----~~~~~v 187 (409)
. .+ .+..++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+
T Consensus 81 --------~--~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 81 --------I--GG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp --------C--CS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred --------c--CC---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 0 00 1345889999995 44542 58899999997 465544333 255779
Q ss_pred EEEEEeCCCCcEEEEee-CCCeEEEecccccccCCce--eeeee--ccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCC
Q 015301 188 NTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVLM--GHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIR 261 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 261 (409)
.+++|+ |++++|++++ .++.|++||+.. .++. ...+. .|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 148 ~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 148 HGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 999999 8888887765 468999999741 2322 22222 23566899999999999888775 6899999875
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeee----cccceeeeeEEEEeee-ecCCCCEEEEEeCC-C
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK----GHSVLRTLIRCYFSPE-YSTAQKYIYTGSSD-N 335 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~s~~~~~l~~~~~d-g 335 (409)
......... ...+..+. ++............++ ++|||++|++++.+ +
T Consensus 224 ~~~g~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 224 PATHMPVYT--------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp TTTCCEEEE--------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred CCCCcEEEc--------------------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 311000000 00000000 1000000000234668 99999998877643 2
Q ss_pred -----eEEEEEcc-CCceEE---EeccCCcceeeeEEec---CcCeEEeecCC-CeEEEEecCCC
Q 015301 336 -----SVYIYDLV-SGAQVA---KLDFHNAPVRDCCWHP---IYPMLISSSWD-CNIVRWEIPGI 387 (409)
Q Consensus 336 -----~v~i~d~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iw~~~~~ 387 (409)
.|.+|++. +++... ....+...+..++|+| |+++|++++.+ +.|.+|++...
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 566543 2334555678899999 89999988764 89999998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=186.39 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=166.0
Q ss_pred cceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 85 RWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+|.+++|+|||+.||+++. ||.++||++.+++...... .+...+..++|+|+ +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---------------~~~~~~~~~~~spd-~~l~~~~~~ 84 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---------------EPINSVLDPHYGVG-RVILVRDVS 84 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---------------SCCSEECEECTTCS-EEEEEEECS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---------------ccccccccccCCCC-eEEEEeccC
Confidence 447999999999999999887 9999999986655432221 11135889999999 77776664
Q ss_pred --cCeEEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 163 --DNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 163 --d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+....+|.+.. +... .+... ..+...+|+ ++++ .+++.+.++.+.+||+. .+...... .+.. .+
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~----~g~~~~l~-~~~~--~~ 154 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGV-DTGEAVVFTGATEDRVALYALD----GGGLRELA-RLPG--FG 154 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEE-ECSSCEEEEEECSSCEEEEEEE----TTEEEEEE-EESS--CE
T ss_pred CCCcceEEEEEeccCCCccc-cccCC-CCceeeeeC-CCCCeEEEEecCCCCceEEEcc----CCcEEEee-cCCC--ce
Confidence 34445554432 2222 33322 234566888 4553 44444445556699974 44433333 3333 88
Q ss_pred EEEcCCCCeEEEEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 237 IDSRRDGRYFISNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
++|+|||++|++++.+ +.|++||+.+.. ...+..+.
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~----- 194 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGE----- 194 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSS-----
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCC-----
Confidence 9999999999988877 789999987632 22333333
Q ss_pred eEEEEeeeecCCCCEEEEEeCCC--eEEEEEccCCceEEEeccCCcceeeeE--------EecCcCeEEeecCCCeEEEE
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCC--------WHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~iw 382 (409)
.....++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|
T Consensus 195 -~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 195 -GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF 272 (582)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred -CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence 2336789999999999888888 8999999999887 7788888888888 99999989999999999999
Q ss_pred ec
Q 015301 383 EI 384 (409)
Q Consensus 383 ~~ 384 (409)
++
T Consensus 273 ~~ 274 (582)
T 3o4h_A 273 ID 274 (582)
T ss_dssp ET
T ss_pred EE
Confidence 99
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-21 Score=177.85 Aligned_cols=332 Identities=11% Similarity=0.051 Sum_probs=198.3
Q ss_pred ceeeEEecCceeEeeccce-EEEEeeecCCCceeecCCCC-----eEEEEECCCCCEEEEEeCC---------CcEEEEE
Q 015301 4 GREVNYSGRGRFSAADSCH-VLSRYLPVNGPWKVDGMNSR-----VYTSQFSNDGSFFVAASQE---------SNIKVYN 68 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---------~~i~vw~ 68 (409)
...++|+|||++++..... .++..........+.+|... ...++|||||++|+.++.+ +.+.+||
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 3578999999998876433 23333223333455666543 2447899999999998875 5677999
Q ss_pred cCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC-----Ccce
Q 015301 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD-----EDEF 143 (409)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 143 (409)
+.+++.. . ...+...+...+|||||+.||.+. ++.|++|++.+++......... ....+..... +.-.
T Consensus 99 ~~~~~~~-~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~--~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 99 LNKRQLI-T---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK--EDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp TTTTEEC-C---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB--TTTEEESBCCHHHHHHTSS
T ss_pred CCCCcEE-E---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC--ccceecCcccccccchhcC
Confidence 9998432 2 333445799999999999999885 7899999998876433221110 0000000000 0001
Q ss_pred eeEEEEEcCCCCeEEEEEecC------------------------------------eEEEEECCC---Ce--eeeEEc-
Q 015301 144 GIFSVKFSTDGQELVAAGSDN------------------------------------FIYVYDLQA---NK--CSLRIP- 181 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~------------------------------------~i~v~d~~~---~~--~~~~~~- 181 (409)
....+.|||||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 234589999999999876432 588899988 73 223343
Q ss_pred -----CCCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCc----e--eeee--ecccccee-----EEEE
Q 015301 182 -----AHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGR----A--NGVL--MGHLEGIT-----FIDS 239 (409)
Q Consensus 182 -----~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~----~--~~~~--~~~~~~v~-----~~~~ 239 (409)
+|...+..++|+ |++++++.... +..|.+||+. .+. + ...+ ..|...+. ...|
T Consensus 252 ~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp CHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred CccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECC----CCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 377789999999 78886665533 3479999975 333 1 1222 34554444 7889
Q ss_pred cCCCCeEE-EEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 240 RRDGRYFI-SNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 240 ~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
+|||+.|+ ..+. +| .|.+||+..... .....+.-.. ..
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~----------------------------------~~lT~g~~~v----~~ 368 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDC----------------------------------TFITKGTWEV----IG 368 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSC----------------------------------EESCCSSSCE----EE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCce----------------------------------EecccCCEEE----EE
Confidence 99999876 5553 44 577788765221 1111111100 11
Q ss_pred EEeeeecCCCCEEEEEeC----CC--eEEEEEccCCceEEEecc----CCcceeeeEEecCcCeEEeecC---CCeEEEE
Q 015301 316 YFSPEYSTAQKYIYTGSS----DN--SVYIYDLVSGAQVAKLDF----HNAPVRDCCWHPIYPMLISSSW---DCNIVRW 382 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~----dg--~v~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~---dg~i~iw 382 (409)
.. .++ ++.++++++. .+ .|+..++..++....+.. ....+..+.|+|++++++.... -..+.++
T Consensus 369 ~~--~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 369 IE--ALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EE--EEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EE--EEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 11 122 2334444443 23 455555544444334432 2357889999999996654332 2467788
Q ss_pred ecCCCc
Q 015301 383 EIPGIG 388 (409)
Q Consensus 383 ~~~~~~ 388 (409)
+...++
T Consensus 446 ~~~~~~ 451 (740)
T 4a5s_A 446 SSVNDK 451 (740)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 876543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-21 Score=162.76 Aligned_cols=277 Identities=10% Similarity=0.058 Sum_probs=178.4
Q ss_pred eeeEEecCceeEeeccce-EEEEeeecCC--CceeecCC-CCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCH-VLSRYLPVNG--PWKVDGMN-SRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~-~~~~~~~~~~--~~~l~~h~-~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
..++++++++++++.... .+..+-.... ...+..+. ..+..++|+|+|++++ +...++.|.+||+.+++......
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888876664432 2222221111 12333332 2688999999998665 55568999999999886554332
Q ss_pred eccc---ccceEEEEEeCCCCcEEEEEecC------------CEEEEEEcCCCccccccceeceeeeeeeecCCCCccee
Q 015301 80 ETKA---LRWTITDTSLSPDQRFLVYASIC------------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFG 144 (409)
Q Consensus 80 ~~~~---~~~~v~~~~~s~~~~~l~~~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (409)
.... ....+..++|+|++++|++++.+ +.|.+||+.+++......... +...
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~ 149 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-------------MPRQ 149 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-------------CCSS
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-------------CCCc
Confidence 1110 02236789999999999998865 899999998765332221111 1114
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC------------------------CeEEEEEeCCCCc--
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS------------------------DVNTVCFADETGH-- 198 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~-- 198 (409)
+.+++|+|+|+ +++++ +.|.+||+.+++.+..+..+.. ....++++ +++.
T Consensus 150 ~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~ 225 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQD 225 (349)
T ss_dssp CCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred ccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCC
Confidence 78899999999 66553 4599999999988777654320 22345554 2221
Q ss_pred ---------EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 199 ---------LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 199 ---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
++.....++.+++|++ ..+...+..++++| ++++++++ ++.|.+||+.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---- 286 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEF-------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---- 286 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEE-------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE----
T ss_pred ccccccceeEEEEeccCCcEEeccc-------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe----
Confidence 1112233445555553 22455678999999 99998888 8899999998732
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
.+..+.... ....++++|++++|++++.++.|++||+.+++.+
T Consensus 287 ------------------------------~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 287 ------------------------------LIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ------------------------------EEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ------------------------------EEEEEcCCC-------CccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 222222111 1235578999999998888999999999999988
Q ss_pred EEeccC
Q 015301 349 AKLDFH 354 (409)
Q Consensus 349 ~~~~~~ 354 (409)
..++.+
T Consensus 330 ~~~~~~ 335 (349)
T 1jmx_B 330 KNIKLP 335 (349)
T ss_dssp EEEECS
T ss_pred eeeecC
Confidence 888654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-22 Score=183.68 Aligned_cols=289 Identities=12% Similarity=0.084 Sum_probs=187.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc---ccceEEEEEeCCCCcEEEEEecC---------C
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA---LRWTITDTSLSPDQRFLVYASIC---------A 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d---------g 107 (409)
.....+++|+|||++++++ |++|++||+.++..... +.... .......+.|||||++|++++.+ +
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 3456789999999998886 89999999998865432 22211 11123458899999999998875 5
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~ 186 (409)
.+.+||+.+++...+.. +...+...+|||||+.|+.+ .++.|++|++.+++..+.. .++...
T Consensus 93 ~~~~~d~~~~~~~~l~~----------------~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEER----------------IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EEEEEETTTTEECCSSC----------------CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred EEEEEECCCCcEEEccc----------------CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 67799999987543322 12258899999999999888 5789999999888754422 233222
Q ss_pred e-----------------EEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 187 V-----------------NTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 187 v-----------------~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+ ..+.|+ |+++.|+.++.|. .+.+|++....... .+...+..+.+.+.|..
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~--- 224 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV--- 224 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC---
T ss_pred eecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc---
Confidence 2 358999 8999888877554 48888864211110 34455677778777653
Q ss_pred EeCCCcEEEeeCCC---CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 249 NGKDQTTKLWDIRK---MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 249 ~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
.....|.+||+.+ ..... ...+............+..++|||||
T Consensus 225 -~~~~~l~v~d~~~~~~~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 225 -NPTVKFFVVNTDSLSSVTNAT--------------------------------SIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp -CCEEEEEEEETTSCCSSSCCC--------------------------------EEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred -CCeeEEEEEECCCCCCCCcce--------------------------------EEEecCCccCCCCCeEEEEEEEeCCC
Confidence 2233689999876 42100 01111000000011345677899999
Q ss_pred CEEEEEeC----CCeEEEEEccCCc----eE--EEe--ccCCccee-----eeEEecCcCeEE-eec-CC--CeEEEEec
Q 015301 326 KYIYTGSS----DNSVYIYDLVSGA----QV--AKL--DFHNAPVR-----DCCWHPIYPMLI-SSS-WD--CNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~----dg~v~i~d~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l~-s~~-~d--g~i~iw~~ 384 (409)
++++.... +..|++||+.+++ +. ..+ ..|...|. .+.|+|||+.|+ ..+ .+ ..|++|++
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 97766543 3479999999887 22 222 34665554 789999999766 554 33 46888888
Q ss_pred CCCcccCC
Q 015301 385 PGIGEAPL 392 (409)
Q Consensus 385 ~~~~~~~~ 392 (409)
..+....+
T Consensus 352 ~~~~~~~l 359 (740)
T 4a5s_A 352 DKKDCTFI 359 (740)
T ss_dssp TCSSCEES
T ss_pred CCCceEec
Confidence 76654433
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-20 Score=172.51 Aligned_cols=322 Identities=14% Similarity=0.058 Sum_probs=198.5
Q ss_pred ceeeEEecCceeEeec--c---ceEEEEeeecCCCceeecCCCCeE---------EEEEC--CCCCE-EEEEeC-CCcEE
Q 015301 4 GREVNYSGRGRFSAAD--S---CHVLSRYLPVNGPWKVDGMNSRVY---------TSQFS--NDGSF-FVAASQ-ESNIK 65 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~--~---~~~~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~~~~~-l~t~~~-d~~i~ 65 (409)
.+.+++|+++.+.+.. . ...++..........+..|...+. ...|+ |||+. |+.++. +..|.
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~ 105 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLY 105 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEE
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEE
Confidence 4678899988766654 1 233444444445567778877776 66665 99998 776654 55677
Q ss_pred EEEcC--C-Ceeeeeeeecc--cccceEEEEEeCCCCcEEEEEecC----------CEEEEEEcCC------Cccccccc
Q 015301 66 VYNVD--K-NWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASIC----------AIVNIVDVGS------SARESLAN 124 (409)
Q Consensus 66 vw~~~--~-~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~~w~~~~------~~~~~~~~ 124 (409)
+|++. + + ....+.... .+...+..++|+|||+.|++++.+ ..|++||+.+ ++......
T Consensus 106 ~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 106 AFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 77765 2 3 322222211 145578999999999999998876 5899999987 44322210
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--------CeEEEEECC-CC---eeeeEEcCCCCCeEEEEE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQ-AN---KCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~ 192 (409)
. +...+..++|+|||++|+.++.+ ..|++||+. ++ +.......|...+..++|
T Consensus 185 --~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 185 --D-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp --S-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred --c-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 0 11247788999999999988765 379999998 56 444444556788999999
Q ss_pred eCCCCcEEEEeeCCC--eEEEecccccccCCceeeeeeccccc--------eeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 193 ADETGHLIFSGSDDS--LCKVWDRRCFISKGRANGVLMGHLEG--------ITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+ ++++++++++.++ .|.+||+. .+........+... +..++|+|++++++++.. +.+++|.+..
T Consensus 250 s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 250 A-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp C-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred C-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 9 7888888888888 56666642 33333222222221 467889999999999988 9999994432
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC--eEEEE
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--SVYIY 340 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~v~i~ 340 (409)
. ...+..+..+... . ..++ +++++.-++++++.+. .|+++
T Consensus 324 ~---------------------------------~~~~~~l~~~~~~--~-~~~~--s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 324 E---------------------------------SGELVDAAGPWTE--W-AATL--TVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp T---------------------------------TTEEEECCSSCCE--E-EEEE--EEETTEEEEEEEETTEEEEEEEE
T ss_pred C---------------------------------CCcEEEecCCCCe--E-EEEE--ecCCCEEEEEEcCCCCCCEEEEE
Confidence 1 0112333333211 1 1111 2333333344445553 56666
Q ss_pred EccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
|+.+++.......+...+....+.+.....+.+..+..|..|-+.
T Consensus 366 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 366 DTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp ETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 776777654445555455555555555555555444467666553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-22 Score=170.93 Aligned_cols=294 Identities=12% Similarity=0.026 Sum_probs=181.5
Q ss_pred CeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 42 RVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
.+.+++|||||++|+....+ ..|.+|++.+++.. ..... .......+.|+||++.|+.++.++.|++||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEG--KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCS--SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecC--CCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 37889999999998877543 46888899887432 22211 11112237899999999999999999999998876
Q ss_pred cccccceecee--ee--eeeecCCCCcceeeEEEEEcCCCCeEEEE-----EecCeEEEEECCCCeeeeEEcCCCCCeEE
Q 015301 119 RESLANVTEIH--KG--LDFSADGDEDEFGIFSVKFSTDGQELVAA-----GSDNFIYVYDLQANKCSLRIPAHKSDVNT 189 (409)
Q Consensus 119 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~v~~ 189 (409)
........... .+ +.+.............+.|+|+++.++.. ..+..|++||+.+++..... .+...+..
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~ 192 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGH 192 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccccc
Confidence 54332211100 00 00000000000000013578888877654 34678999999988765544 46778899
Q ss_pred EEEeCCCCcEEEEeeCC------CeEEEecccccccCCceeeeeecc--ccceeEEEEcCCCCeEEEEeCC-----CcEE
Q 015301 190 VCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKD-----QTTK 256 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 256 (409)
+.|+|.++..|+..+.+ ..|.+||+. ... ...+..+ ...+..+.|+|+|++|+..+.+ +.|.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 99993267766665543 357788753 222 2222222 2357889999999988777654 4499
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEe---
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGS--- 332 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~--- 332 (409)
+||+.+... ..+..... . .+.|+| +|++++.++
T Consensus 268 ~~d~~~g~~-----------------------------------~~l~~~~~---~-----~~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 268 KANPETLEN-----------------------------------EEVMVMPP---C-----SHLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp EECTTTCCE-----------------------------------EEEEECCS---E-----EEEEECSSSSEEEEEECCC
T ss_pred EEECCCCCe-----------------------------------EEeeeCCC---C-----CCCccCCCCceEEEecCCc
Confidence 999876321 11111110 0 157888 999888765
Q ss_pred -------------CCCeEEEEEccCCceEEEeccCCc-----------ceeeeEEecCcCeEEeecC-CCeEEEE--ecC
Q 015301 333 -------------SDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPIYPMLISSSW-DCNIVRW--EIP 385 (409)
Q Consensus 333 -------------~dg~v~i~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~i~iw--~~~ 385 (409)
.++.|++||+.+++. ..+..+.. .+..++|+||++.|+.++. ++...+| ++.
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 347899999988765 34444444 2677899999997776654 4554555 444
Q ss_pred CCc
Q 015301 386 GIG 388 (409)
Q Consensus 386 ~~~ 388 (409)
.+.
T Consensus 384 ~~~ 386 (396)
T 3c5m_A 384 ESY 386 (396)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=158.27 Aligned_cols=283 Identities=12% Similarity=0.023 Sum_probs=186.3
Q ss_pred CCCCEEEEEe------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEE
Q 015301 50 NDGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVD 113 (409)
Q Consensus 50 ~~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~ 113 (409)
++++++++.. .|+.|.+||..+++.+.... . .. .. .++|+||+++|+++. .++.|.+||
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~-~--g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP-T--AF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE-C--CE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEec-C--CC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 3566666543 36799999998886554322 2 22 23 899999999999886 367899999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeE-EcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~ 190 (409)
..+.+........... ..+......++++|+|++|+++.. ++.|.+||+.+++.+.. +.. .. ...+
T Consensus 88 ~~t~~~~~~i~~~~~~---------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v 156 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKR---------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSV 156 (361)
T ss_dssp TTTCCEEEEEEECTTB---------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEE
T ss_pred CcCCcEEEEEEcCccc---------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-ccee
Confidence 9876553332211100 001123567999999999999875 57899999999988877 553 22 2335
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceee------eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG------VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.+.|.....+++.+.||.+.+|++. ..++... .+.....++ .+.+++++..++..+.++.+.++|+....
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~---~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLG---EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEEC---TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEcCCCCeeEEEECCCCcEEEEEEC---CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 5664555788888999999999864 1233221 111222222 23346777777777888999999986522
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC-------
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS------- 333 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~------- 333 (409)
... +..+.... ...........++++|+++.++++..
T Consensus 233 ~~~--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 233 VKV--------------------------------DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CEE--------------------------------EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred cee--------------------------------cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 110 00000000 00000000012367888888777643
Q ss_pred ----CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 334 ----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 334 ----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+.|.+||+.+++.+.++..+. +.+++|+||+++|++++. +.|.+||..++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999999999999998777 999999999999998886 99999999887
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-20 Score=156.45 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=178.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeeccc---ccceEEEEEeCCCCcEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA---LRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~ 101 (409)
.+..+..+ .++|+|||++|+++. .+++|.+||..+.+.+........ +...+..++++|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44444444 899999999999886 257799999988766554432211 112456789999999999
Q ss_pred EEec--CCEEEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCC-Cee
Q 015301 102 YASI--CAIVNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQA-NKC 176 (409)
Q Consensus 102 ~~~~--dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~-~~~ 176 (409)
++.. ++.|.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~-----------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAA-----------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGT-----------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCC-----------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 8874 57999999998765322 1111 12235567765 5677778899999998865 444
Q ss_pred eeE------EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--c----c----ccceeEEEEc
Q 015301 177 SLR------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--G----H----LEGITFIDSR 240 (409)
Q Consensus 177 ~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~----~----~~~v~~~~~~ 240 (409)
... +..+..++ .+.+. +++..++..+.++.+.++|+.. ........+. . + ......++++
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSG--DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSS--SSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred eeeccccceEcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecC--CCceecccccccCccccccccccCCeeEEEEe
Confidence 311 12222222 23334 4566667777889999999741 1111111110 0 0 1122237899
Q ss_pred CCCCeEEEEeC-----------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 241 RDGRYFISNGK-----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 241 ~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
|+++.++++.. .+.|.+||+.+ .+.+..+..+.
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~-- 306 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD-- 306 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--
Confidence 99888777643 34799999987 33444444432
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC--ceEEEeccCCcceeeeEEecCcC
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
.+.++++|||++|++++. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 307 ------p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ------ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ------CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ------eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 345689999999998887 99999999999 99999876777888999999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=171.55 Aligned_cols=300 Identities=10% Similarity=0.030 Sum_probs=191.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeeeeeeeecccccceEE---------EEEeC--CCCcE-
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAA--SQESNIKVYNVDKNWKIQKDIETKALRWTIT---------DTSLS--PDQRF- 99 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~- 99 (409)
..+.+|...|..++|++++-+++.. +.++...||....+.....+. .+...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL---PAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS---CTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC---CCCccccccccccCCccceeeeecCCCeE
Confidence 3577899999999999887666766 557889999964443333322 2222334 45555 99998
Q ss_pred EEEEec-CCEEEEEEcC--C-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----------Ce
Q 015301 100 LVYASI-CAIVNIVDVG--S-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----------NF 165 (409)
Q Consensus 100 l~~~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~ 165 (409)
|+.++. +..|.++++. + ++........ ...+...+..++|+|||+.|++++.+ ..
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 776654 5567777765 2 3322111100 00133468899999999999998877 58
Q ss_pred EEEEECCC------CeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCC---ceeeee
Q 015301 166 IYVYDLQA------NKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKG---RANGVL 227 (409)
Q Consensus 166 i~v~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~---~~~~~~ 227 (409)
|++||+.+ ++. ..+. .+...+..++|+ |+++.|+.++.+ ..|++||+. ..+ ......
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~---~~g~~~~~~~l~ 237 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVT---EDGRFADTRTLL 237 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEEC---TTSCEEEEEEEE
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEEC---CCCcccccEEeC
Confidence 99999987 554 4454 566778889999 899999887755 379999964 123 333334
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
..|...+..+.|+|||++++++..++ .|.+||+.+...... ...
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l----------------------------------~~~ 283 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL----------------------------------CRR 283 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES----------------------------------SCC
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec----------------------------------ccc
Confidence 44568899999999999878887788 566666544221110 000
Q ss_pred ccceeee--eEEEEeeeecCCCCEEEEEeCCCeEEEE--EccCCceEEEeccCCcceeee-EEecCcCeEEeecCCC--e
Q 015301 306 HSVLRTL--IRCYFSPEYSTAQKYIYTGSSDNSVYIY--DLVSGAQVAKLDFHNAPVRDC-CWHPIYPMLISSSWDC--N 378 (409)
Q Consensus 306 ~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg--~ 378 (409)
+...... .......+++|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+. .
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 0000000 000113467889999999998 999999 544444 67788787778777 5544333455556554 4
Q ss_pred EEEEecCCCc
Q 015301 379 IVRWEIPGIG 388 (409)
Q Consensus 379 i~iw~~~~~~ 388 (409)
|++||+.+++
T Consensus 362 i~~~d~~~g~ 371 (662)
T 3azo_A 362 VVELDTVTGR 371 (662)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 5555655543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-20 Score=156.54 Aligned_cols=251 Identities=10% Similarity=0.065 Sum_probs=164.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeeeeeecccccceEEEEEeCCCCcE--EEEEe-----------
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRF--LVYAS----------- 104 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~----------- 104 (409)
....+..++|+|||++|++++.+ .|.+|+++ ++.... ....... +.+..++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568899999999999999887 89999997 664332 2111111 12445899999995 44553
Q ss_pred --cCCEEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECC-CCeee--
Q 015301 105 --ICAIVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ-ANKCS-- 177 (409)
Q Consensus 105 --~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~-~~~~~-- 177 (409)
.++.+.+|++.. ++........ . ..+...+.+++|+|+|++++++.. ++.|.+||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~--------~---~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNY--------E---YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEE--------E---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred ecCCceEEEEccCCCCcCcceEeeE--------E---eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 689999999974 3322111100 0 012235889999999998887764 6799999998 67643
Q ss_pred eEEc--CCCCCeEEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCcee------eeee----cccc------ceeEEE
Q 015301 178 LRIP--AHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRAN------GVLM----GHLE------GITFID 238 (409)
Q Consensus 178 ~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~----~~~~------~v~~~~ 238 (409)
..+. .|...+..++|+ |+++++++++. ++.|.+|++.. ..+... ..+. +|.. .+..++
T Consensus 184 ~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDP--ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECT--TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred eeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeC--CCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 2333 246679999999 88988877764 78999998641 122221 1121 1222 578999
Q ss_pred -EcCCCCeEEEEeCCC------cEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee---eeecccc
Q 015301 239 -SRRDGRYFISNGKDQ------TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA---TYKGHSV 308 (409)
Q Consensus 239 -~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 308 (409)
|+|||++|+++..+. .|.+|++... +.... ....+.
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~---------------------------------g~~~~~~~~~~~~~- 306 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDC---------------------------------GSIEKQLFLSPTPT- 306 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTT---------------------------------SCEEEEEEEEECSS-
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCC---------------------------------CCEEEeeeeeecCC-
Confidence 999999888766432 8999998631 11000 011110
Q ss_pred eeeeeEEEEeeeecC---CCCEEEEEeCC-CeEEEEEccCC
Q 015301 309 LRTLIRCYFSPEYST---AQKYIYTGSSD-NSVYIYDLVSG 345 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~v~i~d~~~~ 345 (409)
.....++++| ||++|++++.+ +.|.+|++...
T Consensus 307 -----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 -----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -----CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0112346788 79999998875 89999998765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=161.65 Aligned_cols=231 Identities=9% Similarity=0.008 Sum_probs=145.2
Q ss_pred eEEecCceeEeeccc-e---EEEEee-ecCCCce-eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 7 VNYSGRGRFSAADSC-H---VLSRYL-PVNGPWK-VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~-~---~~~~~~-~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+|||||++++.... . .++.+- ....... ..+|...+..++|+|||+.|+.++.++.|++||+.+++.... ..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~-~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV-YQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE-EE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee-ee
Confidence 789999997665432 1 122221 2222223 335555666788999999999999999999999998854432 22
Q ss_pred cccccceEEEE--EeCCCCcEEEEE----------------------ecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 81 TKALRWTITDT--SLSPDQRFLVYA----------------------SICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 81 ~~~~~~~v~~~--~~s~~~~~l~~~----------------------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
... ..+... .++|+++.++.. ..+..|.+||+.+++.......
T Consensus 120 ~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------- 186 (388)
T 3pe7_A 120 VPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----------- 186 (388)
T ss_dssp CCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-----------
T ss_pred chh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-----------
Confidence 222 233333 458999988743 2346899999988764332211
Q ss_pred CCCCcceeeEEEEEcC-CCCeEEEEEec------CeEEEEECCCCeeeeEEcCCC--CCeEEEEEeCCCCcEEEEee-CC
Q 015301 137 DGDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAHK--SDVNTVCFADETGHLIFSGS-DD 206 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~-~d 206 (409)
...+..++|+| +|+.|+....+ ..|.++|...++.. .+..+. ..+..++|+ |+++.|+..+ .+
T Consensus 187 -----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~ 259 (388)
T 3pe7_A 187 -----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWV-PDGSALVYVSYLK 259 (388)
T ss_dssp -----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEEC-TTSSCEEEEEEET
T ss_pred -----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceEC-CCCCEEEEEecCC
Confidence 11478899999 99999887753 37888888765543 343343 257788999 7888665543 22
Q ss_pred C----eEEEecccccccCCc--eeeeeeccccc---eeEEEEcCCCCeEEEE---------eCCCcEEEeeCCC
Q 015301 207 S----LCKVWDRRCFISKGR--ANGVLMGHLEG---ITFIDSRRDGRYFISN---------GKDQTTKLWDIRK 262 (409)
Q Consensus 207 g----~i~iwd~~~~~~~~~--~~~~~~~~~~~---v~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~ 262 (409)
+ .|++||+. .++ .+....++... ...+.|+|||+.|+.. ..+..|.+||+.+
T Consensus 260 ~~~~~~l~~~d~~----~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 260 GSPDRFIYSADPE----TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp TCCCEEEEEECTT----TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CCCcceEEEEecC----CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 2 39999975 333 22222221110 1223689999988754 4466899999876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-19 Score=149.17 Aligned_cols=258 Identities=11% Similarity=0.152 Sum_probs=172.5
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---C-
Q 015301 41 SRVYTSQFSNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A- 107 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g- 107 (409)
..+..+++ ||++++... .++.|.+|+++++.. ..+ ..+..++|+|||+.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45777888 898887642 256799999988743 222 257889999999999988754 3
Q ss_pred -EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------------------
Q 015301 108 -IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------------------ 162 (409)
Q Consensus 108 -~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 162 (409)
.|.+|++.+++....... .. +..++|+|+|+.|+.++.
T Consensus 85 ~~l~~~~~~~g~~~~l~~~----------------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEA----------------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE----------------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred ceEEEEECCCCceEEEEcC----------------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 477788877654322111 11 788999999999988864
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-------eEEEecccccccCCceeeeeecccc
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-------LCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
...|++||+.+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.+. .+. ...+..+ .
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~-~ 217 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK-V 217 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-E
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-c
Confidence 25799999998887445544 3 78899999 788 777776542 45666543 222 2333334 4
Q ss_pred ceeEEEEcCCCCeEEEEeCC--------CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 233 GITFIDSRRDGRYFISNGKD--------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.+..+ +|+|++|+..+.+ ..|.+|| +. .......
T Consensus 218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~~ 259 (347)
T 2gop_A 218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGILD 259 (347)
T ss_dssp SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESST
T ss_pred ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEeccc
Confidence 44444 9999998877754 3577777 21 1111111
Q ss_pred cccceeeeeEEEEe-eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE-EEE
Q 015301 305 GHSVLRTLIRCYFS-PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI-VRW 382 (409)
Q Consensus 305 ~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iw 382 (409)
.+. ..+.. +.|+ ++ ++++++.++.++|| +.+++.... ..+...|.+++|+| .++++++.++.. .+|
T Consensus 260 ~~~------~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 260 EVD------RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp TCC------SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred cCC------cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 111 11122 5678 78 89999999999999 886665444 34577899999999 677777666654 677
Q ss_pred ecC
Q 015301 383 EIP 385 (409)
Q Consensus 383 ~~~ 385 (409)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-19 Score=148.96 Aligned_cols=284 Identities=10% Similarity=0.012 Sum_probs=186.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|.+++|++++..++..+.++.++.|. +....... .+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS---KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE---SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEe---ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4578889999988888778888999993 22332222 22335789999999998888888999999999876543
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEc--CCCCCeEEEEEeC
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIP--AHKSDVNTVCFAD 194 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~ 194 (409)
..... +...+.+++++++|+++++...+ +.|.+||..+++....+. .+...+.+++++
T Consensus 80 ~~~~~---------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d- 143 (333)
T 2dg1_A 80 RPFVS---------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD- 143 (333)
T ss_dssp EEEEC---------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-
T ss_pred EEeeC---------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-
Confidence 22110 11258999999999877766555 689999998776543332 245678999999
Q ss_pred CCCcEEEEeeC------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcc-c
Q 015301 195 ETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSS-N 266 (409)
Q Consensus 195 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~ 266 (409)
++++++++... .+.|..+|.. .+. ...+..+...+..++|+|+++.|+. ...++.|.+||+..... .
T Consensus 144 ~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 144 SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred CCCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 78887776653 3556666632 222 2223334456788999999986654 45678999999864110 0
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.... ......+.++ .....++++++|+++++...++.|.+||. +++
T Consensus 219 ~~~~--------------------------~~~~~~~~~~-------~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~ 264 (333)
T 2dg1_A 219 QPFG--------------------------ATIPYYFTGH-------EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY 264 (333)
T ss_dssp EEEE--------------------------EEEEEECCSS-------SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC
T ss_pred cccc--------------------------ceEEEecCCC-------CCCCceEECCCCCEEEEEcCCCEEEEECC-CCC
Confidence 0000 0000001110 12234678889998888878899999998 577
Q ss_pred eEEEeccCCc------ceeeeEEecCcCeEEeecCC------CeEEEEecC
Q 015301 347 QVAKLDFHNA------PVRDCCWHPIYPMLISSSWD------CNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~ 385 (409)
.+..+..+.. .+.+++|+||++.|+.++.+ +.|...++.
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 7777654433 68999999998766655444 245555544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-18 Score=140.22 Aligned_cols=244 Identities=14% Similarity=0.147 Sum_probs=171.6
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-cCCCCeEEEEEe-
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGS- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~- 162 (409)
-..+.+++++++++++++...++.|.+||...... ..... ......+...+..+++ .+++.++++...
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~~~---------~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-FQFGE---------CGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-EEECC---------BSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-EEecc---------cCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 34689999999999888888899999999863321 11110 0011123345889999 467766655533
Q ss_pred cCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEE
Q 015301 163 DNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDS 239 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~ 239 (409)
++.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||. .+.....+. .+...+..+++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEE
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcC-----CCCEEEEeCCCCccCCcEEEEE
Confidence 78999999 5677666664 344678999999 78888888788899999995 234444332 34456899999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+++++++++...++.|.+||... ..+..+...... .....+
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~----~~p~~i 212 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGIT----NYPIGV 212 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTS----CSEEEE
T ss_pred CCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCcc----CCCcEE
Confidence 99999888777889999999753 112222211100 122356
Q ss_pred eecCCCCEEEEEeCCC-eEEEEEccCCceEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 320 EYSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+++++++ +.|+.|++|++..
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 7889999888888776 9999995 6777777765543 4779999999987777 5799999999865
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-19 Score=148.13 Aligned_cols=245 Identities=11% Similarity=0.106 Sum_probs=173.7
Q ss_pred ceEEEEEeCCCCcEEEEEecC------------------------CEEEEEEcCCCccccccceeceeeeeeeecCCCCc
Q 015301 86 WTITDTSLSPDQRFLVYASIC------------------------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDED 141 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d------------------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (409)
+.+.+++++|+|+++++...+ +.|.+||..+++...... ..+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~ 89 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------------KNL 89 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------------TTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------------CCc
Confidence 369999999999998887766 479999988776532111 012
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEE---------cCCCCCeEEEEEeCCCCcEEEEee-CCCeEE
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---------PAHKSDVNTVCFADETGHLIFSGS-DDSLCK 210 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 210 (409)
...+..++++|+|+++++...++.|++||..... .+..+ ..+...+..++++|.+++++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 2257899999999988777778999999986542 44444 244557899999943888888886 689999
Q ss_pred EecccccccCCceeeeeec----------cccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMG----------HLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+||. .+.....+.. +......++++|+ +.++++...++.|++||..+..
T Consensus 170 ~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------------- 229 (329)
T 3fvz_A 170 QFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------------- 229 (329)
T ss_dssp EECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------------
T ss_pred EEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------------
Confidence 9994 3444444432 2234789999998 7777777788999999987522
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC------CCCEEEEEeCCCeEEEEEccCCceEEEec-
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST------AQKYIYTGSSDNSVYIYDLVSGAQVAKLD- 352 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~- 352 (409)
.+..+....... ..+.++++| +|+..++...+..|++|+..+++.+..+.
T Consensus 230 -------------------~~~~~~~~~~~~----~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 230 -------------------FVREIKHASFGR----NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp -------------------EEEEECCTTTTT----CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred -------------------EEEEEeccccCC----CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 222222111101 112334555 34444444456689999999999998873
Q ss_pred --cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 353 --FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 --~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
++...+..++++|+|.++++...++.|++|++...
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 56677899999999988888888999999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-18 Score=140.68 Aligned_cols=247 Identities=12% Similarity=0.121 Sum_probs=171.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec---ccccceEEEEEe-CCCCcEEEEEec-CCEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET---KALRWTITDTSL-SPDQRFLVYASI-CAIVNI 111 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~~ 111 (409)
.+|-..+.+++++|+|+++++...++.|.+||.+.. ........ ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 456678999999999998888888999999998743 33322211 123346899999 577776666643 889999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNT 189 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~ 189 (409)
||. +++....... .+...+..++++++|+.+++...++.|.+||.. ++.+..+. .+...+..
T Consensus 105 ~d~-~g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGA--------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 168 (286)
T ss_dssp ECT-TSCEEEEECT--------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred ECC-CCcEEEEecC--------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEE
Confidence 994 3332211100 112247899999999877776678899999964 55555553 34567899
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCCccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSN 266 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~ 266 (409)
++++ ++++++++...++.|++||. .+..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 169 i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---- 238 (286)
T 1q7f_A 169 VVVN-DKQEIFISDNRAHCVKVFNY-----EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---- 238 (286)
T ss_dssp EEEC-SSSEEEEEEGGGTEEEEEET-----TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----
T ss_pred EEEC-CCCCEEEEECCCCEEEEEcC-----CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----
Confidence 9999 78888888888999999995 33444444332 35688999999999888887776 999999543
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+..+..+... .....++++|+|+++++ +.++.|++|++....
T Consensus 239 -------------------------------~~~~~~~~~~~~----~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 239 -------------------------------QLISALESKVKH----AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp -------------------------------CEEEEEEESSCC----SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred -------------------------------CEEEEEcccCCC----CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 223333322211 11345678899987777 579999999986543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-18 Score=156.50 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=184.9
Q ss_pred CCCCEEEEEeCC-C----cEEEEEcCCCeeeeeeee----cccccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcC
Q 015301 50 NDGSFFVAASQE-S----NIKVYNVDKNWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (409)
Q Consensus 50 ~~~~~l~t~~~d-~----~i~vw~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~ 115 (409)
|+|++++....+ + .+.+.+...+. ...++. ..++...+..++|||||++||.+..++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGE-ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSC-CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCC-cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 888887755432 1 33444433332 222211 122444688999999999999876543 89999999
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe----------------EEEEECCCCeee--
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF----------------IYVYDLQANKCS-- 177 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~v~d~~~~~~~-- 177 (409)
+++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 160 tg~~~~~~~-~---------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 160 GAKELPDVL-E---------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp TTEEEEEEE-E---------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred CCCCCcccc-c---------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 887543211 0 002567999999999999887765 999999887632
Q ss_pred eEE--cCCCCCeEEEEEeCCCCcEEEEeeC-----CCeEEEecccccc--cCCc-eeeeeeccccceeEEEEcCCCCeEE
Q 015301 178 LRI--PAHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFI--SKGR-ANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 178 ~~~--~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
..+ ..|...+..+.|+ +++++|+..+. +..|.+||+.... ..+. ....+..+...+.. .|+|+|+.|+
T Consensus 224 ~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 301 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT 301 (710)
T ss_dssp EEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred EEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence 222 3355668899999 88888887664 5689999975100 0021 34455556655554 4888998877
Q ss_pred EEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 248 SNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 248 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+.. +.|.+||+.+... .....+..+.... .+..+.+++
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~----~~~~~~~~~ 345 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKD----VLEWVACVR 345 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSC----EEEEEEEET
T ss_pred EEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCC----eEEEEEEEc
Confidence 76653 3699999876321 0112222221110 122345666
Q ss_pred CCCEEEEEeCCCe--EEEEEccCCceEEEeccCCcceeeeEEecCcCeEE-e---ecCCCeEEEEecCCCc
Q 015301 324 AQKYIYTGSSDNS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI-S---SSWDCNIVRWEIPGIG 388 (409)
Q Consensus 324 ~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s---~~~dg~i~iw~~~~~~ 388 (409)
++.++++...++. |++|++.+++.+..+..+.+.+..+.++|+++.|+ + ....+.|+.||+.+++
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888888888884 66677767888888888888899999999987554 2 2346899999997765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=155.24 Aligned_cols=232 Identities=10% Similarity=0.027 Sum_probs=145.6
Q ss_pred ceeeEEecCceeEeeccc----eEEEEe-eecCCCceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSC----HVLSRY-LPVNGPWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~----~~~~~~-~~~~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
...++|||||++++.... ..++.+ ........+..+...+ ..+.|+|||++|+.++.++.|++|++.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~- 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV- 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE-
Confidence 456789999998665321 122222 1222233444444443 348899999999999999999999998874332
Q ss_pred eeecccccceEEE-------------------EEeCCCCcEEEEE-----ecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 78 DIETKALRWTITD-------------------TSLSPDQRFLVYA-----SICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 78 ~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
....... .... +.|+|+++.++.+ ..+..|.+||+.+++......
T Consensus 117 ~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--------- 185 (396)
T 3c5m_A 117 IYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--------- 185 (396)
T ss_dssp EEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------
T ss_pred EEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---------
Confidence 2221111 1111 3568888877654 356789999998776433221
Q ss_pred eecCCCCcceeeEEEEEcC-CCCeEEEEEec------CeEEEEECCCCeeeeEEcCC--CCCeEEEEEeCCCCcEEEEee
Q 015301 134 FSADGDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAH--KSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+...+..+.|+| +++.|+..+.+ ..|.+||+..++... +..+ ...+..++|+ |+++.|+.++
T Consensus 186 -------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~s-pdg~~l~~~~ 256 (396)
T 3c5m_A 186 -------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWI-PDGSAMAYVS 256 (396)
T ss_dssp -------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEEC-TTSSCEEEEE
T ss_pred -------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEEC-CCCCEEEEEe
Confidence 112478899999 78877776543 368899987665333 3223 2357889999 7888776665
Q ss_pred CC-----CeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEe----------------CCCcEEEeeCCC
Q 015301 205 DD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG----------------KDQTTKLWDIRK 262 (409)
Q Consensus 205 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~~~ 262 (409)
.+ +.|++||+. .+.... +.... ... +.|+| +|+++++++ .+..|.+||+.+
T Consensus 257 ~~~~~~~~~l~~~d~~----~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPE----TLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EETTTCCEEEEEECTT----TCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred cCCCCccceEEEEECC----CCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 43 459999974 333222 21111 223 88999 999888754 246899999876
Q ss_pred C
Q 015301 263 M 263 (409)
Q Consensus 263 ~ 263 (409)
.
T Consensus 330 ~ 330 (396)
T 3c5m_A 330 K 330 (396)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=140.80 Aligned_cols=256 Identities=11% Similarity=0.100 Sum_probs=172.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC------------------------CcEEEEEcCCCeeeeeeeecccccceEEEEEeC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE------------------------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLS 94 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 94 (409)
--+.+.+++++|+|+++++...+ ++|.+||..++...... . ..+-..+..++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~-~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-G-KNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-C-TTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-C-CCccCCceEEEEC
Confidence 34779999999999999888777 47999999877544322 1 2233468999999
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEE-ecCeEEEEECC
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAG-SDNFIYVYDLQ 172 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~v~d~~ 172 (409)
|+++++++...++.|++|+....... ........ .......+...+..++++| ++.++++.+ .++.|++|| .
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~-~~~~~~~~----~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGP-LLILGRSM----QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCC-SEEESBTT----BCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEE-EEEecccC----CCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 99998888888999999998654211 11110000 0000112333588999999 787777765 589999999 5
Q ss_pred CCeeeeEEcC----------CCCCeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEE
Q 015301 173 ANKCSLRIPA----------HKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDS 239 (409)
Q Consensus 173 ~~~~~~~~~~----------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~ 239 (409)
+++.+..+.. +-..+..++++ ++ +.++++...++.|++||.. .++.+..+. .+...+..+++
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceeee
Confidence 6777666632 22348999999 55 8888888889999999963 456655553 35567888999
Q ss_pred cC------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 240 RR------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 240 ~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+| +++.+++...+..|++||+.+.. .+..+.... ...
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~----------------------------------~~~~~~~~~---~~~ 291 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE----------------------------------IIDVFKPVR---KHF 291 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCC----------------------------------EEEEECCSS---SCC
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCe----------------------------------EEEEEcCCC---Ccc
Confidence 98 33333333345589999987632 222221100 001
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.....++++|+|.++++...+++|++|++..
T Consensus 292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2234667899998888888899999999854
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-16 Score=142.11 Aligned_cols=278 Identities=12% Similarity=0.008 Sum_probs=188.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC--CCccccccceec
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG--SSARESLANVTE 127 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~--~~~~~~~~~~~~ 127 (409)
|.+.++++...+++|.++|..+++.+..+. ... .+..+.|+||++++++++.++.|.+||+. +.+... .+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEec
Confidence 445567777788999999999986655433 222 46789999999999999999999999995 443321 1111
Q ss_pred eeeeeeeecCCCCcceeeEEEEEc----CCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-----------CCCeEEEE
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFS----TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVNTVC 191 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~ 191 (409)
......++|+ |+|+++++++. ++.|.++|..+.+.+..+... ...+..+.
T Consensus 239 --------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 239 --------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp --------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 1136789999 69999888876 589999999999988776421 12677888
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 270 (409)
.++....+++....+|.|.++|.... ....+..+ ........+.|+|++++++++. .++.|.++|+.+.+.
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~--~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl----- 376 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDL--NNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----- 376 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCS--SEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCC--ccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----
Confidence 88555667777778899999996421 11111122 2334566789999999887765 578999999987432
Q ss_pred ccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCC-EEEEEe-CCCeEEEEEccC---
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQK-YIYTGS-SDNSVYIYDLVS--- 344 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~v~i~d~~~--- 344 (409)
+..+.- ........... -++|++. ..+++. .++.|.++|..+
T Consensus 377 -----------------------------~~~i~vgg~~Phpg~g~~---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 377 -----------------------------VAIEDTGGQTPHPGRGAN---FVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp -----------------------------EEEEECSSSSBCCTTCEE---EEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred -----------------------------EEEEeccCcCCCCcccee---eECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 111111 00000000000 1456644 444443 468999999987
Q ss_pred ----CceEEEeccCCcceeeeEEecCcCeEEeecC-------CCeEEEEecCCC
Q 015301 345 ----GAQVAKLDFHNAPVRDCCWHPIYPMLISSSW-------DCNIVRWEIPGI 387 (409)
Q Consensus 345 ----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 387 (409)
.+.+.++......-..+..+|++++|..... .+.|.++|+.+.
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6778888765444455788999998877552 359999999876
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-18 Score=155.73 Aligned_cols=280 Identities=10% Similarity=0.002 Sum_probs=178.8
Q ss_pred CCCCCEEEEEeCCC---cEEEEE--cCCCeeeeeeeec----ccccceEEEEEeCCCCcEEEEE-----ecCCEEEEEEc
Q 015301 49 SNDGSFFVAASQES---NIKVYN--VDKNWKIQKDIET----KALRWTITDTSLSPDQRFLVYA-----SICAIVNIVDV 114 (409)
Q Consensus 49 s~~~~~l~t~~~d~---~i~vw~--~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~~w~~ 114 (409)
+|+|++++....++ .-.+|. ...+. ...++.. .+|...+..++|||||++||.+ +.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 47899888766543 344454 43432 2222221 2345579999999999999954 33468999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe-------------EEEEECCCCee----e
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF-------------IYVYDLQANKC----S 177 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~v~d~~~~~~----~ 177 (409)
.+++......... .....++|+|||+.|+.++.+.. |++|++.+++. +
T Consensus 155 ~tg~~~~~~~~~~---------------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 155 DSGEWSKVDVIEG---------------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp TTCCBCSSCCBSC---------------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred CCCCCcCCcccCc---------------ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 9887531111100 01257899999999999988765 99999988762 2
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCC----eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--- 250 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 250 (409)
.....|...+..+.|+ +++++|+..+.++ .|.+|+.. .+ ....+..+...+....+ ++|.+++...
T Consensus 220 ~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp ECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred EecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCC
Confidence 2333455678999999 8888888777665 56666632 22 34445555556666666 5666444433
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.++.|.+||+.+.... ....+..+... ..+..++++ ++.++++
T Consensus 293 ~~~~l~~~d~~~~~~~--------------------------------~~~~l~~~~~~----~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARA--------------------------------SWKEIVPEDSS----ASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp TTCEEEEEBTTBCSGG--------------------------------GCEEEECCCSS----CEEEEEEEE-TTEEEEE
T ss_pred CCCEEEEEeCCCCCcc--------------------------------CCeEEecCCCC----CeEEEEEEE-CCEEEEE
Confidence 2578999998763210 01111111100 111233455 5788889
Q ss_pred EeCCCeEEEEEcc-CCceEEEeccC-CcceeeeEEecCcCeEE----eecCCCeEEEEecCCCc
Q 015301 331 GSSDNSVYIYDLV-SGAQVAKLDFH-NAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 331 ~~~dg~v~i~d~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~ 388 (409)
...|+..+||.+. +++....+..+ .+.|..++++|+++.|+ +....+.|++||+.+++
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999988888765 46666667655 66788899999998666 33446889999998754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=153.70 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=163.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE----
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---- 108 (409)
+|...+..++|||||++||.++.++ .|++||+.+++........ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence 3445689999999999998776543 8999999998655432211 12567899999999999887765
Q ss_pred ------------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEEC
Q 015301 109 ------------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDL 171 (409)
Q Consensus 109 ------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~ 171 (409)
|++|++.++.......... ..+...+..+.|+|||++|+.++. +..|++||+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence 9999998765321111110 112224778999999999988876 568999999
Q ss_pred CC------Ce-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCc--eeeeeecccc--ceeE
Q 015301 172 QA------NK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGR--ANGVLMGHLE--GITF 236 (409)
Q Consensus 172 ~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~--~v~~ 236 (409)
.+ +. ....+..+...+.. .|+ ++++.|+..+.. +.|.+||+. .+. ....+..|.. .+..
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~ 340 (710)
T 2xdw_A 267 QQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLEW 340 (710)
T ss_dssp GGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEEE
T ss_pred cccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEEE
Confidence 86 43 34556556666555 477 566666655442 369999975 222 2234444543 6788
Q ss_pred EEEcCCCCeEEEEeCCCc--EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 237 IDSRRDGRYFISNGKDQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
+.|++++.++++...|+. |.+||+.++ ..+..+..+. .
T Consensus 341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~------~ 380 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEV------G 380 (710)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCS------S
T ss_pred EEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCC------c
Confidence 899877778888888885 555665441 2222233221 1
Q ss_pred EEEeeeecCCCCEEEEEe----CCCeEEEEEccCCc
Q 015301 315 CYFSPEYSTAQKYIYTGS----SDNSVYIYDLVSGA 346 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~----~dg~v~i~d~~~~~ 346 (409)
.+..+.++|+++.++... ..+.|++||+.+++
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 233446778887665432 24789999998877
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-15 Score=126.15 Aligned_cols=283 Identities=10% Similarity=0.058 Sum_probs=189.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
..+...+.+++++++|+++++...++.|.+||.. +. ..... .......+.++++++++..+++...++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 3455789999999999988877667899999988 42 22221 12223478999999999988877778899999875
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~ 195 (409)
++.... ... .....+..+++.+++.++++...++.|..||. +++.... ...+...+..+++. +
T Consensus 87 g~~~~~-~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~ 150 (299)
T 2z2n_A 87 GIIKEY-TLP-------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-S 150 (299)
T ss_dssp SCEEEE-ECS-------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-T
T ss_pred CcEEEE-eCC-------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-C
Confidence 221110 000 01225889999999987776666789999998 5554332 23345678999998 7
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
+++++++...++.|..||. .+..... .......+..++++++++++++...++.|.+||. +..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------- 214 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-----SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------- 214 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----------
T ss_pred CCCEEEEeCCCCEEEEEcC-----CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----------
Confidence 8888887777889999995 2222221 2233456789999999987777666888999997 421
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE-ecc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDF 353 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~ 353 (409)
+..+..... ......++++++|+++++...++.|..||. +++.... +..
T Consensus 215 -------------------------~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 264 (299)
T 2z2n_A 215 -------------------------ITEFKIPTP----NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQI 264 (299)
T ss_dssp -------------------------EEEEECSST----TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred -------------------------EEEEECCCC----CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCC
Confidence 111100000 012345577888987777667889999998 4543222 334
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+...+.++++ +++.++++.. .+.|..++..+.
T Consensus 265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 4567899999 8888777655 567777776553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-17 Score=137.57 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=155.6
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|++++..++... ....+ .......+.++...+.+++|+|+|++++++..++.|.+||.+++..... ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-FV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-ee
Confidence 35688888876544321 11122 2233345667778889999999999888888889999999987743322 21
Q ss_pred cccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.+...+.+++++|+++++++...+ +.|.+||..++......... .+...+..++++|+|+.
T Consensus 84 --~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 84 --SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------STAYCIDDMVFDSKGGF 148 (333)
T ss_dssp --CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-------------SSCCCEEEEEECTTSCE
T ss_pred --CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-------------ccCCcccceEECCCCCE
Confidence 123479999999999988877666 68999998876543111100 01225889999999987
Q ss_pred EEEEEe------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceee----
Q 015301 157 LVAAGS------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANG---- 225 (409)
Q Consensus 157 l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~---- 225 (409)
+++... .+.|..+|..+++... +..+...+..++|+ ++++.| ++.+.++.|.+||++. .+....
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~---~g~~~~~~~~ 223 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALS-TDEKVLWVTETTANRLHRIALED---DGVTIQPFGA 223 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSSSEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecC---CCcCcccccc
Confidence 766543 3567777766555433 22233457899999 777755 5555678999999741 111111
Q ss_pred ----eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 226 ----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 226 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+.++ ..+..++++++|+++++...++.|.+||..
T Consensus 224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 11111 367889999999988877778899999974
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-17 Score=152.53 Aligned_cols=250 Identities=12% Similarity=0.035 Sum_probs=160.7
Q ss_pred cCCCCeEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE----
Q 015301 38 GMNSRVYTSQFSNDGSFFV-----AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---- 108 (409)
+|...+..++|||||++|| .|+.+..|++||+++++..... ..... ....++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 4666799999999999998 3444578999999998543110 11111 1157899999999999988765
Q ss_pred ---------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC----eEEEEECCCCe
Q 015301 109 ---------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----FIYVYDLQANK 175 (409)
Q Consensus 109 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~ 175 (409)
|++|++.++......... ...+...+..+.|+|+|++|+.++.++ .|++++..+++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~-----------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHE-----------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEEC-----------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEe-----------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 999999887643111111 012223578899999999999888776 78888776665
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCce--eeeeecc--ccceeEEEEcCCCCeEEE
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRA--NGVLMGH--LEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~ 248 (409)
. ..+..+...+....+. . +.+++... .++.|.+||+. .+.. ...+..+ ...+..++++ ++.++++
T Consensus 264 ~-~~l~~~~~~~~~~~~~-~-g~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHAW-K-DRFYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp C-EEEEECSSCCEEEEEE-T-TEEEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred e-EEeecCCCceEEEEec-C-CcEEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 4 3444455566666664 4 44555544 25789999975 2221 2233333 4457888888 6778888
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
...|+..++|.+... +.....+..+. ...+..+.++|+++.+
T Consensus 336 ~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~-----~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 336 YLKDATSEVRVATLK---------------------------------GKPVRTVQLPG-----VGAASNLMGLEDLDDA 377 (695)
T ss_dssp EEETTEEEEEEEETT---------------------------------CCEEEECCCSS-----SSEECCCBSCTTCSEE
T ss_pred EEECCEEEEEEEeCC---------------------------------CCeeEEecCCC-----CeEEEEeecCCCCCEE
Confidence 888998888865420 11111111110 0123345677888777
Q ss_pred EEEe----CCCeEEEEEccCCce
Q 015301 329 YTGS----SDNSVYIYDLVSGAQ 347 (409)
Q Consensus 329 ~~~~----~dg~v~i~d~~~~~~ 347 (409)
+... ..+.|++||+.+++.
T Consensus 378 ~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 378 YYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEcCCCCCCEEEEEECCCCcE
Confidence 6333 347899999988774
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-16 Score=134.08 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=123.6
Q ss_pred CCeEEEEECCCCCEEEEEeCC---C--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---------
Q 015301 41 SRVYTSQFSNDGSFFVAASQE---S--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------- 106 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 106 (409)
..+..++|||||++||.++.+ + .|.+|++.+++... .... .. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEE---SE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 568899999999999987754 3 37888888774332 2221 22 8899999999999988743
Q ss_pred ------------------CEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---
Q 015301 107 ------------------AIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--- 164 (409)
Q Consensus 107 ------------------g~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 164 (409)
..|.+||+.+++. ..... . .+..++|+|+| .++++..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----------------~~~~~~~spdg-~~~~~~~~~~~~ 194 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----------------RFSSGIWHRDK-IVVNVPHREIIP 194 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----------------TTCEEEEETTE-EEEEEECCCSSC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-----------------CcccccCCCCe-EEEEEecccccc
Confidence 5788999987754 21111 0 26788999999 777665432
Q ss_pred ------eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeecc
Q 015301 165 ------FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 165 ------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
.|.++| +++.. .+..+ ..+..+ + |+++.|+.++.+ ..|.+|| .+........+
T Consensus 195 ~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d------~~~~~~l~~~~ 261 (347)
T 2gop_A 195 QYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD------GKEVMGILDEV 261 (347)
T ss_dssp CSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC------SSCEEESSTTC
T ss_pred cccccccEEEeC--CCceE-EeccC-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC------CCceEeccccC
Confidence 455555 55543 34334 455544 7 788888776644 3677777 23333334455
Q ss_pred ccceeE-EEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 231 LEGITF-IDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 231 ~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
...+.. +.|+ ++ ++++++.++.+++| +.+
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 667776 8999 88 88899999999999 863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-16 Score=130.49 Aligned_cols=247 Identities=9% Similarity=0.066 Sum_probs=166.6
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+..+.....+++|+|+|+ +++++..++.|..|+.+++ ..... .+...+.+++++|+++++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 45566677789999999998 7788888899999999876 22222 233468999999999988877777899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE----E-------------ecCeEEEEECCCCe
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA----G-------------SDNFIYVYDLQANK 175 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~-------------~d~~i~v~d~~~~~ 175 (409)
|..+++.......... .....+..++++|+|+++++. + ..+.|..++.. ++
T Consensus 96 d~~~g~~~~~~~~~~~-----------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 96 REPGGEWESIADSFEG-----------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp CSTTCCEEEEECEETT-----------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred cCCCCcEEEEeeccCC-----------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 9977764322211100 001136789999999977763 2 12466666655 44
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce---eeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
...+..+...+..++|+ ++++.+++.+.++.|.+||+. ..+.. ...+..+...+..++++++|+++++. +
T Consensus 164 -~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~---~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 164 -LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLN---ARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp -EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEEC---SSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred -EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEEC---CCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 33445566778999999 788888777788999999974 12222 12222345566789999999866655 7
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee-cCCCCEEEEE
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTG 331 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~ 331 (409)
+.|.+||... +.+..+..+.. ..+++| +|+++.|+++
T Consensus 237 ~~v~~~~~~g-----------------------------------~~~~~~~~~~~-------~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 237 DGVHVLTPDG-----------------------------------DELGRVLTPQT-------TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp TEEEEECTTS-----------------------------------CEEEEEECSSC-------CCEEEEESTTSCEEEEE
T ss_pred CeEEEECCCC-----------------------------------CEEEEEECCCC-------ceeEEEECCCCCEEEEE
Confidence 8899999753 22333333321 223456 5788989888
Q ss_pred eCCCeEEEEEccCCce
Q 015301 332 SSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~ 347 (409)
+.++ +.-++..+.+.
T Consensus 275 t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 275 VSTE-FWSIETNVRGL 289 (296)
T ss_dssp ETTE-EEEEECSCCBC
T ss_pred cCCe-EEEEEcccccc
Confidence 8764 55556655543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-16 Score=129.33 Aligned_cols=242 Identities=7% Similarity=-0.018 Sum_probs=162.9
Q ss_pred eEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+.+++++++++.++ +...++.|.+|+..+........ .....+.+++++++++.+++.. ++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~~p~~i~~~~~g~l~v~~~-~~~ 88 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF---------------NGLYQPQGLAVDGAGTVYVTDF-NNR 88 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC---------------CSCCSCCCEEECTTCCEEEEET-TTE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee---------------CCcCCcceeEECCCCCEEEEcC-CCE
Confidence 578899999998776 44678899999876543221110 0112477899999998555544 889
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
|.+||................+..+++. ++++++++...++.|.+|+.. ..............+..+++++++++
T Consensus 89 i~~~d~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 89 VVTLAAGSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp EEEECTTCSCCEECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred EEEEeCCCceEeeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCCCE
Confidence 9999987654332222233678999999 788888877778899999843 22222222223346788999999997
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
+++...++.|.+||....... ....... .....++++++|
T Consensus 164 ~v~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~------~~p~~i~~d~~g 203 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAESNNQV----------------------------------VLPFTDI------TAPWGIAVDEAG 203 (270)
T ss_dssp EEEEGGGTEEEEECTTTCCEE----------------------------------ECCCSSC------CSEEEEEECTTC
T ss_pred EEEECCCCEEEEEecCCCceE----------------------------------eecccCC------CCceEEEECCCC
Confidence 777777889999997652110 0000000 112345788889
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.++++...++.|.+|+............+...+.+++++++++++++...++.|+++++...+.
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 8777777789999999876554333223345789999999999888888899999999876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-15 Score=125.54 Aligned_cols=288 Identities=10% Similarity=-0.039 Sum_probs=183.1
Q ss_pred EECCCCCEEEEEeC--CC---cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEE
Q 015301 47 QFSNDGSFFVAASQ--ES---NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNI 111 (409)
Q Consensus 47 ~~s~~~~~l~t~~~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~ 111 (409)
...|+++++.+... .. +|.+||..+++.+.... ... .. .++++||+++|+++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~-~g~---~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGF---LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec-CCC---CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 44578887777653 22 78999999886554322 221 23 899999999999886 3678999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeE-EcCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~ 188 (409)
||..+.+............ + ........++|+|+|++|++++. ++.|.++| .+++.+.. +... .
T Consensus 102 iD~~t~~~~~~i~~~~~~~---~-----~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~--- 168 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPR---F-----DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T--- 168 (373)
T ss_pred EECCCCcEEEEEECCCccc---c-----ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---
Confidence 9998765433222110000 0 00012457999999999999874 47899999 99998877 6532 2
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----ccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
++.+.|.....+++.+.||.+.++|. .++...... ....++ ....+.+++..++..+.++.+.+.|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-----~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-----AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-----CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 24455455567777888999999995 222221111 111121 2344566665555555778899999865
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC-----
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS----- 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~----- 333 (409)
..... +..+.... ...........+.++|+++.++++..
T Consensus 244 ~~~~v--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 244 AGATN--------------------------------KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred CcceE--------------------------------eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 22110 00000000 00000001122457888888887653
Q ss_pred -----CCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 334 -----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 -----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
++.|.++|..+++.+.++.. ......++|+||++ .++++. .++.|.++|+.+.+..
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 35799999999999999863 44689999999999 788877 5899999999887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-14 Score=128.23 Aligned_cols=302 Identities=10% Similarity=0.065 Sum_probs=191.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeeeeeecccccceEEEEEeC----CCCcEEEEEe-cCCEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVD--KNWKIQKDIETKALRWTITDTSLS----PDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~-~dg~i~~w 112 (409)
...+..+.|||||+++++++.|+.|.+||+. +.+.+.... ... ....++|+ |||++++++. .++.+.++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-IGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-CCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-cCC---CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3467799999999999999999999999995 554444332 222 46889999 6999988776 45899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCc-ceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeee--eEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCS--LRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~--~~~~~~~~~v~ 188 (409)
|..+.+........... ... ...| ...+..+..++++..+++. ..+|.|.++|....+.+ ..+. ......
T Consensus 272 D~~t~~~~~~i~~~~~~----~~~-~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~ 345 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMT----YDE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLH 345 (567)
T ss_dssp ETTTCCEEEEEECCEEC----TTT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEE
T ss_pred ECCCCcEEEEEeccccc----ccc-ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-cccccc
Confidence 98877654332221100 000 0001 1147788888887665544 44699999998775432 2232 345577
Q ss_pred EEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeE-EEEe-CCCcEEEeeC
Q 015301 189 TVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYF-ISNG-KDQTTKLWDI 260 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~-~dg~i~iwd~ 260 (409)
++.|+ +++++++++. .++.|.++|+. +++....+.. |.+.-..+ ++|++..+ +++. .++.|.++|.
T Consensus 346 d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 346 DGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 88999 7888776655 67899999975 4444443332 33211122 57875544 4443 4689999998
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-------
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------- 333 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------- 333 (409)
........ ..+.+..+...... ...+..+|++++|.+...
T Consensus 420 ~~~~~~~~---------------------------~~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 420 DPEGHPDN---------------------------AWKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp CTTTCTTT---------------------------BTSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHHH
T ss_pred CCCCCccc---------------------------cCEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCccc
Confidence 76211100 01223333322110 112346889999988763
Q ss_pred CCeEEEEEccCC-----c-eEEEec--------cCCcceeeeEEecCcCeEEeec-----CCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSG-----A-QVAKLD--------FHNAPVRDCCWHPIYPMLISSS-----WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~-----~-~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~ 390 (409)
..+|.++|+.+. . ....+. .....+..+.|+|+|+.+..+. .++.|.++|..+.+..
T Consensus 467 ~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 467 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 358999999877 2 123332 1245789999999999665542 3799999999887654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-14 Score=118.88 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=186.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
....+.+++++++|+++++...++.|.+|+.. +.. ... ........+.++++.++++.+++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-KEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-EEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 45678999999999988877778899999987 422 221 122223468999999999888877668899999987 43
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETG 197 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 197 (409)
.... ... .....+..+++.++++++++...++.|..+|.. ++... .+......+..+++. +++
T Consensus 94 ~~~~-~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g 157 (300)
T 2qc5_A 94 FTEY-PLP-------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN 157 (300)
T ss_dssp EEEE-ECS-------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred eEEe-cCC-------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence 3211 100 011258899999999877766557899999987 55442 233345678999998 788
Q ss_pred cEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+++++...++.|..+|.. +.... ....+...+..+++++++.++++....+.|.+||... .
T Consensus 158 ~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~------------ 219 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E------------ 219 (300)
T ss_dssp SEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C------------
T ss_pred CEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c------------
Confidence 877776667889999852 22222 1223345688999999998777666677899998732 1
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-EEeccCC
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-AKLDFHN 355 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~ 355 (409)
...+..... ......++++++|++.++...++.|..||. +++.. ..+....
T Consensus 220 -----------------------~~~~~~~~~----~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 271 (300)
T 2qc5_A 220 -----------------------ISEYDIPTP----NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTEN 271 (300)
T ss_dssp -----------------------EEEEECSST----TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTT
T ss_pred -----------------------EEEEECCCC----CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccC
Confidence 000100000 012235567888887777767789999998 45433 2233345
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..+.+++++++|+++++.. . .|..++..
T Consensus 272 ~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 272 AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 6789999999998666655 4 77777653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-16 Score=127.19 Aligned_cols=242 Identities=8% Similarity=0.021 Sum_probs=162.0
Q ss_pred CeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
...+++++++|++++ +...++.|.+|+..+...... . ......+.+++++++++.+++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC--C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE--e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 788999999999777 546788999999765432211 1 11223578899999998666655 889999998765432
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.... .....+..++++++|+.+++...++.|.+|+..+.............+.++++. ++++++
T Consensus 101 ~~~~---------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~ 164 (270)
T 1rwi_B 101 VLPF---------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVY 164 (270)
T ss_dssp ECCC---------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCEE
T ss_pred eeec---------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCEE
Confidence 1110 001247899999999877766668899999876554333222333467889999 788877
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 165 v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--------------- 225 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--------------- 225 (270)
T ss_dssp EEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------------
T ss_pred EEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------------
Confidence 777778899999964 2222222223336688999999998777777788999999765211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
...... . ......++++++|+++++...++.|++|++...+.
T Consensus 226 --------------------~~~~~~-~----~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 --------------------TVLPFT-G----LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp --------------------EECCCC-S----CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred --------------------eeeccC-C----CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 000000 0 01234557888999888888999999999876654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-16 Score=127.37 Aligned_cols=232 Identities=10% Similarity=-0.010 Sum_probs=156.0
Q ss_pred ceeeEEecCce-eEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGR-FSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~-~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.+.++|+|+|+ .+.+ .....+..+-+......+..+...+.+++++|+|+++++...++.|.+||..++.........
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 56799999997 3333 333344555444444566678888999999999998888777789999999776432221111
Q ss_pred c-cccceEEEEEeCCCCcEEEEE----ec-------------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 82 K-ALRWTITDTSLSPDQRFLVYA----SI-------------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 82 ~-~~~~~v~~~~~s~~~~~l~~~----~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
. .....+..++++|+|+++++. +. .+.|..++.. ++..... .+..
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----------------~~~~ 172 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI----------------RDRV 172 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE----------------CCCS
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee----------------cCCC
Confidence 1 111246789999999988873 21 2455555544 2221110 0111
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECC-CCee---eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKC---SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 219 (409)
....++|+|+++.+++.+.++.|.+|++. +++. ...+..+...+..+++. ++++++++. ++.|.+||.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~----- 244 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTP----- 244 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECT-----
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECC-----
Confidence 46789999999988666667899999986 4544 23333455667889999 788876665 788999995
Q ss_pred CCceeeeeeccccceeEEEE-cCCCCeEEEEeCCCcEEEeeCCC
Q 015301 220 KGRANGVLMGHLEGITFIDS-RRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.++....+..+.. +.+++| .|+++.|++++.++ +..++.++
T Consensus 245 ~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 3566666666666 899999 68888888888764 55555554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-15 Score=125.67 Aligned_cols=293 Identities=12% Similarity=0.014 Sum_probs=186.4
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEE
Q 015301 46 SQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVN 110 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 110 (409)
....|+++.+++... ++.|.+.|..+.+.+........ + . ++++||+++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 455799998888765 57999999999876655543322 3 4 99999999988775 367899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
+||..+.+............ .........++|+|||++++++.. ++.|.++|+.+++.+.++....
T Consensus 113 viD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---- 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---- 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----
T ss_pred EEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----
Confidence 99999887544332211000 000012556899999999998874 6899999999999998885422
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc----cccee-EEEE-cCCCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGIT-FIDS-RRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~-~~~~-~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+....|.....+++.+.||.+.+.++.. .++.......+ ..++. ...| .++|++++ .+.+|.+.+.|+..
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGT---EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS 256 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCS---SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT
T ss_pred cceeecCCCceeEEECCCCCEEEEECCC---CCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC
Confidence 1222345667777888899998888641 12221111111 12221 2345 36776544 55689999999876
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC--------
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-------- 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-------- 333 (409)
...... ..+..+..... ...........+++++++.++....
T Consensus 257 ~~~~v~-----------------------------~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 257 GDAKFL-----------------------------PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp SSCEEC-----------------------------CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred Ccceee-----------------------------cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 321100 00000000000 0000000012346778888877653
Q ss_pred --CCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEee-cCCCeEEEEecCCCcc
Q 015301 334 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISS-SWDCNIVRWEIPGIGE 389 (409)
Q Consensus 334 --dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~ 389 (409)
.+.|.++|+.+++.+.++.. ...+..|++++|++ +|+++ ..++.|.++|..+++.
T Consensus 308 ~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp SCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 25799999999999999874 34788999999997 66664 5689999999987654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-16 Score=143.50 Aligned_cols=279 Identities=10% Similarity=0.027 Sum_probs=174.8
Q ss_pred CCCCCEEEEEeCCCc---EEEEEcCC----Ceeeeeeee----cccccceEEEEEeCCCCcEEEEEecC-----CEEEEE
Q 015301 49 SNDGSFFVAASQESN---IKVYNVDK----NWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASIC-----AIVNIV 112 (409)
Q Consensus 49 s~~~~~l~t~~~d~~---i~vw~~~~----~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w 112 (409)
+|+|++++....++. -.+|..+. +.....++. ..++...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887654432 45555432 212222211 12233468899999999999987654 469999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe--------------EEEEECCCCee--
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF--------------IYVYDLQANKC-- 176 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~v~d~~~~~~-- 176 (409)
|+.+++.... .. .. ..+..++|+|| +.|+.+..++. |++|++.++..
T Consensus 195 dl~tg~~~~~-~~----~~-----------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 195 GVADGKPLAD-EL----KW-----------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp ETTTCCEEEE-EE----EE-----------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred ECCCCCCCCc-cC----CC-----------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 9998875321 00 00 01357899999 98988876543 89999987652
Q ss_pred eeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCC--ceeeeeeccccceeEEEEcCCCCeEE
Q 015301 177 SLRI--PAHKSDVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKG--RANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 177 ~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
...+ ..+...+..+.|+ +++++|+..+.++ .|.+||+. .+ .....+..+...+.... +|+|+.|+
T Consensus 258 ~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~ 331 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQLW 331 (741)
T ss_dssp EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTEEE
T ss_pred EEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCEEE
Confidence 2223 2333458899999 8998888777544 89999975 32 21344444555555443 48898888
Q ss_pred EEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 248 SNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 248 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+.+ +.|.+||+.+.. . .....+..+.. .+..+.++
T Consensus 332 ~~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~------~l~~~~~~- 372 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKD------NLESVGIA- 372 (741)
T ss_dssp EEECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSS------EEEEEEEE-
T ss_pred EEECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCC------eEEEEEEE-
Confidence 77653 459999986521 0 00111111111 11122344
Q ss_pred CCCEEEEEeCCCeEEEEEcc-CCceEEEeccC-CcceeeeEEecCcCeEE----eecCCCeEEEEecCCCcc
Q 015301 324 AQKYIYTGSSDNSVYIYDLV-SGAQVAKLDFH-NAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~ 389 (409)
++.++++...|+..+||.+. +++....+..+ .+.+..+.++|+++.|+ +....+.|++||+.+++.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 46788888889887777654 46666666643 66789999999988555 334568999999977543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-15 Score=127.69 Aligned_cols=260 Identities=7% Similarity=-0.009 Sum_probs=172.4
Q ss_pred CCCcEEEEEcCCCeeeeeeee---cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 60 QESNIKVYNVDKNWKIQKDIE---TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
.+++|.+||.++++....... .......+..+.+. +++.+++...++.|.+||..+++.......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----------- 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----------- 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----------
Confidence 378999999998854432211 11122346777774 455566666789999999998876433211
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEeCCCCcEEEEee-CCCeE
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFADETGHLIFSGS-DDSLC 209 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i 209 (409)
......++++++++ ++++. .++.|.+||..+++....+.... .....+++. ++.++++.. .++.|
T Consensus 83 -----~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 83 -----FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRI 154 (328)
T ss_dssp -----CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEE
T ss_pred -----CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEE
Confidence 11478899989885 55554 78999999999998887765433 145677773 444454443 48899
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC----------CcEEEeeCCCCcccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD----------QTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.++|+. +.+....+.. ......+.++|+|++++++..+ +.|.++|..+.+
T Consensus 155 ~viD~~----t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------------- 214 (328)
T 3dsm_A 155 LKIDTE----TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------------- 214 (328)
T ss_dssp EEEETT----TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------------
T ss_pred EEEECC----CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------------
Confidence 999965 5555555543 2345678899999977776655 789999987632
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE--eccCCcc
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK--LDFHNAP 357 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~~~~~ 357 (409)
....+..... .....++++|+++.|+++.. .|.+||..+++.... +..+...
T Consensus 215 -------------------v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 215 -------------------VEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp -------------------EEEEEECCTT-----CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred -------------------EEEEEecCCC-----CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 1112211000 11245678999999988765 899999988876421 2222456
Q ss_pred eeeeEEecC-cCeEEee----cCCCeEEEEecC
Q 015301 358 VRDCCWHPI-YPMLISS----SWDCNIVRWEIP 385 (409)
Q Consensus 358 v~~~~~s~~-~~~l~s~----~~dg~i~iw~~~ 385 (409)
...++++|+ +.++++. ..++.|.+||..
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 889999994 5555555 568999999987
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=121.97 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=138.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
.+++|++++.|+.|++||.++++.+.+...... ..+.++.++|+|++|+ +.++.|..||. +++........
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC----
Confidence 467899999999999999989977665443221 2578889999999888 34778999998 56543332221
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEe
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~ 203 (409)
....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++. ++++++++.
T Consensus 75 ----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~ 142 (276)
T 3no2_A 75 ----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPL 142 (276)
T ss_dssp ----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEE
T ss_pred ----------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEEe
Confidence 1124788999999999998877 778888885 6777666531 11234456677 789999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..++.|..||. .++.+..+... ..+.++...++++.++++..++.|..+|..++
T Consensus 143 ~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 143 FATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp TTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred cCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 99999999994 36777666554 44567788899999999888889999998863
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-15 Score=122.46 Aligned_cols=213 Identities=13% Similarity=0.055 Sum_probs=157.3
Q ss_pred CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
.++.|++++.++.|.+||.++++......... ...+.++.++|+|++++ +.++.|..||. +++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--------------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--------------GWECNSVAATKAGEILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--------------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--------------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC
Confidence 46789999999999999998887654433211 01478899999999887 45788999999 899
Q ss_pred eeeEEcCC-CCCeEEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeee------ccccceeEEEEcCCCCeEE
Q 015301 176 CSLRIPAH-KSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLM------GHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 176 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~ 247 (409)
.+..+..+ ...+.++.+. ++++++++.+. ++.+..+|. .++.+..+. .+......+.+.++|++++
T Consensus 67 ~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV 140 (276)
T ss_dssp EEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred EEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence 99888764 3578888998 89999998887 777877774 444444432 2223455677899999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+...++.|..||.. ++ .+..+..... .++....++|++
T Consensus 141 ~~~~~~~v~~~d~~-G~----------------------------------~~w~~~~~~~-------~~~~~~~~~g~~ 178 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQ----------------------------------LLNSVKLSGT-------PFSSAFLDNGDC 178 (276)
T ss_dssp EETTTTEEEEECTT-SC----------------------------------EEEEEECSSC-------CCEEEECTTSCE
T ss_pred EecCCCEEEEECCC-CC----------------------------------EEEEEECCCC-------ccceeEcCCCCE
Confidence 99999999999976 32 2333332211 122345678999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCC------cceeeeEEecCcCeEEee
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHN------APVRDCCWHPIYPMLISS 373 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~ 373 (409)
++++..+++|..+|..+++.+.++..+. ..+..++..++|.++++.
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999989999999999999998886432 236788888999877776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=141.59 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=131.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE-----
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI----- 108 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----- 108 (409)
|...+..++|||||++||.++.+ ..|++||+++++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44478899999999999877653 469999999986543211 1112357899999 99998876543
Q ss_pred ---------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCC
Q 015301 109 ---------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQAN 174 (409)
Q Consensus 109 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~ 174 (409)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.++
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 8899987765321111100 11222478899999999998887654 8999999877
Q ss_pred --eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 175 --KCSLRIPAHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 175 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+....+..+...+.... . ++++.|+..+. ++.|.+||+.... ......+..+...+..+.++ ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-D-GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-E-EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCceEEEE-e-ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 31344544555555553 4 56777766664 3459999964210 22333334444556677777 5667788
Q ss_pred EeCCCcEEEeeCC
Q 015301 249 NGKDQTTKLWDIR 261 (409)
Q Consensus 249 ~~~dg~i~iwd~~ 261 (409)
...|+..++|.+.
T Consensus 380 ~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 380 YIHDAKSQVLAFD 392 (741)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 8889887777654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-13 Score=114.81 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=158.9
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCceee--cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+++++++++|.+..+.. ...+..+-+......+. .+...+.+++++++|.++++...++.|..|+.+.. ... .
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~-~ 92 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKE-Y 92 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEE-E
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEE-E
Confidence 467899999998666543 33344443332222222 34578999999999998888777888999998632 222 1
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
........+..+++.++++++++...++.|..||. +++...... . .....+..+++.++|+.+++
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~-------------~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-P-------------NKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-S-------------STTCCEEEEEECTTSCEEEE
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-C-------------CCCCCCceEEEcCCCCEEEE
Confidence 12222346899999999988887777889999998 443221110 0 11225789999999987766
Q ss_pred EEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 237 (409)
...++.|..||. +++.... +..+...+..+++. ++++++++...++.|..||. .+.... ....+...+.++
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-----SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-----CCcEEEEECCCCCCCceeE
Confidence 656789999998 6665432 33445678899998 77887777767889999995 222211 122344678899
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+++++|+++++...++.|..||..
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEeccCCceEEEECCC
Confidence 999999877666577889999973
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-14 Score=119.03 Aligned_cols=258 Identities=8% Similarity=-0.004 Sum_probs=167.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
.....+++. +++++++...++.|.+||..+++.+.... . ...+..++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~---~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-G---FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-C---CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-C---CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 446778875 35555666667999999999986655542 1 235889999998854444447899999999887654
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
....... ..+.......+++ . +..++++. .++.|.++|.++++.+..+... .....++++ ++++
T Consensus 119 ~~i~~g~----------~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~-~dG~ 184 (328)
T 3dsm_A 119 GYIECPD----------MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMD-KYNK 184 (328)
T ss_dssp EEEECTT----------CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEEC-TTSE
T ss_pred EEEEcCC----------ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEc-CCCC
Confidence 3222111 0000112445666 3 44555554 3789999999999988877643 345788898 7888
Q ss_pred EEEEeeCC----------CeEEEecccccccCCceeeeeecc-ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 199 LIFSGSDD----------SLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 199 ~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+++++..+ +.|.++|.. ..+....+... ......++++|+++.|+++.. .|.+||..+.....
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred EEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 77776654 789999964 45554444322 236789999999998888765 89999987633210
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEE----eCCCeEEEEEc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTG----SSDNSVYIYDL 342 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~----~~dg~v~i~d~ 342 (409)
. ..+... ......++++| ++.++++. ..++.|.+||.
T Consensus 259 ~--------------------------------~~~~~~------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 259 R--------------------------------PFLEFR------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp S--------------------------------CSBCCC------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred e--------------------------------eeecCC------CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 0 000000 01234557888 55555665 57899999999
Q ss_pred cCCceEEEeccCCcceeeeEE
Q 015301 343 VSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~ 363 (409)
. ++.+.++.. ...-..++|
T Consensus 301 ~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 301 Q-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp T-CCEEEEEEE-EESEEEEEE
T ss_pred C-CCEEEEEEe-ccCcceEEE
Confidence 7 988888763 223344444
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-14 Score=120.22 Aligned_cols=248 Identities=8% Similarity=0.064 Sum_probs=162.2
Q ss_pred eEEEEEeCCCCcEEEE-------EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEE
Q 015301 87 TITDTSLSPDQRFLVY-------ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELV 158 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 158 (409)
.+.+++|++++..+++ ...++.|.+||..+++...... . ...++...+..++++++ +++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~----------~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P----------EVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C----------EETTEECCEEEEEECSSSSEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c----------ccCCCCCCCceEEEecCCCcEEE
Confidence 4678999999988877 5778999999987766432211 0 00012235889999999 66444
Q ss_pred EEEecCeEEEEECCCCeeeeE-EcC----CCCCeEEEEEeCCCCcEEEEeeCC---------------CeEEEecccccc
Q 015301 159 AAGSDNFIYVYDLQANKCSLR-IPA----HKSDVNTVCFADETGHLIFSGSDD---------------SLCKVWDRRCFI 218 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~ 218 (409)
++....|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||.
T Consensus 88 -~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 160 (314)
T 1pjx_A 88 -ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT---- 160 (314)
T ss_dssp -EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT----
T ss_pred -EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECC----
Confidence 4445579999988 665432 211 12357899999 788887776654 56777773
Q ss_pred cCCceeeeeeccccceeEEEEc----CCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 219 SKGRANGVLMGHLEGITFIDSR----RDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+.. ..+..+......++++ |+++.++.+ ..++.|.+||+........
T Consensus 161 -~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------- 213 (314)
T 1pjx_A 161 -DGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------- 213 (314)
T ss_dssp -TSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-------------------------
T ss_pred -CCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-------------------------
Confidence 2222 2233344556889999 999765554 5678999999752100000
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 372 (409)
......+..+.. .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++++ ++++
T Consensus 214 ---~~~~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 214 ---KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp ---EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred ---ceEEEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence 000111111100 1123457888999888887889999999987887777776777899999999999 4555
Q ss_pred ecCCCeEEEEecCCC
Q 015301 373 SSWDCNIVRWEIPGI 387 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~ 387 (409)
...++.|..|++...
T Consensus 286 ~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 286 EHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTTEEEEEECSSC
T ss_pred eCCCCeEEEEeCCCC
Confidence 566789999998754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-14 Score=123.78 Aligned_cols=290 Identities=10% Similarity=0.016 Sum_probs=184.4
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEc
Q 015301 50 NDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDV 114 (409)
Q Consensus 50 ~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~ 114 (409)
|+++.+++.... +.|.++|..+.+.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 567766665542 6899999999966665543332 3 799999999998886 3678999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.+.+............ + ........+.++|||++++++.. ++.|.+.|+.+++.+..+.... . ...
T Consensus 157 ~t~~vv~~I~v~g~~r---~-----~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~ 224 (426)
T 3c75_H 157 VTFLPIADIELPDAPR---F-----LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHI 224 (426)
T ss_dssp TTCCEEEEEEETTCCC---C-----CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEE
T ss_pred CCCcEEEEEECCCccc---c-----ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eee
Confidence 9887644333210000 0 00012456899999999999874 5789999999999988886422 1 223
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceee----eeeccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANG----VLMGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.|.....+++.+.||.+.+.+.. .++... .+.....++ ..+.+.+++..++.....+.+.+.|+.......
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred ccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 32334566667778877777752 222221 111111111 235678888888777888999999986522110
Q ss_pred cccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeC----------CCe
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSS----------DNS 336 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~ 336 (409)
.. ......... ...........+.++|+++.+++... ++.
T Consensus 301 ~~-----------------------------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 301 RA-----------------------------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp CC-----------------------------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred ee-----------------------------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 00 000000000 00000000012357888887777642 357
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
|.++|..+.+.+.++... .....+.|+||++ +|+++. .++.|.++|+.+.+..
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999999998642 3588999999999 888877 5899999999887654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-14 Score=116.67 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=163.4
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++++|||++++++. .++.|.+||..+.+....+....+ .......++|+|||++|.++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999988775 357899999999866655432210 0113456899999999998864 689
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH---- 183 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~---- 183 (409)
|.++|+.+.+......... . ...+....+.+++.+.||.+.+.++.+ ++.......+
T Consensus 162 VsVID~~t~~vv~tI~v~g-----------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPD-----------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEEETTTTEEEEEEECCS-----------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEEECCCCcEEEEEECCC-----------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999999987654332211 1 112222344566667788888888765 4443221111
Q ss_pred CCCeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----------ccccceeEEEEcCCCCeEEEEeC-
Q 015301 184 KSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 184 ~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
..++. ...|.++++.+++ .+.+|.|.+.|+.. ........+. -..+....++++++++.++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~--~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS--GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT--SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCC--CcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 12222 2456546776555 55589999999741 1111222221 01234455778999888877643
Q ss_pred ---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 252 ---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 252 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
.++|.+.|+.+. +.+..+... ...+++.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence 257889998873 333333221 235677899
Q ss_pred CCCC-EEEEE-eCCCeEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 323 TAQK-YIYTG-SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 323 ~~~~-~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
+|++ +|++. ..++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 9997 66665 45899999999999999998743 34455666665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-13 Score=112.79 Aligned_cols=251 Identities=13% Similarity=0.131 Sum_probs=157.7
Q ss_pred eecCCCCeEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCeeeeeee-ecccccceEEEEEeCCC-CcEEEEEecC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVA-------ASQESNIKVYNVDKNWKIQKDI-ETKALRWTITDTSLSPD-QRFLVYASIC 106 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t-------~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~d 106 (409)
+...-....+++|+++|.++++ ...++.|.+|+..++....... ...++...+.+++++++ ++++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999998888 5678899999987764322111 00123346899999999 76555444 4
Q ss_pred CEEEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---------------CeEEEEE
Q 015301 107 AIVNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---------------NFIYVYD 170 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~v~d 170 (409)
+.|.+||.. ++.... ..... ......+.+++++++|+++++...+ +.|..+|
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSE-----------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTT-----------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEeCC-CCEEEEEeccCC-----------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 578899987 543322 11100 0111247899999999877666544 5678887
Q ss_pred CCCCeeeeEEcCCCCCeEEEEEe----CCCCcEEEEeeCCCeEEEecccccccCCc-----eeeeeeccc-cceeEEEEc
Q 015301 171 LQANKCSLRIPAHKSDVNTVCFA----DETGHLIFSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHL-EGITFIDSR 240 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~-~~v~~~~~~ 240 (409)
.. ++..... .+......++++ |....++++...++.|.+||+.. .+. ....+..+. ..+..++++
T Consensus 160 ~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 160 TD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp TT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred CC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEEC
Confidence 65 5543322 233456788887 53333445556788999999641 121 222233333 567889999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
++|+++++...++.|.+||..+.. .+..+..+. ....+++
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~----------------------------------~~~~~~~~~------~~~~~i~ 274 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQ----------------------------------PKMRIRCPF------EKPSNLH 274 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBS----------------------------------CSEEEECSS------SCEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCc----------------------------------EeEEEeCCC------CCceeEE
Confidence 999988887788899999987421 122222211 1234556
Q ss_pred ecCCCCEEE-EEeCCCeEEEEEccC
Q 015301 321 YSTAQKYIY-TGSSDNSVYIYDLVS 344 (409)
Q Consensus 321 ~s~~~~~l~-~~~~dg~v~i~d~~~ 344 (409)
++|+++.|+ +...++.|..|++..
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 789999554 445568899999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-12 Score=109.81 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=152.9
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeec-ccc---cceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KAL---RWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++|||||++|+++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 999999999998885 3678999999877555443221 000 123568999999999998874 578
Q ss_pred EEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEc-----
Q 015301 109 VNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIP----- 181 (409)
Q Consensus 109 i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~----- 181 (409)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~-------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 99999 88765322 1110 123444544 34556667899999999 777663322
Q ss_pred CCCCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeEEEEe
Q 015301 182 AHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 182 ~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
....++ ....+. +++..++..+..+.+.+.|+... .......+.. .......+.++|+++.+++..
T Consensus 209 ~~~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 209 TAAQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAA--GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred cCCcceeecceeE-ecCCEEEEEcCCceEEEEeccCC--cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 111221 234555 34444444446789999996411 1111111110 122344477899988877764
Q ss_pred C----------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 251 K----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 251 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
. ++.|.++|+.+. +.+..+.... ..+.+.
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i~ 324 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAIS 324 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeEE
Confidence 3 357999998773 2233332211 235668
Q ss_pred ecCCCC-EEEEEe-CCCeEEEEEccCCceEEEe
Q 015301 321 YSTAQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 321 ~s~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~ 351 (409)
++|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999 777777 4899999999999998884
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-13 Score=117.97 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=158.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC--EEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~~w~~~~~~ 118 (409)
.....++|+++|+++++...++.|++||.+++... ....... ... ++|+|+++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-~~~~~~~---~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-TVHPGFK---GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-EEEETCC---BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-EeeccCC---CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998888777899999999877433 3222221 233 89999999998888765 78888876543
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE----EcCCCCCe-E-EEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDV-N-TVCF 192 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v-~-~~~~ 192 (409)
...... . ........+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|
T Consensus 206 ~~~~~g--~---------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 206 APTRIG--Q---------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp CEEEEE--E---------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eeEEee--e---------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 211110 0 0000122477899999555566677788999999987754322 22222222 3 9999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---------------ccceeEEEEcCCCCeEEEEe-CCCcEE
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------------LEGITFIDSRRDGRYFISNG-KDQTTK 256 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 256 (409)
+|.++.++++-..++.|+.|+.. +. ...+.++ -.....++++++|+++++-. .++.|+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 94467777777788999999953 22 2222222 13478899999999777777 788999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
.|++.+............ . +. ..+ ............+++++++.++++-..+++
T Consensus 349 ~~~~~~G~v~~~~g~~~~-~--------------------g~----~~g-~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDV-A--------------------SQ----IDG-TPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEETTTTEEEEEEECTTC-B--------------------SC----CCB-STTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred EEECCCCEEEEEeCCCCC-C--------------------Cc----CCC-ChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 999755321110000000 0 00 000 000000112345678888888888888888
Q ss_pred EEEEEc
Q 015301 337 VYIYDL 342 (409)
Q Consensus 337 v~i~d~ 342 (409)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-13 Score=110.33 Aligned_cols=228 Identities=9% Similarity=0.065 Sum_probs=147.5
Q ss_pred eEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
-..+..|+|++ ..+++...++.|..||..++..... .. ...+.+++++++|++++ +. +..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~----------------~~~~~~i~~~~dG~l~v-~~-~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM----------------DAPVSSVALRQSGGYVA-TI-GTK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC----------------SSCEEEEEEBTTSSEEE-EE-TTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC----------------CCceEEEEECCCCCEEE-EE-CCe
Confidence 35678899965 4555666788999999987654211 10 12588999999999544 44 678
Q ss_pred EEEEECCCCeeeeEEcC----CCCCeEEEEEeCCCCcEEEEeeCC---------CeEEEecccccccCCceeeeeecccc
Q 015301 166 IYVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
|.+||.++++....... ....+.++++. ++++++++.... ..-.+|.+. ..+. ...+..+..
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d---~~g~-~~~~~~~~~ 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLF---PDHH-VKKYFDQVD 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEEC---TTSC-EEEEEEEES
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEE---CCCC-EEEEeeccc
Confidence 99999988775433321 12347889998 788876654321 223444432 1222 222333445
Q ss_pred ceeEEEEcCCCCeEEE-EeCCCcEEEeeCC--CCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 233 GITFIDSRRDGRYFIS-NGKDQTTKLWDIR--KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
....++|+|+++.|+. .+.++.|.+|++. +..... .+.+..+....
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------------------------~~~~~~~~~~~-- 198 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------------------------RRSVYKLEKEE-- 198 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------------------------EEEEEECCGGG--
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------------------------cEEEEECCCCC--
Confidence 5688999999987654 4557889999874 211000 00111111111
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEee
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 373 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 373 (409)
.....++++++|++.++....+.|..||..+++.+..+..+...+++++|. |+++.|+.+
T Consensus 199 ----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 199 ----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred ----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 122345688899888888888899999999999999998877889999998 888855443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-13 Score=117.21 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=159.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-- 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-- 164 (409)
.+..++|+++++++++...++.|++||..++......... . ... ++|+++++.|+++..++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------------~-~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------------K-GGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------------C-BCB-CEECTTSSEEEEEBSSTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------------C-CCc-eeEecCCCcEEEEecCCCc
Confidence 5889999999997777777899999999876653322110 0 233 89999999998888765
Q ss_pred eEEEEECCCCeeeeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee----eeccccce--
Q 015301 165 FIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV----LMGHLEGI-- 234 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v-- 234 (409)
.|.+++...+.....+ ......+.+++++|.++.+++ +..++.|+.||.. ....... ..++...-
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSSC
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECC----CCCEEEEecccccCCCCCCcc
Confidence 8999998766544344 224567789999933555444 6778899999964 2222111 11222222
Q ss_pred eEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 235 TFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 235 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
..++|+|+ +.++++-..++.|+.|+...... ...... .. .+ ...+ .......
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~-~~--------------------~g----~~dg-~~~~~~~ 322 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSA-TQ--------------------KT----VQDG-LREEALF 322 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECT-TC--------------------CS----CBCE-EGGGCBC
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCC-CC--------------------CC----cCCC-cccccEe
Confidence 38999995 55566666678899998764200 000000 00 00 0000 0000001
Q ss_pred EEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCceEEEeccC---------------CcceeeeEEecCcCeEEeecCCC
Q 015301 314 RCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFH---------------NAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
.....++++++|+++++-+ .++.|+.|++.+++. .++.++ -.....+++++++.++++-..++
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 1234567889999888877 889999999877764 444333 13578899999988888888889
Q ss_pred eEEEEecC
Q 015301 378 NIVRWEIP 385 (409)
Q Consensus 378 ~i~iw~~~ 385 (409)
+|+.++++
T Consensus 402 ~Ir~i~~e 409 (409)
T 3hrp_A 402 AIRKYAVE 409 (409)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99988763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-12 Score=103.85 Aligned_cols=234 Identities=8% Similarity=-0.035 Sum_probs=156.4
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCce--eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+++++++++|....+.. ...+..+-+...... +..+...+.+++++++|+++++...++.|..||.. +.. ...
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~- 97 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEY- 97 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEe-
Confidence 567889999997655542 333444433322111 22344679999999999988877667889999987 432 221
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
........+.++++.++++++++...++.|..++.. ++..... .. .....+..+++.++++..++
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~-------------~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LP-------------NKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CS-------------STTCCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CC-------------CCCCCceeEEECCCCCEEEE
Confidence 222222468999999999888877778899999886 4322110 00 01224789999999986655
Q ss_pred EEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 237 (409)
...++.|..+|. +++.... ...+...+..+++. ++++++++....+.|.+||.. +.... ....+...+.++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTT-----GEISEYDIPTPNARPHAI 235 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEE
T ss_pred ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCC-----CcEEEEECCCCCCCceEE
Confidence 555788999998 5554432 23345678999998 688877777677889999952 22222 122345668899
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+++++|+++++...++.|..||..
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECTT
T ss_pred EECCCCCEEEeccCCCeEEEECCC
Confidence 999999877766667889999873
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=127.18 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=131.4
Q ss_pred cCCCCeEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----
Q 015301 38 GMNSRVYTSQFSNDGSFFVAA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA----- 107 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 107 (409)
+|...+..++|||||++||-+ +.+..|++||+++++.+.... .. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 466679999999999999843 333579999999986543311 11 012567899 999999888774
Q ss_pred --------EEEEEEcCCCccccccceeceeeeeeeecCCCC-cceeeEEEEEcCCCCeEEEEEe----cCeEEEEECCCC
Q 015301 108 --------IVNIVDVGSSARESLANVTEIHKGLDFSADGDE-DEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQAN 174 (409)
Q Consensus 108 --------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~ 174 (409)
.|++|++.+........... .. +......+.|+|||++|+.... ...|+++|+.++
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 49999988765422211111 01 1223678899999998876554 248999999776
Q ss_pred e-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 175 K-CSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 175 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
. ....+..+....... +++.++.+++....+ +.|..+|+... .......+..|...+. .|+++++.|+...
T Consensus 270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP--GPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC--CGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC--CccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 3 344555565555555 553445555555443 57888887521 1111234555655554 8889998887766
Q ss_pred CCC---cEEEeeCCC
Q 015301 251 KDQ---TTKLWDIRK 262 (409)
Q Consensus 251 ~dg---~i~iwd~~~ 262 (409)
.++ .|.+||+..
T Consensus 345 ~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 345 MVDATARVEQFDYEG 359 (693)
T ss_dssp EETTEEEEEEECTTS
T ss_pred EECCeeEEEEEECCC
Confidence 544 688888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-13 Score=114.18 Aligned_cols=284 Identities=6% Similarity=-0.054 Sum_probs=170.1
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeeeee----ecccccceEEEEEeCCCCcEEEEEec-----CCEE
Q 015301 41 SRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDI----ETKALRWTITDTSLSPDQRFLVYASI-----CAIV 109 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i 109 (409)
..+..++++|+|+++++.. .++.++||.++++ .+.... ....+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343566666544 222111 11123457999999999887665543 5789
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-E---ecCeEEEEECCCCeeeeEEcCCCC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-G---SDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
.+||+.+++......... ....+...+..+++++++..++.+ . .++.|.+||+.+++....+..|..
T Consensus 96 ~~~d~~tg~~~~~~~~~~---------~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPP---------PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp EEEETTTTEEEEEEECCT---------TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred EEEECCCCeEEEEEECCh---------hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 999998876432222111 001112246889999865455444 3 578999999998887666655432
Q ss_pred CeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCC
Q 015301 186 DVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKM 263 (409)
Q Consensus 186 ~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 263 (409)
... ...+. .++..+.+.+.+|.++.|. ..+..++++|+++.|+++..++ .+..++....
T Consensus 167 ~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 167 IAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp TSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred cccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 111 13344 4566666667777766554 1356799999999888887766 4444432210
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
........ .+ ...+.. .++. .....++++++|.++++...++.|.+||..
T Consensus 228 ~~~~~~~~-------------------~~----~~~~~~-~g~~------g~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 228 SNLQLTDA-------------------EL----GSKIER-YSEK------PICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp TCTTCCHH-------------------HH----HTTCEE-EEEC------CSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred cCCCCChh-------------------hh----hcceEe-cccC------CCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 00000000 00 000000 0110 012245688899999999899999999985
Q ss_pred CCceEEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 344 SGAQVAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 344 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus 278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 6654333322 244688999999988777776555554443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-14 Score=117.87 Aligned_cols=175 Identities=14% Similarity=0.067 Sum_probs=127.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--------eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
+++.+++++...++++|+.++ +++|+++.... .... ....+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 699999999999999999885 77799754320 1110 1122445 999999 89999998 889999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+........ .+..++.++.+.+.. +++++.||.|.+||+.++.... +...|++++|+
T Consensus 113 v~sl~~~~~~~---------------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 113 LEELSEFRTVT---------------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp SSSTTCEEEEE---------------ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred chhhhccCccc---------------eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 98765322111 112246777776543 8888999999999999877643 34689999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCce--eeee------e---ccccceeEEEEcCCCCeEEEEe
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVL------M---GHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
++| ++.|..||++++|+.. .... ...+ . +|...|.++.|.+++.++++-.
T Consensus 172 -pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 172 -NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 677 6789999999999864 3332 2233 2 3678899999999998887643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=113.87 Aligned_cols=169 Identities=8% Similarity=0.065 Sum_probs=122.6
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecC----------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVN----------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~----------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~ 71 (409)
...|++|++...+++++.. .++...... .+.....+.+ |+.++| |+++|+++ .++.|++||+.+
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 4568999988766665533 233221111 2223445777 999999 99999999 889999999987
Q ss_pred CeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 72 NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
....... ..+...+.++.+.+.. +++++.||.|.+||+.++.... . ...|.+++|+
T Consensus 116 l~~~~~~---~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~----------------~~~Vs~v~WS 171 (388)
T 1xip_A 116 LSEFRTV---TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L----------------AQNVTSFDVT 171 (388)
T ss_dssp TTCEEEE---EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E----------------EESEEEEEEC
T ss_pred hhccCcc---ceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c----------------cCCceEEEEc
Confidence 6433322 2334468888877653 8888999999999998776432 1 1159999999
Q ss_pred CCCCeEEEEEecCeEEEEECCCCee--eeEE------c---CCCCCeEEEEEeCCCCcEEEEe
Q 015301 152 TDGQELVAAGSDNFIYVYDLQANKC--SLRI------P---AHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
|+| ++.|..||.+++|+...++. ..++ . +|...|.++.|. +++.++++-
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl-~~~~flv~y 231 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQDFLAVF 231 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSEEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe-cCCeEEEEE
Confidence 999 67888999999999887775 5556 2 378899999999 788877763
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-12 Score=105.93 Aligned_cols=227 Identities=10% Similarity=-0.017 Sum_probs=145.3
Q ss_pred ceeeEEecCcee-Eee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-
Q 015301 4 GREVNYSGRGRF-SAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE- 80 (409)
Q Consensus 4 ~~~~~~s~dg~~-~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~- 80 (409)
.+..+|+|+|+. +.+ .....+..+.+......+..+...+..++++++|+++++...++.|.+|+.+ +. ......
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~~ 124 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVGR 124 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEec
Confidence 356889999983 333 2233444444444445566677889999999999977766666789999986 32 222211
Q ss_pred ccc-ccceEEEEEeCCCCcEEEE----Eec-------------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc
Q 015301 81 TKA-LRWTITDTSLSPDQRFLVY----ASI-------------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 81 ~~~-~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
... ....+..++++|+|+++++ |.. .+.|..+|..+++..... . .
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~-~------------- 187 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---D-L------------- 187 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---E-E-------------
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---c-C-------------
Confidence 111 1124678999999998886 332 256777777655543221 0 0
Q ss_pred eeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeee--eEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 143 FGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCS--LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
.....++|+|+++.|+++... +.|.+|++..+... ..+ ......+..+++. +++++.+ ++.+ .|.+|+
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEE-CCSS-EEEEEC
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEE-ecCC-cEEEEC
Confidence 036789999999988877665 68999998765411 111 2223445678888 7888544 4444 499999
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
. .++....+..+. .+..++|.++++.|+.++.++ +..++
T Consensus 265 ~-----~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 265 S-----DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp T-----TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C-----CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4 455555555444 588999999998888877764 44333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-11 Score=99.76 Aligned_cols=224 Identities=9% Similarity=0.061 Sum_probs=144.8
Q ss_pred ceeeEEecCc-eeEeec-cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRG-RFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.+...|++++ .++.++ ....+..+-+.........+...+.+++++|+|+++++. ++.|.+||.+++... .....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~-~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV-VLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE-EEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE-EEEec
Confidence 4678899854 444433 233455554444444444556789999999999965543 567999999877432 22221
Q ss_pred c--cccceEEEEEeCCCCcEEEEEecC---------CEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 82 K--ALRWTITDTSLSPDQRFLVYASIC---------AIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 82 ~--~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .....+..++++|+|+++++.... ..-.+|.+... +... .... ......++
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~-------------~~~pngi~ 155 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQ-------------VDISNGLD 155 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEE-------------ESBEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeec-------------cccccceE
Confidence 1 123468999999999977654321 23345555432 1111 1100 11367899
Q ss_pred EcCCCCeEEEEE-ecCeEEEEEC--CCCeee-----eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 150 FSTDGQELVAAG-SDNFIYVYDL--QANKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 150 ~~~~~~~l~~~~-~d~~i~v~d~--~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
|+|+++.|+.+. .++.|.+|++ .++... ..+..+...+..+++. +++++.++....+.|..||.. ++
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~----tG 230 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPV----TG 230 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTT----TC
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCC----Cc
Confidence 999998776554 4789999987 455432 2223334567899998 788888887778899999953 57
Q ss_pred ceeeeeeccccceeEEEEc-CCCCeEEEEeC
Q 015301 222 RANGVLMGHLEGITFIDSR-RDGRYFISNGK 251 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 251 (409)
+.+..+..+...+++++|. |+++.|+..+.
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 7777777776789999998 88877665554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=110.37 Aligned_cols=270 Identities=7% Similarity=-0.108 Sum_probs=164.9
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEcCCCccccccceeceeeee
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
+|.++|.++++.+........ + .+.++||+++++++. .++.|.+||..+.+............
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 788999999977666543332 4 699999999999886 36889999999987654433220000
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEE--EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYV--YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 208 (409)
+. .......++++|||++++++.. +..+.+ +|..+ +..+.... . ..+.|.....+++.+.||.
T Consensus 120 -~~-----~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 120 -FS-----VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp -CC-----BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTS
T ss_pred -cc-----cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCC
Confidence 00 0012556899999999999875 457888 99877 44443211 1 1223334455666778888
Q ss_pred EEEeccccccc-CCceee----eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 209 CKVWDRRCFIS-KGRANG----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 209 i~iwd~~~~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
+.+.|+..... .++... .+.-...+. . .+++..++..+. +.+.+.|+.......
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v---------------- 245 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM---------------- 245 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE----------------
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE----------------
Confidence 88888641000 011110 111112333 3 556666666666 889999986421100
Q ss_pred cccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC---------CCeEEEEEccCCceEEE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS---------DNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~ 350 (409)
+..+.... .............++|+++.++++.. ++.+.++|+.+++.+.+
T Consensus 246 ----------------~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 246 ----------------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp ----------------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred ----------------EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 00000000 00000000001358889988887643 23567999999999998
Q ss_pred eccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 351 LDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
+.... ....++|+||++ .+++.. .++.|.++|+.+.+..
T Consensus 310 i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 310 ISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 87543 688999999998 566666 5999999999887643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-12 Score=107.27 Aligned_cols=244 Identities=13% Similarity=0.113 Sum_probs=153.5
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeec-cc---ccceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KA---LRWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++++|||++|+++. .++.|.++|..+.+.+..+... .. .......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999988775 3678999999998665554321 00 0112456899999999999874 578
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeE----EcCC
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLR----IPAH 183 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~ 183 (409)
|.+.|+.+.+......... . ....|++ ..+++.+.||.+.+.+..+++.... +...
T Consensus 202 VsVID~~t~kvv~~I~v~g-----------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~ 262 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD-----------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE 262 (426)
T ss_dssp EEEEETTTTEEEEEEECCS-----------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred EEEEECCCCeEEEEEEcCC-----------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence 9999999987644332211 1 1222322 3445555667666666655544321 1111
Q ss_pred CCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----------ccccceeEEEEcCCCCeEEEEeC-
Q 015301 184 KSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 184 ~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
..++ ..+.+. +++..++..+..+.+.+.|+... .......+. ........++++|+++.+++...
T Consensus 263 ~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~--~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~ 339 (426)
T 3c75_H 263 DELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAE--GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ 339 (426)
T ss_dssp TSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSS--CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred CCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCC--ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence 2221 234567 66666666677899999996411 100111110 01122234689999887776642
Q ss_pred ---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 252 ---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 252 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
++.|.+.|+.+. +.+..+... ...+.+.++
T Consensus 340 ~~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~s 378 (426)
T 3c75_H 340 RDEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINVS 378 (426)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred cccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEEc
Confidence 357999999883 333333221 234667899
Q ss_pred CCCC-EEEEEe-CCCeEEEEEccCCceEEEe
Q 015301 323 TAQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 323 ~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~ 351 (409)
|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 379 pDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 379 QDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999 888887 5899999999999999887
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-11 Score=101.20 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=141.7
Q ss_pred EEEEEeCCCCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 88 ITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 88 v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
..+..|+|++. .+++...++.|..||..+++.... .. ...+.+++++++|+++++. +..|
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~----------------~~~v~~i~~~~dg~l~v~~--~~gl 111 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL----------------PFMGSALAKISDSKQLIAS--DDGL 111 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC----------------SSCEEEEEEEETTEEEEEE--TTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC----------------CCcceEEEEeCCCeEEEEE--CCCE
Confidence 45678999754 555666788999999987653211 00 1148899999999876654 3459
Q ss_pred EEEECCCCeeeeEEcC----CCCCeEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 167 YVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
.+||..+++....... ....+.+++++ ++++++++...+ +...+|.+. .+.. ..+..+......++
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~----~g~~-~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGKV-TKLFADISIPNSIC 185 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTEE-EEEEEEESSEEEEE
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe----CCcE-EEeeCCCcccCCeE
Confidence 9999988875433221 12357899999 788876654321 234444432 2222 22223334567899
Q ss_pred EcCCCCeEEEE-eCCCcEEEeeCC--CC-cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 239 SRRDGRYFISN-GKDQTTKLWDIR--KM-SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 239 ~~~~~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
|+|+++.++.+ ..++.|.+||+. +. .... ...+..+.... .
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~------~ 230 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIK------G 230 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSS------S
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCC------C
Confidence 99999876555 456889999975 21 1000 00011111000 0
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEee
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 373 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 373 (409)
....+.++++|.+.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|+.+
T Consensus 231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 1124567888988877777789999998 677778887777789999998 887755443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-11 Score=102.73 Aligned_cols=208 Identities=8% Similarity=-0.021 Sum_probs=132.5
Q ss_pred CCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
.....+...........|+|+|+ ++++...++.|..|+.. +. ...... ....+..++++++|+++++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEE
Confidence 34456666777788999999998 56677778899999984 32 222222 23368899999999977766666889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE----EEe-------------cCeEEEEECC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA----AGS-------------DNFIYVYDLQ 172 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~v~d~~ 172 (409)
.+|+.. ++......... . .....+..+++.++|+..++ |.. .+.|..+|..
T Consensus 110 ~~~~~~-g~~~~~~~~~~---~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 110 TRSDAD-GQAHLLVGRYA---G--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEECTT-SCEEEEECEET---T--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCC-CCEEEEEeccC---C--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 999975 43222111100 0 00123678999999987775 321 2568888887
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC------CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCe
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 245 (409)
+++..... .......++|+ ++++.|+.+... +.|.+|++.... ......+ .........++++++|++
T Consensus 178 ~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCE
Confidence 77654433 34567889999 888877776654 789999974210 0000111 112334567889999984
Q ss_pred EEEEeCCCcEEEeeCCC
Q 015301 246 FISNGKDQTTKLWDIRK 262 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~ 262 (409)
.++..+| |.+|+...
T Consensus 253 -wv~~~~g-v~~~~~~g 267 (305)
T 3dr2_A 253 -WSSSGTG-VCVFDSDG 267 (305)
T ss_dssp -EECCSSE-EEEECTTS
T ss_pred -EEecCCc-EEEECCCC
Confidence 4444454 99998743
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=119.36 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=152.2
Q ss_pred ccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 84 LRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
+...+..++|||||++||.+. ....|++||+.+++.... ... . .....++|+ |++.|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~----~-----------~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK----D-----------VKFSGISWL-GNEGFF 189 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE----E-----------EESCCCEEE-TTTEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC----C-----------ceeccEEEe-CCCEEE
Confidence 344788899999999998653 225799999999874322 110 0 013567899 999999
Q ss_pred EEEecC-------------eEEEEECCCCee----eeEEcC-CCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccc
Q 015301 159 AAGSDN-------------FIYVYDLQANKC----SLRIPA-HKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRC 216 (409)
Q Consensus 159 ~~~~d~-------------~i~v~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~ 216 (409)
.++.+. .|++|++.++.. +..... |......+.|+ +++++|+.... +..|.++|+..
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCC
Confidence 888774 499999987643 222233 44567889999 78887755432 35899999751
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-C---CcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-D---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
.......+..+....... +++++..|+..+. + +.|..+|+.+...
T Consensus 269 ---~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--------------------------- 317 (693)
T 3iuj_A 269 ---ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--------------------------- 317 (693)
T ss_dssp ---TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------------
T ss_pred ---CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------------
Confidence 112344455555555554 5666666554443 3 5788888876321
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CC--eEEEEEccCCceEEEec-cCCcceeeeEEecCcC
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DN--SVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYP 368 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~ 368 (409)
.....+..+.... . .++++++.|+.... ++ .|++|++..+ ....+. ...+.+..+.++++++
T Consensus 318 -----~~~~~l~~~~~~~------~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 318 -----AHWRDLIPERQQV------L--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp -----GGCEEEECCCSSC------E--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCS
T ss_pred -----cccEEEecCCCCE------E--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCC
Confidence 0112222222111 1 46667887776655 43 6899998744 444443 2445678888898888
Q ss_pred eEEeecCC----CeEEEEecCCCc
Q 015301 369 MLISSSWD----CNIVRWEIPGIG 388 (409)
Q Consensus 369 ~l~s~~~d----g~i~iw~~~~~~ 388 (409)
.|+....+ +.|+.||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 65544333 889999987654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-10 Score=97.39 Aligned_cols=222 Identities=11% Similarity=0.010 Sum_probs=139.0
Q ss_pred ceeeEEecCc-eeEeec-cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRG-RFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
....+|+|++ .++..+ ....+..+-+.........+...+.+++|+|+|+++++. .+ .|.+||.+++.. ......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EEEeeC
Confidence 3568899974 433332 223344443333322222345689999999999877765 44 499999887743 222221
Q ss_pred c--cccceEEEEEeCCCCcEEEEEec------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 82 K--ALRWTITDTSLSPDQRFLVYASI------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 82 ~--~~~~~v~~~~~s~~~~~l~~~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
. .....+.+++++|+|+++++... .+.|..++ +++..... .. ......++|+|+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---~~-------------~~~~~~i~~s~d 189 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---AD-------------ISIPNSICFSPD 189 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---EE-------------ESSEEEEEECTT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---CC-------------CcccCCeEEcCC
Confidence 1 11246899999999997765442 24555555 33321110 00 013678999999
Q ss_pred CCeEEEEE-ecCeEEEEECC--CC-ee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCcee
Q 015301 154 GQELVAAG-SDNFIYVYDLQ--AN-KC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 154 ~~~l~~~~-~d~~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
++.++.+. .++.|.+||+. ++ +. ...+......+..+++. +++++.++...++.|..||. .++..
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-----~g~~~ 263 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-----DGNHI 263 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-----TCCEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-----CCCEE
Confidence 98776654 46899999985 55 32 22223334557789998 78887777766788999995 34555
Q ss_pred eeeeccccceeEEEEc-CCCCeEEEEeCC
Q 015301 225 GVLMGHLEGITFIDSR-RDGRYFISNGKD 252 (409)
Q Consensus 225 ~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 252 (409)
..+..+...+.+++|. ++++.|++++..
T Consensus 264 ~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 264 ARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 5565566679999998 888776655443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-12 Score=105.04 Aligned_cols=234 Identities=14% Similarity=0.042 Sum_probs=145.4
Q ss_pred ceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 86 WTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+..++++|+|+.+++.. .++.++||.+.+++..... .. ......+...+..++++++++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p---~~------~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFP---PQ------SGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESC---CC------CSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCC---Cc------ccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 3689999999999888864 2343556665433321110 00 0111234457999999999876555433
Q ss_pred ----cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeec
Q 015301 163 ----DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 163 ----d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
++.|.+||+.+++.+..+.. +...+..+++.+.++..+++.. .++.|.+||+. .++....+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~ 163 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG 163 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence 47899999999987766642 2245689999944455556655 67899999964 4444444433
Q ss_pred ccccee-EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 230 HLEGIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 230 ~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
|..... ...+.++|..+.+...++.++.|...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------------------------------------- 196 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------------------------------------- 196 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence 322110 13344466666666667766555311
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCC-eEEEEEccC---Cc-----eEE--EeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDN-SVYIYDLVS---GA-----QVA--KLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg-~v~i~d~~~---~~-----~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
...++++|+++.|+.+..++ .++.++... +. ... ...++......++++++|.++++...++
T Consensus 197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence 13457899999888887765 555555321 10 000 1113444567899999999888888899
Q ss_pred eEEEEecCC
Q 015301 378 NIVRWEIPG 386 (409)
Q Consensus 378 ~i~iw~~~~ 386 (409)
.|.+||..+
T Consensus 270 ~V~~~d~~~ 278 (343)
T 2qe8_A 270 AIGVITSAD 278 (343)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 999999833
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-11 Score=110.18 Aligned_cols=309 Identities=9% Similarity=0.076 Sum_probs=179.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc--------eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW--------TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+......... ....+++ ++..|++++.|+.|..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999977665432211000 0011222 3567888889999999999998765443
Q ss_pred cee-ceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC---------
Q 015301 124 NVT-EIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD--------- 186 (409)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~--------- 186 (409)
... ..... ..+.. ... .+..+++++. ++.|+.+|.++|+.+..+......
T Consensus 155 ~~~~~~~~~-----------~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 155 NTFEGQKGS-----------LTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTTCCSS-----------CBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred cCCcCcCcC-----------cccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 322 10000 00110 011 1334555543 789999999999998777532211
Q ss_pred -----------------------eEEEEEeCCCCcEEEEeeCCC-------------------eEEEecccccccCCcee
Q 015301 187 -----------------------VNTVCFADETGHLIFSGSDDS-------------------LCKVWDRRCFISKGRAN 224 (409)
Q Consensus 187 -----------------------v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~ 224 (409)
...+++. +++.+++.++.++ .|..+|.+ +++..
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~ 296 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK 296 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence 1356777 6677888777664 48888864 56655
Q ss_pred eeeec--cc-------cceeEEEEcCCC---CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 225 GVLMG--HL-------EGITFIDSRRDG---RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 225 ~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
..+.. |. .....+....+| ..++.++.+|.+.++|.++++.......... .|... +. ......
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~~~~~-~d--~~g~~~ 371 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--NWASG-YD--KHGKPI 371 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEE-EC--TTSCEE
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc--Ccccc-cC--CCCcee
Confidence 54432 21 112223333467 6788999999999999998765443321110 01000 00 000000
Q ss_pred cc----cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-----------------------------------
Q 015301 293 KH----PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----------------------------------- 333 (409)
Q Consensus 293 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------------------------------- 333 (409)
.. ..+.....+.+.... .....++++|++.++++...
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~----~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGA----HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCS----SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred eccccCcCCCccEECcCcccc----cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 00 000000000000000 00113467777777766543
Q ss_pred --------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 --------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 --------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.|.|..||+.+++.+.+++ +..++....+..++.+++.++.||.+++||..+++..
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999988876 4445666677778888888999999999999987753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-11 Score=109.66 Aligned_cols=311 Identities=8% Similarity=0.050 Sum_probs=177.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc-------ceE-EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALR-------WTI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~v-~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+........ ..+ ..++. .+..|++++.|+.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5567777788899999999997766543211100 000 11122 3567888889999999999998865433
Q ss_pred cee-ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE------ecCeEEEEECCCCeeeeEEcCCC------------
Q 015301 124 NVT-EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLRIPAHK------------ 184 (409)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~------------ 184 (409)
... ..... ......++ + .++ .+++++ .++.|..||.++|+.+..+....
T Consensus 148 ~~~~~~~~~------~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 148 DTRADHKRS------YTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp ECCSCTTSC------CBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred cCcCCCCCC------ccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 321 10000 00000011 1 144 344443 36899999999999887764210
Q ss_pred -------------------CCeEEEEEeCCCCcEEEEeeCCCe-------------------EEEecccccccCCceeee
Q 015301 185 -------------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGV 226 (409)
Q Consensus 185 -------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 226 (409)
.....+++. ++..+++.++.++. |..+|.+ +++....
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W~ 290 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVWH 290 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEEE
T ss_pred cccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeEe
Confidence 011256787 66778888887764 8889965 6666655
Q ss_pred eec--cc-------cceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccc-------cccccc
Q 015301 227 LMG--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR-------WMEYPS 287 (409)
Q Consensus 227 ~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 287 (409)
+.. |. .+........+|+ .++.++.+|.++++|.++++......... ..|... .+....
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~~~~pi~~~~ 368 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMKTGRPILDEE 368 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETTTTEEEECHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCccCCCcccchh
Confidence 443 21 1122222223554 78889999999999998876543322111 111110 000000
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC----------------------------------
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---------------------------------- 333 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------------------------- 333 (409)
.. ...+.......+.+..... ....++++|+..++++...
T Consensus 369 ~~--~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 369 NA--AYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp HH--CTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred hc--cccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 00 0000000000000000000 0112456666666665421
Q ss_pred -----------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 -----------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 -----------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|.|+.||+.+++.+.+++.+. ++..-.+...+.+++.++.||.|+.||..+++..
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 3789999999999998887543 4444567777889999999999999999988764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-10 Score=95.18 Aligned_cols=267 Identities=9% Similarity=-0.027 Sum_probs=161.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc------cceEE-EEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL------RWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~------~~~v~-~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
++..+++++.++.|..+|.++++.+......... ...+. .+.. ++..+++++.++.|..+|..+++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3567888888899999999988665443321110 11222 2222 3567778888999999999988764332
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGH 198 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 198 (409)
...... ...++ . .+..+++++.++.|..+|..+++.+.......... ...... +.
T Consensus 130 ~~~~~~-----------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 130 KVAGEA-----------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp ECSSCC-----------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred eCCCce-----------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 221110 00011 1 13467788889999999999999887765432211 222222 35
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeecccc-------ceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-------GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
.++.++.++.+..+|.. +++.......... .+..+...| .+..++.++.++.+..+|.++.+.
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---- 261 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---- 261 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE----
Confidence 67788889999999964 5555444332110 000011111 245677788899999999877332
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+-...... . ..+.. ++..|++++.++.|..+|..+++.+.
T Consensus 262 ------------------------------~w~~~~~~----~----~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 262 ------------------------------MWKRELGS----V----NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp ------------------------------EEEECCCC----E----EEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ------------------------------EeeccCCC----C----CCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 11111100 0 11122 35678888889999999999999887
Q ss_pred Eecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.... ....+...... +..|+.++.+|.|+++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred eecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcE
Confidence 7652 22233334432 45788888899999999987654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-10 Score=105.43 Aligned_cols=323 Identities=9% Similarity=0.013 Sum_probs=172.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCcEEEEEe------cCCEEEEEEcCCCcccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARES 121 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~~w~~~~~~~~~ 121 (409)
++..+++++.|+.|..+|..+++.+.......... ....+..+| ++. +++++ .+|.|+.||..+++...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999997765543320000 001111122 444 44443 36899999999988654
Q ss_pred ccceeceeeeeeee--------cCCC--------CcceeeEEEEEcCCCCeEEEEEecCe-------------------E
Q 015301 122 LANVTEIHKGLDFS--------ADGD--------EDEFGIFSVKFSTDGQELVAAGSDNF-------------------I 166 (409)
Q Consensus 122 ~~~~~~~~~~~~~~--------~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~-------------------i 166 (409)
............+. .... .....-..++++|+...++++..++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 33211000000000 0000 00011235788888888888877753 9
Q ss_pred EEEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCCc---EEEEeeCCCeEEEecccccccCCceeeeeeccc---
Q 015301 167 YVYDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--- 231 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 231 (409)
..+|.++|+.+..++. |. .++...... .++. .++.++.+|.++++|.+ +++.+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999999887754 21 122222222 2444 78899999999999965 454432111000
Q ss_pred -------------------------c-----------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 232 -------------------------E-----------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 232 -------------------------~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
. .-..++++|+..++++...+....++............... .
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~-~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY-Q 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC-C
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc-c
Confidence 0 01136788888888887776655555443310000000000 0
Q ss_pred ccccccccc------------ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 276 YDWDYRWME------------YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 276 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
......... .......+....++.+-.+..+... ....++..+.+++.|+.||.++.||.+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECC
Confidence 000000000 0001111222223333232222110 111344467899999999999999999
Q ss_pred CCceEEEeccCCcc-eeeeEEecCcC-eEEeecC--------------------CCeEEEEecCCCc
Q 015301 344 SGAQVAKLDFHNAP-VRDCCWHPIYP-MLISSSW--------------------DCNIVRWEIPGIG 388 (409)
Q Consensus 344 ~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~s~~~--------------------dg~i~iw~~~~~~ 388 (409)
+|+.+.+++...+. ..-+.|..+|+ |+++.+. .+.+.+|.+....
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~ 571 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA 571 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence 99999888754332 24567788888 5444322 2367888876544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-09 Score=90.10 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=143.3
Q ss_pred CCCcEEEEE-ecCCEEEEEEcCCCcc-cccccee---ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------
Q 015301 95 PDQRFLVYA-SICAIVNIVDVGSSAR-ESLANVT---EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------ 163 (409)
Q Consensus 95 ~~~~~l~~~-~~dg~i~~w~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 163 (409)
+++++|++. -.++.|.++|+.+... ....+.. +..... .......+..+|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------GYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------CEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------CCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 778877765 4678899999975421 1111111 000000 01135667888999 66666555
Q ss_pred CeEEEEECCCCeeeeEEcCCCC---CeEEEEEeCCCCcEEEEee-------------------CCCeEEEecccccccCC
Q 015301 164 NFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS-------------------DDSLCKVWDRRCFISKG 221 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~ 221 (409)
+.|.++|.++++.+.++..... .-..+.|+ ++++.+++.. .+.+|.+||+. ..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~----~~ 238 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR----KR 238 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----TT
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----CC
Confidence 7899999999999988863222 23457788 7888888874 36899999975 44
Q ss_pred ceeeeeecc--ccceeEEEE--cCCCCeEEEEeC------CCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 222 RANGVLMGH--LEGITFIDS--RRDGRYFISNGK------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 222 ~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+....+... ......+.| +|+++++.+++. +++|.+|......-... . .
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~--~-------------------v 297 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE--K-------------------V 297 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE--E-------------------E
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE--E-------------------E
Confidence 555554432 123345545 999998887774 56788776643110000 0 0
Q ss_pred ccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccC---CceEEEeccCC-----------
Q 015301 292 LKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVS---GAQVAKLDFHN----------- 355 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~---~~~~~~~~~~~----------- 355 (409)
+..+.......+..-.. ....-.....+.+|+||++|.++.. .+.|.+||+.. .+.+..+....
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 00000000000000000 0000012335578999999988876 68999999863 34555554221
Q ss_pred ---cceeeeEEecCcCeEEeec
Q 015301 356 ---APVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 356 ---~~v~~~~~s~~~~~l~s~~ 374 (409)
+.-..++++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 1357899999999888877
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-10 Score=101.25 Aligned_cols=322 Identities=9% Similarity=0.022 Sum_probs=171.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeec-ccc-cceEEE-EEeCCCCcEEEEEec------CCEEEEEEcCCCcccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIET-KAL-RWTITD-TSLSPDQRFLVYASI------CAIVNIVDVGSSARES 121 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~s~~~~~l~~~~~------dg~i~~w~~~~~~~~~ 121 (409)
++..+++++.|+.|..+|..+++.+...... ... ...+.+ ... .+..+++++. ++.|+.+|..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888888999999999999776654332 100 001110 011 2345555543 6899999999988654
Q ss_pred ccceeceee-ee-----------eeecCCC-----CcceeeEEEEEcCCCCeEEEEEecC-------------------e
Q 015301 122 LANVTEIHK-GL-----------DFSADGD-----EDEFGIFSVKFSTDGQELVAAGSDN-------------------F 165 (409)
Q Consensus 122 ~~~~~~~~~-~~-----------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~-------------------~ 165 (409)
......... .. .+..... ........++++|++..++++..++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 332211100 00 0000000 0011123578888888888877654 5
Q ss_pred EEEEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccc--
Q 015301 166 IYVYDLQANKCSLRIPA--HK-------SDVNTVCFADETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
|..+|..+++.+..++. |. .....+... .++ ..++.++.+|.++++|.+ +++.+.......
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVN 359 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEeccccccccC
Confidence 99999999999887753 21 112222332 356 689999999999999965 555544332110
Q ss_pred ---------cce------------------------eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc-cccc---c
Q 015301 232 ---------EGI------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD-NSRL---R 274 (409)
Q Consensus 232 ---------~~v------------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~ 274 (409)
.++ ..++++|+..++++...+-...++........... .... .
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 001 14678888888887766544444433210000000 0000 0
Q ss_pred cc---cccccccccc--ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 275 DY---DWDYRWMEYP--SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 275 ~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
.. .+........ .....+....++.+-.+.... ..+...++.++.+++.++.||.+++||..+++.+.
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-------CCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 00 0000000000 000111111122222221110 01222345567889999999999999999999999
Q ss_pred EeccCC-cceeeeEEecCcC-eEEeecC----------------CCeEEEEecCC
Q 015301 350 KLDFHN-APVRDCCWHPIYP-MLISSSW----------------DCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~~~-~~v~~~~~s~~~~-~l~s~~~----------------dg~i~iw~~~~ 386 (409)
++.... ....-+.|..+|+ +++..+. .+.+..|.+..
T Consensus 513 ~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 987443 2334456778887 4444222 47899999874
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-10 Score=99.42 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=154.4
Q ss_pred CCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-c-CCCCeEEEEE-----------
Q 015301 96 DQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-S-TDGQELVAAG----------- 161 (409)
Q Consensus 96 ~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~----------- 161 (409)
||++|.+... ++.|.+.|+.+.+......+... ..+..+++ + |+++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g--------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA--------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC--------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC--------------CCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 7888887664 56799999999886554432211 13677887 4 8999998884
Q ss_pred -------ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC---------------------------
Q 015301 162 -------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--------------------------- 207 (409)
Q Consensus 162 -------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------------- 207 (409)
.++.+.++|.++.+....+.-.. ....++++ ++++++++.+.+.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 35689999999999888876433 45677888 7888888887553
Q ss_pred -----------eEEEecccccccCCce-eeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccccccccccc
Q 015301 208 -----------LCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 208 -----------~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
.|.+.|.+.. .+.. +..+. -.....++.++|||+++++++ .+.+|.++|+.+........
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---- 316 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKE--ASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---- 316 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGG--GCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC----
T ss_pred eccCCCeeEECcEEEEeCccc--CCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc----
Confidence 2444443310 0122 22222 123456789999999877765 47899999998632110000
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC----------
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS---------- 344 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~---------- 344 (409)
+ .+........... ......+|+|+|...++...|+.|.+||+.+
T Consensus 317 -----------------l-~~~~~v~~~v~vG-------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 317 -----------------A-DPRSAVVAEPELG-------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp -----------------C-CGGGGEEECCBCC-------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred -----------------c-CcccceEEEcCCC-------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 0 0000011111100 1124557999995555666799999999987
Q ss_pred CceEEEeccCCcce-----eeeEEecCcCeEEeec---CCCeE----------EEEecCCCc
Q 015301 345 GAQVAKLDFHNAPV-----RDCCWHPIYPMLISSS---WDCNI----------VRWEIPGIG 388 (409)
Q Consensus 345 ~~~~~~~~~~~~~v-----~~~~~s~~~~~l~s~~---~dg~i----------~iw~~~~~~ 388 (409)
.+.+.++..|..+- ..+..+|||++|+++. .|..+ .++|++.++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777777665432 3446789999998864 34321 788885443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-08 Score=86.64 Aligned_cols=263 Identities=11% Similarity=0.032 Sum_probs=157.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
++..+++++.++.|..+|.++++.............. ... .+..+++++.++.|..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~---p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR---PVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC---CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC---CEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4567778888999999999988665443222111101 111 14577788889999999998887544332211100
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC----------e-EEEEEeCCCCcE
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD----------V-NTVCFADETGHL 199 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~ 199 (409)
. . .. ...... .+..+++++.++.+..+|..+++.+......... + ..... .+..
T Consensus 177 ~--~----~~----~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~ 241 (376)
T 3q7m_A 177 S--L----RG----ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGV 241 (376)
T ss_dssp --------CC----CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTE
T ss_pred e--e----cC----CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCE
Confidence 0 0 00 011111 1346777888999999999999988766432110 1 11112 2456
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
++.++.++.+..+|.+ +++...... ......+.. ++..++.++.++.+..+|..+.+...
T Consensus 242 v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w------------ 301 (376)
T 3q7m_A 242 VFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW------------ 301 (376)
T ss_dssp EEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE------------
T ss_pred EEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE------------
Confidence 7778889999999964 555444332 223334443 36678888889999999988743211
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
....... .. ...+.. .+..|++++.+|.|+++|..+++.+.........+.
T Consensus 302 ----------------------~~~~~~~-~~----~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~ 352 (376)
T 3q7m_A 302 ----------------------TQSDLLH-RL----LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ 352 (376)
T ss_dssp ----------------------EECTTTT-SC----CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC
T ss_pred ----------------------eecccCC-Cc----ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce
Confidence 1110000 00 001111 256788899999999999999999888765444443
Q ss_pred eeEEecCcCeEEeecCCCeEEEEe
Q 015301 360 DCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 360 ~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
...... +..|+.++.||.|+.|+
T Consensus 353 ~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 353 TEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred eCCEEE-CCEEEEEeCCCEEEEEe
Confidence 322222 44677788899999986
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-13 Score=113.20 Aligned_cols=202 Identities=12% Similarity=0.178 Sum_probs=109.8
Q ss_pred CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
++..+++++.||.|+.||..+++....... . ++.+..+..++..+++++.|+.|+.||.++++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C----------------CSCCCC-----CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C----------------CceecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 577899999999999999999876543332 1 23333344577777777889999999999998
Q ss_pred eeeEEcCCCCC-eE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 176 CSLRIPAHKSD-VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 ~~~~~~~~~~~-v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
.+..+..+... +. ...+ ..+..+++++.++.++.||.+ +++....+..+. ...++|++..+++++.|+
T Consensus 71 ~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg 140 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEY 140 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEE
T ss_pred eeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecCC
Confidence 77666433211 10 1111 135578888899999999965 566655554433 234566888899999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC---CEEEE
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ---KYIYT 330 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~ 330 (409)
.|..||.++++.. ..+.... ...+.++++. ..+++
T Consensus 141 ~v~a~d~~tG~~~----------------------------------W~~~~~~--------~~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 141 TITMYDTKTRELR----------------------------------WNATYFD--------YAASLPEDDVDYKMSHFV 178 (369)
T ss_dssp EEECCCSSSSSCC----------------------------------CEEEEEE--------ECCBCCCCCTTCCCCEEE
T ss_pred EEEEEECCCCCEE----------------------------------EeEeccc--------ccCccccCCccccceEEE
Confidence 9999999874322 1111110 1122333322 45777
Q ss_pred EeCCCeEEEEEccCCceEEEeccCCcceee-eEEecCc
Q 015301 331 GSSDNSVYIYDLVSGAQVAKLDFHNAPVRD-CCWHPIY 367 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~-~~~s~~~ 367 (409)
++.||.|+.||..+++.+.+... ..++.. ..+++++
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 88999999999999998877763 334432 3444444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-10 Score=93.63 Aligned_cols=200 Identities=17% Similarity=0.095 Sum_probs=128.3
Q ss_pred EEC--CCCCEEEE-EeCCCcEEEEEcCCC-e--eeeeeee---c--ccccceEEEEEeCCCCcEEEEEecC------CEE
Q 015301 47 QFS--NDGSFFVA-ASQESNIKVYNVDKN-W--KIQKDIE---T--KALRWTITDTSLSPDQRFLVYASIC------AIV 109 (409)
Q Consensus 47 ~~s--~~~~~l~t-~~~d~~i~vw~~~~~-~--~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i 109 (409)
.++ +++++|+. +..+++|.|+|+.+. . .+....+ . .........+..+|+| .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 88888765 556788999998654 1 2222221 1 0011246778889999 66665544 789
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-------------------ecCeEEEEE
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-------------------SDNFIYVYD 170 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~d~~i~v~d 170 (409)
.++|..+.+........... ..--+.+.|+|+++.+++.. ....|.+||
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGD------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEECTTTCCEEEECCSBCTT------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCC------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 99999988765444322111 01134688899999888774 268999999
Q ss_pred CCCCeeeeEEcCCC--CCeEEEEE--eCCCCcEEEEee------CCCeEEEecccccccCCceeeee--ec---------
Q 015301 171 LQANKCSLRIPAHK--SDVNTVCF--ADETGHLIFSGS------DDSLCKVWDRRCFISKGRANGVL--MG--------- 229 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~--~~--------- 229 (409)
+.+++.+.++.... .....+.| + |+++++++++ .+++|.+|.... ......+.+ ..
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccc
Confidence 99998888876421 23455655 7 7888877766 456887766431 111111110 00
Q ss_pred -------cccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 230 -------HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 230 -------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
-......+.+++||++|.++.. .+.|.+||+..
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0234678999999999888766 67999999864
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-11 Score=98.76 Aligned_cols=249 Identities=10% Similarity=0.031 Sum_probs=149.2
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeecccc----cceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKAL----RWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++|+|||++++++. .+++|.+||..+.+........... ......++++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999998886 3688999999999776654322000 013556899999999999874 457
Q ss_pred EEE--EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCC-----Ceeee--
Q 015301 109 VNI--VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-----NKCSL-- 178 (409)
Q Consensus 109 i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-----~~~~~-- 178 (409)
+.+ +|..+ . ...... .. ..+.|+++ .+++.+.|+.+.+.|+++ ++...
T Consensus 149 v~V~~iD~~t--v-~~i~v~-----------------~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 149 AGLSVPGASD--D-QLTKSA-----------------SC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp EEEEETTTEE--E-EEEECS-----------------SC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred EEEEEEchhh--c-eEEECC-----------------Cc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 888 88866 1 110000 01 11223332 334445677777778776 43321
Q ss_pred --EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeE
Q 015301 179 --RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYF 246 (409)
Q Consensus 179 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 246 (409)
.+.....+. . . +++..++..+. +.+.+.|+.. ........+.. .......+.++|+++.+
T Consensus 207 t~~i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPA--AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CTTSCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCS--SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eeeeeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCC--CcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 111122333 3 4 44455555555 8999999641 11111111110 11122236899999988
Q ss_pred EEEeC---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 247 ISNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 247 ~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+++.. ++.+.++|+.+.+ .+..+.... ...
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg~-------~p~ 317 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNGH-------DSD 317 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEEE-------EEC
T ss_pred EEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECCC-------Ccc
Confidence 76543 2356699998832 233332221 245
Q ss_pred eeeecCCCC-EEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 318 SPEYSTAQK-YIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 318 ~~~~s~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
.+.++|||+ ++++.. .++.|.++|+.+++.+.++.... ....+++.+
T Consensus 318 gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred eEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 668999998 455555 58999999999999999997544 334555543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-13 Score=113.80 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=108.0
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+. .++..+++++.||.|+.||.. +++.+.....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 567899999999999999999999988875 455555555 566778888899999999964 4444433332211
Q ss_pred -cee-EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 233 -GIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 233 -~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
.+. +..+. .+..+++++.|+.+..||.++++. +..+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----------------------------------~w~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----------------------------------QQTLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----------------------------------EEEecCCCc--
Confidence 111 11111 345677888899999999988433 222222110
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCc---CeEEeecCCCeEEEEecCCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY---PMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~ 387 (409)
..++|++..+++++.|+.|+.||..+++.+..+..+. .....++++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1234467889999999999999999998876654321 2334444432 46777888999999999877
Q ss_pred ccc
Q 015301 388 GEA 390 (409)
Q Consensus 388 ~~~ 390 (409)
+..
T Consensus 194 ~~~ 196 (369)
T 2hz6_A 194 DVL 196 (369)
T ss_dssp CEE
T ss_pred cEE
Confidence 653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-10 Score=98.25 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=159.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..+.++...++|. |..++.+ +..+|. ++....... .. ........+. +..|.+++.++.+..+|.. ++..
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~-~~--~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~ 129 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD-TK--KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK 129 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-C-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-CC--CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE
Confidence 4457777777776 4444444 888885 443322211 11 1111222222 4567778888999999987 4432
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...... ...+.++...+++. +.+++.++.|..+|.. ++....+......+.++... .++.++
T Consensus 130 ~~~~~~---------------~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~l~ 191 (330)
T 3hxj_A 130 WRFKTK---------------KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGTIY 191 (330)
T ss_dssp EEEECS---------------SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCCEE
T ss_pred EEEcCC---------------CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCEEE
Confidence 211110 11244556666776 6667778999999998 87777666556667777776 566655
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+ ++ +.+..+| . .+............+.++...+++. +..++.++.+..+|...
T Consensus 192 v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g------------------ 244 (330)
T 3hxj_A 192 F-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG------------------ 244 (330)
T ss_dssp E-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS------------------
T ss_pred E-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC------------------
Confidence 4 44 7788888 3 4444444444446678888888775 55566777888887432
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
..+..+..... ...++...+++ .|..++.+|.|..+|. +++.+..+......+.+
T Consensus 245 -----------------~~~~~~~~~~~------~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~ 299 (330)
T 3hxj_A 245 -----------------TEKWRFKTGKR------IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIAT 299 (330)
T ss_dssp -----------------CEEEEEECSSC------CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred -----------------CEeEEeeCCCC------ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccc
Confidence 11111111110 00122334344 5777888888999995 78877777655667788
Q ss_pred eEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 361 CCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 361 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+...+++. |..++.+|.+++...+...
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CEECTTCC-EEEECTTSCEEEEEC----
T ss_pred eEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 88877776 5557789999988766543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.9e-08 Score=77.59 Aligned_cols=251 Identities=9% Similarity=0.046 Sum_probs=146.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceec
Q 015301 53 SFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTE 127 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~ 127 (409)
.+|+.+.. +.|+.++++..... ...... ....+..++|++++..|..+ ..++.|..++........... .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~--~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI--PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--Q 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE--EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--T
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC--CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--C
Confidence 45555553 47888888765321 111111 12357899999976666555 457899999987654221110 0
Q ss_pred eeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD- 205 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 205 (409)
.......+++++++..|+.+. ..+.|.++++..................++++|.++.++++...
T Consensus 77 -------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 77 -------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp -------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred -------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 011478899999766666554 46789999986543222233223567899999334544444433
Q ss_pred -CCeEEEecccccccCCceeeeee-ccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 206 -DSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 206 -dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
.+.|..+++. +.....+. ........+++++++..|+.+ ...+.|..+|+.....
T Consensus 144 ~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----------------- 201 (267)
T 1npe_A 144 DNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------------- 201 (267)
T ss_dssp SSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-----------------
T ss_pred CCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-----------------
Confidence 4678888753 22222221 223457889999987666554 4567899999864110
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeee
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDC 361 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~ 361 (409)
........ .. ..++.. ++.++++...++.|..+|..+++.+.++.... .....+
T Consensus 202 -----------------~~~~~~~~---~P----~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi 256 (267)
T 1npe_A 202 -----------------RKVLEGLQ---YP----FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (267)
T ss_dssp -----------------EEEEECCC---SE----EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred -----------------EEEecCCC---Cc----eEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccccee
Confidence 00111100 01 122232 34444444456899999999999888886433 246788
Q ss_pred EEecCcC
Q 015301 362 CWHPIYP 368 (409)
Q Consensus 362 ~~s~~~~ 368 (409)
++.|++.
T Consensus 257 ~~~~~~~ 263 (267)
T 1npe_A 257 TIALSQC 263 (267)
T ss_dssp EEECSCC
T ss_pred eecCccC
Confidence 8888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-09 Score=90.04 Aligned_cols=259 Identities=13% Similarity=0.112 Sum_probs=155.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
++....+|. +..++.++.|..|| .+++..... ......+.++...+++..+ +++.+ |..+|. +++......
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEE
Confidence 345555664 56667788899999 776544332 1223356777787777644 44444 888886 444322222
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
.... ......+. +..+.+++.++.|..+|.. ++.......+...+.++... +++. ++.++
T Consensus 95 ~~~~---------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~vgt 154 (330)
T 3hxj_A 95 TKKA---------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IYVGS 154 (330)
T ss_dssp C--------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EEEEC
T ss_pred CCCC---------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EEEEc
Confidence 1110 01112222 4457778888999999988 77776666555556666665 5555 56677
Q ss_pred CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.++.+..+|. . +............+.++...+++.+++ ++ +.|..+| .+..
T Consensus 155 ~~~~l~~~d~----~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-------------------- 205 (330)
T 3hxj_A 155 NDNYLYAINP----D-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT-------------------- 205 (330)
T ss_dssp TTSEEEEECT----T-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC--------------------
T ss_pred CCCEEEEECC----C-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc--------------------
Confidence 8899999994 2 444444444455667777777777554 44 7799998 4421
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
.+..+.... ..+.++..+++|. |.+++.++.|..+| .+++.+..+......+..+...
T Consensus 206 --------------~~~~~~~~~------~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~ 263 (330)
T 3hxj_A 206 --------------EKWNFYAGY------WTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIG 263 (330)
T ss_dssp --------------EEEEECCSS------CCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEEC
T ss_pred --------------EEEEEccCC------cceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEc
Confidence 111111111 1123445566664 55666778888887 4677766666555555666666
Q ss_pred cCcCeEEeecCCCeEEEEec
Q 015301 365 PIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw~~ 384 (409)
+++ .|..++.+|.|..+|.
T Consensus 264 ~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 264 NTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp TTS-CEEEECTTCEEEEECT
T ss_pred CCC-eEEEecCCCCEEEECC
Confidence 555 4566777888999985
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-08 Score=80.51 Aligned_cols=200 Identities=8% Similarity=-0.006 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|++++.++++.+. ++.|.++|+++++.+..+.... .....+++. .+.+.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 578999998754444443 5799999999999988875322 233456665 34455555578999999964 55
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+..... ....+++||+.++++..++.|.++|..+.+.. .
T Consensus 97 ~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----------------------------------~ 140 (266)
T 2iwa_A 97 SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLI----------------------------------K 140 (266)
T ss_dssp EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEE----------------------------------E
T ss_pred cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEE----------------------------------E
Confidence 66665543211 12335567887777777889999998874322 2
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-------------cceeeeEEecCcC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-------------APVRDCCWHPIYP 368 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-------------~~v~~~~~s~~~~ 368 (409)
.+.-.... ........+.+. +|++.+....++.|.+.|..+++.+..+.... ...+.++|+|+++
T Consensus 141 ~I~Vg~~~-~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 141 KHNVKYNG-HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EEECEETT-EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEEECCCC-cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 21111000 000112233444 56666665568899999999999988886321 2458999999987
Q ss_pred -eEEeecCCCeEEEEecCCCc
Q 015301 369 -MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 369 -~l~s~~~dg~i~iw~~~~~~ 388 (409)
+++++...+.|.+-++....
T Consensus 219 ~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 219 RIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCCeEEEEEEeccc
Confidence 66667778899999987653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-07 Score=84.48 Aligned_cols=326 Identities=8% Similarity=0.024 Sum_probs=182.5
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCce-e--ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWK-V--DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-l--~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.++...++|.+.+......+..+-+...... + ..+...|.++...++|.+.+....+| +.+|+..++........
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecC
Confidence 45566666776544322111222222222111 1 12356799998888887555443345 88999877633221111
Q ss_pred c----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 81 T----KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 81 ~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
. .-....|.++...++|.+.+ |+.+ -|.+|+..++............ ..-....|.++...++|.
T Consensus 254 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~--------~~l~~~~i~~i~~D~~g~- 322 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVEN--------GSLSQRSVRSIFMDSQGG- 322 (795)
T ss_dssp TTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTST--------TSCSSSCEEEEEECTTSC-
T ss_pred CCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCC--------CCCCCCcEEEEEEeCCcC-
Confidence 0 11234699999998887665 4444 5888988766543221110000 001123599999998886
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEc------CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIP------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-- 228 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-- 228 (409)
|.+|+.++-|..++..++....... .....|.++... ++++ |..|+.++-|..||.. .........
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~ 396 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQE 396 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC-
T ss_pred EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCC
Confidence 5667777779999876554322111 124568899887 5665 4557777778889853 222211111
Q ss_pred ------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 229 ------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 229 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.....|.++...++++.|..|+.++-|..||..+.... .
T Consensus 397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-----------------------------------~ 441 (795)
T 4a2l_A 397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-----------------------------------N 441 (795)
T ss_dssp -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-----------------------------------E
T ss_pred CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-----------------------------------E
Confidence 12356889988888875666777777999997763211 1
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc------CCcceeeeEEecCcCeEEeecCC
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------HNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+..... ......+.++..+++|.+.+.. .+ -+.+||..+++....... ....|.++...+++.+.+...
T Consensus 442 ~~~~~~-~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-- 516 (795)
T 4a2l_A 442 FNQRNS-QLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-- 516 (795)
T ss_dssp ECTTTS-CCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--
T ss_pred eecCCC-CcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--
Confidence 110000 0000123344455667655544 44 488999877654332211 235789999988888666544
Q ss_pred CeEEEEecCCC
Q 015301 377 CNIVRWEIPGI 387 (409)
Q Consensus 377 g~i~iw~~~~~ 387 (409)
+-|..|+..+.
T Consensus 517 ~Gl~~~~~~~~ 527 (795)
T 4a2l_A 517 EGLSVFKQEGL 527 (795)
T ss_dssp SCEEEEEEETT
T ss_pred CceEEEeCCCC
Confidence 45778876543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-06 Score=82.41 Aligned_cols=285 Identities=7% Similarity=0.061 Sum_probs=169.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec-----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-----KALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
...|.++...++|.+.+ |+.+| |.+|+..++.. ...... .-....|.++...++|.+.+ |+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCC
Confidence 35699999999888555 44455 88999877632 222111 11234699999999887554 666677888887
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--------CCCCC
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--------AHKSD 186 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~ 186 (409)
.+........... . ..-....|.++...++|. |.+|+.++-|..||..+++...... .....
T Consensus 338 ~~~~~~~~~~~~~-~--------~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 338 IRNRFKNIRNIPY-K--------NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp GGGSSEEECCCTT-S--------SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CcccceEEcCCCC-C--------CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 6543221111000 0 001123589999888886 5567777779999988765433221 12357
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|.++... +++++|..|+.++-+..+|.. .+.. ..+. .....|.++...++|.+.+. +.+ .+.+||..
T Consensus 408 v~~i~~d-~~g~~lWigt~~~Gl~~~d~~----~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~ 479 (795)
T 4a2l_A 408 IKAVYVD-EKKSLVYIGTHAGGLSILHRN----SGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPE 479 (795)
T ss_dssp EEEEEEE-TTTTEEEEEETTTEEEEEETT----TCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETT
T ss_pred EEEEEEc-CCCCEEEEEeCcCceeEEeCC----CCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCC
Confidence 8899887 677756677777779999854 2222 2221 13457889988888875554 444 48889876
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
+.... .+.... ........+.++..+++|.+.+.. . +-+..|
T Consensus 480 ~~~~~-----------------------------------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~ 522 (795)
T 4a2l_A 480 QRSFT-----------------------------------TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVF 522 (795)
T ss_dssp TTEEE-----------------------------------ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEE
T ss_pred CCeEE-----------------------------------EccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEE
Confidence 52211 110000 000000123344556677755544 4 458889
Q ss_pred EccCCceEEEec-------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 341 DLVSGAQVAKLD-------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 341 d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|..+++. .+. .....|.++...++|.+.++.. . -|..||..+.
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 9877665 222 1345788999888888665443 3 4777886543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-08 Score=92.65 Aligned_cols=308 Identities=9% Similarity=0.079 Sum_probs=170.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc-------ceE-EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALR-------WTI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~v-~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+........ ..+ ..+++ .+..+++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4567777778899999999987765543211100 000 11122 3567888888999999999998865443
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCC-------------
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHK------------- 184 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~------------- 184 (409)
......... .....++ + .++ .++++.. ++.|..+|.++|+.+..+....
T Consensus 144 ~~~~~~~~~------~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 144 QTTDPAKPY------SITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp ECSCTTSSC------BCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred ccCCCCCcc------eecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 321100000 0000011 1 134 4555543 5899999999999988764211
Q ss_pred ------------------CCeEEEEEeCCCCcEEEEeeCCCe-------------------EEEecccccccCCceeeee
Q 015301 185 ------------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 185 ------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 227 (409)
.....+++. +...+++.++.++. |.-+|.+ +++....+
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~~ 286 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWHY 286 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEEE
T ss_pred cccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeEe
Confidence 011246777 66678888876663 8888864 66665554
Q ss_pred ec--cc-------cceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccc-------ccccccc
Q 015301 228 MG--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR-------WMEYPSY 288 (409)
Q Consensus 228 ~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 288 (409)
.. |. .+.....+..+|+ .++.++.+|.+.++|..+++......... ..|... .+.....
T Consensus 287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECTTTCCEEECTTT
T ss_pred ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--cccccccccccCCccccccc
Confidence 43 21 2222223334565 68889999999999998876543221111 011100 0000000
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE------------------------------------Ee
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT------------------------------------GS 332 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------~~ 332 (409)
. ...+....+.+..... ....++++|+..++++ ..
T Consensus 365 ~-----~~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 365 R-----YEKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp T-----CSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred c-----ccCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 0 0000000000000000 0001234444333332 12
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+|.|..||+.+++.+.+.+.+ .+.....+...+.+++.++.||.|+.||..+++..
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3488999999999998877643 34444556667788999999999999999887653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-08 Score=80.57 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=122.8
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc-----------------cccceEEEEEeCC-CC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK-----------------ALRWTITDTSLSP-DQ 97 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~-~~ 97 (409)
+.+.-....+++++++|+++.++..++.|..|+..++.. ....... .....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 333334567888999999788888889999999876522 2111100 0113578899998 55
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEe--------------
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGS-------------- 162 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-------------- 162 (409)
+ |.++...+.|..+|..++.......... . ........+++.+ +|+..++-..
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~---~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLATSVD---G--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEESEET---T--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEecccCC---C--------CcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 5 5555545568888876554322111100 0 0011367899999 8876555322
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
++.|..+|..+++...... .......++++ ++++.|+.+ ...+.|..|++... .......+....+ ...++
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~--~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGP--KKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEE-EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSST--TTTCEEEEEECSS-EEEEE
T ss_pred cCCCceEEEEeCCCCEEEEecc-CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCC--cCCccceEEeCCC-CCCeE
Confidence 3678999987776433222 12345679999 787755544 56688999997521 1011111111223 67889
Q ss_pred EcCCCCeEEEEeC----------CCcEEEeeC
Q 015301 239 SRRDGRYFISNGK----------DQTTKLWDI 260 (409)
Q Consensus 239 ~~~~~~~l~~~~~----------dg~i~iwd~ 260 (409)
+.++|++.++... .+.|..+|.
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 9999986666544 355666664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-06 Score=71.36 Aligned_cols=233 Identities=7% Similarity=-0.048 Sum_probs=134.2
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCee
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC 176 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~ 176 (409)
.+|+.+.. +.|+.+++................ ....+..++|++++..|+.+.. ++.|..+++.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~----------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI----------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE----------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC----------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc
Confidence 45666553 578888887654321110000000 0114788999997666665554 67999999976654
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeC---C
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK---D 252 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~---d 252 (409)
...+.........+++.|..+.++++-...+.|.++++. +.....+ .........++++|++..|+.+.. .
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 433433335789999994345566666667899999864 1111122 112245688999997665555443 3
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG- 331 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~- 331 (409)
+.|..+++.... ...+... . ......++++++++.|+.+
T Consensus 146 ~~I~~~~~dg~~-----------------------------------~~~~~~~-~----~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 146 PKIETSHMDGTN-----------------------------------RRILAQD-N----LGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp CEEEEEETTSCC-----------------------------------CEEEECT-T----CSCEEEEEEETTTTEEEEEE
T ss_pred cEEEEEecCCCC-----------------------------------cEEEEEC-C----CCCCcEEEEcCCCCEEEEEE
Confidence 577777765311 1111000 0 0122345788876665554
Q ss_pred eCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 332 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
...+.|.++|.........+.. ......++.. .+.++++....+.|.++|..+++
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 4568999999876544333332 2233566654 34444555566899999987654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-07 Score=75.62 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=130.4
Q ss_pred CeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
....++|+|++.++++.+. ++.|.+.|+.+++.+.... ...+. ....+++.. +...++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~-fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSY-FGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTC-CEEEEEEET-TEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCc-ceEEEEEeC-CEEEEEEecCCEEEEEECCCCcE
Confidence 3679999998755555543 5789999999996665533 22211 233455542 34444455788999999988765
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~ 194 (409)
....... .. ....++++|+.++++..++.|.++|.++.+.+..+.... ..++.+.|.
T Consensus 99 ~~~i~~g-~~----------------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 99 IKNFTHQ-MK----------------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEEECC-SS----------------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEECC-CC----------------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 4332221 00 012345578888877778999999999988887775321 246788887
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeE-EEEeCCCcEEEeeC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYF-ISNGKDQTTKLWDI 260 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~ 260 (409)
++.+++....++.|.+.|.. +++....+... ......++|+|+++.+ +++...+.+...++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 56666655568899999965 66666655432 1356899999998755 45556788888888
Q ss_pred CCC
Q 015301 261 RKM 263 (409)
Q Consensus 261 ~~~ 263 (409)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=7.2e-08 Score=88.57 Aligned_cols=165 Identities=10% Similarity=0.103 Sum_probs=96.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCC--CCcEEEEEec------CCEEEEEEcCCCccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESL 122 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~ 122 (409)
+..+++++.|+.|..+|..+++.+......... ...+ .-+| .+..++++.. +|.|..+|..+++....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 567888888999999999999776554332100 0011 1111 1334555543 58999999999886544
Q ss_pred cceeceeeeeee--------ecCCC--------CcceeeEEEEEcCCCCeEEEEEecC-------------------eEE
Q 015301 123 ANVTEIHKGLDF--------SADGD--------EDEFGIFSVKFSTDGQELVAAGSDN-------------------FIY 167 (409)
Q Consensus 123 ~~~~~~~~~~~~--------~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~-------------------~i~ 167 (409)
...........+ .+... ........+++.|+...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 322100000000 00000 0011123467888888888887665 499
Q ss_pred EEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCCc---EEEEeeCCCeEEEecccccccCCcee
Q 015301 168 VYDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 168 v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
.+|..+++.+..++. |. .++....+. .+++ .++.++.+|.++++|.+ +++.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence 999999999887754 22 222222222 2454 68899999999999964 55544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-07 Score=79.05 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=145.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeee----cCCCCcceeeEEEEEcC-CCCeEEEEE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFS----ADGDEDEFGIFSVKFST-DGQELVAAG 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~ 161 (409)
...+++|+++++++.++..++.|..|+..++.................. .........+..+++.+ +++ |+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 3566889999987888888999999988765432111000000000000 00000012478899997 554 55565
Q ss_pred ecCeEEEEECCCCeeeeEE---cC-CCCCeEEEEEeCC-CCcEEEEeeC-----------------CCeEEEeccccccc
Q 015301 162 SDNFIYVYDLQANKCSLRI---PA-HKSDVNTVCFADE-TGHLIFSGSD-----------------DSLCKVWDRRCFIS 219 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~---~~-~~~~v~~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 219 (409)
..+.|..+|..+++..... .+ .......+++. + ++++.++-.. ++.|..+|..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---- 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---- 173 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT----
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC----
Confidence 5566888987765432211 11 12356889998 6 7777766432 3668888742
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.+.. ..+.........++++|+++.|+.+ ...+.|..|++..... .
T Consensus 174 ~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------------------------------~ 220 (322)
T 2fp8_A 174 TKET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------------------------------G 220 (322)
T ss_dssp TTEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------------------------------T
T ss_pred CCEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------------------------------C
Confidence 2222 2222222345679999999866555 5568899999865210 0
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC----------CCeEEEEEccCCceEEEeccCC----cceeeeEEe
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----------DNSVYIYDLVSGAQVAKLDFHN----APVRDCCWH 364 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~----~~v~~~~~s 364 (409)
....+.... . ...++++++|++.++... .+.|..+|. .++.+..+.... ..++.+++
T Consensus 221 ~~~~~~~~~------g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 221 TAEVLVKIP------N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp CEEEEEECS------S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-
T ss_pred ccceEEeCC------C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-
Confidence 001111000 0 123467788887766544 467888886 577777765432 34666766
Q ss_pred cCcCeEEeecCCCeEEEEecCCC
Q 015301 365 PIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+++++++...++.|.++++...
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC---
T ss_pred eCCEEEEeecCCCceEEEecccc
Confidence 46666666667889999998643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=94.74 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=75.7
Q ss_pred EEEECC-CCCEEEEEeCCC-----------cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEE
Q 015301 45 TSQFSN-DGSFFVAASQES-----------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNI 111 (409)
Q Consensus 45 ~~~~s~-~~~~l~t~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~ 111 (409)
++++.| +|++++.|+.+. .+.+||..++.-.........+.....++++.++++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 5889998877322111111111112334677889999999984 458999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ec-----CeEEEEECCCCeeee
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SD-----NFIYVYDLQANKCSL 178 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~~~~~ 178 (409)
||..+.+......+... ..-.+++..++++.++.|+ .+ ..+.+||..+++...
T Consensus 270 yd~~t~~W~~~~~~~~~--------------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA--------------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEGGGTEEEECCCCSSC--------------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ecCcCCceeECCCCCcc--------------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 99987654433221111 0123455667899999988 33 579999998876443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-08 Score=85.47 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred EEEECC-----CCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEe-C-CCCcEEEEEe------------
Q 015301 45 TSQFSN-----DGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSL-S-PDQRFLVYAS------------ 104 (409)
Q Consensus 45 ~~~~s~-----~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------ 104 (409)
....|. ||++|..... +..|.+.|+++.+....+ .... ...+..+++ + |+++++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 355555 8888877655 567999999998655533 2221 125788887 5 9999998884
Q ss_pred ------cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--------------
Q 015301 105 ------ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-------------- 164 (409)
Q Consensus 105 ------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------- 164 (409)
.++.+.+.|..+.+......... ....++++|+|+++++.+.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC----------------CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 34578899998765543333211 123466788888877776432
Q ss_pred ------------------------eEEEEECCC--Cee-eeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccc
Q 015301 165 ------------------------FIYVYDLQA--NKC-SLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRC 216 (409)
Q Consensus 165 ------------------------~i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 216 (409)
.|.+.|..+ ++. +..++. .....++.++ |+++++++++ .+.+|.++|+..
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGG
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECcc
Confidence 477778776 444 444543 2355788999 7888666554 678999999763
Q ss_pred ccc--------CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 217 FIS--------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 217 ~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
... ........ .-......++|+|+|...++...|+.|.+||+..
T Consensus 309 ~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 210 00112222 2234578899999995445566799999999875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-07 Score=84.52 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=114.1
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeeeccccc--------ceEEEEEeCCCCcE----EEEEecCCEEEEEEcCCC
Q 015301 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR--------WTITDTSLSPDQRF----LVYASICAIVNIVDVGSS 117 (409)
Q Consensus 52 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~----l~~~~~dg~i~~w~~~~~ 117 (409)
+..+++++. ++.|.-+|. .+++.+.+........ .....++++|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 455666666 788999999 8886665543221100 00122445443444 788888999999999998
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC----
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD---- 186 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~---- 186 (409)
+............. ..+.+ ..+ .++ .+++++. ++.|+.+|.++|+.+.++......
T Consensus 142 ~~~W~~~~~~~~~~-----------~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVG-----------STLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGT-----------CBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCcc-----------ceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 86543332210000 00110 011 144 4555543 789999999999988776432111
Q ss_pred ---------------------------------e-EEEEEeCCCCcEEEEeeCC----------------CeEEEecccc
Q 015301 187 ---------------------------------V-NTVCFADETGHLIFSGSDD----------------SLCKVWDRRC 216 (409)
Q Consensus 187 ---------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~ 216 (409)
+ ..+++. +...+++.+..+ +.|.-+|.+
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 0 134555 455667766654 378888864
Q ss_pred cccCCceeeeeeccc----------cceeEEEEc-CCC---CeEEEEeCCCcEEEeeCCCCccccc
Q 015301 217 FISKGRANGVLMGHL----------EGITFIDSR-RDG---RYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+++..-.+.... .++. +... .+| ..++.++.+|.+.++|.++++....
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 555554443321 1121 2222 467 4677788999999999988765443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-07 Score=83.96 Aligned_cols=311 Identities=10% Similarity=0.037 Sum_probs=163.0
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeeeccccc-c------e-EEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR-W------T-ITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 52 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~-~------~-v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
+..+++++. ++.|.-+|. .+++.+.+........ . . -..++. .+..+++++.|+.+..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 8886665532211100 0 0 011122 35678888889999999999987654
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC---------
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD--------- 186 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~--------- 186 (409)
........... .....++ .. ++ .+++++. ++.|..+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~------~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 140 EVEVCDPKVGS------TLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EEECCCGGGTC------BCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EecCCCCCccc------eeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 33322110000 0000011 11 34 4556654 689999999999988776432110
Q ss_pred -----------------------------eEEEEEeCCCCcEEEEeeCC----------------CeEEEecccccccCC
Q 015301 187 -----------------------------VNTVCFADETGHLIFSGSDD----------------SLCKVWDRRCFISKG 221 (409)
Q Consensus 187 -----------------------------v~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~ 221 (409)
...+++. +....++.++.+ +.|..+|.+ ++
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----tG 282 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----TG 282 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----TC
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----CC
Confidence 0135566 444556555432 358888864 55
Q ss_pred ceeeeeecc----------ccceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 222 RANGVLMGH----------LEGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 222 ~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
+........ ..++. +....+|+ .++.++.+|.+.++|..+++.......... ..|... +... .
T Consensus 283 ~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~~-~d~~-~ 358 (571)
T 2ad6_A 283 MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFKK-VDLK-T 358 (571)
T ss_dssp CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEEE-ECTT-T
T ss_pred cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-cccccc-cccc-C
Confidence 555444321 12221 22224674 567788899999999988665433221100 000000 0000 0
Q ss_pred ceeccc------cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe------------------------------
Q 015301 289 ARRLKH------PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS------------------------------ 332 (409)
Q Consensus 289 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~------------------------------ 332 (409)
...+.. +.........+.... .....++++|+..+|++..
T Consensus 359 g~p~~~~~~~~~~~~~~~~~~P~~~Gg----~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 359 GTPVRDPEFATRMDHKGTNICPSAMGF----HNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CSEEECGGGCCCTTCCEEEESSCTTCS----SCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred CceecccccCCCCCCCceEECCCCccc----cCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 000000 000000000000000 0001234555555555442
Q ss_pred -------CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 333 -------SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 333 -------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+|.|..||..+++.+.++... ..+........+..++.++.||.|+.||..+++..
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3588999999999998887632 33444444445667777899999999999887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-06 Score=77.86 Aligned_cols=283 Identities=9% Similarity=-0.025 Sum_probs=162.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee------ecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI------ETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
...|.++...++|. |..|+.++-|..++........... ...-....|.++...+++.+. +|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 46799999999887 4556655668888876542211100 011123469999998887755 466566688888
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVC 191 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~ 191 (409)
..++......... ......|.++...+++. |.+|+.++-+..+|..+++...... .....|.++.
T Consensus 390 ~~~~~~~~~~~~~------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 390 NGKRVAIYNKENR------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY 456 (781)
T ss_dssp TTEEEEECC-----------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE
T ss_pred CCCCeEEEccCCC------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE
Confidence 7655432211000 01123588998887776 5557666679999987776433221 2346788888
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
.. +++.+ ..|+. +-+..+|.. .......... ....|.++...++|.+.+ ++.++-|..||..+..
T Consensus 457 ~d-~~g~l-wigt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-- 526 (781)
T 3v9f_A 457 ED-KNKKI-WIGTH-AGVFVIDLA----SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL-- 526 (781)
T ss_dssp EC-TTSEE-EEEET-TEEEEEESS----SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE--
T ss_pred EC-CCCCE-EEEEC-CceEEEeCC----CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe--
Confidence 87 56654 44555 558888854 2222111111 135688998888887554 5553447888875521
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+...... ....+.++..+++|.+.++ +.+|.|..||..+++
T Consensus 527 ---------------------------------~~~~~~~~~l--~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 527 ---------------------------------VRKFNQYEGF--CSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp ---------------------------------EEEECTTTTC--SCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred ---------------------------------EEEccCCCCC--CCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 1111110000 0112334455666775544 447765888887665
Q ss_pred eEEEecc----CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.. .+.. ....|.++...++|.+.+++ .+| |..++..+
T Consensus 571 ~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 571 YQ-VFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp CE-EECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred EE-EccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence 32 3321 12467888888888766654 445 66666554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-06 Score=68.10 Aligned_cols=210 Identities=10% Similarity=0.142 Sum_probs=132.9
Q ss_pred eeecCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.+.|-.+.+..++|+|+++.|+ +...++.|...|.. +..+. .....+. .....+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~-~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR-TIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE-EEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE-EEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3445557899999999876555 56677888888887 43333 3333322 3578889999988777766778899998
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---CCeeeeEE-------cCC
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRI-------PAH 183 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~-------~~~ 183 (409)
+........... ..+.............++|+|.++.|+++.......+|.+. ....+..+ ..+
T Consensus 98 v~~~~~i~~~~~------~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 98 LTPNSEVKILKK------IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp ECTTCCEEEEEE------EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cCCCCeeeeeee------eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 876542111110 00100011223457899999999888887775555555543 11112222 123
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---------ccceeEEEEcCCCCeEEEEeCCCc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------LEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
...+.+++++|..+++++.......+.++|.. +.....+.-. -.....|+|.++|++.++ ++.+.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR 245 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce
Confidence 44678999998888888888889999999963 3333333221 125689999999985554 66665
Q ss_pred EEEee
Q 015301 255 TKLWD 259 (409)
Q Consensus 255 i~iwd 259 (409)
+..+.
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-07 Score=73.27 Aligned_cols=185 Identities=13% Similarity=0.076 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... -..++.. ++.+.+..-.++.+.+||.. +.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----NL 117 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----TC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECc----cC
Confidence 5678888 666666777655 8999999999998888643322 2335554 34444455568999999964 66
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.... ....++++++.|+.+..++.|.++|..+.+.. .
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~----------------------------------~ 160 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV----------------------------------R 160 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEE----------------------------------E
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEE----------------------------------E
Confidence 6666665432 22233456777777776788999998874322 1
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC------------CcceeeeEEecCcCe
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH------------NAPVRDCCWHPIYPM 369 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~ 369 (409)
.+.-....... .....+.+. +|++.+..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.
T Consensus 161 ~I~V~~~g~~~-~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 161 TITVTAHGEEL-PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EEECEETTEEC-CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEEeccCCccc-cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 11111000000 000012233 5766666667889999999999998887532 124588999999886
Q ss_pred EEeecC
Q 015301 370 LISSSW 375 (409)
Q Consensus 370 l~s~~~ 375 (409)
|+..+.
T Consensus 239 lfVTGK 244 (262)
T 3nol_A 239 LFVTGK 244 (262)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 666654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-05 Score=74.23 Aligned_cols=280 Identities=9% Similarity=0.037 Sum_probs=157.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
...|.++...++|.+. .|+.++-|..|+..++.. ..... .......|.++...+++.+.+ |+.++.+..++..+++
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK 438 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc
Confidence 3569999999888754 455455588898765421 11110 111234699999888887655 6666778888887665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFA 193 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~ 193 (409)
....... ......|.++...+++. |..|+. +-|..+|..+++........ ...|.++...
T Consensus 439 ~~~~~~~-------------~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 439 FQIIELE-------------KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp EEECCST-------------TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred EEEeccC-------------CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 4322110 01122588888888876 455555 56999998876654332222 4678899887
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+++.+.+ |+.++-+..+|.. ... ...+.. ....|.++...++|.+.+ ++.+|-+..||..+..
T Consensus 504 -~~g~lWi-gt~~~Gl~~~~~~----~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~----- 570 (781)
T 3v9f_A 504 -SEGRFWI-GTFGGGVGIYTPD----MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD----- 570 (781)
T ss_dssp -TTCCEEE-EESSSCEEEECTT----CCE-EEEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC-----
T ss_pred -CCCCEEE-EEcCCCEEEEeCC----CCe-EEEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc-----
Confidence 6666554 4443347778853 222 222211 235688888888887555 4446654888876522
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+..+....... ...+.++..+++|.+.++ +.+| |..|+..+.+. .
T Consensus 571 ------------------------------~~~~~~~~gl~--~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~ 615 (781)
T 3v9f_A 571 ------------------------------YQVFQRKEGLP--NTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCF-Y 615 (781)
T ss_dssp ------------------------------CEEECGGGTCS--CCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEE-E
T ss_pred ------------------------------EEEccccCCCC--CceEEEEEECCCCCEEEE-cCCc-eEEEECCCCce-E
Confidence 11111111000 001123345556765544 4555 77788765543 3
Q ss_pred EeccCCc------ceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 350 KLDFHNA------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 350 ~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+....+ ...++...++|.+++ |+.+| +..++....
T Consensus 616 ~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 616 TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDIA 657 (781)
T ss_dssp EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCCG
T ss_pred EecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChhhc
Confidence 3322111 124566677777555 55667 556665543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-06 Score=72.03 Aligned_cols=227 Identities=7% Similarity=-0.023 Sum_probs=132.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--C
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--N 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~ 164 (409)
....++|+++++.+++-..++.|..||....... .... ...+..+++.++|+++++.... .
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~----------------~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HATV----------------EGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EEEC----------------SSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceEE-EEeC----------------CCCceeEEEcCCCcEEEEeccCCcc
Confidence 5778999999987776667899999987653211 1100 1147889999999855544332 2
Q ss_pred eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc-eee---------eeeccccc
Q 015301 165 FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-ANG---------VLMGHLEG 233 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---------~~~~~~~~ 233 (409)
.|..+|..+++...... ........++.. +++..+++-..++.|..+|.. .+. .+. ........
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSCS
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCCc
Confidence 47777877776543322 122334555554 455555555568888888853 111 110 00011123
Q ss_pred eeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 234 ITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
...+ +++++.|+.+ ...+.|..+++...... .....+...
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-------------------------------~~~~~~~~~------ 211 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-------------------------------GEPEIFVEQ------ 211 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-------------------------------CCCEEEEES------
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-------------------------------CccEEEecc------
Confidence 3445 7788766554 45678999998641000 000000000
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE--EEeccCCcceeeeEEe---cCcCeEEeecCC
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--AKLDFHNAPVRDCCWH---PIYPMLISSSWD 376 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 376 (409)
.....++++++|+++++....+.|.++|.. ++.. ..+.......++++|. |+++.|+.++..
T Consensus 212 -~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 -TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 011234678889887777778899999974 6553 2344333568899998 887766655443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-06 Score=75.42 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=91.9
Q ss_pred EEECCCCCE----EEEEeCCCcEEEEEcCCCeeeeeeeeccc-ccceEEE-EEeCCCCcEEEEEe------cCCEEEEEE
Q 015301 46 SQFSNDGSF----FVAASQESNIKVYNVDKNWKIQKDIETKA-LRWTITD-TSLSPDQRFLVYAS------ICAIVNIVD 113 (409)
Q Consensus 46 ~~~s~~~~~----l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~~~~~l~~~~------~dg~i~~w~ 113 (409)
++++|.+.. +++++.|+.+.-+|..+++.+.+...... ....+.+ .... ++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 78888899999999999976655332110 0001110 0111 34 455554 378999999
Q ss_pred cCCCccccccceeceeeeeeeecC-----------------CCC----c-ceee-EEEEEcCCCCeEEEEEec-------
Q 015301 114 VGSSARESLANVTEIHKGLDFSAD-----------------GDE----D-EFGI-FSVKFSTDGQELVAAGSD------- 163 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~----~-~~~v-~~~~~~~~~~~l~~~~~d------- 163 (409)
..+++..-............+.+. ..+ + ...+ ..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 999876543332211100000000 000 0 0001 134566667777777654
Q ss_pred ---------CeEEEEECCCCeeeeEEcCCCC----------CeEEEEEeCCCC---cEEEEeeCCCeEEEeccc
Q 015301 164 ---------NFIYVYDLQANKCSLRIPAHKS----------DVNTVCFADETG---HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 164 ---------~~i~v~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 215 (409)
+.|..+|.++++.+..++.... ++. +.....++ ..++.++.+|.+.++|.+
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 3899999999999877754221 121 22211345 567788899999999965
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-07 Score=73.57 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=119.7
Q ss_pred eEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 43 VYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
...+.|+ ++.++.+.+.+| .|+++|+++++.+.... ..... --..+++. +..|. ..-.++.+.++|..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~-FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRY-FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCcc-ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 4788998 677677777766 89999999996665543 22211 11224443 44444 445688999999998876
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC--C---CCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH--K---SDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~ 194 (409)
........ ....++++++.|+.+..++.|.++|.++.+.+..+... . ..++.+.|.
T Consensus 120 ~~ti~~~~------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 120 VRSFNYDG------------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp EEEEECSS------------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEECCC------------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 54433211 11223357777777766788999999999888876532 1 345568886
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeecc------------ccceeEEEEcCCCCeEEEEeCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------------LEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d 252 (409)
++.+.+..-.++.|.+.|.+ +++....+... ....+.|+++|+++.|++.+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 56666666678899999965 55555554321 2356899999998888777654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-06 Score=77.30 Aligned_cols=303 Identities=8% Similarity=-0.037 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEec------CCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.|+.+..+|..+++.+.+..... +... ..+.-+| .+..+++++. ++.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5567788889999999999997665533211 1000 0011112 1334555554 789999999998765433
Q ss_pred ceeceeeeeeeec-----------------CCC------CcceeeEEEEEcCCCCeEEEEEec----------------C
Q 015301 124 NVTEIHKGLDFSA-----------------DGD------EDEFGIFSVKFSTDGQELVAAGSD----------------N 164 (409)
Q Consensus 124 ~~~~~~~~~~~~~-----------------~~~------~~~~~v~~~~~~~~~~~l~~~~~d----------------~ 164 (409)
............+ ... +....-..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 2211100000000 000 000001235566666666666532 3
Q ss_pred eEEEEECCCCeeeeEEcCC--CC----CeEE---EEEeCCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccc-
Q 015301 165 FIYVYDLQANKCSLRIPAH--KS----DVNT---VCFADETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL- 231 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~--~~----~v~~---~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 231 (409)
.|..+|.++++.+..++.. .. .+.. +... .++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPA 347 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTT
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecc-cCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCC
Confidence 6999999999988877532 11 1111 2221 355 367788899999999964 444443322110
Q ss_pred ------------cce--------------------------eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 232 ------------EGI--------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 232 ------------~~v--------------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
.++ ..++++|+..++++...+....++........... .
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~---~ 424 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF---F 424 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC---C
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc---c
Confidence 011 23567888788877766544444433221000000 0
Q ss_pred cccccccccc------cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 274 RDYDWDYRWM------EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 274 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
....+..... ........+....++.+-.+..... .....+...+..++.++.||.|+.+|.++++.
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 0000000000 0000011111111222222211110 01111222366788899999999999999999
Q ss_pred EEEeccCCcc-eeeeEEecCcCeEE
Q 015301 348 VAKLDFHNAP-VRDCCWHPIYPMLI 371 (409)
Q Consensus 348 ~~~~~~~~~~-v~~~~~s~~~~~l~ 371 (409)
+.+++..... -.-+.+..+++.++
T Consensus 498 lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEeCCCCcEeeeEEEEECCEEEE
Confidence 9888743321 12234557777433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.2e-06 Score=73.88 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|.|.-||+.+++.+.+.... .++..-.....+.+++.++.||.|+.||..++++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 688999999999988777643 23333233334667888999999999999888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-07 Score=72.43 Aligned_cols=182 Identities=9% Similarity=-0.015 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe--EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ .. ... ..+++. .+.+.+..-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECC----cCc
Confidence 4667776 4566677777889999999999988877 32 233 346654 44555556678999999964 666
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.+..+..... -..++ ++++.|+.+..++.|.++|..+.+... .
T Consensus 128 ~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~----------------------------------~ 170 (268)
T 3nok_A 128 RERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVG----------------------------------A 170 (268)
T ss_dssp EEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEE----------------------------------E
T ss_pred EEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEE----------------------------------E
Confidence 6666654322 23444 567888877778899999988743222 1
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-------------CcceeeeEEecCcCe
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYPM 369 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~ 369 (409)
+.-....... .....+.+. +|++.+....+..|.+.|..+++.+..+... ..-.+.|+|+|+++.
T Consensus 171 I~V~~~g~~v-~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 171 VQVKLRGQPV-ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECEETTEEC-CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCCccc-ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 1111100000 001112233 5766666657889999999999998887532 135688999998775
Q ss_pred EEeec
Q 015301 370 LISSS 374 (409)
Q Consensus 370 l~s~~ 374 (409)
|+..+
T Consensus 249 lfVTG 253 (268)
T 3nok_A 249 IFMTG 253 (268)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 55554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-06 Score=70.14 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-C-EEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-A-IVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-~i~~w~~~~~~ 118 (409)
.....++|+++|+++++-..++.|..||.+... ....... ..+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 457789999999977776678899999987642 2222222 368899999999866554332 2 46667766665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEE---------cCCCCCeE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRI---------PAHKSDVN 188 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~---------~~~~~~v~ 188 (409)
......... ......++..+++..+++-..++.|+.+|..+++. +... ...-....
T Consensus 107 ~~~~~~~~~--------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 107 VETLLTLPD--------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEEECTT--------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EEEEEeCCC--------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 432211100 00123344455554444433478999999876532 1111 01112345
Q ss_pred EEEEeCCCCc-EEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 189 TVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 189 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+ + +++. ++++-...+.|..+++.. .+.. ...+. .......++++++|+++++....+.|.++|..
T Consensus 173 gi--s-~dg~~lyv~d~~~~~I~~~~~~~---~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 173 GL--K-RFGNFLYVSNTEKMLLLRIPVDS---TDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EE--E-EETTEEEEEETTTTEEEEEEBCT---TSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred Cc--C-cCCCEEEEEeCCCCEEEEEEeCC---CCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 55 5 4555 445555678999999752 1111 11111 11345678899999877776677889999854
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-05 Score=72.64 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=89.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc------ccceEEEEEeC-CCCc-EEEEEe------cCCEEEEEEcCCC
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKA------LRWTITDTSLS-PDQR-FLVYAS------ICAIVNIVDVGSS 117 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~------~~~~v~~~~~s-~~~~-~l~~~~------~dg~i~~w~~~~~ 117 (409)
+..++.++.|+.|.-+|..+++.+........ ...++ +.=. .+++ .+++++ .++.|..+|..++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 45677888899999999999976655432211 01111 1100 1233 555554 2789999999988
Q ss_pred ccccccceeceee----eeeeec---CC------C-------------CcceeeEEEEEcCCCCeEEEEEe---------
Q 015301 118 ARESLANVTEIHK----GLDFSA---DG------D-------------EDEFGIFSVKFSTDGQELVAAGS--------- 162 (409)
Q Consensus 118 ~~~~~~~~~~~~~----~~~~~~---~~------~-------------~~~~~v~~~~~~~~~~~l~~~~~--------- 162 (409)
+..-......... ...... .. . .....-..+++.|+..+++++..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 7654322110000 000000 00 0 00000123567777777776663
Q ss_pred -----------c----CeEEEEECCCCeeeeEEcC--CCC----CeEE---EEEeCCCC---cEEEEeeCCCeEEEeccc
Q 015301 163 -----------D----NFIYVYDLQANKCSLRIPA--HKS----DVNT---VCFADETG---HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 163 -----------d----~~i~v~d~~~~~~~~~~~~--~~~----~v~~---~~~~~~~~---~~l~~~~~dg~i~iwd~~ 215 (409)
| +.|..+|..+++.+..++. |.. .+.. +.....++ ..++.++.+|.++++|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999999887753 321 1111 12110245 478889999999999964
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-05 Score=66.36 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~ 119 (409)
+..+|.+..++. +|+.+. ...|+..+++... ........ ..+..++|++.+..|..+ ...+.|..+++.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-YTLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCC-EEEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCe-eEEeecCC---CceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 445677777744 444443 3458888877652 22222222 247899999876666655 4678899999876543
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
....... ......+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.++.
T Consensus 108 ~~~~~~~---------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 108 EEVVSTG---------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp EEEECSS---------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred eEEEeCC---------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 2211100 0135678888755555444 44678999998754433333334466799999955666
Q ss_pred EEEEeeCC-CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 199 LIFSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 199 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
++++-... +.|..+++. +.....+ .........++++|++..|..+. ..+.|..+|+..
T Consensus 173 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 66665555 788888853 2222222 22234568899998766665554 467888888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-07 Score=70.16 Aligned_cols=181 Identities=11% Similarity=0.052 Sum_probs=121.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
....+.|+ ++.++.+.+.+|.|+++|+++++.+... .... ..-..+++.. ++..+..-.++.+.+||..+.+...
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 34688887 4566777888889999999999766665 2221 1123355543 3444445578999999999887654
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC--C---CCeEEEEEeCCC
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH--K---SDVNTVCFADET 196 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~ 196 (409)
...... .-..++ ++++.|+.+..++.|.++|.++.+.+.++... . ..++.+.|. +
T Consensus 131 ti~~~~----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d 190 (268)
T 3nok_A 131 TTRYSG----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N 190 (268)
T ss_dssp EEECSS----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred EEeCCC----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence 433211 012333 46778887777899999999999988877532 1 245778886 6
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeEEEEeC
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 251 (409)
+.+++....+..|.+.|.+ +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6666666578899999965 56655554322 135689999998776666554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-06 Score=66.46 Aligned_cols=185 Identities=14% Similarity=0.043 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCeEEEEEec--CeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|++ +.++.+.+.+ ..|+.+|+++++.+..+...... -..++.. ++.+....-.++.+.+||.. +.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----tl 95 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----TL 95 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----cC
Confidence 66788876 5555555554 48999999999998887643322 2345554 35555556678999999964 66
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.....+ ..++ +++..|+.+..++.|.++|..+.+...
T Consensus 96 ~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~---------------------------------- 138 (243)
T 3mbr_X 96 TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVG---------------------------------- 138 (243)
T ss_dssp EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEE----------------------------------
T ss_pred cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEE----------------------------------
Confidence 666666543322 3444 567777777778899999988743322
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-------------CcceeeeEEecCcC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYP 368 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~ 368 (409)
.+.-....... .....+.+. +|++.+....+..|.+.|..+++.+..+... ....+.|+++|+++
T Consensus 139 ~I~V~~~g~~~-~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 139 SIKVTAGGRPL-DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp EEECEETTEEC-CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred EEEEccCCccc-ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 11111000000 001111222 5666666656789999999999998887521 12468899999877
Q ss_pred eEEeecC
Q 015301 369 MLISSSW 375 (409)
Q Consensus 369 ~l~s~~~ 375 (409)
.|+..+.
T Consensus 217 ~lfVTGK 223 (243)
T 3mbr_X 217 RLFVTGK 223 (243)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 5555543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=87.19 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=112.9
Q ss_pred CeEEEEEC-CCCCEEEEEeC-C----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEE
Q 015301 42 RVYTSQFS-NDGSFFVAASQ-E----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIV 109 (409)
Q Consensus 42 ~v~~~~~s-~~~~~l~t~~~-d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 109 (409)
.+...+|| |||++||.+.. + ..|+++|++++ +.+.... ......++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 68889999 99998885533 2 25999999987 5322111 1123468899999988887765 368
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCC--ee--eeEEcC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQAN--KC--SLRIPA 182 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~--~~--~~~~~~ 182 (409)
.++++.++.......... . .......+.|+|||++|+.... ...|+++|+.++ +. ......
T Consensus 250 ~~~~lgt~~~~~~lv~~~---------~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 317 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE---------H---NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR 317 (751)
T ss_dssp EEEETTSCGGGCEEEEEC---------C---CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC
T ss_pred EEEECCCCchhcEEEEec---------C---CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC
Confidence 888887654321111100 0 0112467899999999887764 347889999875 22 222233
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCC--C--eEEEecccccccCCceeee-eecccc--ceeEEEEcCCCCeEEEEeCCCc-
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDD--S--LCKVWDRRCFISKGRANGV-LMGHLE--GITFIDSRRDGRYFISNGKDQT- 254 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~- 254 (409)
.......+.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 318 ~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~ 391 (751)
T 2xe4_A 318 EKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLT 391 (751)
T ss_dssp CTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEE
T ss_pred CCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEE
Confidence 44555666665 445555555443 3 45555642 1112222 223333 34455554 2334555566775
Q ss_pred -EEEeeC
Q 015301 255 -TKLWDI 260 (409)
Q Consensus 255 -i~iwd~ 260 (409)
|.++|+
T Consensus 392 ~l~~~dl 398 (751)
T 2xe4_A 392 RIWTMMA 398 (751)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 455554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-06 Score=72.65 Aligned_cols=155 Identities=7% Similarity=0.070 Sum_probs=95.2
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----C-EEEEEEc
Q 015301 41 SRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----A-IVNIVDV 114 (409)
Q Consensus 41 ~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g-~i~~w~~ 114 (409)
.....++++| ++..|..+...+.|+.+|++.+. +..... .......++|+++++.|+++... . .+..++.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 3567899998 45566666555789999988763 333222 22358899999999977666542 1 3333333
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCF 192 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~ 192 (409)
.+.......... ......++++| ++.++++-..++.|..++...+....... ........++|
T Consensus 213 -~g~~~~~~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 213 -ESGFKVITELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp -GGTSCSEEEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred -CCceeeeeeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 222211100000 01356788999 66655554457899999998766422222 12245689999
Q ss_pred eCCCCc-EEEEeeCCCeEEEeccc
Q 015301 193 ADETGH-LIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 193 ~~~~~~-~l~~~~~dg~i~iwd~~ 215 (409)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 9 7888 45555567889998864
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-05 Score=64.72 Aligned_cols=280 Identities=8% Similarity=0.020 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
..+.+|.|.+++..++++ .+|.| +...+.++....... .......+.++.|.+ +..++ ++..+.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 479999998888877754 56654 344444433322211 111234688999986 44444 455665433 2332322
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCc
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
-....... .....+..+.+.+++..++++ .++.|..- ...++ ...........+..+++. +++.
T Consensus 111 W~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~~~ 175 (327)
T 2xbg_A 111 WSQIPLDP------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PSGE 175 (327)
T ss_dssp CEECCCCT------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TTSC
T ss_pred ceECcccc------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CCCc
Confidence 11111000 011135667776677655554 45554322 12232 222223455678899998 6677
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+++++...+..+-.|-. ....... -......+..+.+.++++.+ .++.+|.+.+.+.....
T Consensus 176 ~~~~g~~G~~~~S~d~g--G~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~-------------- 236 (327)
T 2xbg_A 176 YVAVSSRGSFYSTWEPG--QTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE-------------- 236 (327)
T ss_dssp EEEEETTSSEEEEECTT--CSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE--------------
T ss_pred EEEEECCCcEEEEeCCC--CCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC--------------
Confidence 77666544444444410 0111222 12344577888899888755 45567777665321100
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---CC
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HN 355 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~ 355 (409)
.-..+....... ...++.+.+.+++.+++++. +|.| ++....++.-..+.. ..
T Consensus 237 --------------------tW~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~ 292 (327)
T 2xbg_A 237 --------------------NWGELLSPLRRN--SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVP 292 (327)
T ss_dssp --------------------EECCCBCTTSSC--CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSS
T ss_pred --------------------eeEeccCCcccC--CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCC
Confidence 000000000000 00123445666677666654 6666 344555655444442 34
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.++.|.+++. ++.++.+|.|..++-
T Consensus 293 ~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 293 SNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 5688899976554 556667898877764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-06 Score=64.55 Aligned_cols=184 Identities=10% Similarity=0.056 Sum_probs=119.8
Q ss_pred CCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
.....+.|++ +.++.+.+.+ ..|+.+|+++++.+.... ..... .-..+++. .++..+..-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPY-FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTC-CEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCc-ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 4466889986 5666666665 489999999996665542 22211 11233443 23444455678999999999877
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFA 193 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~ 193 (409)
......... .-..++ ++++.|+.+..++.|.++|.++.+.+.++.... ..++.+.|.
T Consensus 97 ~~~ti~~~~----------------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 97 PRARFRYPG----------------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp EEEEEECSS----------------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEEeCCC----------------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 654433221 112333 467777777778999999999998888775321 355677776
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeEEEEeCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~d 252 (409)
++.+++....+..|.+.|.+ +++.+..+... ..-.+.|+++|+++.|++.+.-
T Consensus 159 --~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 66666666568899999965 55555544311 2356899999988877776643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-06 Score=72.43 Aligned_cols=154 Identities=9% Similarity=0.058 Sum_probs=95.7
Q ss_pred eEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 87 TITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
....++++| ++..|.++...+.|+.+|+.++........ ......++|++++++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------------~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------------LSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------------CSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------------CCCcceEEEeCCCCEEEEEeCCCC
Confidence 467889998 466676666558899999877654322210 1147889999999977776542
Q ss_pred --C-eEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEE
Q 015301 164 --N-FIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFI 237 (409)
Q Consensus 164 --~-~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~ 237 (409)
. .+..++. .+... ..+. .......++++|.++.++++-..++.|..++.. ......... ........+
T Consensus 202 ~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~gi 275 (430)
T 3tc9_A 202 NDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFHI 275 (430)
T ss_dssp TTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEEE
T ss_pred cccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCcceeE
Confidence 1 3444443 33222 2222 123457788984377777777778899999964 222211111 112346789
Q ss_pred EEcCCCCeEE-EEeCCCcEEEeeCCC
Q 015301 238 DSRRDGRYFI-SNGKDQTTKLWDIRK 262 (409)
Q Consensus 238 ~~~~~~~~l~-~~~~dg~i~iwd~~~ 262 (409)
+++|++++|+ +-...+.|..++...
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999999554 445577899887653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-05 Score=66.89 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=143.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARES 121 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~ 121 (409)
-.|.+..+. .+|+.+. ...|+..+++.... ....... ..+..++|++.+..|..+ ...+.|..++........
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~-~~~~~~~---~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEY-TLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCC-EEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcE-EEEecCC---CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 445555553 3444443 35688888876532 2222222 257899999866655555 467889999987654322
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..... ......+++.+.+..|+.+ ...+.|.+.++........+.........+++.|.++.++
T Consensus 153 ~~~~~---------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 153 VVSTG---------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp EECSS---------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEeCC---------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEE
Confidence 11100 0124568888755555444 4467888888865443333444446779999995555555
Q ss_pred EEeeCC-CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccc
Q 015301 201 FSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 201 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
++-... +.|..+++. +.....+ .........++++|++..|..+ ...+.|..+|+.....
T Consensus 218 ~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------ 280 (386)
T 3v65_B 218 WTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------ 280 (386)
T ss_dssp EEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------
T ss_pred EeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------
Confidence 555445 778888753 2222222 2223456889999876655554 4467788888754110
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcc
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 357 (409)
...+... . .....+++. .+.++++-...+.|..++..+++.+..+......
T Consensus 281 ----------------------~~~~~~~--~----~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~ 331 (386)
T 3v65_B 281 ----------------------KAVISQG--L----PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHF 331 (386)
T ss_dssp ----------------------EEEECSS--C----SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSC
T ss_pred ----------------------EEEEECC--C----CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCC
Confidence 0000000 0 011222332 3455666667788998887777766666543334
Q ss_pred eeeeEE
Q 015301 358 VRDCCW 363 (409)
Q Consensus 358 v~~~~~ 363 (409)
...+++
T Consensus 332 p~gi~v 337 (386)
T 3v65_B 332 PMDIHT 337 (386)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 445544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-05 Score=67.04 Aligned_cols=206 Identities=7% Similarity=-0.037 Sum_probs=122.5
Q ss_pred eeecCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w 112 (409)
.+......+..++|++.+..|. +-...+.|..++.+.... ...... + ......+++.+.+..|. +-...+.|.+.
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~-~-~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVST-G-LESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECS-S-CSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeC-C-CCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 3333445688999997665554 444568899999876632 222111 1 11356688887555554 44556788888
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c-CeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+++......... . .......+++.|.+..|+.+.. . +.|..+++............-.....+
T Consensus 187 ~~dg~~~~~l~~--~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 251 (386)
T 3v65_B 187 NLDGAHRKVLLW--Q-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 251 (386)
T ss_dssp BTTSCSCEEEEC--S-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eCCCCceEEeec--C-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence 876543211111 0 0114688999987666665544 3 678888886543333333334567899
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+++|.++.++++-+..+.|..+|+. .......+.........+++ ..+.++++-...+.|..+|..++
T Consensus 252 avd~~~~~lY~aD~~~~~I~~~d~d----G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 252 TIDYAGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEGGGTEEEEEETTTTEEEEECTT----SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCC----CCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 9995566666666677889999964 12222222222344567777 34555666666788888885443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-05 Score=64.69 Aligned_cols=202 Identities=7% Similarity=-0.046 Sum_probs=119.9
Q ss_pred CCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~ 116 (409)
....+..++|++.+..|..+ ...+.|..++++..... ..... + ...+..+++.+.+..| ++-...+.|.+.+++.
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~-~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVST-G-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeC-C-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 34557899999766655544 45688999998765322 22111 1 1235678888755544 4445678899999875
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........ . .......+++.|.+..|+.+.. . +.|..+++........+...-.....++++|
T Consensus 148 ~~~~~l~~--~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~ 212 (349)
T 3v64_C 148 AHRKVLLW--Q-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY 212 (349)
T ss_dssp CSCEEEEC--T-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEET
T ss_pred CceEEEEe--C-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeC
Confidence 43221110 0 0113688999986666655543 3 7888888764332222222345678999995
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.++.+.++-...+.|..+|+. .......+.........+++. .+..+++-...+.|..++..++
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEECCCCEEEEEeCC----CCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 556666666667889999864 111112222223445677773 4555566566778888875443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-06 Score=78.49 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=102.4
Q ss_pred ceeeEEe-cCceeEeec-----cceEEEEeeecCCC-ceeecC-CCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcC
Q 015301 4 GREVNYS-GRGRFSAAD-----SCHVLSRYLPVNGP-WKVDGM-NSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s-~dg~~~~~~-----~~~~~~~~~~~~~~-~~l~~h-~~~v~~~~~s~~~~~l~t~~~d-----~~i~vw~~~ 70 (409)
....+|| |||++++.. ........+..... ..+..+ ......++|+|||+.|+....| ..|+++++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 3457899 999976631 22222222222221 111111 1123468899999988877655 258888887
Q ss_pred CCeeee-eeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCcccc-ccceeceeeeeeeecCCCCcceee
Q 015301 71 KNWKIQ-KDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARES-LANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
++.... ...... .......+.|+|||++|+..+. ...|.++|+.++.... ...+.. ......
T Consensus 256 t~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------------~~~~~~ 322 (751)
T 2xe4_A 256 KLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP------------REKGVR 322 (751)
T ss_dssp SCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC------------CCTTCC
T ss_pred CCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec------------CCCCce
Confidence 763221 111111 1224567899999999987663 3468888887652111 000000 011134
Q ss_pred EEEEEcCCCCeEEEEEe-c----CeEEEEECCCC-eeee-EEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 146 FSVKFSTDGQELVAAGS-D----NFIYVYDLQAN-KCSL-RIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~-d----~~i~v~d~~~~-~~~~-~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
.++.|+. |+.|+..+. + ..|..+++.++ +... .+. +.. .+..+.+. .+.++++...+|..++|-
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 4555544 444544433 3 36778887653 3222 233 333 34455554 456667777788655554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-07 Score=81.87 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=72.1
Q ss_pred EEEeCC-CCcEEEEEecCC-----------EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 90 DTSLSP-DQRFLVYASICA-----------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 90 ~~~~s~-~~~~l~~~~~dg-----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
++++.+ +++.++.|+.+. .+.+||..+++........... .....++++..+++.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~------------~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH------------DMFCPGISMDGNGQIV 257 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC------------CCSSCEEEECTTSCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC------------CCccccccCCCCCCEE
Confidence 456667 888888887532 6889999887754433221111 1123456778899999
Q ss_pred EEEEe-cCeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEee-CC-----CeEEEeccc
Q 015301 158 VAAGS-DNFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGS-DD-----SLCKVWDRR 215 (409)
Q Consensus 158 ~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~ 215 (409)
++|+. +..+.+||..+.+....-..+... -.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 99884 468999999877654322212221 1334454 5888999988 44 468999964
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-05 Score=66.47 Aligned_cols=197 Identities=10% Similarity=0.067 Sum_probs=111.1
Q ss_pred CCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEEEE
Q 015301 41 SRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVD 113 (409)
Q Consensus 41 ~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~ 113 (409)
.....++|+|+ +..|..+...+.|+.++..++.. ..... ....+..++++++++ |.++...+ .+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-DIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-EEECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-EEeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 34678999995 44455554448899999877633 33222 222589999999999 55444321 232232
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE-c-CCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-P-AHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~v~~~ 190 (409)
.... ....... . .......++++| ++.+.++-..++.|+.+|..++.....+ . +.......+
T Consensus 214 ~~~~-~~~~~~~---------~-----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 214 RASG-FTERLSL---------C-----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp GGGT-TCCEEEE---------E-----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCCC-eeccccc---------c-----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 2111 1000000 0 011356788999 6655544445788999999877652222 1 112223479
Q ss_pred EEeCCCCc-EEEEeeCCCeEEEecccccccCCce--eeeeec---------------cccceeEEEE---------cCCC
Q 015301 191 CFADETGH-LIFSGSDDSLCKVWDRRCFISKGRA--NGVLMG---------------HLEGITFIDS---------RRDG 243 (409)
Q Consensus 191 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~---------------~~~~v~~~~~---------~~~~ 243 (409)
+++ ++++ ++++-...+.|+.+++.. ..+.. ...+.+ .-.....+++ .+++
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 999 7777 455555678899877531 11110 111111 1123566888 6677
Q ss_pred CeEEEEeCCCcEEEeeC
Q 015301 244 RYFISNGKDQTTKLWDI 260 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~ 260 (409)
.++++-...+.|+.++.
T Consensus 356 ~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 356 DFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEEETTTTEEEEECT
T ss_pred cEEEEECCCCEEEEECC
Confidence 76666666778888874
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-05 Score=68.66 Aligned_cols=235 Identities=11% Similarity=0.101 Sum_probs=132.3
Q ss_pred cceeeEEecC---ceeEeeccceEEEEeee-cCCCceeecCCCCeEEEEECCCCCEEEEEeCC---Cc-EEEEEcCCCee
Q 015301 3 VGREVNYSGR---GRFSAADSCHVLSRYLP-VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SN-IKVYNVDKNWK 74 (409)
Q Consensus 3 ~~~~~~~s~d---g~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~-i~vw~~~~~~~ 74 (409)
.+..++++|+ |....+.....+..+-+ ......+.+.......++|+++|+++++-... .. +...+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4678999984 66555543344444444 22223444445668999999999944444321 11 33333322211
Q ss_pred eeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcC
Q 015301 75 IQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 152 (409)
....... -.....++++| ++.++++-..++.|+.++..++.. ........ ......++|+|
T Consensus 220 ~~~~~~~---~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------------~~~~~~ia~dp 282 (433)
T 4hw6_A 220 ERLSLCN---ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------------KGSNFHIVWHP 282 (433)
T ss_dssp CEEEEEE---CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------------CSSCEEEEECT
T ss_pred ccccccc---cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------------CCCcccEEEeC
Confidence 1111111 12356688999 666555555678899999876543 11111000 01134699999
Q ss_pred CCCeEEEEEe-cCeEEEEECC--CCee--eeEEcCC---------------CCCeEEEEE---------eCCCCcEEEEe
Q 015301 153 DGQELVAAGS-DNFIYVYDLQ--ANKC--SLRIPAH---------------KSDVNTVCF---------ADETGHLIFSG 203 (409)
Q Consensus 153 ~~~~l~~~~~-d~~i~v~d~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~~l~~~ 203 (409)
++++|+.+.. .+.|..++.. ++.. ...+.+. -.....+++ . .+++++++-
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD 361 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCD 361 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEE
Confidence 9996666554 6789998865 2321 1112111 123567888 5 677777777
Q ss_pred eCCCeEEEecccccccCCceeeeeecc------------------ccceeEEEEc-CCCCeEEEEeCCCcEEEeeCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGH------------------LEGITFIDSR-RDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+.|+.++. .+. +..+.+. -.....|+++ +++.++++-...+.|+.++++
T Consensus 362 ~~n~~I~~~~~-----~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 362 RDSHTVRVLTP-----EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEECT-----TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEECC-----CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 77788999884 222 2222111 1236788998 566666665667788887754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-05 Score=60.38 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=99.0
Q ss_pred ccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
.+....+..++|+|++..|+ +...++.|...|.. ++......... ......+++.+++.++++.
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g--------------~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF--------------VKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS--------------CSSEEEEEECSTTEEEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC--------------CCChHHeEEeCCCEEEEEE
Confidence 34444799999999866555 56678888888887 44332222111 0136678888888766665
Q ss_pred EecCeEEEEECCCCee---eeEEc------CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee---
Q 015301 161 GSDNFIYVYDLQANKC---SLRIP------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--- 228 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--- 228 (409)
-.++.+.++++..... +.... ..+.....++|. +.++.|+++.+.....+|.++.. .....+....
T Consensus 88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~-~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGL-LSSNELHISKDKA 165 (255)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEEST-TCSSCCEEEECHH
T ss_pred CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEccc-ccCCceeeecchh
Confidence 5577899998765432 22221 134456899999 66666666666555566655311 1111111111
Q ss_pred ----ccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCC
Q 015301 229 ----GHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 229 ----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 262 (409)
.+...+.+++++|... +++.......|..+|...
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 1234578999999654 455555677888888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00015 Score=62.24 Aligned_cols=206 Identities=9% Similarity=-0.064 Sum_probs=121.5
Q ss_pred eeecCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCe---eeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i 109 (409)
.+......+..++|++.+..|..+ ...+.|+.++++... ....... .....+..+++.+.+..| ++-...+.|
T Consensus 106 ~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 106 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeE
Confidence 444456778999999866655544 456788888887521 1112111 112257888998754444 444567889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+.+++.......... .......+++.|.+..|+.+.. .+.|...++........+...-...
T Consensus 184 ~~~~~~g~~~~~l~~~---------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 184 SVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp EEECTTTCSEEEEEEC---------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred EEEeCCCCceEEEEeC---------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 9988876543222110 0113788999997666666543 3678888886544333333344678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-e--ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-M--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..|++++.++.+.++-...+.|..+|+. +.....+ . .......++++. .+.++++-...+.|..+|..++
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-----SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCC-----CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 9999995455555555567889999864 2222222 1 122344566663 3445556666778888886554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00011 Score=63.83 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=92.8
Q ss_pred CeEEEEECCC-CCEE-EEEeCCCcEEEEEcCCCeeeeeeeecc-cccceEEEEEe-------CCCCcEEEEEecCC----
Q 015301 42 RVYTSQFSND-GSFF-VAASQESNIKVYNVDKNWKIQKDIETK-ALRWTITDTSL-------SPDQRFLVYASICA---- 107 (409)
Q Consensus 42 ~v~~~~~s~~-~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~-------s~~~~~l~~~~~dg---- 107 (409)
....|+|+|. +..| ++-...+.|++.|.+.+. +..+.... ..-..+..++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999983 4444 444444678888988763 33333221 12235899999 99999777775543
Q ss_pred ---EEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecCeEEEEECC-------CCe
Q 015301 108 ---IVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDLQ-------ANK 175 (409)
Q Consensus 108 ---~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~-------~~~ 175 (409)
.|.+++... +............ .+ .....++++|++..|+ +-..++.|..+|+. ++.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~---~~--------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA---AY--------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE---EE--------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred cCceEEEEecCCCCceeecccceeec---cC--------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 255555333 1211000000000 00 0356788999555554 44457889999997 554
Q ss_pred e-----------eeE-E-cCCCCCeEEEEEeCCCCcE-EEEeeCCCeEEEecc
Q 015301 176 C-----------SLR-I-PAHKSDVNTVCFADETGHL-IFSGSDDSLCKVWDR 214 (409)
Q Consensus 176 ~-----------~~~-~-~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~iwd~ 214 (409)
. ... + .........++|+ ++++. +++-+..+.|+.++.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred eecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEec
Confidence 3 112 1 1223456899999 78885 445456778888765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00017 Score=59.67 Aligned_cols=184 Identities=8% Similarity=-0.002 Sum_probs=108.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCC----ccccccceece
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSS----ARESLANVTEI 128 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~----~~~~~~~~~~~ 128 (409)
+|+.+.. ..|+..++++..... .... ...+..++|++++..|..+ ...+.|..+++.+. ...... ..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~-~~~~---~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~- 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS-LIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR- 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE-EECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-
T ss_pred EEEEECC-CeEEEEECCCcceEe-hhcC---CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-
Confidence 3444433 458899988764322 2222 2257899999876656555 45689999998752 111000 00
Q ss_pred eeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-
Q 015301 129 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD- 206 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 206 (409)
.......+++.+.+..|+.+ ...+.|.++++........+.........+++.|.++.++++....
T Consensus 75 ------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~ 142 (316)
T 1ijq_A 75 ------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 142 (316)
T ss_dssp ------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred ------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC
Confidence 00135678888755555444 4578999999875443333333445778999994455555554333
Q ss_pred CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
+.|...++. +.....+ ...-.....+++++++..|..+. ..+.|..+|+..
T Consensus 143 ~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 143 AKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 678888753 2222222 12234578899998776665554 467899998764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00018 Score=59.48 Aligned_cols=186 Identities=6% Similarity=0.011 Sum_probs=108.0
Q ss_pred EEEEEeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+|+.+. ...|+..+++.... ....... ...+.+++|.+.+..|..+ ...+.|..++..............
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---- 77 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG---LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---- 77 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE---EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC---CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----
Confidence 344433 45689999887631 1111111 1257789999865555544 467789999987653211100000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i 209 (409)
-.....+++.+.+..|+.+ ...+.|.++++........+.........+++.|..+.++++-. ..+.|
T Consensus 78 ----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred ----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 0135678888755445444 44678999998754333333344566789999944555555432 35778
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 262 (409)
...++. +.....+ ...-.....+++++++..|..+ ...+.|..+|+..
T Consensus 148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 888753 2222222 2223456889999876666555 4467888888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00029 Score=60.38 Aligned_cols=187 Identities=9% Similarity=-0.008 Sum_probs=109.6
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCcccc-ccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARES-LANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~-~~~~~~~~~~ 131 (409)
+|+.+. ...|+..+++...... .... ...+..++|++.+..|..+. ..+.|+.+++....... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~-~~~~---~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---- 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS-LIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE-EECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----
T ss_pred eeEEec-cceeEEEccCCcceeE-eccc---cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----
Confidence 444444 4678888887653222 2222 23688999998766666554 56788888886532100 000000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i 209 (409)
........+++.+.+..|+.+ ...+.|.+.++........+.........+++.|..+.++++-.. .+.|
T Consensus 156 --------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 156 --------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred --------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence 001136788888744445444 446889999987655444444444568999999545555555423 3678
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
...++. +.....+ ...-.....|++++++..|..+. ..+.|..+|+..
T Consensus 228 ~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 228 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 888753 2222222 22335678899998777666654 466888888764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00025 Score=58.71 Aligned_cols=202 Identities=10% Similarity=-0.036 Sum_probs=118.8
Q ss_pred CCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCC---eeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVD 113 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~ 113 (409)
....+..++|++++..|. +-..++.|..++++.. ......... . -..+..+++.+.+..| ++-...+.|.+.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-C-CCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 445688999998765555 4455688999998761 121222211 1 1245778888755545 4445678999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--CeEEEEECCCCeeeeEE-cCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRI-PAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~v~~~ 190 (409)
............ .......+++.|.+..|+.+... +.|...++.. .....+ ...-.....+
T Consensus 106 ~~g~~~~~~~~~---------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 106 TKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGI 169 (316)
T ss_dssp TTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEE
T ss_pred CCCCceEEEEEC---------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEE
Confidence 875432211110 01146789999866666655543 6888888753 333333 2334567899
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+++|.++.++++-+..+.|..+|+. +.....+. ........+++. .+.++++-...+.|..++..++.
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~d-----g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCeEEEEecC-----CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 9994455555555567889999964 22222221 112345677775 35556666667889888875543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00026 Score=61.55 Aligned_cols=266 Identities=11% Similarity=0.071 Sum_probs=142.8
Q ss_pred eEEEEEeCC-CCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-------cCCCCeE
Q 015301 87 TITDTSLSP-DQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-------STDGQEL 157 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l 157 (409)
....|+|+| +...|.++.. .+.|++.|+.++.......... ........++| +++++.|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~------------~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT------------IPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT------------SSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc------------cccCCCcEEEEeecccccCCCCCEE
Confidence 467899998 3555555543 4678889988876543332211 01124888999 9999977
Q ss_pred EEEEecC-------eEEEEECCC-Ceee-----eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc---cCC
Q 015301 158 VAAGSDN-------FIYVYDLQA-NKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI---SKG 221 (409)
Q Consensus 158 ~~~~~d~-------~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~ 221 (409)
+++...+ .|.+++... +... ..+.. ......++++|.++.++++-..++.|..+|+.... ..+
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 7776543 366665433 2221 22221 12345778885577777777788999999975100 011
Q ss_pred ce-----------eee-e-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 222 RA-----------NGV-L-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 222 ~~-----------~~~-~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.. ... . .+.......++|+|+|++|+.+ .....|+.++................ ..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG----------~~ 356 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVG----------GY 356 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE----------BT
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecC----------CC
Confidence 11 111 1 1122345789999999954444 45678888665431100000000000 00
Q ss_pred cceeccccCcc-ceeeeecccceeeeeEEEEeeeec-------CCCCEEEEEeCCCeEEEEEccCCceEEEeccC-----
Q 015301 288 YARRLKHPHDQ-SLATYKGHSVLRTLIRCYFSPEYS-------TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH----- 354 (409)
Q Consensus 288 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----- 354 (409)
..... .++. ....|. .... .+... +++.++++=..+.+|+.++ .++. +.++.+.
T Consensus 357 g~~G~--~DG~~~~a~f~------~P~~---gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~ 423 (496)
T 3kya_A 357 KQSGY--RDDVGTEARMN------NPCQ---GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTS 423 (496)
T ss_dssp TBCCC--BCCBGGGCBCS------SEEE---EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHH
T ss_pred CCCcc--cCCcccccccC------CCeE---EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccccc
Confidence 00000 0000 000000 0000 11122 3466677667788899998 4553 4444321
Q ss_pred -------------------CcceeeeEEecC-cCeEEeecCCCeEEEEecCCCc
Q 015301 355 -------------------NAPVRDCCWHPI-YPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 355 -------------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
-.....|+++++ +.++++=..+.+|+.++++...
T Consensus 424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 013567899997 7766666778899999987643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00037 Score=56.71 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=111.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeec----ccccceEEEEEe---CCCCcEEEEEec
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIET----KALRWTITDTSL---SPDQRFLVYASI 105 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~---s~~~~~l~~~~~ 105 (409)
..+....-.--+++|.+....|..++ ..++|..|+...+......... ......+..+.| .|+++++++...
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 34445555566889988666666665 7899999998755322221211 111224689999 688777775432
Q ss_pred -------------CCEEEEEEcC---CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-CeEEE
Q 015301 106 -------------CAIVNIVDVG---SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-NFIYV 168 (409)
Q Consensus 106 -------------dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v 168 (409)
+..|..+|+. +++......+...... +.............++..++|+..++++.. +.|..
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 6789999998 6655433322211100 000000011248899999999999988888 88888
Q ss_pred EECCCCeeeeEE--c----CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 169 YDLQANKCSLRI--P----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 169 ~d~~~~~~~~~~--~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.... .+..+ . ......+.|++. |++++|++....|.+..+|++
T Consensus 164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ECTTSC-CEEEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred EeCCCC-EEeeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 886543 23222 1 112236799999 788888777679999999976
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0012 Score=61.44 Aligned_cols=187 Identities=9% Similarity=-0.012 Sum_probs=107.0
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcccc-ccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARES-LANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~-~~~~~~~~~~ 131 (409)
+|+.+. ...|+..++...... .+... ...+..++|.+....|+.+ ...+.|+.+++....... ......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~-~l~~~---~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---- 467 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT-SLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 467 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE-EEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred cccccc-ccceeEeeccCCcce-eeecC---CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe----
Confidence 444443 355888887765322 22222 2257889999865555544 456788888886532100 000000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-CeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i 209 (409)
........+++.+.+..|+.+. ..+.|.+.++........+.........|++.|..+.++++-... +.|
T Consensus 468 --------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 468 --------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp --------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred --------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 0011366788888775565554 468999999875544333344455689999995455555554333 678
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
...++. +.....+ .........|++++.+..|+.+. ..+.|...++..
T Consensus 540 ~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 540 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 888753 3322222 22335678899997766665554 456788888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0011 Score=61.82 Aligned_cols=209 Identities=10% Similarity=-0.037 Sum_probs=120.7
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCe---eeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 109 (409)
.+......+..++|++.+..| ++-...+.|+.++++... ....... .....+..|++.+.++.|..+ ...+.|
T Consensus 418 ~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 418 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 444455678899999855555 454556788888887531 1111111 112246778888877555544 567889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+.++.......+... .......|++.|.+.+|+.+.. .+.|...++........+...-...
T Consensus 496 ~v~~ldG~~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp EEEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred EEEeCCCCeEEEEEeC---------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 9999875543222110 0113788999997666666653 2679999986544433344344678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
..|++.+..+.++++-...+.|...++. .......+.. ......+|++.. +.++++-...+.|...|..++..
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~d----G~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVN----GGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecC----CCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcc
Confidence 9999995555555555566788888864 2222122221 122344666643 34444445567788777655443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00083 Score=55.49 Aligned_cols=229 Identities=10% Similarity=-0.013 Sum_probs=131.9
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCS 177 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~ 177 (409)
+|+.+. ...|+..++.............. ..+..++|.+.+..|+.+. ..+.|..+++..+...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~--------------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~ 70 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGL--------------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEE--------------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCC--------------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce
Confidence 444443 46788899876542111111111 1367899998655555544 4678999998765322
Q ss_pred -eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeC--CC
Q 015301 178 -LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGK--DQ 253 (409)
Q Consensus 178 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--dg 253 (409)
..+...-.....+++.+..++++++-...+.|.++++. +..... ..........+++.|.+..|+.... .+
T Consensus 71 ~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~ 145 (318)
T 3sov_A 71 QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP 145 (318)
T ss_dssp CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCC
Confidence 22222234567888885566777776777899999864 222222 2233455788999987665555542 46
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-e
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-S 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~ 332 (409)
.|...++.... ...+-... ......+++++++..|+.+ +
T Consensus 146 ~I~r~~~dG~~-----------------------------------~~~~~~~~-----l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 146 KIERAGMDGSS-----------------------------------RFIIINSE-----IYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEEEEETTSCS-----------------------------------CEEEECSS-----CSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEEcCCCC-----------------------------------eEEEEECC-----CCCccEEEEeccCCEEEEEEC
Confidence 77777765311 11110000 1122355788766655555 4
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
..+.|..+|+..................+++.. +.++.+-...+.|..++..+++
T Consensus 186 ~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 568899999864433322332334556777753 3455555567889999886554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0009 Score=55.66 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=112.7
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceee-----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD-----GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~-----~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
.++|.+.+++...+.+....+.+.......+... .....+.++.|++ +..++ ++.++.|.. ..+.++.....
T Consensus 38 ~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~ 114 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQI 114 (327)
T ss_dssp EEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEEC
T ss_pred EEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceEC
Confidence 4667777666544444333333322222222221 1245789999986 44444 455664433 34444333332
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....+...+..+.+.+++..++++. +|.|.. ..+.++.-.... . .....+..+.+.+++.+++
T Consensus 115 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~--~------------~~~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 115 PLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALV--Q------------EAIGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp CCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEE--C------------SCCCCEEEEEECTTSCEEE
T ss_pred ccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEee--c------------CCCcceEEEEEcCCCcEEE
Confidence 22112223467788777776666554 554321 122222111110 0 1122578899999888776
Q ss_pred EEEecCeEEE-EEC--CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----ccc
Q 015301 159 AAGSDNFIYV-YDL--QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----GHL 231 (409)
Q Consensus 159 ~~~~d~~i~v-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~ 231 (409)
++. +|.+.. .|- .+-+.+ -......+..+.+. +++.++ .++.+|.+++.+.. .+..-..+. ...
T Consensus 179 ~g~-~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~-~~g~~~-~~~~~G~~~~s~~D----~G~tW~~~~~~~~~~~ 249 (327)
T 2xbg_A 179 VSS-RGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFT-PDGRLW-MIVNGGKIAFSDPD----NSENWGELLSPLRRNS 249 (327)
T ss_dssp EET-TSSEEEEECTTCSSCEEE--ECCSSSCEEEEEEC-TTSCEE-EEETTTEEEEEETT----EEEEECCCBCTTSSCC
T ss_pred EEC-CCcEEEEeCCCCCceeEC--CCCCCCccceeEEC-CCCCEE-EEeCCceEEEecCC----CCCeeEeccCCcccCC
Confidence 654 454444 342 222322 12345678899988 566655 45567887776311 122111111 122
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcE
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+..+.+.+++..++++ .+|.+
T Consensus 250 ~~~~~v~~~~~~~~~~~g-~~g~i 272 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAG-GAGAL 272 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-STTCE
T ss_pred cceEEEEecCCCEEEEEe-CCCeE
Confidence 357888898877766654 46655
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00047 Score=56.61 Aligned_cols=193 Identities=12% Similarity=0.202 Sum_probs=115.2
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC---CCc---EEEEeeC---CCeEEEecccccccCCce
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGH---LIFSGSD---DSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~iwd~~~~~~~~~~ 223 (409)
...+++.....+-+.+||+ +++.++.+.. +.++.+..-|. .+. ++++... +++|.+|++.. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp---~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG---KNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT---TTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC---CCCc
Confidence 3445665666789999999 8888888864 56777776620 111 3333333 57899997631 1112
Q ss_pred eeeeec------cc-cceeEEEE--cCC-CC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 224 NGVLMG------HL-EGITFIDS--RRD-GR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 224 ~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+..+.. .. ..+..+++ +|. ++ ++++...+|.+..|++........
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------------------ 168 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------------------ 168 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------------------
Confidence 322211 11 45666777 664 43 677888899999999854211100
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-----CCceEEEec-cC-CcceeeeEE--
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-----SGAQVAKLD-FH-NAPVRDCCW-- 363 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~-- 363 (409)
..+.+..+.... ... .+..++....|+.+-++.-|..|+.+ +++.+..+. ++ ...+..|+.
T Consensus 169 ---~~~lVR~f~lgs---q~E----gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 169 ---SGKKVRAFKMNS---QTE----GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp ---EEEEEEEEECSS---CEE----EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred ---cceEEEEecCCC---Ccc----eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 023334444332 122 22456667899999998777777754 345555542 22 236788887
Q ss_pred ecCcC-eEEeec-CCCeEEEEecC
Q 015301 364 HPIYP-MLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 364 s~~~~-~l~s~~-~dg~i~iw~~~ 385 (409)
.++++ +|++++ .++.+.+||..
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 45555 555554 67799999986
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-05 Score=72.47 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=128.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCC----ccccccceeceeeeeeee
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSS----ARESLANVTEIHKGLDFS 135 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~----~~~~~~~~~~~~~~~~~~ 135 (409)
.+.|+..++++...... .... ..+..++|++.+..|+.+. ..+.|+.+++.+. ....... .
T Consensus 385 ~~~I~~id~~~~~~~~~-~~~~---~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~-------- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL-IPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R-------- 450 (699)
T ss_dssp TTC-CEECTTSCCEECC-SCCC---TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--S--------
T ss_pred ccceEEEeCCCCcceee-eccC---cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--C--------
Confidence 35688888776533221 1111 2467789998777776664 4578888888751 1111100 0
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-CeEEEec
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLCKVWD 213 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd 213 (409)
.......+++.+.+..|+.+ ...+.|.++++........+.........+++.|..+.++++-... +.|..++
T Consensus 451 -----~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 451 -----DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -----CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred -----CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 00124567787544444443 4467899999875543333333334567889984455555444333 6788877
Q ss_pred ccccccCCceeeee-eccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 214 RRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 214 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+. +.....+ .........|+++|++..|+. -...+.|..+++.......
T Consensus 526 ~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~------------------------ 576 (699)
T 1n7d_A 526 LN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------------------ 576 (699)
T ss_dssp SS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE------------------------
T ss_pred CC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE------------------------
Confidence 53 2222222 122334678999987655544 4456789998876411100
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
+ +...... ...+.+++.. +.++++....+.|..++..+++.+..+.......+.|++.
T Consensus 577 --------~--~~~~~~~----~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 577 --------I--LEDEKRL----AHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp --------E--CCCSSSC----SSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred --------E--EecCCcC----CCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 0 0000000 0011222322 2445555567899999988888877775433344555443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0017 Score=54.54 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceee------cCCCCeEEEEECCC---CCEEEEEeC----C----CcEE
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD------GMNSRVYTSQFSND---GSFFVAASQ----E----SNIK 65 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~v~~~~~s~~---~~~l~t~~~----d----~~i~ 65 (409)
.++.+++.|||+++.+.....+..+-+... ..+. .-......|+|+|+ +..|.++.. + ..|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 468899999999777755444444432222 2221 12356889999997 444544332 2 5677
Q ss_pred EEEcCCC------ee-eeeeee-cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCccccccc
Q 015301 66 VYNVDKN------WK-IQKDIE-TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 66 vw~~~~~------~~-~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~~ 124 (409)
.|+.... .. +..... ...| ....++|.|||.+.++.+. .|.|.-++.+..-.. ..
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~--~n 184 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA--DN 184 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT--TS
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC--CC
Confidence 7776653 11 111111 1122 3467999999986666432 144554544321000 00
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecC----eEEEEECCC--------C--------eeeeEEcCC
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDN----FIYVYDLQA--------N--------KCSLRIPAH 183 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~v~d~~~--------~--------~~~~~~~~~ 183 (409)
... ...+ +.. ++ .....++|+| ++. |.++.... .|.+..... + .++..+...
T Consensus 185 pf~-~~~i-~a~---G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFP-NSPI-WSY---GH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SST-TCCE-EEE---CC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCC-CCcE-EEE---cc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 000 0000 000 01 1256799999 565 44443321 244332111 0 122233112
Q ss_pred CCCeEEEEEeC------CCCcEEEEeeCCCeEEEecccccccCCcee--eee-eccccceeEEEEcCCCCeEEEEe
Q 015301 184 KSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRAN--GVL-MGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 184 ~~~v~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
......++|.. .++.++++.-..+.|...++.. .+... ..+ .+....+..+++.|||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD---NMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG---GGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC---CCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 34577888831 4567777766677888887641 11111 122 22245688999999998666654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0034 Score=57.07 Aligned_cols=204 Identities=10% Similarity=-0.011 Sum_probs=116.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~ 116 (409)
.-.....++|++.+..|..+. ..+.|..++++........... + -..+..+++.+.+..|..+ ...+.|.+.+++.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-G-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-C-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 345678999998776666554 4678888888765221222221 1 1258889999866555544 5678999999876
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........ .. -.....+++.|.+..|+.+.. .+.|...++............-.....+++.+
T Consensus 116 ~~~~~l~~-~~--------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~ 180 (619)
T 3s94_A 116 SLRKVLFW-QE--------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 180 (619)
T ss_dssp CSCEEEEC-SS--------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred CCEEEEEe-CC--------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence 54322211 00 113677999997666666553 36777777754333333333445678999995
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.++.++++-...+.|...|+. .........+......++++..+ ..+++-...+.|...|..+..
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLD----GTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSS----CCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred cCCEEEEEeCCCCeEEEecCC----CCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 456666665667789988864 11111111112222345666654 444444456778888776543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00059 Score=55.52 Aligned_cols=168 Identities=6% Similarity=-0.000 Sum_probs=102.6
Q ss_pred EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeec----c--ccceeEEEE---cCCCCeEEEE
Q 015301 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMG----H--LEGITFIDS---RRDGRYFISN 249 (409)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~ 249 (409)
+........+++|.+.++.++++.-..+.|..||.. .+.... .+.. . ...+..+.+ .|+++++++.
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~----~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~ 83 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK----TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM 83 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT----TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC----CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence 444455667899984455555555589999999963 222221 2221 0 113578999 6887777754
Q ss_pred e-------------CCCcEEEeeCC---CCcccccccccccccccccccccccccceeccccCccceeeee--cccce--
Q 015301 250 G-------------KDQTTKLWDIR---KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK--GHSVL-- 309 (409)
Q Consensus 250 ~-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 309 (409)
. .+..|..||+. +.+. +.... .....
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~----------------------------------~~~~dL~~~~~~~~ 129 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKP----------------------------------VWSVNFEKVQDEFE 129 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCC----------------------------------SEEEESHHHHHHHH
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCE----------------------------------EEEecCcccccccc
Confidence 3 15678888987 4221 11111 00000
Q ss_pred ---eeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCCceEEEec--c----CCcceeeeEEecCcCeEEeecCCCeE
Q 015301 310 ---RTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSGAQVAKLD--F----HNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 310 ---~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~--~----~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
......+..++..++|+..++++.. +.|...+... +.+..+. . .....+.|+++|++..|++...+|.|
T Consensus 130 ~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 130 KKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp HHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred ccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 0011335567788999999999888 8877777643 3333221 1 12236799999999977777669999
Q ss_pred EEEecCC
Q 015301 380 VRWEIPG 386 (409)
Q Consensus 380 ~iw~~~~ 386 (409)
..+|+..
T Consensus 209 ~~fD~~~ 215 (334)
T 2p9w_A 209 TAFDVSK 215 (334)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9999874
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0021 Score=53.95 Aligned_cols=234 Identities=8% Similarity=0.011 Sum_probs=116.3
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCce------eecCCCCeEEEEECCC---CCEEEEEeC-C-----CcEEEE
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWK------VDGMNSRVYTSQFSND---GSFFVAASQ-E-----SNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~------l~~h~~~v~~~~~s~~---~~~l~t~~~-d-----~~i~vw 67 (409)
.++.+++.|||+++.+.....+..+. ...... ...-......++|+|+ +..|.++.. + +.|..|
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 46889999999977765544444433 111111 1122456899999998 555544432 2 568888
Q ss_pred EcCCCe-----eeeeeee---cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcccccccee
Q 015301 68 NVDKNW-----KIQKDIE---TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 68 ~~~~~~-----~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~~~~ 126 (409)
+...+. .+..... ...| ....++|.|||.+.++.+. .|.|.-++.+.. ........
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~ 187 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFL 187 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCccc
Confidence 876431 1111111 1122 3468999999976665432 145555555431 00000000
Q ss_pred c-e-eeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEec-Ce--------EEEEECCCCe------------------e
Q 015301 127 E-I-HKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSD-NF--------IYVYDLQANK------------------C 176 (409)
Q Consensus 127 ~-~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-~~--------i~v~d~~~~~------------------~ 176 (409)
. . .....+.. ++ .....++|+| ++. |.++... .. |.+. ..+. +
T Consensus 188 ~~~~~~~~i~a~---G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 188 GRRGARPEVYSL---GH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TCTTSCTTEEEE---CC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCCCCccEEEE---cC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCC
Confidence 0 0 00000000 01 1366789999 555 4444332 22 3332 2221 2
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC--CceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK--GRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+..+. +......++|. +++++++....+.|...++...... ......+......+..+++.|||.++++..
T Consensus 261 ~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 261 LYFWP-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SEECT-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred eEecC-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22232 23356778885 5677776666777877776421100 000122222235688999999998666653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=54.38 Aligned_cols=194 Identities=13% Similarity=0.199 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC----CcE--EEEEe--c--CCEEEEEEcC--CCc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD----QRF--LVYAS--I--CAIVNIVDVG--SSA 118 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~--~--dg~i~~w~~~--~~~ 118 (409)
...+++.....+-+.+||+ .++.+.... . +.++.+..-|+ ++. |+.++ . +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-T----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC-C----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc-C----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667788999999 554555432 1 24555555442 222 33333 3 5789999774 332
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEE--cCC-CC-eEEEEEecCeEEEEECC-------CCeeeeEEcCCCCCe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKF--STD-GQ-ELVAAGSDNFIYVYDLQ-------ANKCSLRIPAHKSDV 187 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~v 187 (409)
.......... +.. ....+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. .+.+
T Consensus 113 l~~i~~~~~p-----v~t----~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~ 182 (355)
T 3amr_A 113 LQSMTDPDHP-----IAT----AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQT 182 (355)
T ss_dssp EEECSCTTSC-----EEC----CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCE
T ss_pred eeeccccccC-----cCC----CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCc
Confidence 2111110000 000 0024666777 664 43 67778888999999882 3355666654 4678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEeccccccc-CCceeeeee-cc-ccceeEEEE--cCCCC-eEEEEe-CCCcEEEeeC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLM-GH-LEGITFIDS--RRDGR-YFISNG-KDQTTKLWDI 260 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~ 260 (409)
..+... +....|+.+-++.-|..++.+.... ....+.... ++ ...+..|++ .++++ +|++++ .+....+||.
T Consensus 183 EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 183 EGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 889998 6777888888886666666431110 122333221 22 236788877 45555 666666 5779999998
Q ss_pred C
Q 015301 261 R 261 (409)
Q Consensus 261 ~ 261 (409)
.
T Consensus 262 ~ 262 (355)
T 3amr_A 262 Q 262 (355)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00081 Score=55.22 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCcEEEEEe-cC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----C
Q 015301 96 DQRFLVYAS-IC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----N 164 (409)
Q Consensus 96 ~~~~l~~~~-~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~ 164 (409)
++..++.|+ .+ ..+.+||..+.+........... .....+. .++..++.|+.+ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------------~~~~~~~--~~~~l~v~GG~~~~~~~~ 78 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR-------------RYVASVS--LHDRIYVIGGYDGRSRLS 78 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC-------------BSCEEEE--ETTEEEEECCBCSSCBCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh-------------ccccEEE--ECCEEEEEcCCCCCccCc
Confidence 455666666 33 36888888877644333221110 0111222 256777777754 4
Q ss_pred eEEEEECCCCe---eeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccce
Q 015301 165 FIYVYDLQANK---CSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 165 ~i~v~d~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
.+.+||..+.+ .... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+.......
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQTAREGA 153 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECSSCCBSC
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCC--CeEEECCCCCCCcccc
Confidence 68999998766 3322 2211111 222332 56777777654 3577888641 1112222221111111
Q ss_pred eEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 235 TFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 22222 56677777654 3477777665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0025 Score=53.53 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=61.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEec
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSD 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d 163 (409)
....++|.|+|++++ +..+|.|++++ +++........ ...........++++|+ +..|+++...
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~----------v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELS----------VYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECC----------CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecce----------EeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 477899999998555 55679999998 33321111110 00011235789999998 5566655442
Q ss_pred ------CeEEEEECCCCe-----ee-eEEc---CCCCCeEEEEEeCCCCcEEEEee
Q 015301 164 ------NFIYVYDLQANK-----CS-LRIP---AHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 164 ------~~i~v~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+.|..++...+. .+ ..+. ........++|. +++.++++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 678888876432 11 1233 111234689999 7887776643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0025 Score=52.25 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccc
Q 015301 52 GSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESL 122 (409)
Q Consensus 52 ~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~ 122 (409)
+.+++.|+.+ ..+.+||..+.. .............-..+.+ ++..++.|+.+ ..+.+||..+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 4455566543 358888888763 2222111111111112222 56777777754 3588888887764433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCC
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLRI--PAHKSDVNTVCFADE 195 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~ 195 (409)
....... .....+.+ +++.++.|+.+ ..+.+||+.+.+....- +..... .+++..
T Consensus 93 ~~~p~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-- 154 (302)
T 2xn4_A 93 ANMRDRR-------------STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV-- 154 (302)
T ss_dssp CCCSSCC-------------BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE--
T ss_pred CCCCccc-------------cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE--
Confidence 3221110 01112222 66777777764 36888998877654321 211111 223333
Q ss_pred CCcEEEEeeCC-------CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCC
Q 015301 196 TGHLIFSGSDD-------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 262 (409)
Q Consensus 196 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 262 (409)
++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATT--NEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCC--CcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 56677777643 3478888641 111222112111111122222 567777776543 577787765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0029 Score=51.91 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCc-
Q 015301 51 DGSFFVAAS-QE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSA- 118 (409)
Q Consensus 51 ~~~~l~t~~-~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~- 118 (409)
++.+++.|+ .+ ..+.+||..++. .............-..+. .++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 368899988763 222111111111111222 256777777754 368899988776
Q ss_pred --cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeEEcCCCC-CeEEE
Q 015301 119 --RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLRIPAHKS-DVNTV 190 (409)
Q Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~-~v~~~ 190 (409)
........... .....+.+ +++.++.|+.+ ..+.+||..+.+....-..... .-.++
T Consensus 91 ~~W~~~~~~p~~r-------------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 155 (301)
T 2vpj_A 91 GVWYSVAPMNVRR-------------GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155 (301)
T ss_dssp CCCEEECCCSSCC-------------BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred CeeEECCCCCCCc-------------cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence 33222211110 01122222 66777777653 4688999987764432211111 11223
Q ss_pred EEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeC
Q 015301 191 CFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDI 260 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 260 (409)
+.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+
T Consensus 156 ~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 156 VVA--SGVIYCLGGYDGLNILNSVEKYDPHT--GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEE--CCEEEEECCCCCCcccceEEEEeCCC--CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 332 56777777754 3578888641 111222111111111122222 56677777654 35788887
Q ss_pred CC
Q 015301 261 RK 262 (409)
Q Consensus 261 ~~ 262 (409)
.+
T Consensus 230 ~~ 231 (301)
T 2vpj_A 230 RT 231 (301)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0023 Score=52.46 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=36.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC-----eEEEEecCCCc
Q 015301 324 AQKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC-----NIVRWEIPGIG 388 (409)
Q Consensus 324 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 388 (409)
++++++.|+.+ ..+.+||..+.+-...-.........-+...++++++.|+.++ .+.+||+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 46777777654 3689999877643221111111111112223667777777553 48899987653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.1e-05 Score=70.68 Aligned_cols=203 Identities=10% Similarity=-0.063 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCC---eeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcC
Q 015301 41 SRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVG 115 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~ 115 (409)
..+..++|++.+..|+.+. ..+.|+.+++... ......... . ...+..|++.+.+..| ++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-C-C--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-C-CCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 4567889998776666553 4578999998751 111111111 1 1135568888654444 444556789999887
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEE-cCCCCCeEEEEE
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRI-PAHKSDVNTVCF 192 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~ 192 (409)
......+.... ......+++.|.+.+|+.+.. .+.|.++++.... ...+ ...-.....|++
T Consensus 484 g~~~~~l~~~~---------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 484 GVKRKTLFREQ---------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITL 547 (699)
T ss_dssp SCCEEEECCCS---------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEE
T ss_pred CCceEEEEeCC---------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEE
Confidence 55332221100 013567888886665655543 2678887775332 2222 222345678999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+|..+.++++-+..+.|..+++.. .....+............|++..+ .++++....+.|..+|..++.
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred eccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 955566666766778899999741 111111111111122345555443 455555567789988876543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0053 Score=50.49 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=94.2
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----C-----CEEEEEEcCC
Q 015301 50 NDGSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-----AIVNIVDVGS 116 (409)
Q Consensus 50 ~~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~~w~~~~ 116 (409)
-++.+++.|+.+ ..+.+||..+.. .............-..+.+ ++..++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 356677777632 468899988763 2221111111111112222 5677777765 2 3578888887
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeE--EcCCCCCeEE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLR--IPAHKSDVNT 189 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~ 189 (409)
.+........... .....+.+ +++.++.|+.+ ..+.+||..+.+.... ++..... .+
T Consensus 100 ~~W~~~~~~p~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~ 163 (308)
T 1zgk_A 100 NQWSPCAPMSVPR-------------NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VG 163 (308)
T ss_dssp TEEEECCCCSSCC-------------BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CE
T ss_pred CeEeECCCCCcCc-------------cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eE
Confidence 7644332221110 01122222 67777777654 4688999987764432 1211111 12
Q ss_pred EEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEee
Q 015301 190 VCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWD 259 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd 259 (409)
++.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPER--NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCC--CeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEe
Confidence 2332 56777777754 4578888641 111111111111111222223 56677777654 4577888
Q ss_pred CCC
Q 015301 260 IRK 262 (409)
Q Consensus 260 ~~~ 262 (409)
+.+
T Consensus 238 ~~~ 240 (308)
T 1zgk_A 238 VET 240 (308)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0049 Score=50.73 Aligned_cols=145 Identities=10% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe----c----
Q 015301 96 DQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----D---- 163 (409)
Q Consensus 96 ~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d---- 163 (409)
++..++.|+.+ ..+.+||..+.+........... .. ...+.+ ++..++.|+. +
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---------~~----~~~~~~--~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR---------SG----LAGCVV--GGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC---------BS----CEEEEE--TTEEEEECCEEEETTEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc---------cc----ceEEEE--CCEEEEECCCcCCCCCCee
Confidence 55666777632 35788888877654432221110 01 111222 6667777765 2
Q ss_pred -CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeecccccee
Q 015301 164 -NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
..+.+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+........
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER--DEWHLVAPMLTRRIGVG 163 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTT--TEEEECCCCSSCCBSCE
T ss_pred cceEEEECCCCCeEeECCCCCcCccc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCC--CeEeECCCCCccccceE
Confidence 4688999887764332 1211111 222222 56777777644 3577888641 11111111111111112
Q ss_pred EEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 236 FIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
.+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 2222 56677777654 3477777655
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.006 Score=50.13 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred CcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEE
Q 015301 97 QRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYD 170 (409)
Q Consensus 97 ~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d 170 (409)
+..++.|+. ...+.+||..+.+-........... ....+.+ ++..++.|+.+ ..+.+||
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~-------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d 76 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR-------------DAACVFW--DNVVYILGGSQLFPIKRMDCYN 76 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB-------------SCEEEEE--TTEEEEECCBSSSBCCEEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc-------------eeEEEEE--CCEEEEEeCCCCCCcceEEEEe
Confidence 345556654 3568889988876543332221110 1122222 66677777754 6788999
Q ss_pred CCCCeeeeEEcCCCCCe-EEEEEeCCCCcEEEEeeCC------CeEEEeccc
Q 015301 171 LQANKCSLRIPAHKSDV-NTVCFADETGHLIFSGSDD------SLCKVWDRR 215 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 215 (409)
..+.+....-....... .+++. -++.+++.|+.+ ..+.+||+.
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 98876543322111111 12222 256777777765 458888864
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0073 Score=50.94 Aligned_cols=268 Identities=7% Similarity=0.108 Sum_probs=164.6
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
+..|.|-|+..+....+.. . . --+.-.+|..+.||.-. ...+.++|+++........+.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrp-i-~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP-I-S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE-C-C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceecc-c-c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 3478888988764442211 1 1 12244688888888765 7899999999887655544433
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----CCCeEEEEEeCCCCcEEEEee-------CCCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~ 208 (409)
+|.-=.|-.+. .|+..+ +..|+-|++.. ..+++.+..| ...|..-..+ ++.++++..+ -.|.
T Consensus 107 ---~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 ---DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp ---CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEE
T ss_pred ---CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccce
Confidence 24444555444 344443 57899999964 3455555443 3456666777 7777776543 2467
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCC---CeEEEEeC---CCcEEEeeCCCCc-ccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGK---DQTTKLWDIRKMS-SNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+.+..+. ..++.+.. .+.+++.++.... .......
T Consensus 181 mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k---------- 245 (494)
T 1bpo_A 181 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------- 245 (494)
T ss_dssp EEEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC----------
T ss_pred EEEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc----------
Confidence 889985 456667788887766555543221 23343433 2688888886531 1111100
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
+.+..+-... .......++..|+.-..+..-+.-|.|++||++++.++..-+-...+|..-
T Consensus 246 ----------------k~vdv~fppe---~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 246 ----------------KAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp ----------------EEEECCCCTT---STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ----------------eeeeeeCCcc---cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence 0000000000 001122344567777889999999999999999999998888777777766
Q ss_pred EEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+-+....=++.....|.|.--.+++..
T Consensus 307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 307 APHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCCCcEEEEccCceEEEEEEcccc
Confidence 666655556666688888877776644
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.89 E-value=0.022 Score=55.71 Aligned_cols=192 Identities=9% Similarity=-0.007 Sum_probs=99.6
Q ss_pred CCCeEEEEECCC------CCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeC--CCCcEEEEEecCCEEE
Q 015301 40 NSRVYTSQFSND------GSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS--PDQRFLVYASICAIVN 110 (409)
Q Consensus 40 ~~~v~~~~~s~~------~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~ 110 (409)
...|.|+++.|. ++++|.|.. |++++|+++++.+.+... .... ...+.++.+. ....+|.+|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE-MLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-ECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE-ECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 568999999863 468999996 999999999875444322 1211 1123333332 2456888999999887
Q ss_pred EEEcCC--CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGS--SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
-+.++. +........ +.+ ..++.-..+...+..-+.+..+....++.-+ ++.... +.....+.
T Consensus 631 ~~~~d~~tg~l~d~r~~--------~LG-----~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~ 695 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKV--------TLG-----TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVN 695 (1158)
T ss_dssp EEEECTTTCCEEEEEEE--------ECC-----SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCC
T ss_pred EEEEcCCCCccccceeE--------EcC-----CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhc
Confidence 666543 222111000 101 1134333343334333333334544455433 332221 11222343
Q ss_pred EE-EEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 189 TV-CFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 189 ~~-~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
.+ .|+... .+-++..+ ++.++|..+... ..-....+ .-...+..++++|+.+.++.+..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence 33 343211 23444444 455888886421 12222222 234578899999988877766543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0076 Score=50.19 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=88.1
Q ss_pred EEEEEeCCCCcEEEEE------------ecCCEEEEEEcCCCccccccceeceeeeeeeecC-CCCcceeeEEEEEcC--
Q 015301 88 ITDTSLSPDQRFLVYA------------SICAIVNIVDVGSSARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKFST-- 152 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~------------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-- 152 (409)
...+...|+|..++++ ..+|.|.++|..+...... . +.+... ..........+.+.+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~-------l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-E-------LEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-E-------CEEECSSCCGGGCCEEEEEEEECT
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-E-------EEccCCCCCcCceeeeeeEEEECC
Confidence 4456667776554444 2689999999874322110 0 111110 011223456666655
Q ss_pred CCC-eEEEEEe---cCeEEEEECCCC--e--eeeEEcCC-CCCeEEEEEeCCCCcEEEEee-----------------CC
Q 015301 153 DGQ-ELVAAGS---DNFIYVYDLQAN--K--CSLRIPAH-KSDVNTVCFADETGHLIFSGS-----------------DD 206 (409)
Q Consensus 153 ~~~-~l~~~~~---d~~i~v~d~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d 206 (409)
++. +|+++.. +..|.+|++... . .+..+.+. -...+++++. +++.+.++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCc
Confidence 343 4544432 457777776543 2 12233322 2457899998 7788777654 12
Q ss_pred CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
|.|.-+|. ++ ...+...-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus 203 g~vyr~d~------~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSP------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECT------TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEEC------Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 44555552 22 223333345678999999998777665 467899999864
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0038 Score=52.52 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee-----------eeeeccc----ccceEEEEEeCCC---CcEEEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-----------KDIETKA----LRWTITDTSLSPD---QRFLVYA 103 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-----------~~~~~~~----~~~~v~~~~~s~~---~~~l~~~ 103 (409)
.|..+..||+|++||..+. ..|.|-.+..+.... ....... ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6889999999999999875 479998887432111 1111111 2457999999995 5689999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEE
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYD 170 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d 170 (409)
..|+.|++||+........ ....... .|..+ .....|.+++|.+++-.|.+.+ ..|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg~d--~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNN--SFGLD--ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCS--EEESC--SSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhcccc--ccCCC--cccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999987332222 1111111 12111 1224689999999887777765 678776543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0069 Score=50.43 Aligned_cols=200 Identities=10% Similarity=0.100 Sum_probs=109.8
Q ss_pred CeEEEEECCCCCEEEEEe------------CCCcEEEEEcCCCe-eeeeeee----cccccceEEEEEeCC--CCc-EEE
Q 015301 42 RVYTSQFSNDGSFFVAAS------------QESNIKVYNVDKNW-KIQKDIE----TKALRWTITDTSLSP--DQR-FLV 101 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~------------~d~~i~vw~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~--~~~-~l~ 101 (409)
..-.++..|+|..+++++ .+|.|.++|.++.. ....... ..........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445667788876555542 68999999987431 1111111 111233567777755 343 454
Q ss_pred EEe-c--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-----------------
Q 015301 102 YAS-I--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG----------------- 161 (409)
Q Consensus 102 ~~~-~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------- 161 (409)
++. . +..|.+|+++........ ... +.. ..-...+.+.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~--~~~-----~~g---~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLH--LKT-----IRH---KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEE--EEE-----ECC---TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEE--Eec-----ccc---CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 442 2 567888887654321110 000 000 1122588999999998666543
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCce--eeeeeccccceeEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFID 238 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~ 238 (409)
..|.|.-+|. ++.. .+...-...+.++|+ |+++.|+.+ +..+.|..|++.. .+.. ...+ ...+....++
T Consensus 201 ~~g~vyr~d~--~~~~-~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~---~g~l~~~~~~-~~~g~PDGi~ 272 (355)
T 3sre_A 201 AWSFVTYYSP--NDVR-VVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHA---NWTLTPLRVL-SFDTLVDNIS 272 (355)
T ss_dssp CCEEEEEECT--TCCE-EEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSCEEEEEEE-ECSSEEEEEE
T ss_pred CccEEEEEEC--CeEE-EeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECC---CCcEecCEEE-eCCCCCceEE
Confidence 1245555554 3322 222233457899999 777666554 4678899999752 1211 1222 2245667888
Q ss_pred EcC-CCCeEEEEeCC-CcEEEee
Q 015301 239 SRR-DGRYFISNGKD-QTTKLWD 259 (409)
Q Consensus 239 ~~~-~~~~l~~~~~d-g~i~iwd 259 (409)
+.+ +|++.+++..+ +.|..|+
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCcEEEEecCCceEEEEEC
Confidence 988 58877766544 3444443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.011 Score=48.48 Aligned_cols=186 Identities=11% Similarity=0.093 Sum_probs=92.4
Q ss_pred CEEEEEeC--CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCcccccccee
Q 015301 53 SFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 53 ~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~ 126 (409)
.+++.|+. ...+.+||..++. .............-..+.+ ++..++.|+.+ ..+.+||..+.+........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-WTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-EEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCC-EecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 45556654 3568899988763 2221111111111122222 56777777754 57888998877644332221
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEEcCCCC-CeEEEEEeCCCCcE
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRIPAHKS-DVNTVCFADETGHL 199 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 199 (409)
... .....+.+ +++.++.|+.+ ..+.+||..+.+....-..... .-.+++.. ++.+
T Consensus 90 ~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 152 (306)
T 3ii7_A 90 TPR-------------DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLI 152 (306)
T ss_dssp SCC-------------BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred ccc-------------cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEE
Confidence 110 01122222 67777777765 4689999988765432111111 11122332 5667
Q ss_pred EEEeeC---------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 200 IFSGSD---------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 200 l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
++.|+. -..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPAT--ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEECCCCCCCCcccccceEEEeCCCC--CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 777764 34478888641 111222211111111122222 56677777654 3577787765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=0.036 Score=54.27 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=98.6
Q ss_pred CCeEEEEEe----------cCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 154 GQELVAAGS----------DNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 154 ~~~l~~~~~----------d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
..++++|+. .|.|.++++..++..... ....++|++++-. ++.++++. ...+++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~----~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT----TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC----TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC----CCc
Confidence 468888872 478999998755433221 2346889998865 45444443 4789999974 222
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.+..-..+-..+..+.....+++++.|..-..+.++..+... ..+..
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---------------------------------~~L~~ 962 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---------------------------------GNFEE 962 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---------------------------------TEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---------------------------------CeEEE
Confidence 222111111223333333347788888877777776544311 11222
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-------c-eEEEeccC-CcceeeeE---EecC----
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------A-QVAKLDFH-NAPVRDCC---WHPI---- 366 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-------~-~~~~~~~~-~~~v~~~~---~s~~---- 366 (409)
+.......... +..+- +...++.+..+|.+.++..... + ....-.-| ...|+++. +.+.
T Consensus 963 ~a~D~~~~~vt----a~~~l-d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A 963 IARDFNPNWMS----AVEIL-DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp EEECCSCBCEE----EEEEE-ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred EEeecccccEE----EEEEE-ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence 22221111111 11221 1346788899999999876541 1 11111223 34566664 3332
Q ss_pred -----cCeEEeecCCCeEEEEe
Q 015301 367 -----YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 367 -----~~~l~s~~~dg~i~iw~ 383 (409)
...++-++.+|.|.+.-
T Consensus 1038 ~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1038 TSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ---CEEEEEEEEETTSCEEEEE
T ss_pred ccccccceEEEEecCCEEEEEE
Confidence 23567777889888764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0049 Score=60.04 Aligned_cols=269 Identities=7% Similarity=0.111 Sum_probs=154.2
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
...|.|-|+..+..+.+. .- .--+.-.+|..+.||.-. ..++.|||+++........+.+
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (1630)
T ss_pred CceEEEEECCCCCCcccc--cc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence 347888888876443221 11 112334678888777665 7899999998877655554433
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----CCCeEEEEEeCCCCcEEEEee-------CCCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~ 208 (409)
+|.-=.|-.+.. |+..+ +..|+.|++.. ..+++.+..| ...|..-..+ ++.++++..+ -.|.
T Consensus 107 ---~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 ---DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred ---CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccce
Confidence 355555654443 33333 46799999964 2344444433 4566666666 6777776543 3578
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEc--CC-CCeEEEEeC---CCcEEEeeCCCC-cccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSR--RD-GRYFISNGK---DQTTKLWDIRKM-SSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+... +. ...+..+.. .+.++|.++... .........
T Consensus 181 mQLyS~-----er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--------- 246 (1630)
T 1xi4_A 181 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--------- 246 (1630)
T ss_pred eeeeec-----ccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc---------
Confidence 899985 445556677777665444442 12 223332222 368888888653 111111000
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
.+..+-.. ........++..|+.-..+..-+.-|.|++||+.++.++..-+-...+|...
T Consensus 247 -----------------~~~~~~~~---~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 247 -----------------AVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred -----------------cccccCCc---ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence 00000000 0111122344566677788888999999999999999887666555666555
Q ss_pred EEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+-+....=++.....|.|.--.+.+..-
T Consensus 307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 307 APHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ccCCCCCceEEEcCCceEEEEEEccchh
Confidence 5444333344445677776666655443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.014 Score=48.22 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=68.7
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----------cCeEE
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----------DNFIY 167 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~ 167 (409)
+++.|+ ..+.+||..+++-.. ........ .........++..++.|+. ...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 70 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP-------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSC-------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCC-------------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence 344555 678899998876432 11110000 1222233347777888874 12378
Q ss_pred EEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeeccccceeEE
Q 015301 168 VYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 168 v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+
T Consensus 71 ~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 71 QFDHLDSEWLGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS--FKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEETTTTEEEECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEE
T ss_pred EecCCCCeEEECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC--CcEeECCCCCCcccceeEE
Confidence 899888764322 1111111 122332 56777777742 3578888641 1112222221111111222
Q ss_pred EEcCCCCeEEEEeC-C-----CcEEEeeCCC
Q 015301 238 DSRRDGRYFISNGK-D-----QTTKLWDIRK 262 (409)
Q Consensus 238 ~~~~~~~~l~~~~~-d-----g~i~iwd~~~ 262 (409)
. .++++++.|+. + ..+.+||..+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 2 35666777765 2 3577777765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.014 Score=48.18 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=90.9
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----C-------CEEEEEEcCCCccccc
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-------AIVNIVDVGSSARESL 122 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~~w~~~~~~~~~~ 122 (409)
+++.|+ ..+.+||..++.-.......... .........+++.++.|+. + ..+.+||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVP--KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSC--SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCC--ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 46999999887422211111111 1122223346778888873 1 1377888887764433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--------CeEEEEECCCCeeeeE--EcCCCCCeEEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQANKCSLR--IPAHKSDVNTVCF 192 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~ 192 (409)
........ ....+.+ +++.++.|+.+ ..+.+||..+.+.... ++..... .+++.
T Consensus 83 ~~~p~~r~-------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~ 146 (315)
T 4asc_A 83 PPLPSPRC-------------LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS 146 (315)
T ss_dssp CCBSSCEE-------------SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE
T ss_pred CCCCcchh-------------ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE
Confidence 22221110 1112222 66677777743 4688999988754332 2211111 22233
Q ss_pred eCCCCcEEEEeeC-C-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCC
Q 015301 193 ADETGHLIFSGSD-D-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 261 (409)
. ++.+++.|+. + ..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.
T Consensus 147 ~--~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 H--MDLVYVIGGKGSDRKCLNKMCVYDPKK--FEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp E--TTEEEEECCBCTTSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred E--CCEEEEEeCCCCCCcccceEEEEeCCC--CeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 2 5667777776 2 3588888651 111222222111111122222 567777777654 47777776
Q ss_pred C
Q 015301 262 K 262 (409)
Q Consensus 262 ~ 262 (409)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0077 Score=50.72 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc--ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc-c-
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA-N- 124 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-~- 124 (409)
+.+|..++.+- ++.||.-++.... ..+.+.... .-..|..+..+|+|++||..+ +..|.|-.+..+...... .
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 44566666553 4678888877542 223333321 111467799999999999886 568899988743211110 0
Q ss_pred -eeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeEEEEECCCC--eeeeEE---------cCCCCCeEE
Q 015301 125 -VTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQAN--KCSLRI---------PAHKSDVNT 189 (409)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~--~~~~~~---------~~~~~~v~~ 189 (409)
..-........+.......+|..+.|+| .+..|++-..|+.|++||+... ++. .+ ......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 0000011111111112356799999999 4568999999999999999752 122 22 123367889
Q ss_pred EEEeCCCCcEEEEee--CCCeEEEe
Q 015301 190 VCFADETGHLIFSGS--DDSLCKVW 212 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~--~dg~i~iw 212 (409)
++|. .++-.|+..+ ..|.|+-.
T Consensus 185 ~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEc-CCCcEEEEEecCCCCCEEEE
Confidence 9998 6777777755 77887654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.029 Score=47.40 Aligned_cols=217 Identities=8% Similarity=0.055 Sum_probs=136.6
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
+.+|.+.|+.++.......+ ..-+.-.+|..+.++.-. ...+.|+|+++.+.+....- ..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CCeEEEEECCCCCcceeccc------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CC
Confidence 34788899987654322111 133456788888777664 78999999999988887764 44
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc----cceeEEEEcCCCCeEEEEe-------CCCc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----EGITFIDSRRDGRYFISNG-------KDQT 254 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~ 254 (409)
+|.-=.|. +.+.|+..+ +..|+-|++. ....+.+.+..|. ..|..-..+++.++++..+ -.|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~taVyHWsi~---~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSME---GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CCCEEEEE--ETTEEEEEC-SSEEEEEESS---SSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CceEEEec--CCCeEEEEc-CCeeEEeccc---CCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 67777887 445565554 4679999975 2445555555543 4566777788888876544 2467
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec---CCCCEEEEE
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS---TAQKYIYTG 331 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~~ 331 (409)
+.+|..+. +.-+.+++|...- .+.... ....+++.+
T Consensus 181 mQLYS~er-----------------------------------~~sQ~ieGhaa~F------~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 181 MQLYSVDR-----------------------------------KVSQPIEGHAASF------AQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp EEEEESTT-----------------------------------CCEEEECCSEEEE------EEEECTTCSSEEEEEEEE
T ss_pred EEEeeccc-----------------------------------cccchheeeeeee------EEEecCCCCCCceEEEEE
Confidence 88888776 3345556664211 111110 011234444
Q ss_pred eC---CCeEEEEEccCC---c-----eEEEec----cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 332 SS---DNSVYIYDLVSG---A-----QVAKLD----FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 332 ~~---dg~v~i~d~~~~---~-----~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.. .+.++|.++... . ....+. ...+.-.++..|+....++.-+.-|.|+++|++++..
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 33 278999998542 1 111111 1234456788888888888888899999999998754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.043 Score=46.15 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCEEEEEeCC-CcEEEEEcCCC-eeeeeeeecc-cccceEEEEEeCCCCcEEEEEec-C---------CEEEEEEcCCC
Q 015301 51 DGSFFVAASQE-SNIKVYNVDKN-WKIQKDIETK-ALRWTITDTSLSPDQRFLVYASI-C---------AIVNIVDVGSS 117 (409)
Q Consensus 51 ~~~~l~t~~~d-~~i~vw~~~~~-~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~~w~~~~~ 117 (409)
++++++.|+.+ ..+.+||.... .......... .....-..+.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56777777643 46888888631 1222221111 11111122222 5677777765 2 35888998877
Q ss_pred cccccccee-ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---------------------------------
Q 015301 118 ARESLANVT-EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------------------------------- 163 (409)
Q Consensus 118 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------- 163 (409)
+-....... .. .....++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~-------------r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 97 SWVKLMSHAPMG-------------MAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEECSCCCSSC-------------CSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred cEEECCCCCCcc-------------cccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 654433322 10 00112222 467777888753
Q ss_pred ------CeEEEEECCCCeeeeEEcCC-CCCe-EEEEEeCCCCcEEEEeeC------CCeEEEecc
Q 015301 164 ------NFIYVYDLQANKCSLRIPAH-KSDV-NTVCFADETGHLIFSGSD------DSLCKVWDR 214 (409)
Q Consensus 164 ------~~i~v~d~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~~~~~------dg~i~iwd~ 214 (409)
..+.+||..+.+....-... ...- .+++.. ++.+++.|+. ...+..||+
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999887654332111 1111 334443 5667777664 234666764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.043 Score=45.28 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=51.1
Q ss_pred cCCCCeEEEEEe----cC-------eEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-------CeEE
Q 015301 151 STDGQELVAAGS----DN-------FIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-------SLCK 210 (409)
Q Consensus 151 ~~~~~~l~~~~~----d~-------~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~ 210 (409)
..++..++.|+. ++ .+.+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 456777777773 11 277889887764332 2211111 233333 56777777754 2477
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC------CcEEEeeCCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD------QTTKLWDIRK 262 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~ 262 (409)
+||+.. .....+..+........ ++. .++++++.|+.+ ..+.+||+.+
T Consensus 131 ~yd~~~--~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 131 CYDPVA--AKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEETTT--TEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EEeCCC--CCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 777641 11111111111111111 222 356666766642 3477788765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.08 Score=48.24 Aligned_cols=334 Identities=8% Similarity=-0.016 Sum_probs=167.8
Q ss_pred cceeeEEec-CceeEeec-c-ceEEEEeeecC-CCceeecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 015301 3 VGREVNYSG-RGRFSAAD-S-CHVLSRYLPVN-GPWKVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~-dg~~~~~~-~-~~~~~~~~~~~-~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~ 77 (409)
+++.+++.| +|.+..+. + ...+.+..... ....+...-.....++++++++.|..+. ..+.|...+++.... ..
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v 202 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV 202 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE
Confidence 467888887 45544443 1 23344333322 2334444456788999999877776654 457899999876533 22
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee-ceee--------------------------
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT-EIHK-------------------------- 130 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~-------------------------- 130 (409)
...... ....+++.. +..+++-...+.|...|..+++........ ....
T Consensus 203 ~~~~l~---~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~ 278 (628)
T 4a0p_A 203 IADDLP---HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHL 278 (628)
T ss_dssp EEECCS---CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSE
T ss_pred eeccCC---CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchh
Confidence 222222 355677654 344444445677777775444321110000 0000
Q ss_pred ---------------eeeeecCCC-------------------------C---------cceeeEEEEEcCCCCeEEEEE
Q 015301 131 ---------------GLDFSADGD-------------------------E---------DEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 131 ---------------~~~~~~~~~-------------------------~---------~~~~v~~~~~~~~~~~l~~~~ 161 (409)
+..+..+.. . .-..+..++|.+....|+.+.
T Consensus 279 C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD 358 (628)
T 4a0p_A 279 CLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWID 358 (628)
T ss_dssp EEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEE
T ss_pred hhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEe
Confidence 000000000 0 001234455555444443332
Q ss_pred e-cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccc
Q 015301 162 S-DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEG 233 (409)
Q Consensus 162 ~-d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~ 233 (409)
. .+.|+.+++........+.. ....+..+++....+++.++-+..+.|.+.++. +.....+ ......
T Consensus 359 ~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-----G~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 359 SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-----GRSVGVVLKGEQDR 433 (628)
T ss_dssp TTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCEEEEEEECTTCC
T ss_pred cCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-----CCeEEEEEeCCCCc
Confidence 2 34555555443222222221 233578899984446666677778889998863 3333232 233466
Q ss_pred eeEEEEcC-CCCeEEEEeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 234 ITFIDSRR-DGRYFISNGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 234 v~~~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
...|++.| .|.++++-.... .|...++.. .....+-... .
T Consensus 434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-----------------------------------~~~~~l~~~~-l- 476 (628)
T 4a0p_A 434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDG-----------------------------------TEREVLFFSG-L- 476 (628)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEEETTS-----------------------------------CSCEEEECSS-C-
T ss_pred eeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-----------------------------------CCcEEEEecc-C-
Confidence 88999999 455444433222 455544432 1111111100 0
Q ss_pred eeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.....++++++++.|+.+.. .+.|..+++.... ...+. .......+|+... +.++.+-...+.|...|..+++
T Consensus 477 ---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 477 ---SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSS
T ss_pred ---CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCC
Confidence 11234467776666666544 5889999985433 33332 2333456777655 4455555556777777766544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.09 Score=47.90 Aligned_cols=199 Identities=8% Similarity=-0.030 Sum_probs=119.8
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~ 117 (409)
-..+..++|++.+..|. +-..++.|..++++... ........ ...+..+++.+.+..|..+ ...+.|.+.+++..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g--~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCC--CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 35688999998766655 44457889999887642 22222211 1246778888765555444 55678999998754
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
....... . .-.....+++.|....|+.+.. .+.|...++......... ..-.....+++.+.
T Consensus 113 ~~~~l~~--~-------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~ 176 (628)
T 4a0p_A 113 HRQVLVW--K-------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA 176 (628)
T ss_dssp TCEEEEC--S-------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETT
T ss_pred cEEEEEe--C-------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccc
Confidence 3221111 0 0113688999986556666543 467888887654433323 34567789999944
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.+.+.++-...+.|..+|+.. ... ..+.........+++.. +..+++-...+.|...|..++
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG----~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLG----LNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTS----CSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cCEEEEEECCCCEEEEEcCCC----Cce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 555555556678899998741 111 22333334455777764 444455445677888876544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.051 Score=45.05 Aligned_cols=236 Identities=7% Similarity=0.054 Sum_probs=117.1
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCc-ee-------ecCCCCeEEEEECCC----CCEEEEE--eCCCcEEEE
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPW-KV-------DGMNSRVYTSQFSND----GSFFVAA--SQESNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~-~l-------~~h~~~v~~~~~s~~----~~~l~t~--~~d~~i~vw 67 (409)
..+.+++.|||+.+.+.. ...+..+.+..... .+ ....+....|+|+|+ +.+.++- ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999999877755 44444443322221 11 223466889999995 4433432 234556666
Q ss_pred EcCCC----------eeeeeeee-cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcccccc
Q 015301 68 NVDKN----------WKIQKDIE-TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLA 123 (409)
Q Consensus 68 ~~~~~----------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~ 123 (409)
.+..+ +.+..... ...| ....|+|.|||.+.++.+. .|.|.-.+.+..-.. -.
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~-~n 189 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP-GN 189 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT-TC
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC-CC
Confidence 66541 11111111 1223 3467999999987776542 234433343321000 00
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCe------------------eeeEEcCCC
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANK------------------CSLRIPAHK 184 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~------------------~~~~~~~~~ 184 (409)
.... .. .+. .++. ....++|+|+|.+.++=. .++.-.|-.+..+. ++..+..+.
T Consensus 190 Pf~~--~~-i~a---~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 190 PFPG--SP-VYS---YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SSTT--CC-EEE---BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCCC--Ce-EEe---eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0000 00 000 0111 356789999876544321 12212222222221 122233222
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
.....++|. ++.+++..-..+.|....+............+.+....+..+...|||.++++..
T Consensus 263 ~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 466788887 4666666666666666665311111122223334456788999999998666543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0067 Score=46.01 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=61.9
Q ss_pred cceeeEEecCceeEeeccceEEEEeee-cCCCceeecCCCCe--------EEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLP-VNGPWKVDGMNSRV--------YTSQFSNDGSFFVAASQESNIKVYNVDKNW 73 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v--------~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~ 73 (409)
+...++|+|||...+..+.. +.+.-+ ........+-...| .++.|.|+|.+.++ .||.|+-++-.+..
T Consensus 42 ~~~~laf~P~G~LYaV~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGVLNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEEETTE-EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEEeCCe-EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 34679999999876664433 333333 32223322223334 78999999998887 56888877754321
Q ss_pred eee-----eeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 74 KIQ-----KDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 74 ~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
... ......+ =..+..+.|.|+|.+.++. |+.++-
T Consensus 119 ~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 119 TDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCceeccccEeccCC-CCceEEEEECCCceEEEEe--CCcEEe
Confidence 110 1111101 1257999999999888777 777543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.1 Score=47.52 Aligned_cols=198 Identities=8% Similarity=-0.029 Sum_probs=109.4
Q ss_pred eeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+.+++|.+.+..|+.+. ..+.|..+++........+...-..+..+++.+..++++++-+..+.|.+.++. +.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~-----G~ 424 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN-----GT 424 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SC
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC-----CC
Confidence 367899998655666554 467899999875444333443345678899984466777776778899999864 22
Q ss_pred eeeee-eccccceeEEEEcCCCCeEEEEeC--CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 223 ANGVL-MGHLEGITFIDSRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 223 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
....+ ...-.....+++.|....|..... ...|...++... .
T Consensus 425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~-----------------------------------~ 469 (619)
T 3s94_A 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS-----------------------------------D 469 (619)
T ss_dssp SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----------------------------------S
T ss_pred eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC-----------------------------------c
Confidence 22222 223456789999986444444432 345555554431 1
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCe
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 378 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 378 (409)
...+... .. .....++++++++.|+.+. ..+.|..+++........+...-....+|+...+ .+.++-...+.
T Consensus 470 ~~~l~~~-~l----~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~ 543 (619)
T 3s94_A 470 RVVLVNT-SL----GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRS 543 (619)
T ss_dssp CEEEECS-SC----SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSC
T ss_pred cEEEEeC-CC----CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCe
Confidence 1111100 00 1122446776565665554 4578888888544332222222223345665443 33334344566
Q ss_pred EEEEecCCC
Q 015301 379 IVRWEIPGI 387 (409)
Q Consensus 379 i~iw~~~~~ 387 (409)
|..-+..++
T Consensus 544 I~~~~k~~g 552 (619)
T 3s94_A 544 IERVHKRSA 552 (619)
T ss_dssp EEEEESSSC
T ss_pred EEEEEcCCC
Confidence 666666554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.056 Score=44.53 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----CC-------EEEEEEcCCCccccc
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CA-------IVNIVDVGSSARESL 122 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~~w~~~~~~~~~~ 122 (409)
+++.|+. .+..||..++.-........... .-.++ ...++..++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r-~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR-NHSSI-VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCS-SEEEE-ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCc-cceEE-EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4455543 38899988774322211111111 11222 3456778888873 12 277788877665433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-------CeEEEEECCCCeeeeEE--cCCCCCeEEEEEe
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------NFIYVYDLQANKCSLRI--PAHKSDVNTVCFA 193 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~ 193 (409)
....... . ....+.+ +++.++.|+.+ ..+.+||..+.+....- +..... .+++.
T Consensus 94 ~~~p~~r---------~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~- 156 (318)
T 2woz_A 94 PPLPSAR---------C----LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS- 156 (318)
T ss_dssp SCBSSCB---------C----SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-
T ss_pred CCCCccc---------c----ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-
Confidence 2221111 0 1112222 66777777764 35888999877654321 111111 12222
Q ss_pred CCCCcEEEEeeC------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCC
Q 015301 194 DETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 262 (409)
Q Consensus 194 ~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 262 (409)
.++.+++.|+. -..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKK--GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCC--CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 35677777764 23588888651 111222111111111122222 567777776532 466777765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.055 Score=45.45 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCeEEEEEe-c---------CeEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCC
Q 015301 153 DGQELVAAGS-D---------NFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 153 ~~~~l~~~~~-d---------~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
+++.++.|+. + ..+.+||..+.+....-... .......+.. .++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5677777766 2 46889999887644322111 1111111122 357777888754
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.09 Score=46.06 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=138.9
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeeccccc----------------------ceE--EEEEeC---CCCcEEEEEe-cC
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKALR----------------------WTI--TDTSLS---PDQRFLVYAS-IC 106 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v--~~~~~s---~~~~~l~~~~-~d 106 (409)
+.+|+..|.|+|+-+.++..+..+-.+.... +.. ..+.+. -||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999886665533221100 000 122332 2577888776 45
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEe-------cCe------------
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGS-------DNF------------ 165 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~------------ 165 (409)
..|...+++..++.....+.... .+..++|- |+..|+++++. ||.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~--------------~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ--------------AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS--------------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCc--------------CcccccccccCCccEEEecceeeccCCCCCcccccCChhhceE
Confidence 67888888887766555544332 46666665 56666666654 222
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC---------------eEEEeccccc----------ccC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS---------------LCKVWDRRCF----------ISK 220 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~----------~~~ 220 (409)
....|..+.+....+.. .+....+... +++.+.++.+.+. .+.++++... ...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~-~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDAD-YTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCC-CCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 11123333333222211 1122222333 4455555544321 2444443210 000
Q ss_pred ---------------CceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccccccccccccccccccccc
Q 015301 221 ---------------GRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 221 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
+.....+..-......+..+|||+++++++. +.++.++|+++........
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-------------- 362 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-------------- 362 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC--------------
T ss_pred CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc--------------
Confidence 0111111122234567889999999887765 7899999998632110000
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC----------ceEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------AQVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----------~~~~~~~~~ 354 (409)
+..+........+. . ......+|+++|....+-..|..|.-|++... ..+..+..|
T Consensus 363 -------~~~~~~~~~ae~e~---G----lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~ 428 (638)
T 3sbq_A 363 -------LADPRDVIVGEPEL---G----LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH 428 (638)
T ss_dssp -------CSCGGGGEEECCBC---C----SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred -------ccCcccceEeeccC---C----CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc
Confidence 00000000001100 0 11234478888966666678999999999754 345555544
Q ss_pred Ccceeee-----EEecCcCeEEee
Q 015301 355 NAPVRDC-----CWHPIYPMLISS 373 (409)
Q Consensus 355 ~~~v~~~-----~~s~~~~~l~s~ 373 (409)
..+-.-. .-.+||++|++.
T Consensus 429 YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 429 YQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp SCEEEEEETTTTSTTCCSCEEEEE
T ss_pred cCCcccccCCCccCCCCccEEEEe
Confidence 3322111 124566666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.071 Score=44.69 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEe-
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGS- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~- 162 (409)
....++|.|++++++ +..+|.|++++. +++ ....... ...........++++|+ +..|+++..
T Consensus 30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~----------v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV-TERPGRLVLISP-SGK-KLVASFD----------VANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEECS-SCE-EEEEECC----------CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc-eEeeccc----------eeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 478899999998544 566699998873 332 1111110 00011225789999997 555555543
Q ss_pred ---c----CeEEEEECCCC-------eee-eEEcC-CCCCeEEEEEeCCCCcEEEEee
Q 015301 163 ---D----NFIYVYDLQAN-------KCS-LRIPA-HKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 163 ---d----~~i~v~d~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+ ..|..++.... +.+ ..+.. .......++|. +++.++++.+
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G 153 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTG 153 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECC
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEEC
Confidence 2 57888887644 111 11221 11234679999 7888777643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.074 Score=44.58 Aligned_cols=234 Identities=7% Similarity=-0.023 Sum_probs=115.0
Q ss_pred cceeeEEecCce-eEeeccceEEEEeeecCCCc--------eeecCCCCeEEEEECCC---CCEEEEE-eC-------CC
Q 015301 3 VGREVNYSGRGR-FSAADSCHVLSRYLPVNGPW--------KVDGMNSRVYTSQFSND---GSFFVAA-SQ-------ES 62 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~--------~l~~h~~~v~~~~~s~~---~~~l~t~-~~-------d~ 62 (409)
.++.+++.|||+ ++.+.....+..+.+..... ......+....++|+|+ +..|..+ .. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999 76665444444443221110 11122346789999996 4444433 22 23
Q ss_pred cEEEEEcCCCe----eeeeeee-c-----ccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcc
Q 015301 63 NIKVYNVDKNW----KIQKDIE-T-----KALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSAR 119 (409)
Q Consensus 63 ~i~vw~~~~~~----~~~~~~~-~-----~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~ 119 (409)
.|..|+++... ....... . ..| ....++|.|||.+.++.+. .|.|.-++.+..-.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 46666665331 1111111 1 122 2457999999966665433 24566666543210
Q ss_pred cccccee--ceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecC--eEEEEECCCCe-------------------
Q 015301 120 ESLANVT--EIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDN--FIYVYDLQANK------------------- 175 (409)
Q Consensus 120 ~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~--~i~v~d~~~~~------------------- 175 (409)
....-.. .....+ +.. ++ .....++|.| ++. |.++.... .=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i-~a~---G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 177 DDNPFIKESGVRAEI-WSY---GI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTCTTTTSTTSCTTE-EEE---CC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCcCCCCCCccE-EEE---cC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 0000000 000000 000 11 1378899999 554 54443321 11222111111
Q ss_pred ------------eeeEEcCCCCCeEEEEEeC------CCCcEEEEeeCCCeEEEecccccccCCceeee---eeccccce
Q 015301 176 ------------CSLRIPAHKSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRANGV---LMGHLEGI 234 (409)
Q Consensus 176 ------------~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~v 234 (409)
++..+. +...+..++|.. .++.++++....+.|...++. .+..... +......+
T Consensus 251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCE
T ss_pred cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCce
Confidence 111222 234567788862 146677776677778777764 2222111 11223478
Q ss_pred eEEEEcCCCCeEEEE
Q 015301 235 TFIDSRRDGRYFISN 249 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~ 249 (409)
..+++.|||.++++.
T Consensus 326 ~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEE
Confidence 899999999866643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.082 Score=44.30 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEE---eccCCcceeeeEEecCcCeEEee-cCCCeEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK---LDFHNAPVRDCCWHPIYPMLISS-SWDCNIV 380 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~ 380 (409)
+|+++++.-..+.|...++..++.... +......+..+++.|||.++++. ..+|.|+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 477777777788888888876654332 22233578999999999866543 3455443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=42.38 Aligned_cols=102 Identities=12% Similarity=0.201 Sum_probs=57.6
Q ss_pred EEEcCCCCeEEEEEec--------------CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEE
Q 015301 148 VKFSTDGQELVAAGSD--------------NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKV 211 (409)
Q Consensus 148 ~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i 211 (409)
--+++++.+|+.+... ..|+..++...+... +. ... ...++ ++++.|+-.. .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s-~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYAS-LIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEE-EETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEE-EeCCEEEEEeecCCCCceE
Confidence 3457788888877653 467888887665333 32 122 22566 4666776655 3455555
Q ss_pred ecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 212 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
|.+.. .+.....+..+.. ..++++++.|.-.+. ...|...++..
T Consensus 132 y~~~~---dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 132 YRIRI---DGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEET---TSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEC---CCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 55431 2333333433322 346777888776654 55677777654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.12 Score=42.68 Aligned_cols=193 Identities=8% Similarity=0.026 Sum_probs=98.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--CC-CCcEEEEE-ecCCEEEEEEcCCCccccccceece
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SP-DQRFLVYA-SICAIVNIVDVGSSARESLANVTEI 128 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--s~-~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (409)
.+++.++.||.|.-.|.++++........ ...++....- .+ ++..++.. +.||.|..++..++...........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 46888899999999999998766654332 1012211110 01 23334443 5799999999887744322221111
Q ss_pred eeeeeeecCCCCcceeeEE---EEE-----cCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC--CC-----eEEEEEe
Q 015301 129 HKGLDFSADGDEDEFGIFS---VKF-----STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK--SD-----VNTVCFA 193 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~-----v~~~~~~ 193 (409)
.. ..++.. ... ...+..+++|+.+|.+...|+.+|+.+..+.... .. ..|....
T Consensus 89 v~-----------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~ 157 (339)
T 2be1_A 89 VS-----------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE 157 (339)
T ss_dssp HT-----------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred ee-----------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence 00 001110 000 0134578899999999999999999998885321 10 0111110
Q ss_pred ----CCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----cccc--ce-eEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 194 ----DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLE--GI-TFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 194 ----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+..++.+..+..+.+.+ + .+. ..... .... ++ ..-..+.++.+ +.++.||.|..+|..
T Consensus 158 d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 158 KIKLQECENMIVIGKTIFELGIHS-Y----DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp -------CCEEEEEEEEEECEECC-T----TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred ccccccCCCeEEEecceEEEEEEC-C----CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 01235677776666666655 2 121 11110 0000 00 00001224555 446788888888877
Q ss_pred CCcc
Q 015301 262 KMSS 265 (409)
Q Consensus 262 ~~~~ 265 (409)
++..
T Consensus 231 ~G~~ 234 (339)
T 2be1_A 231 FRIA 234 (339)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 6554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.13 Score=50.67 Aligned_cols=220 Identities=9% Similarity=0.043 Sum_probs=128.1
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
..+|.|.|+.++.......+ ..-+.-.+|..+.++.-. ..++.|+|+++...+....- ..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (1630)
T ss_pred CceEEEEECCCCCCcccccc------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence 34788889887654322211 123345677777666554 68999999998887776654 45
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc----ccceeEEEEcCCCCeEEEEe-------CCCc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGITFIDSRRDGRYFISNG-------KDQT 254 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~ 254 (409)
+|.-=.|. +.+.|+..+ +..|..|++.. ...+.+.+..| ...|..-..+++.++++..| -.|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 67777887 444555544 45799999842 34444445444 35677777788888876544 3477
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 333 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 333 (409)
+.+|..+... -+.++||...-..... ....+...+++.+..
T Consensus 181 mQLyS~er~~-----------------------------------sQ~iegha~~F~~~~~---~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 181 MQLYSVDRKV-----------------------------------SQPIEGHAASFAQFKM---EGNAEESTLFCFAVRG 222 (1630)
T ss_pred eeeeeccccc-----------------------------------chhhhHhHhhhheecc---CCCCCCceEEEEEEec
Confidence 8888877622 2233333311100000 000011122222222
Q ss_pred --CCeEEEEEccCC---ceEE------Eec---cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 334 --DNSVYIYDLVSG---AQVA------KLD---FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 334 --dg~v~i~d~~~~---~~~~------~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+.++|.++... .+.. .+- .......++..++....+...+.-|.|.++|+.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 268888888542 1111 111 1123345677777777777778889999999998754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.25 Score=45.72 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=83.1
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCCeeeeeeee-----cccccceEEEEEeCCCCcEEEEEecC------CEEEEEEc
Q 015301 50 NDGSFFVAASQE----SNIKVYNVDKNWKIQKDIE-----TKALRWTITDTSLSPDQRFLVYASIC------AIVNIVDV 114 (409)
Q Consensus 50 ~~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~~w~~ 114 (409)
.++.+++.|+.+ ..+.+||..++.-...... .......-..+.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467778888753 4688899877632211101 11111112233333267788888743 35788888
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEE-----cCCCCCe
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRI-----PAHKSDV 187 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~-----~~~~~~v 187 (409)
.+.+........... .-.+++...+++.++.|+.++ .+.+||..+.+....- +......
T Consensus 476 ~t~~W~~~~~~p~~R--------------~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR--------------FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp TTTEEEECCCCSBCC--------------BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred CCCcEEECCCCCCCc--------------ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence 876544332221111 112233324788888887654 6999999887654321 1122222
Q ss_pred EEEEEeCCCCcEEEEeeC--C-----CeEEEeccc
Q 015301 188 NTVCFADETGHLIFSGSD--D-----SLCKVWDRR 215 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~--d-----g~i~iwd~~ 215 (409)
.++.+....+.+++.|+. + ..+.+||+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc
Confidence 345555233677777775 2 458888875
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.3 Score=45.21 Aligned_cols=156 Identities=8% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCcEEEEEecC----CEEEEEEcCCCcccccc-ceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEec-----
Q 015301 95 PDQRFLVYASIC----AIVNIVDVGSSARESLA-NVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSD----- 163 (409)
Q Consensus 95 ~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d----- 163 (409)
.++..++.|+.+ ..+.+||..+.+..... ..... ...... .-.+++..+ +++.++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--------~~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS--------EVPVAR-MCHTFTTISRNNQLLLIGGRKAPHQG 466 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS--------CCCCCC-BSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC--------CCCccc-cceEEEEEccCCEEEEEcCCCCCCCc
Confidence 456777777753 35778888776543322 10000 000000 112233333 67777777753
Q ss_pred -CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEecccccccCCceeee---eecccccee
Q 015301 164 -NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCFISKGRANGV---LMGHLEGIT 235 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~---~~~~~~~v~ 235 (409)
..+.+||..+.+.... ++..... .+++.. .++.+++.|+.++ .+.+||+.. .....+.. .........
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~ 542 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRFR-HSACSL-PDGNVLILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFFQNSLVSA 542 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCBS-CEEEEC-TTSCEEEECCBCSSCSEEEEETTT--TEEEECCCSSGGGGSCCBSC
T ss_pred cccEEEEeCCCCcEEECCCCCCCccc-ceEEEE-cCCEEEEECCCCCCCCEEEEECCC--CceEEccCCCCCCCccccee
Confidence 3588999988654332 2211111 223332 3678888887655 688888652 11111111 111112223
Q ss_pred EEEEcCC-CCeEEEEeC--C-----CcEEEeeCCCC
Q 015301 236 FIDSRRD-GRYFISNGK--D-----QTTKLWDIRKM 263 (409)
Q Consensus 236 ~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~ 263 (409)
++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3455544 666777765 2 35778887763
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.17 Score=38.53 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=83.3
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.+..++|+|++.+.++ .+|.+.-.+..+.....-... ...-+ .. + -..-.++.|.|+|.+.++ .||.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG----~~--G-w~~F~a~~fD~~G~LYav--~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIG----NG--G-WNQFQFLFFDPNGYLYAV--SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEE----CS--C-GGGCSEEEECTTSCEEEE--ETTEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEec----cc--c-cccceEEEECCCCCEEEe--CCCEE
Confidence 5779999999987776 678766655544322211111 00000 00 0 001377899999987766 67999
Q ss_pred EEEECCCCeee-------eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc----eeeeee-ccccce
Q 015301 167 YVYDLQANKCS-------LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR----ANGVLM-GHLEGI 234 (409)
Q Consensus 167 ~v~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~-~~~~~v 234 (409)
+-++-.+.... ..-..--..+..+.+. |++.+.++. |+.++-.... ..... ....+- ..-...
T Consensus 110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P--~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPP--VSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCC--SSTTCCHHHHCEEEESSSGGGE
T ss_pred EEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCC--CCCCcccccccceeccCCcceE
Confidence 88876432111 1112222567888998 888877766 7775433211 00100 011111 222344
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
..+.|.+++.+.++. +| ++|...
T Consensus 185 r~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp EEEEECTTSCEEEEE--TT--EEEEES
T ss_pred EEEEECCCCcEEEEe--CC--eEEecC
Confidence 557799988876665 66 444443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.5 Score=41.09 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEe-
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGS- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~- 162 (409)
....|+|.|+|+++++-...+.|++++..++............ ...........++|+|+ +..|.++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-------~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-------NDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-------CCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc-------cccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 4679999999987776554457888876544332211111100 00011335789999995 555555543
Q ss_pred ------------cCeEEEEECCCC-------eeee-EEcC-CCCCeEEEEEeCCCCcEEEEee
Q 015301 163 ------------DNFIYVYDLQAN-------KCSL-RIPA-HKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 163 ------------d~~i~v~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
...|.-+++..+ +.+. .+.. .......|+|. +++.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence 235666665322 1111 1221 12346899999 7888777654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.51 Score=38.95 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=66.0
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCC-CCCeEEEEEe--CCCCcEEEEe-eCCCeEEEecccccccCCceeeeeec-
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAH-KSDVNTVCFA--DETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMG- 229 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~- 229 (409)
..+++++.||.|.-+|.++|+.+.+++.. ..++....-. +.++..++.. +.||.+..++.. .+.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~----~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH----QGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT----TEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC----CCcEEeeeccc
Confidence 36888999999999999999999888653 1233222111 0122344343 589999999854 3322222211
Q ss_pred ---cccceeE---EEE-c----CCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 230 ---HLEGITF---IDS-R----RDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 230 ---~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
...++.. ... . ..+..+++++.+|.+...|+++++......
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1111111 000 0 035578889999999999999877655443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.68 Score=40.27 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc------cccceEEEEEeCCC---CcEEEEEec-----
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK------ALRWTITDTSLSPD---QRFLVYASI----- 105 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~---~~~l~~~~~----- 105 (409)
-.....|+|.|+|+++++-...+.|++++..++.. ....... ........|+|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34577999999999777654445788887654422 2211111 12346789999996 555554432
Q ss_pred --------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 106 --------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 106 --------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
...|.-++....... ......-+...+....| ....++|.|+|.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~----~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDT----LEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTE----EEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCC----cCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEECC
Confidence 234555555432110 00000001111111223 4788999999987776553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.42 E-value=1.8 Score=40.67 Aligned_cols=284 Identities=8% Similarity=-0.015 Sum_probs=145.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.|.++...+++..|..|... -+..++..++.. ...... ....|.++...+++.+.+ |+. +-+.+++..+.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEE-EEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEE
T ss_pred eeEEEEEECCCCEEEEEECC-CCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEE
Confidence 48889888777755555543 488888876632 222111 123688888888887665 444 457788876654321
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc-------CCCCCeEEEEEeC
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVCFAD 194 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~ 194 (409)
........ ..-....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-.
T Consensus 266 ~~~~~~~~--------~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D- 332 (758)
T 3ott_A 266 IIHDSRNI--------QSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRD- 332 (758)
T ss_dssp ECCCTTCT--------TSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEEC-
T ss_pred EEcCCCCc--------CcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEc-
Confidence 11100000 001122588888877776 55566666 5544332 21 11111 123457888776
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeee-------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.++++.+ |+.+| +..++... ........+. .....|.++.-..+|++. .|. ++-|..||..+...
T Consensus 333 ~~g~lWi-Gt~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~-- 404 (758)
T 3ott_A 333 SKGFYWF-GGANG-LIRFTDPA--GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQF-- 404 (758)
T ss_dssp TTCCEEE-EETTE-EEEESCTT--SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEE--
T ss_pred CCCCEEE-eeCCc-ceeecccc--cccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcE--
Confidence 5565544 45555 55565321 0001111111 112457888877777644 455 45688898765221
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG- 345 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~- 345 (409)
..+..... .......+.++..+++|. |-.|+..+-+.++|..+.
T Consensus 405 ---------------------------------~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~ 450 (758)
T 3ott_A 405 ---------------------------------IHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLM 450 (758)
T ss_dssp ---------------------------------EEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHH
T ss_pred ---------------------------------EEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccccc
Confidence 11110000 000001123333444554 555666666888886531
Q ss_pred ----ceE---EEec---c-CCcceeeeEEecCcCeEEe-ecCCCeEEEEecCCC
Q 015301 346 ----AQV---AKLD---F-HNAPVRDCCWHPIYPMLIS-SSWDCNIVRWEIPGI 387 (409)
Q Consensus 346 ----~~~---~~~~---~-~~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~ 387 (409)
... ..+. + ....|.++...+++.+.+. ++. +-|..+|..+.
T Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~-~Gl~~~d~~~~ 503 (758)
T 3ott_A 451 QSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN-KGIDKINPRTR 503 (758)
T ss_dssp HCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC-SSEEEEETTTT
T ss_pred ccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC-CCcEEEeCCCC
Confidence 111 1111 1 1235888888888886653 444 44777887543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.29 E-value=1.1 Score=37.28 Aligned_cols=253 Identities=16% Similarity=0.114 Sum_probs=120.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEE--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAG-- 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-- 161 (409)
....|+|.|+|.++++-...|.|++++..+++......... ...........++++|+ +..|.+..
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~---------v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG---------VSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT---------CCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc---------eeecCCCCceeeEeccccccCCEEEEEEec
Confidence 47899999999877766558999998865544321111100 00112335889999995 34454432
Q ss_pred -ecCeEEEEECCCC----------eeee-EEcC-CCCCeEEEEEeCCCCcEEEEeeC-------------CCeEEEeccc
Q 015301 162 -SDNFIYVYDLQAN----------KCSL-RIPA-HKSDVNTVCFADETGHLIFSGSD-------------DSLCKVWDRR 215 (409)
Q Consensus 162 -~d~~i~v~d~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~ 215 (409)
.++.|.-|.+..+ +.+. .+.. .......|+|. +++.++++.+. .|.|.-.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 3456666665541 1111 2221 11234679998 78887777542 2444444432
Q ss_pred ccccCC----ceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 216 CFISKG----RANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 216 ~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...... .......+|. ....++|+|+|.++++-. .|+.=.|--+.. -..+.|....-. ..
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~----------G~nyGwP~~~g~--~~-- 247 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKP----------GDNYGWPEAEGK--GG-- 247 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECT----------TCBCCTTTCCSS--CC--
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcC----------CCEecCCcccCC--CC--
Confidence 100000 0011112333 356788999877555432 232111111111 111112111000 00
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce----EEEeccCCcceeeeEEecC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ----VAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~ 366 (409)
......++..+..+. .....+ +|. +|.++...-..+.|....+..... ...+.+....+.+++..||
T Consensus 248 --~~~~~~P~~~~~~~~--~ap~G~----~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 248 --GSGFHDPVAQWSTDE--ASPSGI----AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp --CTTCCCCSEEECTTT--CCEEEE----EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred --CccccCCcEecCCCC--CCCcce----EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence 000011222222211 011111 222 355666555566676666654432 2334444568899999999
Q ss_pred cCeEEee
Q 015301 367 YPMLISS 373 (409)
Q Consensus 367 ~~~l~s~ 373 (409)
|.++++.
T Consensus 319 G~lyv~t 325 (347)
T 3das_A 319 DKLWLVT 325 (347)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 9855554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.08 E-value=1.1 Score=36.41 Aligned_cols=172 Identities=9% Similarity=0.082 Sum_probs=90.6
Q ss_pred CCCCCEEEEEe--CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC--------------CEEEEE
Q 015301 49 SNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------------AIVNIV 112 (409)
Q Consensus 49 s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~~w 112 (409)
+++|.++.... .++.|+..+.+.. ...++.. -.+--+++++.+|..+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 45677776654 2455666665543 2222211 1123457889888877643 367777
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE----ecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG----SDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
++...+...+.. -....|+++++.|+... ....|...++.... ...+..+..
T Consensus 94 ~~dg~~~~~l~~--------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~--- 149 (302)
T 3s25_A 94 KRNGHGSTVLDP--------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL--- 149 (302)
T ss_dssp ETTSCCCEEEEC--------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC---
T ss_pred eCCCCcceEeec--------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc---
Confidence 776664322211 11235777888888775 24567777776443 334443332
Q ss_pred EEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 262 (409)
..++ ++++.|+-.+. ...|..-++. ... ...+.. +... ..+.|++.+|+-...++ .|..-++..
T Consensus 150 -~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 -FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp -CCSE-EETTEEEEECTTTCCEEEEETT----TTE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred -eEee-EECCEEEEEeCCCceEEEEECC----CCC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3455 44555554443 5667777653 222 222221 2222 23558888887665443 455555543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.62 E-value=1.4 Score=38.85 Aligned_cols=114 Identities=10% Similarity=0.168 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
....+..+|||+++++++ .+.++.++|++.-.......+......+.-.. .-.......+|.++|....+.--|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecce
Confidence 456788999999998876 57789999997532211100000000000000 01225788999999954444446999
Q ss_pred EEEEECCCC----------eeeeEEcCCCCCeEEEEEe-----CCCCcEEEEee
Q 015301 166 IYVYDLQAN----------KCSLRIPAHKSDVNTVCFA-----DETGHLIFSGS 204 (409)
Q Consensus 166 i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~ 204 (409)
|.-|++... ..+.++..|-.+ -.+.-+ .+++++|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999998653 345556555433 233221 26788888865
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.72 E-value=4.3 Score=32.53 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=97.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|..++...+-. ++. . ||.|+.|-.....++...... ...|..++...+-. ++ -. +|.|..|-.......
T Consensus 63 ~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs-~a-l~-~G~v~~wG~n~~gql 133 (282)
T 3qhy_B 63 SGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS-YA-LK-DGKVIAWGDDSDGQT 133 (282)
T ss_dssp SCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE-EE-EE-TTEEEEEECCTTSTT
T ss_pred CCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE-EE-Ee-CCeEEEecCCCCCcC
Confidence 3577777654433 333 4 899999986654332221111 23577777654433 22 34 899999976543322
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..... ....|..++...+. .+.-. ||.|+.|-......+..-..-...|..++.- ....+
T Consensus 134 g~~~~---------------~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 134 TVPAE---------------AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp SCCGG---------------GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCCcc---------------CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 11110 01136666654333 22233 7999999765422221111123567777765 33344
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+. .||.|..|-.....+.+.+ ......|..++...... ++ .. ||.+..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~h~-~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVP----TEALSGVSAIASGEWYS-LA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCC----GGGGSSCCEEEECSSCE-EE-EE-TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCC----cccCCCceEEEcCCCEE-EE-EE-CCEEEEecCCC
Confidence 44 5999999975321111111 11234577777654433 33 33 99999997655
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.39 E-value=5.2 Score=32.85 Aligned_cols=210 Identities=8% Similarity=0.045 Sum_probs=112.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEE---cCCC------eeeeeeeecccccceEEEE-EeCC--CCcEEEEEecCCE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYN---VDKN------WKIQKDIETKALRWTITDT-SLSP--DQRFLVYASICAI 108 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~---~~~~------~~~~~~~~~~~~~~~v~~~-~~s~--~~~~l~~~~~dg~ 108 (409)
+.+..+........|+.-+..|.++-.. +... ..+...+.... ...|.++ ...+ +..++++++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3444444444455565556667655443 3322 12112222222 2245544 4442 5789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC--CCe---------ee
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ--ANK---------CS 177 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~~~---------~~ 177 (409)
++--.+..-..... .....+.+.. ...+..+........++..+..|.+..+... .-. ..
T Consensus 121 iKr~~l~~~~~~~r----~G~~~i~lke-----~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 121 VKKSKLTDFDSNRS----GGIVAVNLRD-----NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEEGGGGCCCCS----SCEESCBCCT-----TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEEeEHHHhhcccc----CceEEEEECC-----CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 99888765332211 0011111111 1135555555555678888889998888776 211 11
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----CceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
..+. ....|.++... +.+..++..+..|.++.-.+..+... +.....+....+.+..+....+...++..+.+
T Consensus 192 i~L~-~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRFN-IDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCCC-TTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecCC-CCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 1222 34567777766 45568888899999998876533221 11222222213344444444445567777778
Q ss_pred CcEEEeeCCC
Q 015301 253 QTTKLWDIRK 262 (409)
Q Consensus 253 g~i~iwd~~~ 262 (409)
|.+.-++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8877777654
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=90.96 E-value=9.9 Score=35.26 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=98.1
Q ss_pred eEEEE-ECCCCCEEEEE-e----CCCcEEEEEcCCCeeeeeeeecccccc------eEEEEEeCCCCcEEEEE-------
Q 015301 43 VYTSQ-FSNDGSFFVAA-S----QESNIKVYNVDKNWKIQKDIETKALRW------TITDTSLSPDQRFLVYA------- 103 (409)
Q Consensus 43 v~~~~-~s~~~~~l~t~-~----~d~~i~vw~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~------- 103 (409)
...+. ++|++++++.+ | +-..++++|+.+++.+...+. ...+. ....++|..++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 44455 89999987754 2 224699999999855533222 11100 11234676444444432
Q ss_pred ---ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe-----EEEEEe---cCeEEEEECC
Q 015301 104 ---SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE-----LVAAGS---DNFIYVYDLQ 172 (409)
Q Consensus 104 ---~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~---d~~i~v~d~~ 172 (409)
+....|+.|.+.+............. . . --.....++++++ +++.+. ...+.+.+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~---------~--~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPK---------E--Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCT---------T--S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCC---------C--c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 12346888888766433222211111 0 1 1223445566653 333331 2456676765
Q ss_pred C--CeeeeEEcCCCCCeEEEEEeCCCCcEEEEe----------eCCCeEEEecccccccC---Cceeee-e-ecccccee
Q 015301 173 A--NKCSLRIPAHKSDVNTVCFADETGHLIFSG----------SDDSLCKVWDRRCFISK---GRANGV-L-MGHLEGIT 235 (409)
Q Consensus 173 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~---~~~~~~-~-~~~~~~v~ 235 (409)
. ++. ..+..... ..+..+ .++.+++.. ...+.|...|+...... ...... + ......+.
T Consensus 278 ~~~~~~-~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 278 YKNLKL-QKINMPSD--ATLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSSCEE-EECCSCTT--CEEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCCcc-eEeecCCc--ceEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 3 332 22322222 122233 345555532 14677888887632110 111222 2 22334677
Q ss_pred EEEEcCCCCeEEEEeCCCc--EEEeeCCC
Q 015301 236 FIDSRRDGRYFISNGKDQT--TKLWDIRK 262 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~--i~iwd~~~ 262 (409)
.+.+..+ .++++...++. +.++|+.+
T Consensus 354 ~~~~~~~-~l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 354 FISTTKD-RVFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp EEEECSS-CEEEEEEETTEEEEEEECEET
T ss_pred EEEEECC-EEEEEEEECCEEEEEEEECCC
Confidence 8888865 56666666664 56666543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.45 E-value=10 Score=33.03 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe---eeeeeee--cc----cccceEEEEEeCCC----CcEEEEEec-
Q 015301 41 SRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNW---KIQKDIE--TK----ALRWTITDTSLSPD----QRFLVYASI- 105 (409)
Q Consensus 41 ~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~---~~~~~~~--~~----~~~~~v~~~~~s~~----~~~l~~~~~- 105 (409)
..-+.|+|.|||+ .|+++...|.|++++.+... .+..+.. .. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 45556678999999754321 1111100 00 11346789999996 333333221
Q ss_pred -C----------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 106 -C----------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 106 -d----------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
+ ..|.-|.+....... ........-+.+......|. -..++|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence 1 145456665321100 00000001111222223343 578999999987776654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.81 E-value=10 Score=32.13 Aligned_cols=166 Identities=9% Similarity=0.002 Sum_probs=75.6
Q ss_pred CCCeEEEEECC--CCCEEEEEeCCCc--EEEEEc-CCCeeeeeeee---ccc--------ccceEEEEEeCCC--CcEEE
Q 015301 40 NSRVYTSQFSN--DGSFFVAASQESN--IKVYNV-DKNWKIQKDIE---TKA--------LRWTITDTSLSPD--QRFLV 101 (409)
Q Consensus 40 ~~~v~~~~~s~--~~~~l~t~~~d~~--i~vw~~-~~~~~~~~~~~---~~~--------~~~~v~~~~~s~~--~~~l~ 101 (409)
...|.+|++.| ++.+++.+ ..|. -.||.. +.+........ ... ....|.++++.|. ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45699999998 55555444 3330 123333 33322222111 010 1125888999872 45566
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeec---CCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeee
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSA---DGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
++...+.|...+-...................+.. ........+.++.+.|. ...++++..++.|...+- .++.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence 66656655443222211111110000000000000 00011225888999883 455666665555554432 22221
Q ss_pred eEEcC-----C--------CCCeEEEEEeCCCCcEEEEeeCCC
Q 015301 178 LRIPA-----H--------KSDVNTVCFADETGHLIFSGSDDS 207 (409)
Q Consensus 178 ~~~~~-----~--------~~~v~~~~~~~~~~~~l~~~~~dg 207 (409)
..+.. + ...+.++++.|.++..|+++...+
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 11110 0 124889999865567777776655
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.51 E-value=8.3 Score=30.86 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|..++.... ..++. . ||.|..|-............ ....|..++...+.. ++. . ||.|
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~---------------~~~~i~~ia~G~~hs-~~l-~-~G~v 83 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAA---------------TQSGVDAIAAGNYHS-LAL-K-DGEV 83 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGG---------------GGSCCCEEEECSSEE-EEE-E-TTEE
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCcc---------------CCCCEEEEEeCCCEE-EEE-E-CCEE
Confidence 4666666543 23333 4 89999997655432221110 011466666654432 333 4 8999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
+.|-....-.+..-..-...|..++.. .+ ..+.-. ||.|..|-... .++. .........|..++...+. .
T Consensus 84 ~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~~--hs~al~-~G~v~~wG~n~---~gql-g~~~~~~~~i~~i~~G~~~--~ 153 (282)
T 3qhy_B 84 IAWGGNEDGQTTVPAEARSGVDAIAAG-AW--ASYALK-DGKVIAWGDDS---DGQT-TVPAEAQSGVTALDGGVYT--A 153 (282)
T ss_dssp EEEECCTTSTTCCCGGGSSSEEEEEEE-TT--EEEEEE-TTEEEEEECCT---TSTT-SCCGGGGSSEEEEEECSSE--E
T ss_pred EEeeCCCCCCCCCCcccCCCeEEEECc-CC--EEEEEe-CCeEEEecCCC---CCcC-CCCccCCCCeEEEEcccCE--E
Confidence 999765422211111113468888776 33 333344 99999997532 1111 1111233457777665433 2
Q ss_pred EEEeCCCcEEEeeCCC
Q 015301 247 ISNGKDQTTKLWDIRK 262 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~ 262 (409)
+.-. ||.|..|-...
T Consensus 154 ~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 154 LAVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEEE-TTEEEEEECCT
T ss_pred EEEE-CCEEEEecCCC
Confidence 2233 79999997665
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.03 E-value=11 Score=30.83 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCCeEEE-EECC--CCCEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 40 NSRVYTS-QFSN--DGSFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~-~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...|.++ ...+ +..++++++.+|.++--.+..-... .......... .+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D-~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDND-ELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTC-CEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCC-EEEEEEEecCCCEEEEEECCCeEEEE
Confidence 3455555 3442 5789999999999998886542111 1112222322 34444444455678888889998888
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-------ee--EEcCC
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-------SL--RIPAH 183 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~--~~~~~ 183 (409)
.....+.............+.+. ....|.++...+++.+++..+..|.++.-.+..-.. +. .+..-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-----~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-----IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-----TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCC-----CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 87631211111111111111111 122477776666677889999999998887643221 11 12221
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.+..+... .+...++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3456555554 344556666777877777643
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=86.86 E-value=19 Score=34.77 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEeCCCCcEEEEe---eCCCeEEEeccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFADETGHLIFSG---SDDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~ 215 (409)
.+.+++..++..++++-+.|+++++|++.+++++.+..-. ..........|..+.++.+- ..+|..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 5677888888889999999999999999999988765211 11111222333344444332 245677777654
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.80 E-value=13 Score=30.39 Aligned_cols=154 Identities=6% Similarity=0.020 Sum_probs=86.4
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC--
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-- 172 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-- 172 (409)
|+..++++.+.+|.|+--.+..-+..... ...+ .....+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-------~~~l-----ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~el 70 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-------DFAM-----KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHEL 70 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-------CCCC-----CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-------cccc-----CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHC
Confidence 56778889999999987765422111000 0000 011134444455556677777888887666542
Q ss_pred -------CCeeeeE---EcCCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccC----CceeeeeeccccceeE
Q 015301 173 -------ANKCSLR---IPAHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISK----GRANGVLMGHLEGITF 236 (409)
Q Consensus 173 -------~~~~~~~---~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~v~~ 236 (409)
.|.++.. +. ....|..+...+. ++.+++..+.+|.++-..+..+... +.....+... +.+..
T Consensus 71 p~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~ 148 (323)
T 1wp5_A 71 PDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVD 148 (323)
T ss_dssp CBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEE
T ss_pred cCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEE
Confidence 2232211 22 2345666544322 2567888899999999887543321 2222223322 45555
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+........++..+.+|.+..++...
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 54444556678888899888887765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=83.53 E-value=22 Score=30.96 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=54.0
Q ss_pred cceeeEEecCce--eEeeccceEEEEeeecCCC--ce-------e-ec----CCCCeEEEEECCC----CCEEEEEeC--
Q 015301 3 VGREVNYSGRGR--FSAADSCHVLSRYLPVNGP--WK-------V-DG----MNSRVYTSQFSND----GSFFVAASQ-- 60 (409)
Q Consensus 3 ~~~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~--~~-------l-~~----h~~~v~~~~~s~~----~~~l~t~~~-- 60 (409)
.++.++|.|||. ++++.....+..+.+.... .. + .+ ..+....|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999984 6555444444443322110 01 1 11 2456889999996 444444332
Q ss_pred C----------CcEEEEEcCCC----------eeeeeee-ecccccceEEEEEeCCCCcEEEEEec
Q 015301 61 E----------SNIKVYNVDKN----------WKIQKDI-ETKALRWTITDTSLSPDQRFLVYASI 105 (409)
Q Consensus 61 d----------~~i~vw~~~~~----------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 105 (409)
+ ..|.-|.+..+ +.+.... ....| ....|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 13444665421 1222211 12234 4678999999987776654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=82.73 E-value=21 Score=30.14 Aligned_cols=105 Identities=6% Similarity=-0.046 Sum_probs=53.9
Q ss_pred eeEEEEEcC-C-CCeEEEEEecCeEEEEECCCCe--eeeEEc----------------CCCCCeEEEEEeCCCCcEEEEe
Q 015301 144 GIFSVKFST-D-GQELVAAGSDNFIYVYDLQANK--CSLRIP----------------AHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 144 ~v~~~~~~~-~-~~~l~~~~~d~~i~v~d~~~~~--~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
.|.++++.| + ...+.+++..+.|...+-.... .+.... .....+.+|.+.|.+.+.|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 588899987 2 4567777666766655432211 111110 0123578899985455555555
Q ss_pred eCCCeEEEecccccccCCceeeeeec-----c--------ccceeEEEEcCC-CCeEEEEeCCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMG-----H--------LEGITFIDSRRD-GRYFISNGKDQ 253 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----~--------~~~v~~~~~~~~-~~~l~~~~~dg 253 (409)
..++.|...+- .+..-..+.. + ...+..+.+.|+ ...|+.+...+
T Consensus 196 ~~~ggl~~s~D-----gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 196 MSSGGVFESTD-----AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EETBEEEEESS-----TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ECCCCEEEECC-----CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 54454444331 1111111110 0 124788888885 35666665544
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=80.33 E-value=7.1 Score=35.10 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=40.8
Q ss_pred EeeeecCCCCEEEEEeCC------------CeEEEEEccCCceEEEeccC-CcceeeeEEecCcCeEEee
Q 015301 317 FSPEYSTAQKYIYTGSSD------------NSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~d------------g~v~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~ 373 (409)
-.++|+|.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 355789999876664432 34666777778776666655 4589999999999977665
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=80.15 E-value=39 Score=31.61 Aligned_cols=282 Identities=11% Similarity=0.041 Sum_probs=144.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
..|.++....+|.+.+ |+.+| +..++..++.......... .....|.++...+++..|-+|+. +-+..++..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 5688998888887655 44444 7788877653221111110 01224888888777765555654 457788877654
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc-------CCCCCeEEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVC 191 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~ 191 (409)
....... . ...|.++....+|.+ ..|+. +-+.+++..+++...... .....|.++.
T Consensus 223 ~~~~~~l---~------------~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 223 IKQTEAF---H------------NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp EEEEEEE---E------------EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred EEeccCC---C------------CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence 3221110 0 124888888877764 44554 458889887665432111 1234588887
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeee----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.. .++++ -.|+..| +.++... ......... ......|.++.-..+|.+.+ |+.+| +..++..+.....
T Consensus 286 ~D-~~g~l-WiGT~~G-l~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 286 AD-QEHNI-WLGTDYG-ISLSRYN---SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHD 357 (758)
T ss_dssp EC-TTCCE-EEEESSS-EEEECCC---C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCC
T ss_pred Ec-CCCCE-EEEeCCc-ccccccC---CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccce
Confidence 76 55554 4455556 5444321 011110000 01124578888777777544 45555 6666654311100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
...+.... ........+.++..+.+|++- .|+ ++-+..||..+++
T Consensus 358 --------------------------------~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 358 --------------------------------AIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQ 403 (758)
T ss_dssp --------------------------------CEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTE
T ss_pred --------------------------------eEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCc
Confidence 00000000 000000112333344556544 455 4568999987765
Q ss_pred eEEEe--cc----CCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 347 QVAKL--DF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~--~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..... .. ....|.++.-.+++.+.+ |+..+-|.+++..
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 43221 11 123577887777776444 4445557777743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 409 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.3 bits (217), Expect = 4e-20
Identities = 62/346 (17%), Positives = 114/346 (32%), Gaps = 43/346 (12%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G S V F S V+AS+++ IKV++ + + K ++ D S
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSG 71
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
+ L S + + +G + + + SV +G +
Sbjct: 72 KLLASCSADMTIKL---------------WDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
V+A D I ++++Q C H+ V V ++ G LI S S+D +VW
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP-NQDGTLIASCSNDQTVRVWVVATK 175
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277
K L H + I + Y + + + + +
Sbjct: 176 ECKA----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV 337
WD L T GH + F K+I + + D ++
Sbjct: 232 WDVS--------------TGMCLMTLVGHD--NWVRGVLFHSG----GKFILSCADDKTL 271
Query: 338 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
++D + + L+ H V +H P +++ S D + WE
Sbjct: 272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.8 bits (208), Expect = 5e-19
Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 29/265 (10%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
+ V F +V+A D I V+D + + H V + F L
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
+D ++ + + GH ++ + +G + +S +D+T K+W+++
Sbjct: 79 ADMTIKLWDFQGFEC-----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 264 SSNTTDNSRLRDYDWDYRWMEYPSY---------ARRLKHPHDQSLATYKGHSVLRTLIR 314
T R++ R + + R + A + H + I
Sbjct: 134 YCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 315 CYFSPEYSTA--------------QKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
YS+ ++ +GS D ++ ++D+ +G + L H+ VR
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 361 CCWHPIYPMLISSSWDCNIVRWEIP 385
+H ++S + D + W+
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 5e-14
Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 7/199 (3%)
Query: 19 DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78
D + G V + + DG+ + S + ++V+ V +
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Query: 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVD---VGSSARESLANVTEIHKG-LDF 134
E + + I+ S + + S +R+ + ++ G
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 135 SADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
+ G ++ + V F + G+ +++ D + V+D + +C + AH+ V ++ F
Sbjct: 242 TLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-H 298
Query: 195 ETGHLIFSGSDDSLCKVWD 213
+T + +GS D KVW+
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 2/161 (1%)
Query: 226 VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT--DNSRLRDYDWDYRWM 283
L GH +T + +S +D T K+WD T ++
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343
+ + ++ + S +I + S D ++ ++++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 344 SGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+G V H VR + ++ S S D + W +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 6e-06
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353
P GH + R F P + + S D ++ ++D +G L
Sbjct: 4 IPRPPEKYALSGHR--SPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFERTLKG 57
Query: 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
H V+D + +L S S D I W
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLW 86
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.8 bits (213), Expect = 3e-19
Identities = 66/354 (18%), Positives = 116/354 (32%), Gaps = 39/354 (11%)
Query: 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRF 99
S V +FSNDG + ++ +VY V + + + A + + S
Sbjct: 62 TSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159
+Y ++ E + E I+S+ + G +LV+
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR---C 216
D + ++DL+ + + V TV + G I +GS D +VWD
Sbjct: 181 GSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276
N GH + + + RDG+ +S D++ KLW+ L++
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN-------------LQNA 286
Query: 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336
+ S + + + S + +YI +GS D
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKD---------------FVLSVATTQNDEYILSGSKDRG 331
Query: 337 VYIYDLVSGAQVAKLDFHNAPVRDCC------WHPIYPMLISSSWDCNIVRWEI 384
V +D SG + L H V P Y + + S DC W+
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 1e-12
Identities = 47/277 (16%), Positives = 89/277 (32%), Gaps = 31/277 (11%)
Query: 5 REVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNI 64
R V +S G+F A + L R + V + + S
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184
Query: 65 KVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124
+ + Q + T D +++ S+ V + D +
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG------- 237
Query: 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK--------- 175
+ + + G + ++SV F+ DGQ +V+ D + +++LQ
Sbjct: 238 -FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 176 ---CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232
C + HK V +V + I SGS D WD++ G +L GH
Sbjct: 297 SGTCEVTYIGHKDFVLSVAT-TQNDEYILSGSKDRGVLFWDKK----SGNPLLMLQGHRN 351
Query: 233 GITFIDSRR------DGRYFISNGKDQTTKLWDIRKM 263
+ + + F + D ++W +K+
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 7e-11
Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 25/227 (11%)
Query: 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--------------VLM 228
H S V V F G + +G + + +V+ R +
Sbjct: 61 HTSVVCCVKF-SNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288
I + DG++ + +D+ ++WDI +D +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 289 --ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346
+ L T + L KYI GS D +V ++D +G
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 347 QVAKLDF-------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386
V +LD H V + ++S S D ++ W +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (129), Expect = 8e-09
Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 49/282 (17%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI------------------PAHKSD 186
+ VKFS DG+ +A G + VY + R+ P+
Sbjct: 65 VCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR------ 240
+ +VCF G + +G++D L ++WD G F
Sbjct: 124 IRSVCF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 241 -----RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295
R + + ++ + D + D + S L
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA------ 349
D + GH ++ F+ + + + +GS D SV +++L + +
Sbjct: 243 LDSENESGTGHK--DSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 350 ------KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
H V ++S S D ++ W+
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 5e-17
Identities = 48/345 (13%), Positives = 93/345 (26%), Gaps = 58/345 (16%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G +++Y + D V+ASQ+ + +++ K+ + + +P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSG 109
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157
++ + I +I ++ + V+ G V S D
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNV--RVSRELAGHTGYLSCCRFLDDNQIVTSSGD---- 163
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217
+ L SG+ D+ K+WD
Sbjct: 164 -------TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---- 212
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277
+ +G GH I I +G F + D T +L+D+R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-----------QEL 261
Query: 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSV 337
Y + FS + + G D +
Sbjct: 262 MTYSHDNIIC-----------------------GITSVSFSKS----GRLLLAGYDDFNC 294
Query: 338 YIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
++D + + L H+ V + + SWD + W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.9 bits (172), Expect = 3e-14
Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 17/195 (8%)
Query: 19 DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78
D+ L G V + + D FV+ + +++ K+++V + Q
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221
Query: 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138
I P+ S A + D +
Sbjct: 222 --FTGHESDINAICFFPNGNAFATGSDDATCRLFD-------------LRADQELMTYSH 266
Query: 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198
D GI SV FS G+ L+A D V+D + + H + V+ + D+ G
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GM 325
Query: 199 LIFSGSDDSLCKVWD 213
+ +GS DS K+W+
Sbjct: 326 AVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 5e-14
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 142 EFGIFSVKFSTDGQELVAAGSDNFIYV--YDLQANKCSLRIPAHKSDVNTVCFADETGHL 199
E I ++ F +G D + + + +V F ++G L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRL 284
Query: 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
+ +G DD C VWD K GVL GH ++ + DG + D K+W+
Sbjct: 285 LLAGYDDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 2e-12
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 10/213 (4%)
Query: 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234
+ + H + + + + L+ S S D +W + +
Sbjct: 46 RTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIW----DSYTTNKVHAIPLRSSWV 100
Query: 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294
G Y G D +++++ N + L + + + +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPE-----YSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349
D + A + + +T + + + + +G+ D S ++D+ G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 350 KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
H + + C+ P + S D +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 41/252 (16%), Positives = 73/252 (28%), Gaps = 18/252 (7%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
I+++ + TD + LV+A D + ++D IP S V T +A ++ G
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
D+ + + + + G D +++ D T LWDI
Sbjct: 117 LDNICSIYNLKTREGNVRVSRE--LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH--------DQSLATYKGHSVLRTLIRC 315
TT D + + T+ GH +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAI 232
Query: 316 YFSPEYSTAQKYIYTGSSDNSVYI--YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISS 373
F P TGS D + + D + + +L++
Sbjct: 233 CFFPN----GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 374 SWDCNIVRWEIP 385
D N W+
Sbjct: 289 YDDFNCNVWDAL 300
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 2e-13
Identities = 50/342 (14%), Positives = 103/342 (30%), Gaps = 18/342 (5%)
Query: 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102
Y+ + DG + + ++ + I T + ++S R +
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTRHVYT 68
Query: 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162
V + D+ +S + + ++ I S K DG L+ G
Sbjct: 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY----------IRSCKLLPDGCTLIVGGE 117
Query: 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222
+ + ++DL A ++ S A + + R
Sbjct: 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177
Query: 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282
GH +G + ID DG + G D T + WD+R+ + + + Y
Sbjct: 178 QF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
+ L C S +++ K+ + DN + +
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 343 VSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
GA + + ++ V C +++ S D +E+
Sbjct: 295 PYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 8e-08
Identities = 35/286 (12%), Positives = 67/286 (23%), Gaps = 47/286 (16%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204
+S + DGQ + + + + + H V V ++ +++G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP-TRHVYTGG 70
Query: 205 DDSLCKVWD-RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
+ KVWD + + I DG I G+ T +WD+
Sbjct: 71 KGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Query: 264 SSNTTDNSRLRDYDWDYR----WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319
+ + + L +
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
Query: 320 EYSTAQKYIYTGSSDN----------------------------------------SVYI 339
+ S ++TG DN S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 340 YDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
V+ +L H + V + +S+ D + W P
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 41/330 (12%), Positives = 80/330 (24%), Gaps = 66/330 (20%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK--DIETKALRWTITDTSLSP 95
V SN + +KV+++ ++ I L P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ 155
D L+ + ++I D+ + A +T A + +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 156 ELVAAGSDNFIYVYDLQANKCSLR-------------------IPAHKSDVNTVCFADET 196
+ + + C + F +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 197 GHLIFSGSDDSLCKVWDRRCFISKG---RANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253
L + + + L + L H + + G++F+S GKD
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287
Query: 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313
W S+ K S +++
Sbjct: 288 LLNAWRTPYG----------------------------------ASIFQSKESS---SVL 310
Query: 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343
C S + KYI TGS D +Y+++
Sbjct: 311 SCDISVD----DKYIVTGSGDKKATVYEVI 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 1e-12
Identities = 29/268 (10%), Positives = 61/268 (22%), Gaps = 27/268 (10%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA---HKSDVNTVCFADETGHLI 200
I +K L+ D + VY ++ + +K + F D T I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ G+ D S +G + +
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320
+ + + + + +R + ++ + ++ S
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 321 Y---------STAQKYIYTGSSDNSVYIYDLVSGAQV---------------AKLDFHNA 356
Q+ S D V + K
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 357 PVRDCCWHPIYPMLISSSWDCNIVRWEI 384
PV + P + L ++ D I W +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNL 280
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 33/342 (9%), Positives = 81/342 (23%), Gaps = 34/342 (9%)
Query: 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102
+ + S + S + ++ VY D K +++ + + + + +Y
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162
+ + A D+ I +
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222
D I V +L +N N + D + G ++S + +
Sbjct: 134 DGVIAVKNLNSNNT--------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282
+ ++ + + D + +
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS------------- 232
Query: 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
++R + S E+S K++YT SD + ++L
Sbjct: 233 ------SKRFAFRCHRLNLKDTNL------AYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
Query: 343 VSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+ ++ N +L ++ D
Sbjct: 281 QTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 3/185 (1%)
Query: 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWT-IT 89
+ + + S + S ++ + + IE L++
Sbjct: 139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198
Query: 90 DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149
L +Q +SI V + + ++ + + + + S++
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
FS + L AGSD I ++LQ K ++ A ++ + V A L + SDD+
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIACSDNILCLATSDDTF- 316
Query: 210 KVWDR 214
K
Sbjct: 317 KTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 18/218 (8%), Positives = 44/218 (20%), Gaps = 22/218 (10%)
Query: 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL---MGHLEGITFID 238
A K ++ + + L+ S D V+ N L + + + +
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYK----FDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 239 -SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297
D+ S + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 298 QSLATYKGHSVLRTLIR---------CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348
+ + + ++ T + G +++ V + L
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 349 AKLDFHNAPVRDCCWHPIYP----MLISSSWDCNIVRW 382
+ + P SS D +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.2 bits (154), Expect = 5e-12
Identities = 36/321 (11%), Positives = 81/321 (25%), Gaps = 33/321 (10%)
Query: 85 RWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143
R T S P + Y A V +D G S + T
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS------------ 64
Query: 144 GIFSVKFS--TDGQELVAAGSDNFIYVYDLQANKCSLRI--------PAHKSDVNTVCFA 193
+ +VKFS Q L + + V+ +K S + ++ + +
Sbjct: 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Query: 194 -DETGHLIFSGSDDSLCKVWDR------RCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246
+ + D+ + + D
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306
+ R + + ++ R++ +S K
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 307 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366
+ ++ + T +D ++ ++D+ + V K + + +
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 367 YP---MLISSSWDCNIVRWEI 384
+IS S D + +E+
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 63.3 bits (152), Expect = 1e-11
Identities = 35/335 (10%), Positives = 89/335 (26%), Gaps = 25/335 (7%)
Query: 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIV 112
+ +A ++ + V + +K + K I T ++P R + + +
Sbjct: 3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 113 DV--GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD 170
D+ G + + E F A D + + + + +YD
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 171 LQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF------------- 217
+ + + + +A + L G D +
Sbjct: 122 AETLSR-RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 218 ---ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274
N + F +R+D D+ +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-- 238
Query: 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI--RCYFSPEYSTAQKYIYTGS 332
+ + P+ R + + ++ ++ + Y+S ST ++ G
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG 298
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY 367
+ + YD + + ++D ++
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLF 333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.0 bits (151), Expect = 2e-11
Identities = 33/262 (12%), Positives = 68/262 (25%), Gaps = 26/262 (9%)
Query: 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFS 202
I ++ D ++ +++ +++Y+ NK + H V V + + I +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVT 68
Query: 203 GSDDSLCKVWDRRCFISK--------GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254
D VW + K RA + F I + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY--------------ARRLKHPHDQSL 300
+ L + R P +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
+ + +S + S D++V + D VA L P+
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 361 CCWHPIYPMLISSSWDCNIVRW 382
+ L+++ DC V +
Sbjct: 249 VTFIT-ESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 9e-08
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 306 HSVLRTLIRCY-FSPEYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNAPVRDCC 362
HS L I C+ ++ + + I +++ V+IY+ QV +L HN V
Sbjct: 3 HSFLVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD 58
Query: 363 WHPIYPMLISSSWDCNIVRWE 383
W P +++ D N W
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 7e-06
Identities = 33/354 (9%), Positives = 83/354 (23%), Gaps = 17/354 (4%)
Query: 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY 102
+ ++ D + + +Y N K + E K +T +PD +V
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162
+ + + + I++ ++ +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL----IFSGSDDSLCKVWDRRCFI 218
D ++ + + + ++ + + + + +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278
G + + +G D T L D K + T
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA----SETL 244
Query: 279 DYRWMEYPSYARRLKHPHDQS--LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336
+ + + + + HD L TY + + P+ S+ + N
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304
Query: 337 VYIYDLVSGAQVAK--LDFHNAPVRDCCWHP----IYPMLISSSWDCNIVRWEI 384
A H V ++ D + W++
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 31/255 (12%), Positives = 65/255 (25%), Gaps = 15/255 (5%)
Query: 21 CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80
C+ + S V + + + A S + ++++ ++
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140
T + + + A
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200
+ + +V F T+ LVAAG D F ++ + L
Sbjct: 242 ETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK--------QSSQ 292
Query: 201 FSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFI----DSRRDGRYFISNGKDQT 254
+ + D++ A G + H ++ I + F + G D
Sbjct: 293 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352
Query: 255 TKLWDIRKMSSNTTD 269
+WD+R + S D
Sbjct: 353 MSIWDVRSLESALKD 367
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 0.002
Identities = 30/327 (9%), Positives = 77/327 (23%), Gaps = 31/327 (9%)
Query: 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL 93
++ N +V ++ D + V + N V+ + + + R
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW- 103
Query: 94 SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153
+P+++ S +++I + + S+ + +
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQ-----------ENDWWVCKHIKKPIRSTVLSLDWHPN 152
Query: 154 GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
L A D ++ + R G +C +
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212
Query: 214 RRCFISKGRANGVLMGHLE-------------GITFIDSRRDGRYFISNGKDQTTKLWDI 260
+ V + + + + + + G D L+
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTY 271
Query: 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL----IRC- 315
+ + RL + + S + + L +L +
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331
Query: 316 YFSPEYSTAQKYIYTGSSDNSVYIYDL 342
T D + I+D+
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 12/211 (5%)
Query: 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234
K + H V T G+ I SGSDD+ KVW G+ L+GH G+
Sbjct: 7 KSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWS----AVTGKCLRTLVGHTGGV 60
Query: 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294
R + S + + + ++ +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 295 PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354
D G + + + + +G+ D V ++D + + L H
Sbjct: 121 VWDI----ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 176
Query: 355 NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
V + I+ ++S S D +I W++
Sbjct: 177 TNRVYSLQFDGIH--VVSGSLDTSIRVWDVE 205
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 3e-10
Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 15/237 (6%)
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
G +V+ DN + V+ KC + H V + D + +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 210 KV-WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTT 268
G + V HL + RD + + + + +++
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328
Y + + L T +GH+ ++
Sbjct: 143 VQ----YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--------NRVYSLQFDGIHV 190
Query: 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
+GS D S+ ++D+ +G + L H + +L+S + D + W+I
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIK 245
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 4e-10
Identities = 52/362 (14%), Positives = 98/362 (27%), Gaps = 72/362 (19%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G + V T G+ V+ S ++ +KV++ ++ + W+
Sbjct: 14 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF-------------- 143
+ + + V +H G D
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 144 ----GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199
DG+ +V+ D + V+D + C + H + V ++ F G
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIH 189
Query: 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
+ SGS D+ +VWD L GH + ++ +S D T K+WD
Sbjct: 190 VVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWD 243
Query: 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319
I+ T + ++
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNF------------------------------- 272
Query: 320 EYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-----HNAPVRDCCWHPIYPMLISSS 374
+ T S D +V ++DL +G + L V + S
Sbjct: 273 --------VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324
Query: 375 WD 376
+
Sbjct: 325 RN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 6e-06
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+S KGH + I +GS DN++ ++ V+G + L H
Sbjct: 7 KSPKVLKGHD---DHVITCLQFC----GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 358 VRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPLPKRRTVRARRFFG 405
V + S+ + E TVR
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
LV+ +D+ + ++D++ +C + + V + + + SDD
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 210 KVWDRRCF-ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT----KLWD 259
K+WD + + G + I + ++ T + D
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 3e-10
Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 23/233 (9%)
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
+ ++ D I VYD K L++ H V + +A G ++ SGS D
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV 76
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269
+VWD + G I ++ +Y ++ +D T +W + K SS D
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTV--RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPD 133
Query: 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329
+ DY + E Y + H S+ T GH +
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH------------------GNIVV 175
Query: 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+GS DN++ ++D+ + L H + + IS+S D I W
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 7e-09
Identities = 42/352 (11%), Positives = 93/352 (26%), Gaps = 18/352 (5%)
Query: 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQ 97
G + V T + ++ + + + I+VY+ + + + +
Sbjct: 10 GHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG 65
Query: 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF------GIFSVKFS 151
+ ++ + + LD + V
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 152 TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211
+ G ++ + + + + + +V G+++ SGS D+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 212 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271
WD + +L GH + I + + IS D T ++WD+ T
Sbjct: 186 WDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241
Query: 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331
++ A + I
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAITTFYVSDNILVS 299
Query: 332 SSDNSVYIYDLVSGAQV-AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
S+N IY+L SG V A + + + ++ + D
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 4e-06
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFS 202
+ ++ ++ +GS+N +Y+L++ K I + +V F +T L+ +
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAA 340
Query: 203 GSDDSLCKVWD 213
D +
Sbjct: 341 VEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360
T +GH ++I C E Y+ TG+ D + +YD ++ + +L H+ V
Sbjct: 6 TTLRGHM--TSVITC-LQFE----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 361 CCWHPIYPMLISSSWDCNIVRW 382
+ ++ S+ V
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWD 80
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 58.2 bits (139), Expect = 5e-10
Identities = 30/317 (9%), Positives = 91/317 (28%), Gaps = 33/317 (10%)
Query: 48 FSNDGSF-FVAASQESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFLVYA 103
+ D +V + +I ++D + + ++ ++SPD + + YA
Sbjct: 47 MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV-YA 105
Query: 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163
++ + D L + ++ ++ + DG +
Sbjct: 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS---LYVAG 162
Query: 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223
IY D++ K ++ +P + A + + S +
Sbjct: 163 PDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD--- 218
Query: 224 NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283
D + + D++ ++T + + L + +
Sbjct: 219 ------------------DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260
Query: 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRC--YFSPEYSTAQKYIYTGSSDNSVYIYD 341
+ + + K +++ Y+ + +Y G + N + +++
Sbjct: 261 PKDPN-QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319
Query: 342 LVSGAQVAKLDFHNAPV 358
+ +V + +
Sbjct: 320 PDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 17/278 (6%), Positives = 49/278 (17%), Gaps = 41/278 (14%)
Query: 148 VKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDD 206
+ ++ N ++V D+ ++ K T A + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 207 SLCKVWDRRC-----FISKGRANGVLMGHLEGITF---------IDSRRDGRYFISNGKD 252
D + G + + + K
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 253 QTTKLWDIRKMSSNTT-------DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305
+++ L D ++ +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 306 HSVLR-------------------TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346
+ R Y + ++ T DL +G
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 347 QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384
+ + + ++++
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 2e-09
Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 45/286 (15%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFS 202
I ++ S DG+ L +A ++ I +D+ + P H + + + + S
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 203 GSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG------------------- 243
D S L G+
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 244 ---------------------RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282
+ + + + + +
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342
+ +R++ + + +S + TGS DNSV ++++
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 343 VSGAQVAKLDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385
+ + + V W ++S+ D NI W +P
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 3e-04
Identities = 20/166 (12%), Positives = 40/166 (24%)
Query: 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280
G + V GH + IT + S DG+ S + WDI SN
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340
+ H + + + S + + + Y +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 341 DLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386
+ + + D + +++ G
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.002
Identities = 24/201 (11%), Positives = 55/201 (27%), Gaps = 6/201 (2%)
Query: 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD 242
H + + G +FS + WD IS G +N V +
Sbjct: 11 HNKAITALSS-SADGKTLFSADAEGHINSWD----ISTGISNRVFPDVHATMITGIKTTS 65
Query: 243 GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302
+ D K+ +++ + + +
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-AKLDFHNAPVRDC 361
G + S ++++ G D+ V++Y L + K H A +
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 362 CWHPIYPMLISSSWDCNIVRW 382
+ L+++ ++ +
Sbjct: 186 AFSNNGAFLVATDQSRKVIPY 206
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 2e-09
Identities = 38/252 (15%), Positives = 82/252 (32%), Gaps = 14/252 (5%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
G++ +++ D Q++V+ DN I ++D +C + H V + + + S
Sbjct: 17 GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 74
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
S + V + R + ++ KD++ +WD+
Sbjct: 75 STVRVWDVNTGEMLN---------TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS-PEYS 322
+ T + Y + +RTL
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185
Query: 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+ + +GSSDN++ ++D+ GA + C ++S ++D I W
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 383 EIPGIGEAPLPK 394
++ + P
Sbjct: 244 DLVAALDPRAPA 255
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 4e-09
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 7/206 (3%)
Query: 179 RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238
RI V I SG D+ K+WD + +L GH + +
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD----KNTLECKRILTGHTGSVLCLQ 62
Query: 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298
S+ + +M + + + M R D
Sbjct: 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122
Query: 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV 358
+ T + R + KYI + S D ++ +++ + V L+ H +
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 359 RDCCWHPIYPMLISSSWDCNIVRWEI 384
+ +++S S D I W+I
Sbjct: 182 ACLQYRD--RLVVSGSSDNTIRLWDI 205
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 8e-07
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
+ +V+ SDN I ++D++ C + + V I SG+ D
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 210 KVWDRRCFISKGRANG-----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259
KVWD + G L+ H + + D +S+ D T +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 54/345 (15%), Positives = 90/345 (26%), Gaps = 81/345 (23%)
Query: 48 FSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107
D V+ +++ IK++ D T + +T + S
Sbjct: 21 LQYDDQKIVSGLRDNTIKIW----------DKNTLECKRILTGHTGS------------V 58
Query: 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIY 167
+ D S + + + + +V D I
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 168 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 227
V+D+ + V D I S S D KVW+ S L
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN----TSTCEFVRTL 174
Query: 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287
GH GI + R +S D T +LWDI +
Sbjct: 175 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---- 228
Query: 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347
K I +G+ D + ++DLV+
Sbjct: 229 --------------------------------------KRIVSGAYDGKIKVWDLVAALD 250
Query: 348 ---------VAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
+ L H+ V + ++SSS D I+ W+
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357
SL S + C + + I +G DN++ I+D + L H
Sbjct: 3 HSLQRIHCRSETSKGVYC-LQYD----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57
Query: 358 VRDCCWHPIYPMLISSSWDCNIVRW 382
V + + SS +
Sbjct: 58 VLCLQYDERVIITGSSDSTVRVWDV 82
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 6e-09
Identities = 33/361 (9%), Positives = 75/361 (20%), Gaps = 41/361 (11%)
Query: 43 VYTSQFS-NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV 101
+ FS DG S+ + +V + ++ I D +
Sbjct: 5 KFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAF 58
Query: 102 YAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159
+ I D + E + +G + T
Sbjct: 59 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL---- 114
Query: 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219
+ ++ + + + + + H G V+D
Sbjct: 115 ---ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171
Query: 220 KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR----- 274
D + D ++ + S+
Sbjct: 172 FAA-----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 275 -----------DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323
+ + P + Y+ L + I Y P +
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286
Query: 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383
Y + YD+ + K+ + D ++ D I +
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
Query: 384 I 384
+
Sbjct: 343 L 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.6 bits (124), Expect = 4e-08
Identities = 35/326 (10%), Positives = 68/326 (20%), Gaps = 17/326 (5%)
Query: 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL 100
R+ + D + D + E + +
Sbjct: 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV 102
Query: 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160
+ ++ G + I D + F
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMIT-------DFTISDNSRFIAYGFPLKHGETDG 155
Query: 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR---CF 217
I+VYD++ K + D AD ++ S SL DR
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFS 213
Query: 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS---SNTTDNSRLR 274
V+ + D ++ + L
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273
Query: 275 DYDWDYRWMEY-PSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGS 332
Y + A P L Y + + + S +K +
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 333 SDNSVYIYDLVSGAQVAKLDFHNAPV 358
D +Y + L ++ P+
Sbjct: 334 DDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.3 bits (87), Expect = 0.001
Identities = 18/171 (10%), Positives = 46/171 (26%), Gaps = 23/171 (13%)
Query: 10 SGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNV 69
S R + D + + V+ P+ + + ++ A + N
Sbjct: 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256
Query: 70 DKNW----KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125
+ I ++ + + A ++ DV + + N
Sbjct: 257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN- 315
Query: 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176
+ ++ S D + ++ D IY + L+ +
Sbjct: 316 ------------------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 1e-08
Identities = 32/303 (10%), Positives = 70/303 (23%), Gaps = 26/303 (8%)
Query: 92 SLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151
+P + Y + ++ V VGS + + H K S
Sbjct: 24 GNTPAGDKIQYCNGTSVY-TVPVGS---LTDTEIYTEHSH------------QTTVAKTS 67
Query: 152 TDGQELVAAGSDNFI--YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLC 209
G + + + + IP V + + E+ + G
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127
Query: 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269
+ + + F SR S+ K S +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187
Query: 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-------LRTLIRCYFSPEYS 322
+++ + + V F +S
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247
Query: 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDCCWHPIYPMLISSSWDCNIVR 381
I + S+D ++ I+++ + + + L+S S + I
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 382 WEI 384
Sbjct: 308 VNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 1e-07
Identities = 25/248 (10%), Positives = 58/248 (23%), Gaps = 12/248 (4%)
Query: 147 SVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD 206
+ + G ++ + +Y + + + H +G+ SG
Sbjct: 22 VLGNTPAGDKI-QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVH 79
Query: 207 -SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265
++ + V G ++ I++ + + S+
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139
Query: 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-- 323
D++ F
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199
Query: 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK-------LDFHNAPVRDCCWHPIYPMLISSSWD 376
+ D ++ +Y+ V G + H+ V W P + S+S D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259
Query: 377 CNIVRWEI 384
I W +
Sbjct: 260 KTIKIWNV 267
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 37/395 (9%), Positives = 98/395 (24%), Gaps = 40/395 (10%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNV---DKNWKIQKDIETKALRWTITDTSL 93
++ +++ N F V+ S + +KV++ D K + + +
Sbjct: 11 KAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 94 -------SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146
+ + + S + + ++ D D + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-----LLDSDMKKHSFW 123
Query: 147 SVKFSTDG-----QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF 201
++K+ LVA Y++ +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183
Query: 202 SGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ---TTKLW 258
S S+ R I+ G NG + + ++ + N +
Sbjct: 184 SQFATSVD--ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318
++ NS ++ + E + + S
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGER-------IGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC----CWHPIYPMLISSS 374
++ + + + + D + +D+ + ++ L+ H + L
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 375 WDCNIVRWEIPGIGEAPLPKRRTVRARRFFGRALR 409
V++ G R++R
Sbjct: 355 VFD--VKFLKKGWRSGMGADLNESLCCVCLDRSIR 387
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 6e-07
Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 4/242 (1%)
Query: 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG 203
I S+ S + + D + S A ++ L+
Sbjct: 48 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107
Query: 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263
S R + + + K K
Sbjct: 108 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV--FKLSDLEVSFDLKTPLRAKP 165
Query: 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323
S + S D + + + + + + E
Sbjct: 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 225
Query: 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 382
+ + TGS D +++IY + ++ K L+ H V + W L+SS D I RW
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRW 284
Query: 383 EI 384
+
Sbjct: 285 NV 286
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 6e-06
Identities = 38/324 (11%), Positives = 83/324 (25%), Gaps = 50/324 (15%)
Query: 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTS-------------- 92
++DGSF AS + ++ D T I
Sbjct: 53 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152
L+PD + L++ + V + + F D
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT------FFMHCR 166
Query: 153 DGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKV 211
DG VA G++ + + +N ++ + G L++ +
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPEDEFL-----INHPAYSQKAGRLVWP-TYTGKIHQ 220
Query: 212 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271
D + + E R G ++ + + + +
Sbjct: 221 IDLSS--GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 272 RLRDYDWDYRWMEYPSYARRLKHPHD-QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330
D + + + H+ S+ S +
Sbjct: 279 SRFVVVLD---AKTGERLAKFEMGHEIDSIN---------------VSQDEKP--LLYAL 318
Query: 331 GSSDNSVYIYDLVSGAQVAKLDFH 354
+ D ++YI+D SG ++ ++
Sbjct: 319 STGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.8 bits (86), Expect = 0.002
Identities = 19/164 (11%), Positives = 38/164 (23%), Gaps = 7/164 (4%)
Query: 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD 96
+ +S V + I ++ P
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER-ADGWRPG 249
Query: 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF----GIFSVKFST 152
V + V + LD +F I S+ S
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ 309
Query: 153 DGQEL--VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194
D + L + D +Y++D ++ + + + AD
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.3 bits (98), Expect = 7e-05
Identities = 32/327 (9%), Positives = 72/327 (22%), Gaps = 54/327 (16%)
Query: 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTS-------------- 92
+ GS F AS ++ D T I
Sbjct: 71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130
Query: 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152
L++ + + S S +T+ S
Sbjct: 131 NCASSACLLFFLFGS--SAAAGLSVPGASDDQLTKSASCFHIHPGAAAT-----HYLGSC 183
Query: 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212
+ + + A A + G L+++ + L
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQ----CTGAQNCSSQAAQA-NYPGMLVWAVASSILQGDI 238
Query: 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272
+ G+ G + R G ++ K+ + + S + +
Sbjct: 239 PAA----GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294
Query: 273 LRDYDWDYRWMEYPSYARRLKHPHD-QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-T 330
+ + + + HD ++ + + Y
Sbjct: 295 -NTSSVTASVGQT---SGPISNGHDSDAII---------------AAQD---GASDNYAN 332
Query: 331 GSSDNSVYIYDLVSGAQVAKLDFHNAP 357
+ + IYD S + ++ P
Sbjct: 333 SAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 13/160 (8%)
Query: 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS--LRIPA---HKSDVNTVCFADETG 197
+ + + S G+ L G D + + DL + + I +S + E
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 198 HLIFSGSDDSLCKVWDRR----CFISKGRANGVL---MGHLEGITFIDSRRDGRYFISNG 250
+ I + D I R + I + FI N
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 251 KD-QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289
K+ L D +++ T + D Y
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (86), Expect = 0.002
Identities = 24/236 (10%), Positives = 51/236 (21%), Gaps = 33/236 (13%)
Query: 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216
V I + D + + + V+ +G +F D + D
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRL-SASGRYLFVIGRDGKVNMIDLWM 92
Query: 217 FISKGRAN-GVLMGHLEGITFIDSRRDGRY-FISNGKDQTTKLWDIRKMSSNTTDNSRLR 274
A + T + +Y + D + ++R
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152
Query: 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334
YD E A S ++I
Sbjct: 153 TYDEQEYHPEPRVAA-------------------------ILASHY---RPEFIVNVKET 184
Query: 335 NSVYIYDLVSGAQVAKLDFHNAPV-RDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389
+ + D + + D + I+++ N + G+
Sbjct: 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213
+A + I V D+ +NK + IP S+ + + + + + + + D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIID 60
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.64 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.5 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.43 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.4 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.39 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.38 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.34 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.28 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.28 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.27 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.16 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.06 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.92 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.91 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.8 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.72 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.6 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.21 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.17 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.08 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.03 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.91 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.89 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.87 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.86 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.81 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.72 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.7 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.29 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.23 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.69 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.51 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.48 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.38 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.19 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.15 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.75 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.7 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.05 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 90.96 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 90.71 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.67 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.98 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.17 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 85.68 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 85.52 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-48 Score=327.47 Aligned_cols=285 Identities=16% Similarity=0.240 Sum_probs=242.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+|...|+|++|+|+|++||+|+ ||.|+|||+.++... ........|...|.+++|+|++++|++++.||.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 7999999999999999999997 789999999865332 2333455778899999999999999999999999999987
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
.......... ..|...+..++|+|++.++++++.++.|.+|++.+++.......|...|.+++|+ +
T Consensus 128 ~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s-~ 193 (337)
T d1gxra_ 128 APTPRIKAEL-------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-N 193 (337)
T ss_dssp CC--EEEEEE-------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-T
T ss_pred cccccccccc-------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 6543222211 1234469999999999999999999999999999999999999999999999999 8
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
++..+++++.|+.+++||++ .++.+..+ .|...|.+++|+|++++|++++.|+.+++||++...
T Consensus 194 ~~~~~~~~~~d~~v~i~d~~----~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----------- 257 (337)
T d1gxra_ 194 DGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------- 257 (337)
T ss_dssp TSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----------
T ss_pred cccccccccccccccccccc----cceeeccc-ccccceEEEEEcccccccceeccccccccccccccc-----------
Confidence 89999999999999999975 55555444 578899999999999999999999999999998732
Q ss_pred cccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 276 YDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
......|. ..+.+++|+|++++|++++.||.|++||+.+++.+..+. |.
T Consensus 258 ------------------------~~~~~~~~------~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~ 306 (337)
T d1gxra_ 258 ------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES 306 (337)
T ss_dssp ------------------------EEEECCCS------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred ------------------------cccccccc------cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CC
Confidence 12223333 234566899999999999999999999999999988876 78
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..|++++|+|++++|++++.||.|++||+
T Consensus 307 ~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 89999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-47 Score=318.57 Aligned_cols=289 Identities=22% Similarity=0.329 Sum_probs=254.9
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
....|.||.++|++++|+|++++||||+.||+|+|||+++++.+.. ...|...|.+++|+|++.+++++..++.+.+
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKL 85 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCcEEEEeeeccccccccccccccccc
Confidence 3458999999999999999999999999999999999998865544 3457779999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|+....+..... ..|...+.++.|+|+++.+++++.|+.+++||+++++.+..+..|...+.+++
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (317)
T d1vyhc1 86 WDFQGFECIRTM---------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150 (317)
T ss_dssp EETTSSCEEECC---------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred cccccccccccc---------------ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence 998776543222 13445689999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC--------------------CeEEEEeC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG--------------------RYFISNGK 251 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~ 251 (409)
|+ +++++|++++.|+.|++|+++ .......+..|...+.++.++|++ ..+++++.
T Consensus 151 ~~-~~~~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (317)
T d1vyhc1 151 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225 (317)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred cc-cCCCEEEEEeCCCeEEEEeec----cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence 99 899999999999999999965 677778888899999999988753 46889999
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
|+.|++||+++ +..+..+.+|.. .+.+++++|++++|++|
T Consensus 226 d~~i~~~~~~~----------------------------------~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~ 265 (317)
T d1vyhc1 226 DKTIKMWDVST----------------------------------GMCLMTLVGHDN------WVRGVLFHSGGKFILSC 265 (317)
T ss_dssp TSEEEEEETTT----------------------------------TEEEEEEECCSS------CEEEEEECSSSSCEEEE
T ss_pred CCEEEEEECCC----------------------------------CcEEEEEeCCCC------CEEEEEECCCCCEEEEE
Confidence 99999999987 455666666653 34566789999999999
Q ss_pred eCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 332 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+.||.|++||+.+++++.++.+|.++|++++|+|++++|++|+.||+|++||
T Consensus 266 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-46 Score=322.12 Aligned_cols=300 Identities=25% Similarity=0.431 Sum_probs=236.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee---------------ecccccceEEEEEeCCCCcEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI---------------ETKALRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~---------------~~~~~~~~v~~~~~s~~~~~l~ 101 (409)
.+|++.|+|++|+|||++||+|+ |++|+|||+.++..+.... ....|...|++++|+|++++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 37999999999999999999987 8899999998876554332 1234566799999999999999
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
+|+.||.|++||...++..... .+|...|.++++++++..+++++.++.+++||..+........
T Consensus 138 s~~~dg~v~i~~~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 202 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVMIL---------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202 (388)
T ss_dssp EEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eccccccccccccccccccccc---------------ccccccccccccccccccccccccceeeeeeeccccccccccc
Confidence 9999999999999877543221 2355579999999999999999999999999999988777666
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-------eeccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-------LMGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
.+ ....++.+.++++++|++++.||.|++||.+ .+..... ..+|...|.+++|+|++++|++++.||.
T Consensus 203 ~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~ 277 (388)
T d1erja_ 203 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277 (388)
T ss_dssp CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cc-cccccccccCCCCCeEEEEcCCCeEEEeecc----cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 44 5566777777899999999999999999975 3333322 3468889999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+++.......... ...........|. ..+.+++|+|++++|++|+.|
T Consensus 278 i~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 278 VKLWNLQNANNKSDSKTP----------------------NSGTCEVTYIGHK------DFVLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCS------SCEEEEEECGGGCEEEEEETT
T ss_pred EEEEeccCCccccccccc----------------------cccceeeeccccc------ceEEEEEECCCCCEEEEEeCC
Confidence 999999874432211100 0011222333333 234567899999999999999
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeE------EecCcCeEEeecCCCeEEEEecC
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCC------WHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
|.|++||+.+++++.++++|.+.|++++ |+|++++|+||+.||+|++|+++
T Consensus 330 g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999886 46789999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-45 Score=305.28 Aligned_cols=293 Identities=14% Similarity=0.120 Sum_probs=235.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
.+.+.+.+++++|+|+.||.++ ++.|.+|++++...... ..+|...|++++|+|++++||+|+.||.|++||+.+.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~---~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEE---EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence 3456677899999999999886 56799999988744443 3457779999999999999999999999999999887
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
........ ..|..+|.+++|+|++++|++++. +..+++|++++++....+.+|...|.+++|+ |
T Consensus 91 ~~~~~~~~-------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~-~ 156 (311)
T d1nr0a1 91 THILKTTI-------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK-P 156 (311)
T ss_dssp TCCEEEEE-------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC-S
T ss_pred cccccccc-------------ccccCcccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 64322221 134557999999999999999886 4569999999999999999999999999999 5
Q ss_pred CCc-EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 196 TGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 196 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
+++ .|++|+.||.|++||++ ..........|..+|.++.|+|+++++++++.|+.+++||+++.........
T Consensus 157 ~~~~~l~sgs~d~~i~i~d~~----~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~--- 229 (311)
T d1nr0a1 157 SRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED--- 229 (311)
T ss_dssp SSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC---
T ss_pred cceeeeccccccccccccccc----ccccccccccccccccccccCccccccccccccccccccccccccccccccc---
Confidence 555 68899999999999975 6778888889999999999999999999999999999999987433221110
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 354 (409)
......+|. ..+.+++|+|++++|++|+.||.|+|||+++++++.++..|
T Consensus 230 ------------------------~~~~~~~h~------~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~ 279 (311)
T d1nr0a1 230 ------------------------DSLKNVAHS------GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279 (311)
T ss_dssp ------------------------TTSSSCSSS------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ------------------------ccccccccc------ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence 011122333 23456789999999999999999999999999999999866
Q ss_pred Cc-ceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 355 NA-PVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 355 ~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.. ....+.+.+++..|++++.||.|++||++
T Consensus 280 ~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 54 23334455566789999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-44 Score=305.95 Aligned_cols=293 Identities=19% Similarity=0.321 Sum_probs=242.5
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+|.||.++|++++|+|++++||||+.||+|+|||+.++..+... ..|...|.+++|+|+++++++++.|+.+++|
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE---ECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE---ecccccEEeeEeeccceeeeeecccceeecc
Confidence 3578999999999999999999999999999999999998665543 3466689999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
+.............. .+|......... ..+..+.....+.....++............+...+....+
T Consensus 125 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (340)
T d1tbga_ 125 NLKTREGNVRVSREL-----------AGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp ESSSSCSCCCEEEEE-----------CCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred cccccccccccceec-----------cccccccccccc-ccccccccccccccccccccccccccccccccceeEeeecc
Confidence 987664332211110 122223333333 34556777888999999999888877777788889999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
. +...++++++.|+.|++||++ .+.....+.+|...|++++|+|++++|++++.||.|++||++...
T Consensus 193 ~-~~~~~~~~~~~d~~v~i~d~~----~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~-------- 259 (340)
T d1tbga_ 193 A-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-------- 259 (340)
T ss_dssp C-TTSSEEEEEETTTEEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------
T ss_pred c-cccceeEEeecCceEEEEECC----CCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--------
Confidence 8 889999999999999999975 778888899999999999999999999999999999999998732
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.+..+...... ..+.+++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus 260 --------------------------~~~~~~~~~~~----~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 309 (340)
T d1tbga_ 260 --------------------------ELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp --------------------------EEEEECCTTCC----SCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------ccccccccccc----CceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence 22222211111 123456789999999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+|.++|++++|+|++++|+||+.||.|++||
T Consensus 310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-44 Score=308.83 Aligned_cols=295 Identities=12% Similarity=0.113 Sum_probs=230.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
+..+|+|++|+|||++||+|+.|+.|+|||.+++. ........+|..+|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 34789999999999999999999999999998763 33344456788899999999999999999999999999998765
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee----eEEcCCCCCeEEEEEeC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS----LRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~ 194 (409)
....... ..|...|.+++|+|+++.|++++.|+.|++|++...... .....|...|.+++|+
T Consensus 85 ~~~~~~~-------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~- 150 (371)
T d1k8kc_ 85 WKPTLVI-------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH- 150 (371)
T ss_dssp EEEEEEC-------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-
T ss_pred ccccccc-------------ccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccc-
Confidence 4322221 134457999999999999999999999999998765432 3346789999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccc--------------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFI--------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
|++.+|++|+.|+.+++||+.... ..+........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence 899999999999999999975211 112344556678899999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
.+ ...+..+..|.. .+.+++|+|++++|++|. |+.+++|
T Consensus 231 ~~----------------------------------~~~~~~~~~~~~------~v~s~~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 231 DK----------------------------------KMAVATLASETL------PLLAVTFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp GG----------------------------------TTEEEEEECSSC------CEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred ec----------------------------------ccceeeeecccc------cceeeeecCCCCEEEEEc-CCceEEE
Confidence 77 344556666552 345667889998888765 6766666
Q ss_pred EccCCceEEE-----------------------------------------eccCCcceeeeEEecCcC----eEEeecC
Q 015301 341 DLVSGAQVAK-----------------------------------------LDFHNAPVRDCCWHPIYP----MLISSSW 375 (409)
Q Consensus 341 d~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~s~~~~----~l~s~~~ 375 (409)
.......... ...|.+.|+++++.+.+. .|+|+|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~ 349 (371)
T d1k8kc_ 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349 (371)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred EeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC
Confidence 5433211000 013888999999987653 5899999
Q ss_pred CCeEEEEecCCCcc
Q 015301 376 DCNIVRWEIPGIGE 389 (409)
Q Consensus 376 dg~i~iw~~~~~~~ 389 (409)
||.|++||+++.+.
T Consensus 350 Dg~v~iW~~~~~~~ 363 (371)
T d1k8kc_ 350 DGGMSIWDVRSLES 363 (371)
T ss_dssp TSEEEEEEHHHHHH
T ss_pred CCeEEEEeCCcChh
Confidence 99999999966443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6e-43 Score=290.48 Aligned_cols=279 Identities=12% Similarity=0.129 Sum_probs=221.0
Q ss_pred eeeEEecCceeEeecc--ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 5 REVNYSGRGRFSAADS--CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~--~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.+++++|+|..++... ...++..........+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++..... ....
T Consensus 21 ~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~-~~~~ 99 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIP 99 (311)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEE
T ss_pred EEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc-cccc
Confidence 4689999998765533 344555545556668899999999999999999999999999999999988754432 2245
Q ss_pred cccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe-EEE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE-LVA 159 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~ 159 (409)
.|..+|.+++|+|++++|++++. +..+++|++++++..... .+|...|.+++|+|++++ |++
T Consensus 100 ~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l---------------~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL---------------TGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC---------------CCCSSCEEEEEECSSSSCEEEE
T ss_pred cccCccccccccccccccccccccccccccccccccccccccc---------------cccccccccccccccceeeecc
Confidence 56779999999999999999875 456999999877643221 245557999999999886 778
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-------eeecccc
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-------VLMGHLE 232 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~ 232 (409)
|+.|+.|++||+++++....+..|..+|++++|+ |++++|++++.|+.|++||++ ...... ...+|..
T Consensus 165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~----~~~~~~~~~~~~~~~~~h~~ 239 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSG 239 (311)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSS
T ss_pred cccccccccccccccccccccccccccccccccC-ccccccccccccccccccccc----cccccccccccccccccccc
Confidence 8999999999999999999999999999999999 799999999999999999976 333222 2346889
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.|.+++|+|++++|++++.||.|++||+++ ++.+..+..+......
T Consensus 240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t----------------------------------~~~~~~l~~~~~~~~~ 285 (311)
T d1nr0a1 240 SVFGLTWSPDGTKIASASADKTIKIWNVAT----------------------------------LKVEKTIPVGTRIEDQ 285 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------TEEEEEEECCSSGGGC
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCC----------------------------------CcEEEEEECCCCccce
Confidence 999999999999999999999999999987 3445555544321111
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.. .+.++++.|++++.||.|++||.+
T Consensus 286 ---~~--~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 286 ---QL--GIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ---EE--EEEECSSCEEEEETTCCEEEEETT
T ss_pred ---EE--EEEecCCEEEEEECCCEEEEEeCC
Confidence 11 223346789999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-42 Score=288.20 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=221.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
+.+.||.++|++++|+|+|++||+|+.||+|++||++++...... ...|...|++++|+|++++ ++++.|+.+++|+
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS--SCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 578899999999999999999999999999999999988655442 3456778999999999875 5566799999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
.............. .+...+.+++|+|+++.++++ .++.+.+|+.. +..... ....+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s 145 (299)
T d1nr0a2 83 AGGSGVDSSKAVAN------------KLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--ISYNSSCVALS 145 (299)
T ss_dssp SSSSSSCTTSCCEE------------ECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--CSSCEEEEEEC
T ss_pred cCCccccccccccc------------ccccccccccccccccccccc-ccccccccccc--cccccc--ccccccccccc
Confidence 87654332222221 123368899999999877665 46789999954 333322 34567899999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCcee-eeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRAN-GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+++++|++++.||.|++||++ ..... .....|...|.+++|+|++++|++++.|+.|++||+.+....
T Consensus 146 -~~~~~l~~g~~dg~i~~~d~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------ 214 (299)
T d1nr0a2 146 -NDKQFVAVGGQDSKVHVYKLS----GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL------ 214 (299)
T ss_dssp -TTSCEEEEEETTSEEEEEEEE----TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE------
T ss_pred -ccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence 899999999999999999975 33322 244568899999999999999999999999999998763221
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce--EEE
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ--VAK 350 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~ 350 (409)
.....+.+|. ..+.+++|+|++++|++|+.||.|++||+++++. ...
T Consensus 215 -------------------------~~~~~~~~h~------~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 263 (299)
T d1nr0a2 215 -------------------------AHTNSWTFHT------AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263 (299)
T ss_dssp -------------------------SCCCCCCCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred -------------------------cccccccccc------cccccccccccccceEEEcCCCEEEEEECCCCCcceEEE
Confidence 1122333443 2345568999999999999999999999987653 333
Q ss_pred eccC-CcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 351 LDFH-NAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 351 ~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
...| ...|..+.| +++++|++++.||.|++||++
T Consensus 264 ~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 264 KGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred ecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 3344 446666655 557899999999999999985
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-41 Score=285.22 Aligned_cols=275 Identities=18% Similarity=0.212 Sum_probs=222.1
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCCc-----eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPW-----KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~-----~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
..|++|||||+++++++.. .+|++....... ...+|.+.|.+++|+|+|++|++|+.||+|++||+......
T Consensus 54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~- 132 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR- 132 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc-
Confidence 5789999999999986643 334332222211 33589999999999999999999999999999998765322
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.......|...+..++|+|++.++++++.++.|++|++.+++..... ..|...+.+++|++++..
T Consensus 133 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~---------------~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF---------------QGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---------------cccccccccccccccccc
Confidence 22334556678999999999999999999999999999887643221 134457999999999999
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++++.|+.+++||+++++.+..+. |...|.+++|+ +++++|++++.|+.+++||++ .... .....|...|.+
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~i~~ 270 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVN----KPDK-YQLHLHESCVLS 270 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----SSCE-EEECCCSSCEEE
T ss_pred cccccccccccccccccceeecccc-cccceEEEEEc-ccccccceecccccccccccc----cccc-ccccccccccce
Confidence 9999999999999999999887765 88999999999 889999999999999999975 3333 455678999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
++|+|++++|++++.||.|++||+.+. ..+..+. |. ..+
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~----------------------------------~~~~~~~-~~------~~v 309 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----------------------------------ASIFQSK-ES------SSV 309 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTC----------------------------------CEEEEEE-CS------SCE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC----------------------------------CEEEEcc-CC------CCE
Confidence 999999999999999999999998873 3333332 22 234
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
.+++|+|++++|++|+.||.|+|||+
T Consensus 310 ~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 310 LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 56689999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-40 Score=281.29 Aligned_cols=286 Identities=20% Similarity=0.292 Sum_probs=224.4
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCC------------------ceeecCCCCeEEEEECCCCCEEEEEeCCCc
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGP------------------WKVDGMNSRVYTSQFSNDGSFFVAASQESN 63 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~------------------~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~ 63 (409)
..|++|||||+++++++.. .+|+....... ....+|...|++++|+|+|++|++|+.||.
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~ 144 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence 5799999999999886522 33332211111 123467888999999999999999999999
Q ss_pred EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 64 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
|++|+...+..... ..+|...|.++.|++++..+++++.++.+++||..+.......... .
T Consensus 145 v~i~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~- 205 (388)
T d1erja_ 145 IRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---------------D- 205 (388)
T ss_dssp EEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---------------S-
T ss_pred cccccccccccccc---cccccccccccccccccccccccccceeeeeeeccccccccccccc---------------c-
Confidence 99999998865554 3456779999999999999999999999999999876543322211 1
Q ss_pred eeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE-------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 144 GIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
...++.+.+ ++++|++++.|+.|++||..++.....+ .+|...|.+++|+ +++++|++++.||.|++||++
T Consensus 206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcEEEEecc
Confidence 244455554 8899999999999999999988876654 3688999999999 899999999999999999986
Q ss_pred ccc--------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 216 CFI--------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 216 ~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
... ...........|...|.+++|+|++++|++++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~------------------------- 339 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------------------- 339 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------------
Confidence 321 12233445667889999999999999999999999999999987
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
++.+..+.+|..............|+|++++|++|+.||+|+||+++
T Consensus 340 ---------~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 340 ---------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ---------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ---------CcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 56677888887665555555566789999999999999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-39 Score=274.89 Aligned_cols=304 Identities=17% Similarity=0.228 Sum_probs=227.2
Q ss_pred ecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 29 PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 29 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
+.+....|+||.+.|.+ +++++|++||||+.||+|+|||+.+++.+.. ..+|...|.+++|+|+ +|++++.|+.
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~---~~~h~~~V~~v~~~~~--~l~s~s~D~~ 78 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMRDN--IIISGSTDRT 78 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE---EeCCCCCEEEEEeCCC--ccccceeccc
Confidence 44566789999999865 3666899999999999999999998866544 4567889999999874 8999999999
Q ss_pred EEEEEcCCCccccccceeceeee-----------------eeeecCCCCc------ceeeEEEEEcCCCCeEEEEEecCe
Q 015301 109 VNIVDVGSSARESLANVTEIHKG-----------------LDFSADGDED------EFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
+++|+.................. +.+....... ..........+....+++++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence 99999987654322211110000 0000000000 001112233446677889999999
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
|++||....+.+..+.+|...+..+.+ ++.++++++.||.|++||++ ....+..+..|...+.+++++ +++
T Consensus 159 i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~ 229 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNI 229 (342)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred EEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecc----cceeeeEecccccceeEEecC--CCE
Confidence 999999999999999989887776655 57899999999999999975 677888889999999888776 569
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
|++++.|+.|++||+...+ ....+..+...... +. ++++++
T Consensus 230 l~s~s~d~~i~iwd~~~~~----------------------------------~~~~~~~~~~~~~~---~~--~~~~~~ 270 (342)
T d2ovrb2 230 LVSGNADSTVKIWDIKTGQ----------------------------------CLQTLQGPNKHQSA---VT--CLQFNK 270 (342)
T ss_dssp EEEEETTSCEEEEETTTCC----------------------------------EEEEECSTTSCSSC---EE--EEEECS
T ss_pred EEEEcCCCEEEEEeccccc----------------------------------ccccccccceeeec---ee--ecccCC
Confidence 9999999999999998732 22223222211111 11 233356
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEec-----cCCcceeeeEEecCcCeEEeecCCCe----EEEEecCC
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLD-----FHNAPVRDCCWHPIYPMLISSSWDCN----IVRWEIPG 386 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~----i~iw~~~~ 386 (409)
+++++|+.||.|++||+++++.+.++. +|...|++++|+|++.+|++|+.||+ |++||++.
T Consensus 271 ~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 799999999999999999999988774 57788999999999999999998885 99999875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.5e-40 Score=273.70 Aligned_cols=295 Identities=12% Similarity=0.119 Sum_probs=219.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeeeeeeeecccc-cceEEEEEeCC--CCcEEEEEecCCEEEEEEcCC
Q 015301 41 SRVYTSQFSNDGSFFVAASQES-NIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSP--DQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~~~~ 116 (409)
+.+++++|+|+|+.||.++.+. .|+.|+...... .......+| ...|++++|+| ++.+|++|+.||+|++||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~-~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV-PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS-CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc-cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3468899999999999887554 345566443322 222233444 45799999998 568999999999999999977
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
++........... ....|..+|.+++|+++++++++++. ++.+.+|+..+++.+..+.+|...|.+++|+|
T Consensus 97 ~~~~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 97 DKESNSVEVNVKS-------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169 (325)
T ss_dssp EGGGTEEEEEEEE-------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS
T ss_pred Ccceeeeeccccc-------ccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc
Confidence 6543332221110 01234557999999999999988765 67899999999999999999999999999995
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCce---eeeeeccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
....++++++.|+.+++||.+ ..+. ......|...|.+++|+|+ +.+|++++.|+.|++||+++
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~----~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-------- 237 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGP----PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-------- 237 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETT----TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--------
T ss_pred cccceEEEeeccccccccccc----ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc--------
Confidence 555568889999999999965 3332 2334567788999999996 67899999999999999987
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
++.+..+.+|.... ...++++.+ |++++|++++.|+.|+|||+++++++..
T Consensus 238 --------------------------~~~~~~l~~~~~~v--~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 238 --------------------------GEFLKYIEDDQEPV--QGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp --------------------------CCEEEECCBTTBCC--CSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred --------------------------cccccccccccccc--ccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 34455566555322 223344443 5789999999999999999999999988
Q ss_pred eccCCcc--eeeeEEecCc-CeEEeecCCCeEEEEec
Q 015301 351 LDFHNAP--VRDCCWHPIY-PMLISSSWDCNIVRWEI 384 (409)
Q Consensus 351 ~~~~~~~--v~~~~~s~~~-~~l~s~~~dg~i~iw~~ 384 (409)
+..|... +..+++.+.+ .+|++++.||.|++||+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 8766544 3444444333 47899999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-38 Score=268.68 Aligned_cols=322 Identities=14% Similarity=0.202 Sum_probs=237.6
Q ss_pred EecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc
Q 015301 9 YSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALR 85 (409)
Q Consensus 9 ~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 85 (409)
+++||+++++++.+ .+|+....+...++.+|.++|++++|+|+ .+|++|+.|++|++|+........... ...+.
T Consensus 19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~-~~~~~ 96 (355)
T d1nexb2 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE-GHNST 96 (355)
T ss_dssp EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC-CCSSC
T ss_pred EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc-ccccc
Confidence 45567888886543 45554444445688999999999999985 589999999999999999885554433 33334
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecC--------CCCcceeeEEEEEcCCCCeE
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSAD--------GDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l 157 (409)
.......+++++.++++++.|+.|++||+.+..................... ...|...+ ..+.++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~ 174 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIV 174 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--ccccccccee
Confidence 4567778889999999999999999999987654322221111100000000 00122223 3345678899
Q ss_pred EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+++..|+.|++||+.+++.+....++...+.++.++ +++..+++++.|+.|++||++ .+.....+.+|...|.++
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLL 249 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCCCEE
T ss_pred eeecccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeeecc----cccccccccccccccccc
Confidence 999999999999999999999999999999999999 889999999999999999965 778888899999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+++ +++|++++.||.|++||+++.. ..+..|......
T Consensus 250 ~~~--~~~l~~~~~dg~i~iwd~~~~~------------------------------------~~~~~~~~~~~~----- 286 (355)
T d1nexb2 250 RLS--DKFLVSAAADGSIRGWDANDYS------------------------------------RKFSYHHTNLSA----- 286 (355)
T ss_dssp EEC--SSEEEEECTTSEEEEEETTTCC------------------------------------EEEEEECTTCCC-----
T ss_pred ccc--cceeeeeecccccccccccccc------------------------------------eecccccCCceE-----
Confidence 987 4689999999999999997632 122222211111
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEE-EeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
...+++++++|++| .||.|++||+++++++. .+.+|.++|++++|+|+ .++++++.||.++||.+
T Consensus 287 ~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 287 ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 11355677777766 48999999999999885 56789999999999986 47888899998766543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-38 Score=262.57 Aligned_cols=277 Identities=19% Similarity=0.314 Sum_probs=237.0
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+|+|||++.++++++. ..+|++........+.+|.+.|.+++|+|++.++++++.++.+.+|+.........
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT-- 96 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC--
T ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccc--
Confidence 3678999999999888654 45666666666778999999999999999999999999999999999887644433
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...|...+.++.|+|+++.+++++.|+.+++||+.+++...... .|...+.+++|+|++++|++
T Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 97 -MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT---------------GHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp -CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------------CCSSCEEEEEECTTSSEEEE
T ss_pred -cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc---------------cCCCcceeeecccCCCEEEE
Confidence 44566689999999999999999999999999998876432221 23446899999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC-------------------CCcEEEEeeCCCeEEEecccccccC
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-------------------TGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
++.|+.|++|++.+++....+..|...+.+++|+|. .+.++++++.|+.|++||++ .
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~----~ 236 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----T 236 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----T
T ss_pred EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC----C
Confidence 999999999999999999999999999999999832 23578999999999999965 7
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
+..+..+.+|...|.+++++|++++|++++.||.|++||+++ ++.+
T Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------------------------------~~~~ 282 (317)
T d1vyhc1 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------------------------------KRCM 282 (317)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT----------------------------------SCCC
T ss_pred CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC----------------------------------CcEE
Confidence 788888999999999999999999999999999999999987 4556
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
..+.+|.. .+.+++|+|++++|++|+.||+|+|||
T Consensus 283 ~~~~~h~~------~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 283 KTLNAHEH------FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCSS------CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEcCCCC------CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 77777763 355678999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.3e-39 Score=274.15 Aligned_cols=264 Identities=13% Similarity=0.112 Sum_probs=205.7
Q ss_pred ceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 86 WTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+|++++|+|++++||+|+.|+.|++||..+++......+ .+|..+|.+++|+|++++|++++.|+.
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-------------~gH~~~V~~l~fsp~~~~l~s~s~D~~ 74 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-------------KEHNGQVTGVDWAPDSNRIVTCGTDRN 74 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-------------ECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-------------cCCCCCEEEEEECCCCCEEEEEECCCe
Confidence 4799999999999999999999999999987654332221 146678999999999999999999999
Q ss_pred EEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 166 IYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 166 i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
|++||+.++... ..+..|...|.+++|+ |+++.|++++.|+.+++|++...............|...|.+++|+|++
T Consensus 75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEEEeecccccccccccccccccccccccc-cccccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence 999999877644 4456789999999999 8999999999999999999763222222344456788999999999999
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
++|++++.|+.+++||+............... ........+.....|. ..+.+++|+|
T Consensus 154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~------~~v~~~~~s~ 211 (371)
T d1k8kc_ 154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----------------SKMPFGELMFESSSSC------GWVHGVCFSA 211 (371)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----------------SCCCTTCEEEECCCCS------SCEEEEEECS
T ss_pred cceeccccCcEEEEEeeccCcccccccccccc----------------ccccceeeeeeccCcc------CcEEEEEeec
Confidence 99999999999999998764322211110000 0011122233333443 2345678999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++|. |+.+++|....
T Consensus 212 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 212 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS 273 (371)
T ss_dssp SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence 999999999999999999999999999999999999999999998887665 77777776544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-37 Score=260.02 Aligned_cols=287 Identities=17% Similarity=0.237 Sum_probs=218.1
Q ss_pred CceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 33 PWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 33 ~~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
..+|+||.+.| +|++| ++++||||+.||+|+|||+.+++.+.. ..+|...|.+++|+|+ .+|++++.|+.|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i 78 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHG-GILVSGSTDRTVRV 78 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE---EECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE---EECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence 35799999886 66665 578999999999999999998866554 4567789999999986 58999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-----------
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI----------- 180 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----------- 180 (409)
|+............. .+........+.+++.++++++.|+.|++||+.+.......
T Consensus 79 w~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 79 WDIKKGCCTHVFEGH-------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp EETTTTEEEEEECCC-------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred ccccccccccccccc-------------cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 999887654332221 12234667788899999999999999999999876543221
Q ss_pred ------------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 181 ------------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 181 ------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
..|...+.... +++++++++..|+.+++||++ ..+......++...+.++.++|++.++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCIS 218 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ccccccceeeeeeeccccccccc---cccceeeeecccceeeeeecc----cccceeeeeccccccccccccccceeeec
Confidence 22333333333 467899999999999999975 67777788888899999999999999999
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
++.|+.|++||+++ +..+..+.+|.... .++.+ ++++|
T Consensus 219 ~~~d~~i~i~d~~~----------------------------------~~~~~~~~~h~~~v------~~~~~--~~~~l 256 (355)
T d1nexb2 219 ASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALV------GLLRL--SDKFL 256 (355)
T ss_dssp EETTSCEEEEETTT----------------------------------CCEEEEECCCSSCC------CEEEE--CSSEE
T ss_pred ccccceEEeeeccc----------------------------------cccccccccccccc------ccccc--cccee
Confidence 99999999999987 34556666665332 22334 35799
Q ss_pred EEEeCCCeEEEEEccCCceEEEeccCCcceeee-EEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC-CWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 329 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
++|+.||.|++||+.++.... ..|...+..+ .+++++++|+++ .||.|++||+++++..
T Consensus 257 ~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 257 VSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV 316 (355)
T ss_dssp EEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred eeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 999999999999998876544 4466666666 456676666665 5899999999887654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-36 Score=253.07 Aligned_cols=283 Identities=16% Similarity=0.140 Sum_probs=208.7
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecC----CCceeecCC-CCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVN----GPWKVDGMN-SRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~----~~~~l~~h~-~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
.-+++|+|+|..++..... .+..+.... ....+.+|. ..|++++|+| +|.+||+|+.||+|+|||+..+..
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~ 99 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 99 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence 3478999999877654322 232222221 123667775 6899999998 668999999999999999875432
Q ss_pred eee-----eeecccccceEEEEEeCCCCcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 75 IQK-----DIETKALRWTITDTSLSPDQRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 75 ~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
... ......|.++|.+++|++++++|++++. ++.+.+|+.++++..... .+|...|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~h~~~v~~ 164 (325)
T d1pgua1 100 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV---------------SGHSQRINA 164 (325)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC---------------CSCSSCEEE
T ss_pred eeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee---------------eeccccccc
Confidence 211 1123446678999999999999988764 667999999876542221 245568999
Q ss_pred EEEcCCCCe-EEEEEecCeEEEEECCCCeeeeEE---cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce
Q 015301 148 VKFSTDGQE-LVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 148 ~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 223 (409)
++|+|++++ +++++.|+.+++||+...+....+ ..|...|.+++|+|..+.+|++++.||.|++||++ .++.
T Consensus 165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~----~~~~ 240 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----SGEF 240 (325)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----TCCE
T ss_pred ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec----cccc
Confidence 999998876 667888999999999888776655 45778899999996568999999999999999965 7778
Q ss_pred eeeeeccccceeEEEEc---CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 224 NGVLMGHLEGITFIDSR---RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 224 ~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
+..+.+|..++..+.|+ |++++|++++.|+.|++||+++ ++.+
T Consensus 241 ~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~----------------------------------~~~~ 286 (325)
T d1pgua1 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT----------------------------------SKCV 286 (325)
T ss_dssp EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT----------------------------------TEEE
T ss_pred cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC----------------------------------CCEE
Confidence 88888888887666655 6899999999999999999987 3445
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
..+..+..........+ .+.+ +.+|++++.||.|++||+
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 287 QKWTLDKQQLGNQQVGV--VATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEECCTTCGGGCEEEE--EEEE-TTEEEEEETTSCEEEEET
T ss_pred EEEEecCCcccCeEEEE--EECC-CCEEEEEECCCEEEEEEC
Confidence 55544433222211111 1222 457899999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-37 Score=262.15 Aligned_cols=313 Identities=11% Similarity=0.035 Sum_probs=220.6
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w 112 (409)
..+++|.+.|++|+|+|++++||+|+.||+|+|||++.+..........+|..+|.+++|+|+ +.+|++|+.||.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 356799999999999999999999999999999999876555454445567889999999986 5689999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE----EcCC--CCC
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAH--KSD 186 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~--~~~ 186 (409)
++............. ........+.++...+++++.++.+++||++++..... ...+ ...
T Consensus 85 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNE--------------ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp CSSSSSSEEECBSCC--------------CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred ecccccccccccccc--------------cccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence 998765433322111 11244555667888999999999999999865433222 2222 233
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEE-cCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDS-RRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
.....+. +.++.+++++.|+.|++||++........ .....+...+.+..+ ..++..+++++.||.+.+|++.....
T Consensus 151 ~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~ 228 (342)
T d1yfqa_ 151 NKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred eeeeeee-ccCCceeeecCCCcEEEEecccCccccee-eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence 4455666 67889999999999999998632222222 222233444555554 45678899999999999999876433
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
...... ...................+.+++|+|++++|++|+.||.|++||+.++
T Consensus 229 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 229 DYNSSK-------------------------RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp STTCTT-------------------------CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeccc-------------------------cceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 221110 0000111111111112233456789999999999999999999999999
Q ss_pred ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 346 AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+.+..+..+ ..+..++|+|++++|++++.|+.+++|......
T Consensus 284 ~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~ 325 (342)
T d1yfqa_ 284 KKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325 (342)
T ss_dssp EEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT
T ss_pred cEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCC
Confidence 999888643 345567888999999999989999998765433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-36 Score=256.02 Aligned_cols=277 Identities=18% Similarity=0.281 Sum_probs=220.5
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee-ee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK-DI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~ 79 (409)
+.+++||||+.++++++.+ .+|..........+.+|..+|.+++|+|+++++++|+.|+.+++|+......... ..
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 137 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEE
T ss_pred EEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccce
Confidence 5789999999999987654 4454444444457889999999999999999999999999999999876533222 22
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...+|.......... .+..+.....+.....+............ .+...+....+.+.+.++++
T Consensus 138 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 138 ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFT---------------GHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEE---------------CCSSCEEEEEECTTSSEEEE
T ss_pred ecccccccccccccc-ccccccccccccccccccccccccccccc---------------ccceeEeeeccccccceeEE
Confidence 334444444444443 45667778888988888877654322221 12235888999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--eeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--LMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~~ 237 (409)
++.|+.|++||+++++.+..+.+|...|++++|+ |++++|++++.||.|++||++ ....... ...+...+.++
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~----~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEE
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeec----ccccccccccccccCceEEE
Confidence 9999999999999999999999999999999999 899999999999999999976 3333333 34566789999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+.+ +..+..+.+|.. .+.
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~----------------------------------~~~~~~~~~H~~------~V~ 316 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALK----------------------------------ADRAGVLAGHDN------RVS 316 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSS------CEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCC----------------------------------CcEEEEEcCCCC------CEE
Confidence 9999999999999999999999987 456677777763 355
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEE
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
+++|+|++++|++|+.||.|+|||
T Consensus 317 ~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 317 CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeCCCCEEEEEccCCEEEEeC
Confidence 678999999999999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=244.89 Aligned_cols=272 Identities=24% Similarity=0.307 Sum_probs=214.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
...+|...|+|++| ||++||||+.||+|+|||+++++.+.. ..+|...|.+++| ++++|++|+.|+.|++|++
T Consensus 10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~---l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCEeeeec--ccceeeccccccccccccc
Confidence 34578889999765 789999999999999999998865554 3567789999987 5789999999999999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee---eeEEcCCCCCeEEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSDVNTVC 191 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~ 191 (409)
..+......... ......+.+....++++..++.+.+|+..+... ...+..|...+..+.
T Consensus 83 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 145 (293)
T d1p22a2 83 NTGEMLNTLIHH-----------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 145 (293)
T ss_dssp SSCCEEEEECCC-----------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred cccccccccccc-----------------ccccccccccccceeecccccceeEeeccccccccccccccccccccccce
Confidence 887653332211 122334555667889999999999999987653 344567888888888
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
+. ...+++++.|+.+++||++ ..+.+..+.++...+..+.++ +..+++++.||.|++||+++.
T Consensus 146 ~~---~~~~~~~s~d~~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-------- 208 (293)
T d1p22a2 146 FD---DKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-------- 208 (293)
T ss_dssp EE---TTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------
T ss_pred ec---ccccccccCCCceeeecCC----CCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc--------
Confidence 76 4578889999999999975 677788888888888888775 568999999999999999873
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC-------
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS------- 344 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~------- 344 (409)
..+..+.++..... .+++++.+|++|+.||.|++||+.+
T Consensus 209 --------------------------~~~~~~~~~~~~v~--------~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 254 (293)
T d1p22a2 209 --------------------------ACLRVLEGHEELVR--------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254 (293)
T ss_dssp --------------------------CEEEEECCCSSCEE--------EEECCSSEEEEEETTSCEEEEEHHHHTSTTSC
T ss_pred --------------------------eeeeeecccceeee--------eccccceEEEEEcCCCEEEEEECCCCcccccc
Confidence 33444444442211 3556789999999999999999854
Q ss_pred --CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 345 --GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 345 --~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
...+..+.+|.+.|++++|+ +++|+|+|.||+|++||
T Consensus 255 ~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 255 AGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 34678889999999999994 57899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-36 Score=249.08 Aligned_cols=280 Identities=14% Similarity=0.159 Sum_probs=203.3
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCCCcee-ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKV-DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
.+.+|+|||||+++++++.+ .+|+.........+ .+|...|++++|+|+|+++ +++.|+.+++|+..........
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSK 92 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTS
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccc
Confidence 36789999999999886644 44543332333344 4799999999999999755 5567899999998765322222
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....+...+.+++|+|+++.+++++ ++.+.+|+....... . ....+.+++|+|++++|+
T Consensus 93 ~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~-----~--------------~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 93 AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV-----P--------------ISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE-----E--------------CSSCEEEEEECTTSCEEE
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccc-----c--------------cccccccccccccccccc
Confidence 22234455789999999998777655 678999985432110 0 011478899999999999
Q ss_pred EEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 159 AAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+++.|+.|.+||+++++... ....|...|++++|+ +++++|++++.|+.|++||+.... .......+..|..+|+++
T Consensus 153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACV 230 (299)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-cccccccccccccccccc
Confidence 99999999999998877544 345689999999999 789999999999999999975211 112234566789999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+++..... ......+.. .....
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~--------------------------------~~~~~~~~~--~~v~~-- 274 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHP--------------------------------IIIKGAHAM--SSVNS-- 274 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTSCC--------------------------------EEETTSSTT--SCEEE--
T ss_pred cccccccceEEEcCCCEEEEEECCCCCcce--------------------------------EEEecCCCC--CcEEE--
Confidence 999999999999999999999998743211 111111111 11111
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+++++++|++++.|+.|++||+.
T Consensus 275 --~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 275 --VIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp --EEEEETTEEEEEETTSCEEEEECC
T ss_pred --EEECCCCEEEEEeCCCEEEEEecc
Confidence 133457899999999999999984
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-36 Score=249.62 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=204.7
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+|.||.++|++++|+| |+||+.||+|++||+.++ ...|...|.++++++++ .+++++.|+++++|
T Consensus 6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 457899999999999998 999999999999998753 23577789999998764 57889999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
++...+. ...+..+++++++..++++ .++.+.+|+..+++.+..+..+ ..+. ++
T Consensus 73 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 126 (287)
T d1pgua2 73 GITKHEF----------------------GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPGS--AV 126 (287)
T ss_dssp TEEEEEC----------------------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCEE--EE
T ss_pred ccccccc----------------------ccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-ceee--ee
Confidence 8754321 1136778888888766655 5677899999999888877643 3444 44
Q ss_pred eCCCCcEEEEeeCC-CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 193 ADETGHLIFSGSDD-SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 193 ~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
+ ++++.+++++.+ +.+++|++.. ..........|...+++++|+|++.+|++++.||.|++||+.+.....
T Consensus 127 ~-~~~~~~~v~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~---- 198 (287)
T d1pgua2 127 S-LSQNYVAVGLEEGNTIQVFKLSD---LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT---- 198 (287)
T ss_dssp E-ECSSEEEEEETTTSCEEEEETTE---EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred e-ccCcceeeeccccceeeeeeccc---cceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc----
Confidence 5 456677777666 4799999751 122222334577889999999999999999999999999998743211
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee------eecCCCCEEEEEeCCCeEEEEEccC-
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP------EYSTAQKYIYTGSSDNSVYIYDLVS- 344 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~~~~l~~~~~dg~v~i~d~~~- 344 (409)
..+.+|... +....+++ .+.+++.+|++|+.|+.|++||+++
T Consensus 199 -----------------------------~~~~~h~~~--v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 199 -----------------------------SRWAFRTSK--INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp -----------------------------CCSCCCSSC--EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred -----------------------------ccccccccc--cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence 112233211 11111111 2345678999999999999999977
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
.+.+..+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus 248 ~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 248 MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 56778888999999999999986 5889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-35 Score=251.73 Aligned_cols=300 Identities=12% Similarity=0.141 Sum_probs=205.9
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee---eeeeecccccce------EEEEEeCC-CCcEEEEEe
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI---QKDIETKALRWT------ITDTSLSP-DQRFLVYAS 104 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~------v~~~~~s~-~~~~l~~~~ 104 (409)
..++|.+.|+++++++ ++++|++.|++|+|||..+.... ........|... ...+..++ ++..+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4579999999999875 68999999999999997654211 111111112112 22223332 345678899
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-----CCeEEEEEecCeEEEEECCCCe----
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-----GQELVAAGSDNFIYVYDLQANK---- 175 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~~~---- 175 (409)
.||.|++|++............... ......+...+..++|.++ +.++++++.||.+.+|++....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLD-----LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEC-----CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred CCCcEEEEEccCCCceeeeeccccc-----eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence 9999999998765432222111100 0111233445777888764 4678999999999999985321
Q ss_pred --------------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCcee------eeeecccccee
Q 015301 176 --------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN------GVLMGHLEGIT 235 (409)
Q Consensus 176 --------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~v~ 235 (409)
.......+...+.+++|+ +++ +|++|+.||+|++||++ .++.+ ..+.+|..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~lasgs~Dg~i~iwd~~----~~~~~~~~~~~~~l~~h~~~V~ 235 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSIR 235 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC---CCCCCEE
T ss_pred eeeeeeccceecccceecccCCCCcEEEEEEC-CCC-EEEEEeCCCcEEEEeec----ccccccccccccccccccceEE
Confidence 011123456678999999 665 88999999999999975 33333 34567899999
Q ss_pred EEEEcCCCCeEEEEeCCCc---EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 236 FIDSRRDGRYFISNGKDQT---TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
+++|+|++++|++++.|++ |++||+++........... ........+.+|.
T Consensus 236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~---------------------~~~~~~~~~~gH~----- 289 (393)
T d1sq9a_ 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---------------------HSSQASLGEFAHS----- 289 (393)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBS-----
T ss_pred EcccccccceeeeecCCCCcceeeecccccceeeeeecccc---------------------ccccceeeeeccc-----
Confidence 9999999999999999874 9999998754433221100 0112233445565
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee----eeEEecCcCeEEeec
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR----DCCWHPIYPMLISSS 374 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~s~~ 374 (409)
..+++++|+|++++|++|+.|++|+|||+++++++.++++|.+.|. .++|+|++..+++++
T Consensus 290 -~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 290 -SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp -SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred -CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 3466778999999999999999999999999999999999998876 478999998877664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.7e-35 Score=250.43 Aligned_cols=322 Identities=12% Similarity=-0.010 Sum_probs=221.6
Q ss_pred eEEec-CceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeeeeeeccc
Q 015301 7 VNYSG-RGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 7 ~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~ 83 (409)
--||| ||++++......+..+-.........+|...|.+++|+|||++|++++.+. .|++||.++++.. . ...
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~---~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-K---FEE 83 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-E---CCC
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-E---eeC
Confidence 35899 999888755443333322333344458999999999999999998876553 7999999987432 2 345
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
|...|.+++|+|++++|++++.++.+++|++.+++...... .+...+.+++|+|+|++|+.+..
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---------------SREAMITDFTISDNSRFIAYGFPL 148 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------CSSSCCCCEEECTTSCEEEEEEEE
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeeee---------------cccccccchhhccceeeeeeeccc
Confidence 66789999999999999999999999999998876543322 12335888999999999987643
Q ss_pred ---------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc---cCCceeeeeecc
Q 015301 163 ---------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI---SKGRANGVLMGH 230 (409)
Q Consensus 163 ---------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~ 230 (409)
++.+++||+.+++... +..+...+..++|+ ++++.|++++.++.+.+||..... ........+..|
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 226 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred cccceeeccccceeeeccccCceee-eccccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecc
Confidence 4579999999887654 44577788999999 899999999999999999964211 011112222333
Q ss_pred ccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 231 LEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 231 ~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
...+..+.+++++..++++..+. .+..++... .....+..
T Consensus 227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 271 (360)
T d1k32a3 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP-----------------------------------GDYRMIIP 271 (360)
T ss_dssp TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC-----------------------------------BCEEEEEE
T ss_pred cCccccceECCCcCcccccceeecccccceeecccCc-----------------------------------CceeEeee
Confidence 34444445555555444332221 111111111 11111222
Q ss_pred ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 306 HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+.. ....+.....++++.++++++.++.|++||+.+++.. .|.+.|.+++|+|||++|++++.||.|++||+.
T Consensus 272 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 272 LES---SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp CSS---EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred cCC---CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence 211 1122333445555677888999999999999887643 344579999999999999999999999999998
Q ss_pred CCcccC
Q 015301 386 GIGEAP 391 (409)
Q Consensus 386 ~~~~~~ 391 (409)
.++++.
T Consensus 345 ~~~~~~ 350 (360)
T d1k32a3 345 KPEDER 350 (360)
T ss_dssp CTTSCE
T ss_pred CCCcce
Confidence 876653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-32 Score=232.65 Aligned_cols=272 Identities=13% Similarity=0.152 Sum_probs=184.6
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC-CcceeeEEEEEcC-CC
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD-EDEFGIFSVKFST-DG 154 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~ 154 (409)
.....++|...|.++++++ ++|++++.|+.|++||..+.+........... ...... .|......+..+. ++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH----FVHKSGLHHVDVLQAIERDAFEL 79 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE----ECCTTCEEEEEEEEEEETTTEEE
T ss_pred eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee----eeccCCceEeeeEeeeccCCCCC
Confidence 3345678999999999874 68999999999999998765432211110000 000000 0111122222222 34
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeE-----E-----cCCCCCeEEEEEeCC----CCcEEEEeeCCCeEEEecccccccC
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLR-----I-----PAHKSDVNTVCFADE----TGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~-----~-----~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
.++++++.||.|++|++........ . ..+...+..++|.+. .+.++++++.||.+++|++......
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 5677888999999999764432111 1 224456778888732 2478999999999999997521100
Q ss_pred --------------CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccc
Q 015301 221 --------------GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 221 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.........+...+.+++|+|++ +|++|+.||.|++||+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~---------------------- 216 (393)
T d1sq9a_ 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR---------------------- 216 (393)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----------------------
T ss_pred cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc----------------------
Confidence 00111222345568899999987 88999999999999998732
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC---eEEEEEccCCceEEEec-----------
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN---SVYIYDLVSGAQVAKLD----------- 352 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~----------- 352 (409)
.+..+............+.+++|+|+|++|++|+.|+ .|++||+++++.+..+.
T Consensus 217 ------------~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~ 284 (393)
T d1sq9a_ 217 ------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 284 (393)
T ss_dssp ------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred ------------cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceee
Confidence 2333322222222224567778999999999999886 59999999998887764
Q ss_pred --cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 353 --FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 353 --~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+|.+.|++++|+|++++|+|++.|++|++||+.+++.
T Consensus 285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 7999999999999999999999999999999988643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.4e-31 Score=221.16 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=187.4
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 158 (409)
...+|+..|++++|+|++++||+|+.||+|++||+.+........... +|..+|.+++|+|+ +.+|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~------------~h~~~V~~v~f~~~~~~~l~ 73 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------------RYKHPLLCCNFIDNTDLQIY 73 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------------ECSSCEEEEEEEESSSEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec------------CCCCCEEEEEEeCCCCCEEE
Confidence 356788899999999999999999999999999997765322221111 34558999999986 55789
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccceeE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITF 236 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~ 236 (409)
+|+.|+.|++|++..+........+........+.+++...+++++.++.+++||++..............+ ......
T Consensus 74 sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d1yfqa_ 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp EEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred Ecccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeee
Confidence 999999999999998887776665555554444444788899999999999999987433333333332222 223455
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
..+.+.+..+++++.|+.|++||++........ ........ ...
T Consensus 154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-------------------------------~~~~~~~~--~~~--- 197 (342)
T d1yfqa_ 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT-------------------------------IEESGLKY--QIR--- 197 (342)
T ss_dssp EEEEECSSEEEEEESTTEEEEEESSCCTTCCCE-------------------------------EEECSCSS--CEE---
T ss_pred eeeeccCCceeeecCCCcEEEEecccCccccee-------------------------------eeeccccc--cee---
Confidence 667788899999999999999999874322111 00011110 000
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEccCCceE---------E------EeccCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV---------A------KLDFHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~---------~------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
....++.++..+++++.||.+.+|+....... . ....|...|++++|+|++++|+||+.||.|++
T Consensus 198 ~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~v 277 (342)
T d1yfqa_ 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred eeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEE
Confidence 11123446789999999999999998643211 1 11346678999999999999999999999999
Q ss_pred EecCCCcc
Q 015301 382 WEIPGIGE 389 (409)
Q Consensus 382 w~~~~~~~ 389 (409)
||+.+.+.
T Consensus 278 WD~~~~~~ 285 (342)
T d1yfqa_ 278 WNLQTRKK 285 (342)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99987654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.4e-30 Score=209.25 Aligned_cols=271 Identities=20% Similarity=0.275 Sum_probs=202.0
Q ss_pred EEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc
Q 015301 8 NYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (409)
Q Consensus 8 ~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~ 84 (409)
++++||+++++++.+ .+|+....+...++.+|.++|++++| ++++|++|+.|+.|++|++..+...........
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~- 96 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE- 96 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccc-
Confidence 457789998886554 55665555556688999999999987 578999999999999999998855544322221
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
....+.+....++++..++.+.+|+.............. .|...+..+.+. ...+++++.|+
T Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~--~~~~~~~s~d~ 158 (293)
T d1p22a2 97 ----AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV------------GHRAAVNVVDFD--DKYIVSASGDR 158 (293)
T ss_dssp ----CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC------------CCSSCEEEEEEE--TTEEEEEETTS
T ss_pred ----ccccccccccceeecccccceeEeecccccccccccccc------------ccccccccceec--ccccccccCCC
Confidence 223444566789999999999999998765433222211 234467777765 45688889999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.|++||+.+++.+..+.++...+..+.++ +..+++++.||.|++||++ ....+....+|...+.. +++++.
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~--~~~~~~ 229 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRC--IRFDNK 229 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEE--EECCSS
T ss_pred ceeeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecc----cceeeeeecccceeeee--ccccce
Confidence 99999999999999999999999888876 5689999999999999975 67777778888887765 456788
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
+|++++.||.|++||++......... ....+..+.+|... +.+++| +
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~~~~~~H~~~------V~~v~~--d 276 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPA-------------------------GTLCLRTLVEHSGR------VFRLQF--D 276 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCT-------------------------TTTEEEEECCCSSC------CCCEEE--C
T ss_pred EEEEEcCCCEEEEEECCCCccccccC-------------------------CceeeEEecCCCCC------EEEEEE--c
Confidence 99999999999999987633221111 12345666777632 233344 5
Q ss_pred CCEEEEEeCCCeEEEEE
Q 015301 325 QKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d 341 (409)
+++|++|+.||+|+|||
T Consensus 277 ~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEecCCEEEEeC
Confidence 67899999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6e-29 Score=209.10 Aligned_cols=283 Identities=17% Similarity=0.226 Sum_probs=188.5
Q ss_pred EEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc
Q 015301 8 NYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (409)
Q Consensus 8 ~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~ 84 (409)
++++||+++++++. ..+|+....+...++.+|.+.|.+++|+|+ +|++++.|+++++|+............ +
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~---~ 96 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG---H 96 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC---C
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc---c
Confidence 46778888888654 356665555555688999999999999974 899999999999999987644333221 1
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee-------------------------eeecCCC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL-------------------------DFSADGD 139 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 139 (409)
...+...... ...++.+..|+.+.+|+..+++.............. .......
T Consensus 97 ~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 174 (342)
T d2ovrb2 97 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174 (342)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred ceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEc
Confidence 1123333222 233444455555555555443321111000000000 0000001
Q ss_pred CcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 219 (409)
+|...+. .+.+++.++++++.||.|++||++.++.+..+..|...+.++.++ +++|++++.||.|++||+.
T Consensus 175 ~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~d~~i~iwd~~---- 245 (342)
T d2ovrb2 175 GHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIK---- 245 (342)
T ss_dssp CCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETT----
T ss_pred Ccccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC---CCEEEEEcCCCEEEEEecc----
Confidence 2333343 445578899999999999999999999999999999999999887 4699999999999999975
Q ss_pred CCceeeeee---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 220 KGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 220 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
.......+. .|...+.++.++ ++++++++.||.|++||++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg--------------------------------- 290 (342)
T d2ovrb2 246 TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG--------------------------------- 290 (342)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---------------------------------
T ss_pred cccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC---------------------------------
Confidence 444444443 355566666665 578999999999999999883
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe----EEEEEcc
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS----VYIYDLV 343 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~----v~i~d~~ 343 (409)
+.+..+..... ......+++++|+|++.+|++|+.||+ |++||+.
T Consensus 291 -~~i~~~~~~~~-~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 291 -EFIRNLVTLES-GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp -CEEEEEEECTT-GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred -CEEEEEecccC-CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 33333321111 011145677889999999999999985 9999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=4.6e-29 Score=216.10 Aligned_cols=320 Identities=11% Similarity=0.016 Sum_probs=205.9
Q ss_pred ECCCCC--EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 48 FSNDGS--FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 48 ~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
++.|.+ ++++.+.||+|+|||+.+++.+..+. .. ..+..++|||||++|++++.|+.+++||+.+++......+
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-TG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE-CC---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe-CC---CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence 444433 55778889999999999996666543 22 2589999999999999999999999999998875443332
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
... .+|...+.+++|+|||+++++++ .++.+.+||..+++....+..|...+....+.+......++.+
T Consensus 102 ~~~----------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 171 (426)
T d1hzua2 102 KIG----------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 171 (426)
T ss_dssp ECC----------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred eCC----------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC
Confidence 211 12344577788899999876554 6899999999999988877666555444444422222223333
Q ss_pred CC-----------CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccccccccc
Q 015301 205 DD-----------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 205 ~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 272 (409)
.| +.+.+++.. ...........+...+..+.++|++++++++.. +..+.+++..+..........
T Consensus 172 ~d~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 248 (426)
T d1hzua2 172 HEHPEFIVNVKETGKVLLVNYK---DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 248 (426)
T ss_dssp SSSSEEEEEETTTTEEEEEECS---SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEecCCCCeEEEEEec---cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence 33 344444422 111122233456777889999999998877764 567889998876554333211
Q ss_pred cccccccccc-----------cccccc---------ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--
Q 015301 273 LRDYDWDYRW-----------MEYPSY---------ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT-- 330 (409)
Q Consensus 273 ~~~~~~~~~~-----------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-- 330 (409)
.......... ...... .........+....+.+|. ..++.++|+||+++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~------~~v~~v~~sPdg~~l~v~~ 322 (426)
T d1hzua2 249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG------GGSLFIKTHPKSSHLYVDT 322 (426)
T ss_dssp SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS------SCCCCEECCTTCSEEEECC
T ss_pred CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC------CceeEEEcCCCCceEEEee
Confidence 1110000000 000000 0001111223444455554 23456689999999995
Q ss_pred -----EeCCCeEEEEEccCCceEEEe---------ccCCcceeeeEEecCcCeE-Eee----cCCCeEEEEecCCCccc
Q 015301 331 -----GSSDNSVYIYDLVSGAQVAKL---------DFHNAPVRDCCWHPIYPML-ISS----SWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 331 -----~~~dg~v~i~d~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l-~s~----~~dg~i~iw~~~~~~~~ 390 (409)
++.+++|+|||+.+++...++ ..|...|.+++|||||+++ +++ +.||.|++||..+.+..
T Consensus 323 ~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred cCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence 456789999999998876554 2356679999999999966 332 46899999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.2e-28 Score=199.67 Aligned_cols=258 Identities=10% Similarity=0.043 Sum_probs=186.8
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
+.+++|+| +++++.+.....+.. .....+|...|.+++|++++ .+++++.|+++++|++... ..
T Consensus 16 I~~l~~s~----l~sgs~Dg~v~~Wd~--~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~-- 79 (287)
T d1pgua2 16 ITALTVNP----LISGSYDGRIMEWSS--SSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EF-- 79 (287)
T ss_dssp EEEEETTT----TEEEETTSCEEETTT--TEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------EC--
T ss_pred eEEEEECc----EEEEeCCCeEEEEEC--CCCCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------cc--
Confidence 56788887 344333322222222 22456899999999999765 5789999999999997532 11
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
...+..+.+++++..++++. ++.+.+|+..+++........ ....++++++..+++++.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~ 139 (287)
T d1pgua2 80 -GSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN------------------SPGSAVSLSQNYVAVGLEE 139 (287)
T ss_dssp -SSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS------------------SCEEEEEECSSEEEEEETT
T ss_pred -ccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccc------------------ceeeeeeccCcceeeeccc
Confidence 22577889999887777655 667888988777653322211 2234567788888888876
Q ss_pred C-eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce-eeeeeccccceeEEEEc
Q 015301 164 N-FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSR 240 (409)
Q Consensus 164 ~-~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~ 240 (409)
+ .+++|++...+....+. .|...+++++|+ +++.+|++|+.||.|++||+. .... ...+..|..+|.+++|+
T Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~----~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQ----SREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEECCSCCCSSCEEEEEEC
T ss_pred cceeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeec----ccccccccccccccccceeeec
Confidence 5 79999998766655553 477899999999 899999999999999999975 3433 34467899999999998
Q ss_pred CC----------CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 241 RD----------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 241 ~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
|. +.+|++++.|+.|++||+++.. ..+..+.+|..
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---------------------------------~~~~~~~~h~~-- 259 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---------------------------------KIIKALNAHKD-- 259 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTT---------------------------------CCEEETTSSTT--
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCC---------------------------------eEEEEeCCCCC--
Confidence 74 4689999999999999987621 33455556663
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
.+.++.|+|++ .|++++.|+.|++|++
T Consensus 260 ----~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 260 ----GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ----CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 23455677775 5888999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=1.8e-28 Score=207.86 Aligned_cols=284 Identities=10% Similarity=0.011 Sum_probs=202.4
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC--EEEEEEcCCCccc
Q 015301 44 YTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNIVDVGSSARE 120 (409)
Q Consensus 44 ~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~~w~~~~~~~~ 120 (409)
..-.||| ||+++|+++ +|.|++||++++.... . .|...|.+++|+|||+.|++++.+. .|++||..+++..
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~ 79 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE 79 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence 3467999 999999987 4789999998874432 1 4667899999999999999877554 7999999887654
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
... .|...+.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+ +++++|
T Consensus 80 ~~~----------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l 142 (360)
T d1k32a3 80 KFE----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-DNSRFI 142 (360)
T ss_dssp ECC----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-TTSCEE
T ss_pred Eee----------------CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc-cceeee
Confidence 322 234479999999999999999999999999999999988888899999999999 889988
Q ss_pred EEee----------CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 201 FSGS----------DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 201 ~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+.+. .++.+++||+. .+ ....+..+...+..+.|+|+|++|++++.++.+.+||..........
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~----~~-~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~- 216 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDME----GR-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV- 216 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETT----TT-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS-
T ss_pred eeeccccccceeeccccceeeeccc----cC-ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecc-
Confidence 8543 44568999964 33 33444557778889999999999999999999999997653211100
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC-----eEEEEEccCC
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN-----SVYIYDLVSG 345 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~v~i~d~~~~ 345 (409)
.........+.. ......+++++..++++..+. .+..+++..+
T Consensus 217 --------------------------~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T d1k32a3 217 --------------------------VSKPFVIPLIPG------SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264 (360)
T ss_dssp --------------------------CBEEEEEESSTT------CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB
T ss_pred --------------------------ccceEEEecccC------ccccceECCCcCcccccceeecccccceeecccCcC
Confidence 001111111111 011234566666665554332 2444444444
Q ss_pred ceEEEeccCCcceeeeEEecCc---CeEEeecCCCeEEEEecCCCcc
Q 015301 346 AQVAKLDFHNAPVRDCCWHPIY---PMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+. ..+..+.+.+..+.+.+.+ .++++++.++.|++||+.+.+.
T Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 310 (360)
T d1k32a3 265 DY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 310 (360)
T ss_dssp CE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred ce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence 43 3344455555555555544 4788999999999999987543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=4.3e-28 Score=209.31 Aligned_cols=320 Identities=11% Similarity=-0.039 Sum_probs=202.1
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI 128 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (409)
+++.-++++.+.||+|.|||.++++.+..+... . .+..++|||||+++++++.|+.+++||+.+++......+...
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~---~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-Y---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-S---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-C---CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence 333344688999999999999999776664322 2 589999999999999999999999999988765433322211
Q ss_pred eeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcC-----------CCCCeEEEEEeCCC
Q 015301 129 HKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPA-----------HKSDVNTVCFADET 196 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~ 196 (409)
..|...+.+..|+|||++| +++..++.|.+||.++++++..+.. +......+.++|..
T Consensus 105 ----------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg 174 (432)
T d1qksa2 105 ----------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174 (432)
T ss_dssp ----------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred ----------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence 1223346677788999986 5677799999999999998877653 34456678888443
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
..++++...++.|.+||.. ..+..... ..+...+..+.|+|+|+++++++. ++.+.++|..+............
T Consensus 175 ~~~~vs~~~~~~i~~~d~~----~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~ 250 (432)
T d1qksa2 175 PEFIVNVKETGKILLVDYT----DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 250 (432)
T ss_dssp SEEEEEETTTTEEEEEETT----CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEEccCCeEEEEEcc----CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcc
Confidence 4455677788999999964 33332222 234567889999999998877765 55788889877544332211110
Q ss_pred ccccc---------cc----cccccccceecc--------ccCccceeeeec----------ccceeeeeEE--------
Q 015301 275 DYDWD---------YR----WMEYPSYARRLK--------HPHDQSLATYKG----------HSVLRTLIRC-------- 315 (409)
Q Consensus 275 ~~~~~---------~~----~~~~~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~-------- 315 (409)
..... .. ..........+. ....+....... +.........
T Consensus 251 ~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~ 330 (432)
T d1qksa2 251 TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 330 (432)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred ccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCC
Confidence 00000 00 000000000000 000000111110 0000000000
Q ss_pred -EEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeec-----CCCeEEEEecCCCcc
Q 015301 316 -YFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS-----WDCNIVRWEIPGIGE 389 (409)
Q Consensus 316 -~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~ 389 (409)
..+.+ .||++.|++++.|+.+++|++.++..+ ..|...|.+++|||||++++.+. .+|.|.|||..+.++
T Consensus 331 ~~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 331 ISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp HHTCEE-EEEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred eeeEEE-EEechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 01122 267888889999999999988665433 35777899999999999775442 478999999998876
Q ss_pred c
Q 015301 390 A 390 (409)
Q Consensus 390 ~ 390 (409)
.
T Consensus 407 ~ 407 (432)
T d1qksa2 407 K 407 (432)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=4.7e-25 Score=181.84 Aligned_cols=265 Identities=14% Similarity=0.089 Sum_probs=194.7
Q ss_pred EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeee
Q 015301 56 VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDF 134 (409)
Q Consensus 56 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 134 (409)
++++.|++|.+||+++++.+... .... .+..++|+|||++|+ +++.++.|++||+.+++........
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i-~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-------- 73 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATI-PVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-------- 73 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE-ECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------
T ss_pred EEECCCCEEEEEECCCCeEEEEE-ECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc--------
Confidence 46678899999999999655543 3332 578999999999885 5567899999999987754322111
Q ss_pred ecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEe
Q 015301 135 SADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVW 212 (409)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw 212 (409)
..+..++|++++..+++++ .++.+.+|+..+++....+..+ ..+.+++++ +++..+ +++..++.+.+|
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~dg~~~~~~~~~~~~~~~~ 143 (301)
T d1l0qa2 74 --------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVI 143 (301)
T ss_dssp --------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEE
T ss_pred --------ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEee-cCCCeeeeeeccccceeee
Confidence 1368899999998766554 5779999999999988887744 567889999 666655 566678889999
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-CcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+.. .......+.. ...+..+.++|++..+++++.+ +.+.+|+....
T Consensus 144 ~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 190 (301)
T d1l0qa2 144 NTV----TKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------------------------- 190 (301)
T ss_dssp ETT----TTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------------------------
T ss_pred ecc----ccceeeeccc-CCCceEEEeeccccceeeecccccccccccccce----------------------------
Confidence 954 5555555543 4557889999999988887765 56667766542
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC---CCeEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
........+. ......++++++.++++.. ++.|++||+.+++.+..+.. ...+.+++|+|||+
T Consensus 191 ------~~~~~~~~~~-------~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~ 256 (301)
T d1l0qa2 191 ------SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGK 256 (301)
T ss_dssp ------EEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSS
T ss_pred ------eeeecccccC-------CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCC
Confidence 1112222211 1234568888988876643 46899999999999888874 45679999999999
Q ss_pred eE-EeecCCCeEEEEecCCCcc
Q 015301 369 ML-ISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 369 ~l-~s~~~dg~i~iw~~~~~~~ 389 (409)
+| ++++.|+.|++||+.+++.
T Consensus 257 ~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 257 KVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEECCCCeEEEEECCCCeE
Confidence 76 6778899999999988754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.5e-26 Score=200.27 Aligned_cols=312 Identities=11% Similarity=0.042 Sum_probs=205.1
Q ss_pred eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcE
Q 015301 22 HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRF 99 (409)
Q Consensus 22 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~ 99 (409)
..+++....+...++..|. .+..++|||||++|++++.|++|++||+.+++.. .......+|...+.+++|+|||++
T Consensus 44 v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~ 122 (426)
T d1hzua2 44 IALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122 (426)
T ss_dssp EEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred EEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence 3455544444445677664 6999999999999999999999999999887533 233334556667888899999998
Q ss_pred EEEE-ecCCEEEEEEcCCCccccccceec------------eeeeeeeecCC----------------------------
Q 015301 100 LVYA-SICAIVNIVDVGSSARESLANVTE------------IHKGLDFSADG---------------------------- 138 (409)
Q Consensus 100 l~~~-~~dg~i~~w~~~~~~~~~~~~~~~------------~~~~~~~~~~~---------------------------- 138 (409)
|+++ ..++.+++||..++.......... ....+......
T Consensus 123 l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 202 (426)
T d1hzua2 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202 (426)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE
T ss_pred EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE
Confidence 7655 588999999998876432221100 00000000000
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEE--EEeeCCCeEEEec
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLI--FSGSDDSLCKVWD 213 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd 213 (409)
..+...+..+.|+|++++++++.. +..+.+++..+++.+..... +........+.++....+ +..+.|+.+.+|+
T Consensus 203 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~ 282 (426)
T d1hzua2 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282 (426)
T ss_dssp EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence 023345678999999998887765 56789999999988776642 222233344432333222 2344678888887
Q ss_pred cccc---ccCCceeeeeeccccceeEEEEcCCCCeEEE-------EeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 214 RRCF---ISKGRANGVLMGHLEGITFIDSRRDGRYFIS-------NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 214 ~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
.... ....+....+.+|...+..++|+|++++|++ ++.|++|++||+.+.+.......
T Consensus 283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~------------ 350 (426)
T d1hzua2 283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP------------ 350 (426)
T ss_dssp CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC------------
T ss_pred ccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec------------
Confidence 5421 1224667778899999999999999999995 45688999999988543321100
Q ss_pred cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-----eCCCeEEEEEccCCceEEEeccCCcce
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-----SSDNSVYIYDLVSGAQVAKLDFHNAPV 358 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-----~~dg~v~i~d~~~~~~~~~~~~~~~~v 358 (409)
+.....+ ......+++++|||||++++.+ +.+|.|+|||.++++....++++.
T Consensus 351 ----------------~~~~~~~---~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~--- 408 (426)
T d1hzua2 351 ----------------IAEWADL---GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR--- 408 (426)
T ss_dssp ----------------HHHHHCC---CSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT---
T ss_pred ----------------cchhccc---CCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC---
Confidence 0000000 0111335677899999977543 357899999999999999998764
Q ss_pred eeeEEecCcCeEE
Q 015301 359 RDCCWHPIYPMLI 371 (409)
Q Consensus 359 ~~~~~s~~~~~l~ 371 (409)
.++|+|++-+
T Consensus 409 ---~~tp~Gk~~~ 418 (426)
T d1hzua2 409 ---LITPTGKFNV 418 (426)
T ss_dssp ---CCSEEEEEEH
T ss_pred ---ccCCCceEeE
Confidence 3457777643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=2.9e-25 Score=186.11 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=188.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+++++++.|++|+|||+++++.+... ....+...+.+++|+|||++++ +++.++.|.+||+.+++...........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~-- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc--
Confidence 58999999999999999998665543 3333344678899999999875 5678999999999998764433322111
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
.+...+..++|+|++++++++.. +..+.+||..+++....+.. ...+..++|+ +++.+
T Consensus 79 --------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~ 148 (337)
T d1pbyb_ 79 --------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSK 148 (337)
T ss_dssp --------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSC
T ss_pred --------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEc-CCCCE
Confidence 11224667999999999988764 46788999999998888774 4568899999 89999
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe------------------------CCCcE
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG------------------------KDQTT 255 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------------~dg~i 255 (409)
+++++.+ +.+||.. .......+..+.. .....+.|++..+.... .++.+
T Consensus 149 l~~~~~~--~~~~d~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (337)
T d1pbyb_ 149 LYGLGRD--LHVMDPE----AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp EEEESSS--EEEEETT----TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEEcCC--cceeeee----cCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccE
Confidence 9888654 6788864 4444444433221 11222333333222111 12223
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccce-eeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
.+|+..+. ... ..+..+. ...+...++|++.+++.+ +
T Consensus 222 ~~~~~~~~----------------------------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~ 259 (337)
T d1pbyb_ 222 LTMDLETG----------------------------------EMAMREVRIMD------VFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp EEEETTTC----------------------------------CEEEEEEEECS------SCEEEEEECTTSSEEEEE--E
T ss_pred EEEEcCCC----------------------------------cEEEEEecCCC------cceEEEEecccceEEEEc--c
Confidence 33333321 111 1111111 223445678889888776 5
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.|++||+.+++.+..+. +...+.+++|+|||++|++++.||.|++||+.+.+.
T Consensus 260 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred ccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 789999999999998886 667889999999999999999999999999988654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=1.8e-25 Score=188.09 Aligned_cols=307 Identities=12% Similarity=0.098 Sum_probs=191.2
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccc
Q 015301 46 SQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
++|++++++|++++.+++|.+||+++++.+...... +...+.+++|+|||++++ ++..++.|.+||+.+++......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~--~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC--CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 578999999999999999999999999665543221 223578999999999875 45578999999999887643332
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------cCeEEEEECCCCeeeeEEcC--CCCCeEEE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------DNFIYVYDLQANKCSLRIPA--HKSDVNTV 190 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~--~~~~v~~~ 190 (409)
..... ..+...+..++|+|||+++++++. ++.+.+|+..+++....+.. ....+..+
T Consensus 80 ~~~~~---------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T d1jmxb_ 80 LSSVP---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150 (346)
T ss_dssp SCCST---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred ccccc---------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEE
Confidence 21111 111224667999999999987753 56788999888766544322 23345556
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 269 (409)
.++ +++.+++++ +.+.+|++. .......+..+ .....+.++|++..++.. ..++.+.+++..........
T Consensus 151 ~~~-~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (346)
T d1jmxb_ 151 RAA-DDGSLYVAG---PDIYKMDVK----TGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221 (346)
T ss_dssp EEC-TTSCEEEES---SSEEEECTT----TCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred Eec-CCCEEEEeC---CcceEEEcc----CCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCce
Confidence 665 666655543 458899964 55555555433 334455567766654433 23444444443221000000
Q ss_pred cccccccccccccccccccceeccccCccce-eeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
..... ........+........ .....+. ...+...+++++.+++.... +.|.+||..+++.+
T Consensus 222 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~ 285 (346)
T d1jmxb_ 222 DPATA---------DLLYGYLSVDLKTGKTHTQEFADLT------ELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLI 285 (346)
T ss_dssp --CCC---------EEEEEEEEEETTTCCEEEEEEEECS------SCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEE
T ss_pred eEeec---------cCCceEEEEECCCCceEEEEeeccc------ceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEE
Confidence 00000 00000000000001111 1111111 22344567777887777654 57999999999998
Q ss_pred EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 349 AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 349 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+. +...+.+++|+|||++|++++.||.|++||+.+.+.
T Consensus 286 ~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 286 KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp EEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence 8886 556799999999999999999999999999988654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.8e-23 Score=178.18 Aligned_cols=185 Identities=10% Similarity=0.027 Sum_probs=129.6
Q ss_pred EEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eeeeeecccccceEEEEEeCCCCcEE-
Q 015301 24 LSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFL- 100 (409)
Q Consensus 24 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l- 100 (409)
+++....+....+..| ..+..++|||||+++++++.|++|++||+.++.. .........|.+.+.+..|+|||++|
T Consensus 46 v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 46 LIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp EEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred EEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence 4443333444566666 4699999999999999999999999999987642 23333344566677788899999986
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceee-eeeeecCCCCcceeeEEEEEcCCCCeEEE-EEecCeEEEEECCCCeeee
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHK-GLDFSADGDEDEFGIFSVKFSTDGQELVA-AGSDNFIYVYDLQANKCSL 178 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~ 178 (409)
+++..++.|++||..+++............ ...+ .+......+.++|++..+++ ...++.|.+||..+.+...
T Consensus 125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~ 199 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY-----HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK 199 (432)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE-----ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred EEcCCCCeEEEEeCccccceeeeccCCccccceec-----cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence 667789999999999887654433211110 0111 12335778899999987655 4557899999998876544
Q ss_pred EEc-CCCCCeEEEEEeCCCCcEEEEee-CCCeEEEeccc
Q 015301 179 RIP-AHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRR 215 (409)
Q Consensus 179 ~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 215 (409)
... .+...+..++|+ |+++++++++ .++.+.++|.+
T Consensus 200 ~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 200 TTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp EEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETT
T ss_pred EEEEcccCccccceEC-CCCCEEEEeccccceEEEeecc
Confidence 332 355678899999 7888776665 45678888864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=1.7e-21 Score=160.24 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=178.8
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEE-EecCCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVY-ASICAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~~w~~~~~ 117 (409)
...+..++|+|||++|+ +++.++.|++||+.+++.+...... . .+..++|++++..+++ +..++.+.+|+..++
T Consensus 31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (301)
T d1l0qa2 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-S---SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-S---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-c---cccccccccccccccccccccceeeecccccc
Confidence 35678999999999875 6667899999999998666543322 2 4788999999986655 456779999999887
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
+....... ...+.++.|+|++..++.++ .++.+.+|+..+.+....+.. ...+..++++ ++
T Consensus 107 ~~~~~~~~----------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 168 (301)
T d1l0qa2 107 TVAGTVKT----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVT-PD 168 (301)
T ss_dssp EEEEEEEC----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEEC-TT
T ss_pred eeeeeccc----------------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEee-cc
Confidence 65333221 11478899999999876554 478899999999998887764 4567899999 66
Q ss_pred CcEEEEeeC-CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCccccccccc
Q 015301 197 GHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 197 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+..+++++. ++.+.+|+.. ......... ....+..+.+++++..++.+.. ++.|.+||+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~--------- 234 (301)
T d1l0qa2 169 GTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--------- 234 (301)
T ss_dssp SSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------
T ss_pred ccceeeeccccccccccccc----ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC---------
Confidence 666666655 4667777742 334434333 4456778999999998876543 468999999873
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE-EEEeCCCeEEEEEccCCceEEEe
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI-YTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+.+..+..+. ....++|+|||++| ++++.++.|++||+++++.+.++
T Consensus 235 -------------------------~~~~~~~~~~-------~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 235 -------------------------KITARIPVGP-------DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp -------------------------EEEEEEECCS-------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -------------------------eEEEEEcCCC-------CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 2233333222 12456899999977 56778999999999999999888
Q ss_pred cc
Q 015301 352 DF 353 (409)
Q Consensus 352 ~~ 353 (409)
..
T Consensus 283 ~v 284 (301)
T d1l0qa2 283 AV 284 (301)
T ss_dssp EC
T ss_pred eC
Confidence 63
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=4.3e-21 Score=162.91 Aligned_cols=298 Identities=11% Similarity=-0.045 Sum_probs=195.1
Q ss_pred eeeEEecCceeEeecc--------ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEe----------CCCcEEE
Q 015301 5 REVNYSGRGRFSAADS--------CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKV 66 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~--------~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~v 66 (409)
..+++||||+.++... ...+++....+...++..+.. ..++|||||++|++++ .++.|.+
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v 101 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence 5678999998654321 112222222222234545443 3799999999999875 3578999
Q ss_pred EEcCCCeeeeeeeeccccc----ceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 67 YNVDKNWKIQKDIETKALR----WTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
||..+++............ .....+.|+++++.+++.. .++.+.+|+....+.....
T Consensus 102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------- 164 (373)
T d2madh_ 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----------------- 164 (373)
T ss_pred EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-----------------
Confidence 9999986655433222211 1234578889988776654 3567888888765432111
Q ss_pred cceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCC------CCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 141 DEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHK------SDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
....++.++|+++.+ ++.+.|+.+.+|+...++.......+. .....+.+. ++ ..++..+.++.+.+|+
T Consensus 165 --~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 165 --SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-KS-GRIVWPVYSGKILQAD 240 (373)
T ss_pred --ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC-CC-ceEEEecCCceEEEEE
Confidence 135678899988765 567789999999999887766543221 122334444 33 4555667889999999
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
... ...........+........+.|.+...+..+.|+....+-
T Consensus 241 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------- 284 (373)
T d2madh_ 241 ISA--AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL---------------------------------- 284 (373)
T ss_pred cCC--CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe----------------------------------
Confidence 641 11122333334445555666666666566666665432221
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC--eEE
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP--MLI 371 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~ 371 (409)
..++..++....++.+.+||..+++.+..+. +...+.+++|+|||+ +++
T Consensus 285 ----------------------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v 335 (373)
T d2madh_ 285 ----------------------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYA 335 (373)
T ss_pred ----------------------------cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEE
Confidence 2235567778888999999999999998886 667889999999998 456
Q ss_pred eecCCCeEEEEecCCCccc
Q 015301 372 SSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 372 s~~~dg~i~iw~~~~~~~~ 390 (409)
+++.|+.|++||+.+++..
T Consensus 336 t~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 336 LSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EeCCCCeEEEEECCCCCEE
Confidence 8899999999999988764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.3e-21 Score=163.37 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=182.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
.+++++.|++|++|+++....+... ....+.+.+..++|+|||++|++++ .|+.|++|++..............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~---- 80 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---- 80 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE----
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc----
Confidence 3567778999999999765433322 2223445799999999999996655 589999999976643322111111
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEee-CCCe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGS-DDSL 208 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~ 208 (409)
+...+..++|+|||++|++++. ++.|.+|+......... ...+...+.++.++ ++++.+++++ .+..
T Consensus 81 --------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~~ 151 (333)
T d1ri6a_ 81 --------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQDR 151 (333)
T ss_dssp --------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGTE
T ss_pred --------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccce
Confidence 1124678999999999998875 67899998877655433 34567778899999 7777777666 5567
Q ss_pred EEEecccccccCCceee-----eeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANG-----VLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
+.+|+... ...... ...........++|++++..++... ..+...+|+..........
T Consensus 152 i~~~~~~~---~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------- 215 (333)
T d1ri6a_ 152 ICLFTVSD---DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC------------- 215 (333)
T ss_dssp EEEEEECT---TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-------------
T ss_pred eeEEEecc---CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-------------
Confidence 99998642 111111 1112334567899999998876654 4566777776542211100
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-eCCCeEEEEEccCCceEEEe---ccCCcce
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLVSGAQVAKL---DFHNAPV 358 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~---~~~~~~v 358 (409)
...................+.+++++++++.. ..++.+.+|++........+ ..+...+
T Consensus 216 -----------------~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 278 (333)
T d1ri6a_ 216 -----------------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP 278 (333)
T ss_dssp -----------------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC
T ss_pred -----------------eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCe
Confidence 00000000000111122345688899876655 45789999998765433332 2344567
Q ss_pred eeeEEecCcCeEEeec-CCCeEEEEecCC
Q 015301 359 RDCCWHPIYPMLISSS-WDCNIVRWEIPG 386 (409)
Q Consensus 359 ~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 386 (409)
.+++|+|||++|++++ .++.|.+|+++.
T Consensus 279 ~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 279 RGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp CCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 8999999999876654 568999997643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=3.1e-21 Score=161.97 Aligned_cols=288 Identities=9% Similarity=0.016 Sum_probs=189.8
Q ss_pred eEEecCceeEeeccce---EEEEeeecCCCceee-cCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 7 VNYSGRGRFSAADSCH---VLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
+++|++++|+++.+.. .+++....+...++. .|...+.+++|+|||++++ +++.++.|++||+.+++........
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 5799999999986643 333332222222344 4667789999999999874 5567899999999998666544322
Q ss_pred cc---ccceEEEEEeCCCCcEEEEEe------------cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE
Q 015301 82 KA---LRWTITDTSLSPDQRFLVYAS------------ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF 146 (409)
Q Consensus 82 ~~---~~~~v~~~~~s~~~~~l~~~~------------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (409)
.. +...+..++|+|||+++++++ .++.+.+|+..+++.......... ...+.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~ 148 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-------------PRQVY 148 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-------------CSSCC
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-------------cCceE
Confidence 21 222456789999999998775 367788888877664333221111 11355
Q ss_pred EEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc--------------------------EE
Q 015301 147 SVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH--------------------------LI 200 (409)
Q Consensus 147 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------------~l 200 (409)
.+.+++++..++. ++.+.+|++.+++.+..+..+.. +..+.++ +++. .+
T Consensus 149 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (346)
T d1jmxb_ 149 LMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSA-PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223 (346)
T ss_dssp CEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCC-CBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred EEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC-ccceEEe-ccccEEEEEecCCCceEeeeeeeeeccCceeE
Confidence 5677777765543 35689999999988887764432 2333344 2222 22
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+++..++.+.+||+. ...........+...+..+.+++++.+++.... +.+.+||+.+.
T Consensus 224 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~----------------- 282 (346)
T d1jmxb_ 224 ATADLLYGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR----------------- 282 (346)
T ss_dssp CCCEEEEEEEEEETT---TCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT-----------------
T ss_pred eeccCCceEEEEECC---CCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC-----------------
Confidence 333444556777753 122233445567778888999999888877654 57999998873
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcc
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 357 (409)
+.+..+.... .+.+++|+|||++|++++.|+.|++||+.+++.+.+++.+.+.
T Consensus 283 -----------------~~~~~~~~~~-------~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 283 -----------------KLIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp -----------------EEEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred -----------------cEEEEEcCCC-------CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 2233332211 1345689999999999999999999999999999999865543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3e-21 Score=161.43 Aligned_cols=251 Identities=12% Similarity=0.062 Sum_probs=172.2
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEec---------
Q 015301 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASI--------- 105 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~--------- 105 (409)
.+...+.+++|+|||+++ ++++.++.|.+||+.+++.+....... .+...+..++|+|++++++++..
T Consensus 31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence 345668899999999987 466788999999999986665443222 12234567899999999988763
Q ss_pred ---CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 106 ---CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 106 ---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
+..+.+||..+++....... ...+..++|+|+|+++++++ +.+.+||..+++....+..
T Consensus 111 ~~~~~~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~ 172 (337)
T d1pbyb_ 111 EVQPTRVALYDAETLSRRKAFEA----------------PRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEEC----------------CSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECS
T ss_pred cccccceeeccccCCeEEEeccc----------------cCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeec
Confidence 56788888887764332221 11477899999999999886 4578899999988877654
Q ss_pred CCCCeEEEEEeCCCC------------------------cEEEEeeCCCeEEEecccccccCCce-eeeeeccccceeEE
Q 015301 183 HKSDVNTVCFADETG------------------------HLIFSGSDDSLCKVWDRRCFISKGRA-NGVLMGHLEGITFI 237 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~ 237 (409)
+... ....+. +++ ..+..+..++.+.+||.. .+.. ......+...+..+
T Consensus 173 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 246 (337)
T d1pbyb_ 173 QSWE-AETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFST 246 (337)
T ss_dssp TTTT-TTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEE
T ss_pred CCcc-ccceec-CCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC----CCcEEEEEecCCCcceEEE
Confidence 3321 111111 111 111122334557778754 3332 23345566778888
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
.++|++.+++.. ++.+++||+.+. +.+..+.... ...
T Consensus 247 ~~~~~~~~~~~~--~~~i~v~d~~~~----------------------------------~~~~~~~~~~-------~~~ 283 (337)
T d1pbyb_ 247 AVNPAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPH-------SYY 283 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSS-------CCC
T ss_pred EecccceEEEEc--cccEEEEECCCC----------------------------------cEEEEEcCCC-------CEE
Confidence 999999887765 578999999883 2233322211 234
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
+++|+|||++|++++.++.|++||..+++.+.+++...
T Consensus 284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence 56899999999999999999999999999999887543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=3.5e-21 Score=162.35 Aligned_cols=299 Identities=11% Similarity=-0.006 Sum_probs=185.9
Q ss_pred CeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cC
Q 015301 42 RVYTSQFSNDGSFFVAAS-----QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------IC 106 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d 106 (409)
++.-.+.+|||+.+++.. .+..|.+||..+++.+...... ....++|+|||++|++++ .+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLPNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-----CCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence 344446689999987653 3567999999999666554322 233689999999888754 47
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHK 184 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~ 184 (409)
+.|++||..+++............. ........++|+|++++++++.. +..+.+|+..+++.+..+..+.
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRF--------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCC--------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred CEEEEEECCCCCEEEEEecCCccee--------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence 8999999998875443322111100 01112456899999999887754 5789999999999888776443
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee------eeccccceeEEEEcCCCCeEEEEeCCCcEEEe
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV------LMGHLEGITFIDSRRDGRYFISNGKDQTTKLW 258 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 258 (409)
... .+. ......++.+.||...++... ....... ...+...+....+.+++..++.++.++.+.+|
T Consensus 150 ~~~---~~~-~~~~~~~~~~~dg~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (355)
T d2bbkh_ 150 CYH---IFP-TAPDTFFMHCRDGSLAKVAFG----TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221 (355)
T ss_dssp EEE---EEE-EETTEEEEEETTSCEEEEECC----SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred cce---Eee-cCCcceEEEcCCCCEEEEEec----CCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEE
Confidence 211 111 122233333444444443321 0000000 11233345556778888889999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC----
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD---- 334 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---- 334 (409)
++............ .......... ........+++++++..++....+
T Consensus 222 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~----~~p~~~~~~~~~~d~~~~~~~~~~~~~~ 273 (355)
T d2bbkh_ 222 DLSSGDAKFLPAVE------------------------ALTEAERADG----WRPGGWQQVAYHRALDRIYLLVDQRDEW 273 (355)
T ss_dssp ECTTSSCEECCCEE------------------------SSCHHHHHTT----EEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ecCCCcEEEEeccC------------------------CcccceEeee----eeccceEEEEEeCCCCeEEEEeccCCce
Confidence 99874322111000 0000000000 000001224678888888776543
Q ss_pred ------CeEEEEEccCCceEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCCccc
Q 015301 335 ------NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 ------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|++||+.+++..
T Consensus 274 ~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 274 RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 469999999999988887 445689999999998 4567788999999999887653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.3e-19 Score=149.63 Aligned_cols=260 Identities=13% Similarity=0.164 Sum_probs=167.7
Q ss_pred ecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEEEc
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDV 114 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~ 114 (409)
..|.+.|..++|||||++|++++ .|+.|++|+++.............+...+..++|+|||++|++++. ++.+.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence 37889999999999999996554 5899999999876444333333333446778999999999998874 678999988
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeE------EcCCCCCe
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLR------IPAHKSDV 187 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~------~~~~~~~v 187 (409)
............. +...+.++.++|+++++++++. +..|.+|+......... ........
T Consensus 113 ~~~~~~~~~~~~~-------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p 179 (333)
T d1ri6a_ 113 EDGLPVGVVDVVE-------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 179 (333)
T ss_dssp ETTEEEEEEEEEC-------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCE
T ss_pred ccccceecccccC-------------CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCc
Confidence 7665433222111 1224778899999998888775 56799999876543221 12345667
Q ss_pred EEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeee------ccccceeEEEEcCCCCeEEEE-eCCCcEEEee
Q 015301 188 NTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLM------GHLEGITFIDSRRDGRYFISN-GKDQTTKLWD 259 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd 259 (409)
..++|+ +++..++. ....+...+|+............... ........+++++++++++.. ..++.+.+|+
T Consensus 180 ~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~ 258 (333)
T d1ri6a_ 180 RHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 258 (333)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEE
Confidence 889999 56665554 44666777877542111111111111 123446678899999876655 4577899998
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVY 338 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~ 338 (409)
+..... ......+.... .....++|+|||++|++++. ++.|.
T Consensus 259 ~~~~~~----------------------------------~~~~~~~~~~~---~~p~~~a~spDGk~l~va~~~~~~v~ 301 (333)
T d1ri6a_ 259 VSEDGS----------------------------------VLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHIS 301 (333)
T ss_dssp ECTTSC----------------------------------CEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred EcCCCC----------------------------------EEEEEEEeCCC---CCeeEEEEeCCCCEEEEEECCCCeEE
Confidence 876221 11111111000 11235579999998877654 68999
Q ss_pred EEEc--cCCce
Q 015301 339 IYDL--VSGAQ 347 (409)
Q Consensus 339 i~d~--~~~~~ 347 (409)
+|++ .+|++
T Consensus 302 v~~id~~tG~l 312 (333)
T d1ri6a_ 302 VYEIVGEQGLL 312 (333)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCcE
Confidence 9955 55543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.2e-20 Score=157.39 Aligned_cols=300 Identities=14% Similarity=0.051 Sum_probs=182.1
Q ss_pred EEecCceeEeecc--------ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEc
Q 015301 8 NYSGRGRFSAADS--------CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNV 69 (409)
Q Consensus 8 ~~s~dg~~~~~~~--------~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~vw~~ 69 (409)
+.||||+.++... ...+++....+...++..+ .+..++|||||++|++++ .|+.|++||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 5689998654311 1222222111112234443 344799999999887653 4789999999
Q ss_pred CCCeeeeeeeeccccc----ceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 70 DKNWKIQKDIETKALR----WTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
.+++..........+. .....++|+|++++++++. .+..+.+|+..+++............. + ...
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~ 157 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--F------PTA 157 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--E------EEE
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--e------ecC
Confidence 9986665543322211 1235579999999988775 456899999988875433322111100 0 011
Q ss_pred eeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
....+.++++++.++.... ++.+.+++...... .+...+....+. .++..++.++.++.+++|++... ...
T Consensus 158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~ 229 (355)
T d2bbkh_ 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSG--DAK 229 (355)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTS--SCE
T ss_pred CcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeecccc-CCCCeEEEecCCCeEEEEecCCC--cEE
Confidence 2345667777766655433 34455555443322 234445556777 66778888899999999997521 111
Q ss_pred eeeeeecc----------ccceeEEEEcCCCCeEEEEeCC----------CcEEEeeCCCCccccccccccccccccccc
Q 015301 223 ANGVLMGH----------LEGITFIDSRRDGRYFISNGKD----------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 223 ~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
.......+ ......+++++++..++....+ ..|.+||..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~------------------- 290 (355)
T d2bbkh_ 230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG------------------- 290 (355)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------------
T ss_pred EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC-------------------
Confidence 11111111 1233457888888877765443 36888888772
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC--EEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK--YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
+.+..+... .....++|+|||+ ++++++.|+.|++||+++++.+.++.++...-..
T Consensus 291 ---------------~~~~~~~~~-------~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~ 348 (355)
T d2bbkh_ 291 ---------------ERLAKFEMG-------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 348 (355)
T ss_dssp ---------------CEEEEEEEE-------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred ---------------cEEEEecCC-------CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccE
Confidence 333333221 2345678999997 4566778999999999999999999877665555
Q ss_pred eEEecC
Q 015301 361 CCWHPI 366 (409)
Q Consensus 361 ~~~s~~ 366 (409)
+.+.++
T Consensus 349 i~~~d~ 354 (355)
T d2bbkh_ 349 ITTADM 354 (355)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=6.1e-18 Score=142.85 Aligned_cols=305 Identities=5% Similarity=-0.128 Sum_probs=184.0
Q ss_pred cCCCCeEEEEECCCCCEEE---EEeCCCc--EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe--------
Q 015301 38 GMNSRVYTSQFSNDGSFFV---AASQESN--IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-------- 104 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~---t~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------- 104 (409)
.+.++...++..++++... +...++. +.+||..+++.+...... . ...++|+|||+.|++++
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~-~----~~~~a~spDg~~i~~~~~~~~~~~~ 91 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-F----LSLAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-T----TCEEEECTTSSCEEEEEEEETTTTS
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCC-C----CCcceECCCCCEEEEEcccCccccc
Confidence 3455666667788888542 2334444 667798888665543322 2 12478999999998764
Q ss_pred --cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEc
Q 015301 105 --ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 105 --~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 181 (409)
.|+.|++||..+++............. ........++|+|||++|+++. .++.+.+||+.+++....+.
T Consensus 92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~--------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 92 GKRTDYVEVFDPVTFLPIADIELPDAPRF--------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEEETTSCSC--------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred cccCCeEEEEECCCCcEeeeecCCcccee--------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence 367899999998875443322111000 0011234689999999998886 47999999999999988887
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
.+.... +.|.....++..+.||.+.++++......... ......+...+....+.+++..+.+. .+.+.+++
T Consensus 164 ~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~ 237 (368)
T d1mdah_ 164 SASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGD 237 (368)
T ss_dssp CSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEE
T ss_pred ccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEe
Confidence 654432 12234556777788888888886421111000 01122233445566777777655543 45566666
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-----
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD----- 334 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----- 334 (409)
............. .......... .........++++++..++....+
T Consensus 238 ~~~~~~~~~~~~~------------------------~~~~~~~~~~----~~~~g~~~~a~~~~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 238 IPAAGATMKAAID------------------------GNESGRKADN----FRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp CCSSCCEEECCCC------------------------SSCTHHHHTT----EEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred ecCCceEEEeecc------------------------cccceeeeee----ecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence 5542221111000 0000000000 000001123567777776655322
Q ss_pred ----CeEEEEEccCCceEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCCCccc
Q 015301 335 ----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 ----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|.+||..+++.+..+. +...+.+++|+|||+ +++++..|+.|++||..+++..
T Consensus 290 ~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 290 LAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred ecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 369999999999988886 446789999999997 3466778999999999887653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.77 E-value=2e-16 Score=138.03 Aligned_cols=151 Identities=12% Similarity=0.106 Sum_probs=100.2
Q ss_pred eeEEecCceeEeeccceEEEEeeecCCC------ceeecCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcC
Q 015301 6 EVNYSGRGRFSAADSCHVLSRYLPVNGP------WKVDGMNSRVYTSQFSNDGSFFVAASQ---------ESNIKVYNVD 70 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~------~~l~~h~~~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~~ 70 (409)
.+.|++|+.|+......+.......... ..+..|...|.++.|||||++|+.++. ++.+.|||+.
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~ 100 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence 4679999998877655443322222222 244556688999999999999998753 4678999999
Q ss_pred CCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC-----Ccceee
Q 015301 71 KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD-----EDEFGI 145 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v 145 (409)
+++ .. ....+...+..+.|||||+.||... ++.+.+|+..+++.......... ...+..... ......
T Consensus 101 ~~~-~~---~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~--~~~~~g~~d~~~~~~~~~~~ 173 (470)
T d2bgra1 101 KRQ-LI---TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE--DIIYNGITDWVYEEEVFSAY 173 (470)
T ss_dssp TTE-EC---CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT--TTEEESBCCHHHHHHTSSSS
T ss_pred CCc-cc---ccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCC--CcccccccceeeeeeecCCc
Confidence 884 32 2344555799999999999999864 77899999988765433321111 001111100 112234
Q ss_pred EEEEEcCCCCeEEEEEec
Q 015301 146 FSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d 163 (409)
..+.|+|||++|+....|
T Consensus 174 ~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 174 SALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp BCEEECTTSSEEEEEEEE
T ss_pred cccEECCCCCccceeEec
Confidence 568899999999998765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=3e-15 Score=126.44 Aligned_cols=276 Identities=8% Similarity=-0.111 Sum_probs=174.0
Q ss_pred eeEEecCceeEeeccc-------------eEEEEeeecCCCceeecCCCCe-------EEEEECCCCCEEEEEe--CCCc
Q 015301 6 EVNYSGRGRFSAADSC-------------HVLSRYLPVNGPWKVDGMNSRV-------YTSQFSNDGSFFVAAS--QESN 63 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~-------------~~~~~~~~~~~~~~l~~h~~~v-------~~~~~s~~~~~l~t~~--~d~~ 63 (409)
.++|||||++++.... ..+++....+....+..+.... ..+.|+++++.++... .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 5899999998776432 2233333223323444444333 4578899998776554 4567
Q ss_pred EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc
Q 015301 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 64 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
+.+|+......... ...+.++.++|+++.+ ++.+.|+.+.+|+................ ....
T Consensus 150 ~~~~~~~~~~~~~~-------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 213 (373)
T d2madh_ 150 VGLVVQGGSSDDQL-------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT---------AAQN 213 (373)
T ss_pred eEEeeccCCeEEEE-------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc---------cCcc
Confidence 88998877633222 1246678999998765 57788999999999887654332211110 0111
Q ss_pred eeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
.......+.+++.+ +..+.++.+.+|+..++.... ....+........+. +.....++.+.|+....
T Consensus 214 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~--------- 282 (373)
T d2madh_ 214 LLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR-PGGWQQVAYLKSSDGIY--------- 282 (373)
T ss_pred ceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec-cCcceeeEEecCCCeEE---------
Confidence 12445566666654 455678899999988776433 233444455555555 44444444444443221
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
.+..++..++....++.+.+||+.+. +.+
T Consensus 283 -----------------~~~~~~~~~~~~~~~~~v~~~d~~t~----------------------------------~~~ 311 (373)
T d2madh_ 283 -----------------LLTSEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTS 311 (373)
T ss_pred -----------------EecCCCceEEeecCCCeEEEEECCCC----------------------------------cEE
Confidence 23345666777788889999998873 223
Q ss_pred eeeecccceeeeeEEEEeeeecCCCC--EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQK--YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+... .....++|+|||+ ++++++.|+.|++||+.+++.+.++..+....+.|++.++
T Consensus 312 ~~~~~~-------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 312 SQISLG-------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEecCC-------CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 333221 1234568999998 4567889999999999999999999988887788877553
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.72 E-value=7.1e-16 Score=128.84 Aligned_cols=270 Identities=13% Similarity=0.088 Sum_probs=172.9
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeecc---------------------------cccceEEEEEeCCCCcEEEEEe-cC
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETK---------------------------ALRWTITDTSLSPDQRFLVYAS-IC 106 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~s~~~~~l~~~~-~d 106 (409)
+++++.+|.|.||++.++..+..+.... .|.-......++|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 5677889999999999886665532211 1222355556789999997664 67
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE--EEEEecC-----------------eEE
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL--VAAGSDN-----------------FIY 167 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~~d~-----------------~i~ 167 (409)
+.|.++|+.+.+......... ...+..++|+|+++.+ +..+.+. .+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~--------------g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~ 159 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPN--------------VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT 159 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTT--------------CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCC--------------CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence 899999999987655433221 1258899999999854 3333221 235
Q ss_pred EEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC----------------------------------------
Q 015301 168 VYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS---------------------------------------- 207 (409)
Q Consensus 168 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------------------------------- 207 (409)
.+|..+.+....+... ..+..+.++ ++++++++.+.+.
T Consensus 160 ~iD~~t~~v~~qI~v~-~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~ 237 (441)
T d1qnia2 160 AIDAETMDVAWQVIVD-GNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237 (441)
T ss_dssp EEETTTCSEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred eecCccceeeEEEecC-CCccceEEC-CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence 5888888877776543 457889999 8888888776442
Q ss_pred -eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccc
Q 015301 208 -LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEY 285 (409)
Q Consensus 208 -~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (409)
.+.+++. .....+..+.... ....+.++|||+++++ +..+++|.+||+++........
T Consensus 238 ~v~vvd~~----~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~--------------- 297 (441)
T d1qnia2 238 KVPVVDGR----GESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK--------------- 297 (441)
T ss_dssp CCCEEECS----SSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS---------------
T ss_pred CcEEEEcc----cCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc---------------
Confidence 1222221 1222333343333 3577999999998755 5669999999998733211100
Q ss_pred cccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC----------ceEEEe----
Q 015301 286 PSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------AQVAKL---- 351 (409)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----------~~~~~~---- 351 (409)
......+.++.... ......+|+++|..+.+...|..|..|++... ..+..+
T Consensus 298 -----------~~~~~~~~~~~~~g---lgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y 363 (441)
T d1qnia2 298 -----------IELRDTIVAEPELG---LGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY 363 (441)
T ss_dssp -----------SCGGGGEEECCBCC---SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred -----------CCcceEEEeecccc---cCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccccc
Confidence 00011111111000 01122368899999999999999999998521 233343
Q ss_pred -ccCCcceeeeEEecCcCeEEeec
Q 015301 352 -DFHNAPVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 352 -~~~~~~v~~~~~s~~~~~l~s~~ 374 (409)
.+|...+.+.+++|||++|++++
T Consensus 364 ~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 364 QPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp CEEEEEETTTTSTTCCCCEEEEEE
T ss_pred CCCCCccccccccCCCCcEEEecC
Confidence 47888888899999999999993
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=9.5e-15 Score=123.00 Aligned_cols=254 Identities=11% Similarity=0.049 Sum_probs=147.1
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCCcEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQRFL 100 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l 100 (409)
++.++..+ .++|+|||+.|++++ .|+.|.+||..+++.......... .......++|+|||++|
T Consensus 61 ~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l 138 (368)
T d1mdah_ 61 HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEE
Confidence 34444443 589999999998764 367899999998866554432111 11123458999999999
Q ss_pred EEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE
Q 015301 101 VYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 101 ~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 179 (409)
+++. .++.+.+||+.+++........... .+ +......++..+.||.+.++++........
T Consensus 139 ~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~ 200 (368)
T d1mdah_ 139 LFFLFGSSAAAGLSVPGASDDQLTKSASCF--------------HI----HPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp EEEECSSSCEEEEEETTTEEEEEEECSSCC--------------CC----EEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred EEEeCCCCeEEEEECCCCcEeEEeeccCcc--------------eE----ccCCCceEEEEcCCCCEEEEEecCCceeee
Confidence 8876 5789999999988754433221110 00 001222344445566666666544332221
Q ss_pred ------EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCC
Q 015301 180 ------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDG 243 (409)
Q Consensus 180 ------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~ 243 (409)
...+...+....+. +++..+.+. .+.+.+++... ........... .......+++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 275 (368)
T d1mdah_ 201 IVGAQCTGAQNCSSQAAQAN-YPGMLVWAV--ASSILQGDIPA--AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp ECCCCSCTTSCBCSCCEEET-TTTEEEECB--SSCCEEEECCS--SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred eeecccccccccceeecccc-cCcEEEEec--CCCEEEEeecC--CceEEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence 12233444555665 555555443 34455555321 11111111110 11223457788888
Q ss_pred CeEEEEeCC---------CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 244 RYFISNGKD---------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 244 ~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
..++....+ ..|.+||..+. +.+..+... .
T Consensus 276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~----------------------------------~~~~~~~~~-------~ 314 (368)
T d1mdah_ 276 DGIMILTVEHSRSCLAAAENTSSVTASVG----------------------------------QTSGPISNG-------H 314 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSC----------------------------------CEEECCEEE-------E
T ss_pred CEEEEEecCCCceeecCCceEEEEECCCC----------------------------------cEeEEecCC-------C
Confidence 876655322 35888888773 223332211 2
Q ss_pred EEEeeeecCCCC--EEEEEeCCCeEEEEEccCCceEEEeccC
Q 015301 315 CYFSPEYSTAQK--YIYTGSSDNSVYIYDLVSGAQVAKLDFH 354 (409)
Q Consensus 315 ~~~~~~~s~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~ 354 (409)
....++|+|||+ +++++..++.|++||..+++.+.+++..
T Consensus 315 ~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 345678999997 3466677899999999999999998754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.64 E-value=4.3e-14 Score=123.06 Aligned_cols=305 Identities=11% Similarity=0.047 Sum_probs=161.1
Q ss_pred ceeeEEecCceeEeeccce-----------EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 015301 4 GREVNYSGRGRFSAADSCH-----------VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN 72 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----------~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~ 72 (409)
+.++.|||||++++..... .....+..+....+..|.+.+..+.|||||+++|... ++.+++|+..++
T Consensus 64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g 142 (470)
T d2bgra1 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (470)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee-cccceEEECCCC
Confidence 4578899999988764321 1111222333456788999999999999999999865 678999999888
Q ss_pred eeeeeeeeccc---------------ccceEEEEEeCCCCcEEEEEecCCE-EEEEEcC---CCccc--ccccee-----
Q 015301 73 WKIQKDIETKA---------------LRWTITDTSLSPDQRFLVYASICAI-VNIVDVG---SSARE--SLANVT----- 126 (409)
Q Consensus 73 ~~~~~~~~~~~---------------~~~~v~~~~~s~~~~~l~~~~~dg~-i~~w~~~---~~~~~--~~~~~~----- 126 (409)
........... ..+....+.|||||++|++...|.. +..|.+. ..... ......
T Consensus 143 ~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (470)
T d2bgra1 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (470)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeecccccc
Confidence 54433211110 1123456789999999999875432 4433332 11000 000000
Q ss_pred c--eeeee-eeecC------------------CCCcceeeEEEEEcCCCCeEEEEEe-c---C--eEEEEECCCCeeeeE
Q 015301 127 E--IHKGL-DFSAD------------------GDEDEFGIFSVKFSTDGQELVAAGS-D---N--FIYVYDLQANKCSLR 179 (409)
Q Consensus 127 ~--~~~~~-~~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~~~-d---~--~i~v~d~~~~~~~~~ 179 (409)
. ....+ .+... .......+..+.|.+++..++.... . . .+..+|..++.....
T Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~ 302 (470)
T d2bgra1 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (470)
T ss_dssp SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEE
Confidence 0 00000 00000 0012234677889888876655432 1 1 234445555554322
Q ss_pred E-------------cCCCCCeEEEEEeC-CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 180 I-------------PAHKSDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 180 ~-------------~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
. ..+.... ..+.+ .++.+++....||...+|... ..+.....+..+...|..+ ++++++.
T Consensus 303 ~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~s~~dg~~~ly~~~---~~g~~~~~lt~g~~~v~~~-~~~d~~~ 376 (470)
T d2bgra1 303 VARQHIEMSTTGWVGRFRPSE--PHFTLDGNSFYKIISNEEGYRHICYFQ---IDKKDCTFITKGTWEVIGI-EALTSDY 376 (470)
T ss_dssp GGGCEEEECSSSCSSSSSCCC--CEECTTSSEEEEEEECTTSCEEEEEEE---TTCSCCEESCCSSSCEEEE-EEECSSE
T ss_pred EEEeeeeeeccceeecccCCC--ceeeecCCCcEEEEeccCcCceeEEEe---ccCCceeeeccCCeeEEEE-EEECCCE
Confidence 1 1122222 23332 334456667788877776543 1333344444445556665 3334444
Q ss_pred E-EEEeCCC----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee----eecccceeeeeEEE
Q 015301 246 F-ISNGKDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT----YKGHSVLRTLIRCY 316 (409)
Q Consensus 246 l-~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 316 (409)
+ +++..++ .-.||.+.-.. ...... +..|. ...
T Consensus 377 iyf~a~~~~~~p~~~~ly~v~~~g--------------------------------~~~~~~lt~~~~~~~------~~~ 418 (470)
T d2bgra1 377 LYYISNEYKGMPGGRNLYKIQLSD--------------------------------YTKVTCLSCELNPER------CQY 418 (470)
T ss_dssp EEEEESCGGGCTTCBEEEEEETTC--------------------------------TTCEEESSTTTSTTT------BCB
T ss_pred EEEEEecCCCCcceEEEEEEECCC--------------------------------CCceeEecccccCCC------CCE
Confidence 3 3433322 22344332100 011111 11222 234
Q ss_pred EeeeecCCCCEEEEE---eCCCeEEEEEccCCceEEEecc
Q 015301 317 FSPEYSTAQKYIYTG---SSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
.+++|||||++++.. ...-.+.+|+..+++.+..+..
T Consensus 419 ~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 419 YSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp EEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 567899999998743 3345689999999999988864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.50 E-value=6.6e-11 Score=96.11 Aligned_cols=251 Identities=8% Similarity=0.078 Sum_probs=156.2
Q ss_pred EEEEEeCCCCcEEEEEec-------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 88 ITDTSLSPDQRFLVYASI-------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
...++|.|+|+++++... +|.|..||..++........... ........++|.++++.++++
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~-----------~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-----------GYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-----------TEECCEEEEEECSSSSEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc-----------cCCCcceeEEEeCCCCEEEEE
Confidence 456789999998776432 46788888877654322211100 001136789999999988888
Q ss_pred EecCeEEEEECCCCeeeeEEcCCC----CCeEEEEEeCCCCcEEEEeeC---------------CCeEEEecccccccCC
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHK----SDVNTVCFADETGHLIFSGSD---------------DSLCKVWDRRCFISKG 221 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~ 221 (409)
.....|..++.............. ...+.+++. +++++.++-.. +|.|..++. .+
T Consensus 89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----dg 162 (314)
T d1pjxa_ 89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----DG 162 (314)
T ss_dssp ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----TS
T ss_pred ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEee-----cC
Confidence 777788899976554322111111 135788998 78888776422 234444442 22
Q ss_pred ceeeeeeccccceeEEEEcCCCC-----eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 222 RANGVLMGHLEGITFIDSRRDGR-----YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
+... +.......+.++|+|+++ ++++-+..+.|..||+........
T Consensus 163 ~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---------------------------- 213 (314)
T d1pjxa_ 163 QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---------------------------- 213 (314)
T ss_dssp CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----------------------------
T ss_pred ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce----------------------------
Confidence 2222 223334456889988764 444556678888888754211000
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeecC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSSW 375 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~ 375 (409)
.+....+.+... ...-.++++.+|++.++....+.|.+||.+.++.+..+..+....++++|.||++ ++++.+.
T Consensus 214 ~~~~~~~~~~~~-----~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~ 288 (314)
T d1pjxa_ 214 KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEcccccc-----ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence 000111111100 1112456788899888888889999999988887777776667889999999987 5566777
Q ss_pred CCeEEEEecCCCcc
Q 015301 376 DCNIVRWEIPGIGE 389 (409)
Q Consensus 376 dg~i~iw~~~~~~~ 389 (409)
+|.|...++.....
T Consensus 289 ~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 289 NNAVWKFEWQRNGK 302 (314)
T ss_dssp TTEEEEEECSSCBC
T ss_pred CCcEEEEECCCCCh
Confidence 89999888866543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=8.5e-11 Score=93.71 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=138.9
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC---EEEEEEcCCCccccccceeceeeeeeeecCCC
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVNIVDVGSSARESLANVTEIHKGLDFSADGD 139 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (409)
.|.|-|.+.. ....+..... .+.+.+|||||+.||...... .+.+.+...+........
T Consensus 20 ~l~i~d~dG~-~~~~l~~~~~---~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 81 (269)
T d2hqsa1 20 ELRVSDYDGY-NQFVVHRSPQ---PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-------------- 81 (269)
T ss_dssp EEEEEETTSC-SCEEEEEESS---CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC--------------
T ss_pred EEEEEcCCCC-CcEEEecCCC---ceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee--------------
Confidence 4777777654 3333333333 578899999999999875433 466666665544322221
Q ss_pred CcceeeEEEEEcCCCCeEEEEEe-cC--eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc
Q 015301 140 EDEFGIFSVKFSTDGQELVAAGS-DN--FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 140 ~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 216 (409)
........|+|+|+.++.... ++ .+..+........ .............+++.....+++...+|...+|...
T Consensus 82 --~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~- 157 (269)
T d2hqsa1 82 --PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN- 157 (269)
T ss_dssp --SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE-
T ss_pred --ecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeee-
Confidence 224677899999999887654 22 2333333333322 2233444455566663444455555566655555432
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCCcccccccccccccccccccccccccceecccc
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (409)
........+..+........|+|+++.++..+.++ ...+|......
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~------------------------------- 204 (269)
T d2hqsa1 158 --INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT------------------------------- 204 (269)
T ss_dssp --TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-------------------------------
T ss_pred --cccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc-------------------------------
Confidence 12233333444556677788999999888766543 44444333211
Q ss_pred CccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC---CCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
......... .....+.|||||+.|+..+. ...++++++..+.. ..+....+.+...+|||
T Consensus 205 --~~~~~~~~~-------~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 205 --GGVQVLSST-------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp --CCEEECCCS-------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred --ccceEeecC-------ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 111111111 11245679999999886554 35789999976654 55666677888999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.46 E-value=6.1e-12 Score=104.94 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=128.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcE--EEEEecCC-------
Q 015301 38 GMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRF--LVYASICA------- 107 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg------- 107 (409)
.|.-......++|||++|++.. .++.|.++|+++.+........ ....+..++|+|+++. ++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence 4556677777889999996654 6789999999998655433211 2236899999999984 44333322
Q ss_pred ----------EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--------------
Q 015301 108 ----------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------------- 163 (409)
Q Consensus 108 ----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 163 (409)
.+..+|..+.+........ ..+..++++|+|+++++++.+
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~----------------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~ 210 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVD----------------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND 210 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEES----------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS
T ss_pred cccccccccceEEeecCccceeeEEEecC----------------CCccceEECCCCCEEEEEecCCCceEEEeccCcce
Confidence 1233555444332211111 135678888888888777643
Q ss_pred ---------------------------CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEeccc
Q 015301 164 ---------------------------NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRR 215 (409)
Q Consensus 164 ---------------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~ 215 (409)
+.+.+++....+.+..++.... ...+.++ |+++++ +++..+++|.+||+.
T Consensus 211 ~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vS-PDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 211 RDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTS-PDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp BCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEEC-TTSCEEEEECTTSSBEEEEEGG
T ss_pred EEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceEC-CCCCEEEEeCCcCCcEEEEEee
Confidence 3344444455555666665544 5788999 788866 556789999999976
Q ss_pred cccc----CCceeeeeeccc---cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 216 CFIS----KGRANGVLMGHL---EGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 216 ~~~~----~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.... .......+.++. -.....+|.++|..+.+..-|..|..|++..
T Consensus 289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~ 342 (441)
T d1qnia2 289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342 (441)
T ss_dssp GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred hhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccch
Confidence 3211 001111111111 1234468999998888888999999999853
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.45 E-value=2e-10 Score=93.04 Aligned_cols=200 Identities=13% Similarity=0.060 Sum_probs=135.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.+..++++|||+++++...+++|..|+.+... ..... ....+.+++|+++|+++++...++.+..|+........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~---~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEc---CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence 57789999999999999889989888866442 22222 23479999999999999988888888888765543211
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc----------CCCCCeEEEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----------AHKSDVNTVC 191 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~v~~~~ 191 (409)
...... ........+++.++++++++.+.++.+..++...+....... ........+.
T Consensus 104 ~~~~~~------------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~ 171 (302)
T d2p4oa1 104 ETLLTL------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK 171 (302)
T ss_dssp EEEEEC------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred eecccc------------CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence 111000 112247889999999988887778899999988765432221 1123456677
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+. .+.++++.+..+.|..++.... .................+++.++|+++++...++.|..++...
T Consensus 172 ~~--~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 172 RF--GNFLYVSNTEKMLLLRIPVDST--DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp EE--TTEEEEEETTTTEEEEEEBCTT--SCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred cc--CCceeeecCCCCeEEecccccc--ccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 65 3556777778888888886421 1111111222334567899999999888888888899887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.43 E-value=4.6e-11 Score=96.85 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=153.5
Q ss_pred ceeeEEecCceeEeecc-ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 4 GREVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.+.++++|||+++++.. ...++++-|......+....+.+.+++|+|||+++++...++.+..|+..............
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL 109 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc
Confidence 35689999998776644 45677777777666777888999999999999999988888888888865542222222222
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
........+++.++++++++.+.++.+..++...+............. ............+.+.. +..+++.+.
T Consensus 110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ngi~~~~-~~l~~~~~~ 183 (302)
T d2p4oa1 110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR-----SNSESVFPAANGLKRFG-NFLYVSNTE 183 (302)
T ss_dssp TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC-----SSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce-----eeccCcccccccccccC-CceeeecCC
Confidence 233468899999999999988888999888887764322111100000 00001112355666653 334455556
Q ss_pred cCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEE
Q 015301 163 DNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFID 238 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~ 238 (409)
.+.|..++......... ..........+++. ++++++++...++.|..++. .++. +..........++++
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p-----~G~~~~~~~~~~~~~~pt~va 257 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAP-----DRSTTIIAQAEQGVIGSTAVA 257 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECT-----TCCEEEEECGGGTCTTEEEEE
T ss_pred CCeEEeccccccccccccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECC-----CCCEEEEEecCCCCCCceEEE
Confidence 78888888765432221 11123445779999 88998888888999999984 2332 222223345578999
Q ss_pred E---cCCCCeEEEEeCC
Q 015301 239 S---RRDGRYFISNGKD 252 (409)
Q Consensus 239 ~---~~~~~~l~~~~~d 252 (409)
| .+|++.|+.++..
T Consensus 258 fg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 258 FGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EcCCCCCCCEEEEECCC
Confidence 9 6678877765544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.40 E-value=7.5e-10 Score=92.02 Aligned_cols=262 Identities=8% Similarity=0.011 Sum_probs=140.6
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---c
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---D 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d 163 (409)
.+..|+|+|+++.|.++.. +.+..|.+............. . ......+.++++++.+.+... .
T Consensus 41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-~------------~~~p~~v~~~~~~~~~~v~~a~~~~ 106 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-I------------GGHPRANDADTNTRAIFLLAAKQPP 106 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-C------------CSSGGGGCTTSCCEEEEEEECSSTT
T ss_pred CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-C------------CCCcEEEEECCCCCEEEEEEecCCC
Confidence 4667999999999988764 567777775432111110000 0 012345666777764333221 2
Q ss_pred CeEEEEECCC-------------Cee---eeE-EcCCCCCeEEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCcee-
Q 015301 164 NFIYVYDLQA-------------NKC---SLR-IPAHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRAN- 224 (409)
Q Consensus 164 ~~i~v~d~~~-------------~~~---~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~- 224 (409)
+.|..+.+.. ++. ... -......+.++.|+ |+++++++++. ...|.+|+.. ..+...
T Consensus 107 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s-PdG~~l~v~d~g~d~v~~~~~~---~~g~~~~ 182 (365)
T d1jofa_ 107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKL---ASGEVEL 182 (365)
T ss_dssp CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEC---TTSCEEE
T ss_pred CEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC-CCCCEEEEeeCCCCEEEEEEcc---CCCceee
Confidence 4444433211 111 111 11223457899999 88887777653 4578888753 122211
Q ss_pred -eee--eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce
Q 015301 225 -GVL--MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL 300 (409)
Q Consensus 225 -~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (409)
... .........+.|+|+++++.+.. .+++|.+|++................. ......
T Consensus 183 ~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 245 (365)
T d1jofa_ 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-----------------PPGIPD 245 (365)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-----------------CTTCCC
T ss_pred ccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc-----------------cccccc
Confidence 111 12345678899999999886665 478999999876332111100000000 000000
Q ss_pred eeeecccceeeeeEEEEeeeecCCCCEEEEEeC------CCeEEEEEccCCceEEEe------ccCCcceeeeEEec-Cc
Q 015301 301 ATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------DNSVYIYDLVSGAQVAKL------DFHNAPVRDCCWHP-IY 367 (409)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~------~~~~~~v~~~~~s~-~~ 367 (409)
.. ............+.++|||++|+++.. .+.|..|++.....+... ........+++++| +|
T Consensus 246 ~~----~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 246 RD----PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp BC----TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cc----cccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence 00 000001112234568999999988743 234777777553222211 12334567899998 78
Q ss_pred CeEEee-cCCCeEEEEecCCC
Q 015301 368 PMLISS-SWDCNIVRWEIPGI 387 (409)
Q Consensus 368 ~~l~s~-~~dg~i~iw~~~~~ 387 (409)
++|+.+ ..++.|.+|+++..
T Consensus 322 ~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEeCCCCeEEEEEEeCC
Confidence 866655 57799999998654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=2.9e-10 Score=89.80 Aligned_cols=198 Identities=8% Similarity=0.009 Sum_probs=125.5
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
..-..++++++|++.++. +..+.+..++......... ...+ ......++++++++.+++....+.+++++-.+...
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~--~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC--CCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe--ccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence 445899999999976654 4557777776654432222 1221 12467789999998877766666666655433322
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
.... . ....+..+++.++++++++-.....+..++...................+++. +++++
T Consensus 91 ~~~~--~--------------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~~ 153 (260)
T d1rwia_ 91 VLPF--D--------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV 153 (260)
T ss_dssp ECCC--C--------------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-TTCCE
T ss_pred eeee--e--------------eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec-CCCCE
Confidence 1111 0 01147889999999877766566778787765544322222233456789998 78888
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+++...++.|..+|.. .................+++.++|+++++....+.|..++...
T Consensus 154 ~v~~~~~~~i~~~d~~----~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 154 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred eeeccccccccccccc----cceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence 8888888999999953 2222222223445568899999999888877788888887654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=4.9e-10 Score=88.49 Aligned_cols=236 Identities=9% Similarity=0.011 Sum_probs=149.4
Q ss_pred cceeeEEecCcee-Eeecc-ceEEEEeeecCCCceeecC--CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 3 VGREVNYSGRGRF-SAADS-CHVLSRYLPVNGPWKVDGM--NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 3 ~~~~~~~s~dg~~-~~~~~-~~~~~~~~~~~~~~~l~~h--~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
.++.+++++||.. ++... ...+..+.+.......... ......++++++|+++++....+.+++++-.+......
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~- 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP- 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee-
Confidence 4688999999984 44332 2344444444433322221 23467899999999888777777676665544422221
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
... ...+.++++.++++++++-..+..+..++........... .. ......+++.++++.++
T Consensus 94 --~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~p~~i~~~~~g~~~v 155 (260)
T d1rwia_ 94 --FDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TG--------------LNDPDGVAVDNSGNVYV 155 (260)
T ss_dssp --CCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CS--------------CCSCCEEEECTTCCEEE
T ss_pred --eee-eeecccccccccceeEeeccccccccccccccceeeeeee-cc--------------cCCcceeeecCCCCEee
Confidence 111 2357899999999988877677777777765543221111 00 11356789999999887
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
+...++.|..++...................+++. ++++++++....+.|..++.. ...........-.....|+
T Consensus 156 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~----~~~~~~~~~~~~~~P~~i~ 230 (260)
T d1rwia_ 156 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAG----STTSTVLPFTGLNTPLAVA 230 (260)
T ss_dssp EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCCEEEEETTTTEEEEECTT----CSCCEECCCCSCCCEEEEE
T ss_pred eccccccccccccccceeeeeeccccCCCccceee-eeeeeeeeecCCCEEEEEeCC----CCeEEEEccCCCCCeEEEE
Confidence 77778899999987554333323455667899998 788888888888888888742 2111111122234568899
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
++++|.++++-..+++|+.++...
T Consensus 231 ~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 231 VDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp ECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EeCCCCEEEEECCCCEEEEEeCCC
Confidence 999998887767777777666543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=4.7e-09 Score=83.70 Aligned_cols=243 Identities=12% Similarity=0.142 Sum_probs=157.5
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEE-EecC
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAA-GSDN 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~~d~ 164 (409)
....++++++++.+++-..+..|++||.+.. ......... ...........+++.++. ..+++. +.++
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECG---------KRDSQLLYPNRVAVVRNSGDIIVTERSPTH 93 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBS---------SSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecccC---------CCcccccccccccccccccccceeccCCcc
Confidence 4688999999998877777889999987532 211110000 001111234556655543 344433 2356
Q ss_pred eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee--eccccceeEEEEcC
Q 015301 165 FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGITFIDSRR 241 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 241 (409)
.|..++. .++....+. ........+++. +++.++++....+.+.+++. .+..+..+ ..+......+++.+
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~i~~d~ 166 (279)
T d1q7fa_ 94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVVND 166 (279)
T ss_dssp EEEEECT-TSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEECS
T ss_pred ccccccc-cccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEecc-----CCceeecccccccccccceeeecc
Confidence 7777775 456555553 345667889998 78888888888888888884 44444443 33456678899999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
+++.+++....+.|.+||... ..+..+...... .....+++
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~G-----------------------------------~~~~~~g~~g~~----~~P~giav 207 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGIT----NYPIGVGI 207 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTS----CSEEEEEE
T ss_pred ceeEEeeeccccceeeeecCC-----------------------------------ceeeeecccccc----cCCccccc
Confidence 999888888889999998654 112222111101 11234578
Q ss_pred cCCCCEEEEEeC-CCeEEEEEccCCceEEEeccC--CcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 322 STAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 322 s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+++|+++++-.. ++.|.+|+ .+++.+.++... ......+++.|+|.+++ ++.++.|++|+....
T Consensus 208 D~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 208 NSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp CTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 889997777544 45799998 468887776433 33578899999997655 457899999998765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.34 E-value=6.8e-10 Score=92.27 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=121.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE--EEe-cCCEEEEEEcC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV--YAS-ICAIVNIVDVG 115 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~-~dg~i~~w~~~ 115 (409)
....+.-|+|+|++++|.++.. +.+..|.+.....+....... .......+.++++++.+. ++. ..+.+..+.+.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 3455677999999999988765 568888776543333222111 112345678889988543 332 24566655543
Q ss_pred CCcc-ccccceec--eeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCC-eee--eEE--cCCCCC
Q 015301 116 SSAR-ESLANVTE--IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQAN-KCS--LRI--PAHKSD 186 (409)
Q Consensus 116 ~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~~~--~~~--~~~~~~ 186 (409)
.... ........ .......... ......+.++.|+|+|++++++.. ...|.+|+.... ... ... ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g 194 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred CCCCcceeEeeeecceecCcccCcc-cCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence 2211 00000000 0000000000 011223789999999999888865 357888876533 222 111 223567
Q ss_pred eEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeee-----------------ccccceeEEEEcCCCCeEEE
Q 015301 187 VNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLM-----------------GHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~ 248 (409)
...++|+ ++++++++. ..+++|.+|++.. .......... .+......+.++|+|++|++
T Consensus 195 Pr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 195 PRWVAMH-PTGNYLYALMEAGNRICEYVIDP--ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp EEEEEEC-TTSSEEEEEETTTTEEEEEEECT--TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred eEEEEEC-CCCceEEEeccCCCEEEEEEecC--CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 8999999 778777554 4678999999752 1111111110 11223567889999999887
Q ss_pred EeC-C-----CcEEEeeCCC
Q 015301 249 NGK-D-----QTTKLWDIRK 262 (409)
Q Consensus 249 ~~~-d-----g~i~iwd~~~ 262 (409)
+.. + +.|..|++..
T Consensus 272 snr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT
T ss_pred EcccCCCccceEEEEEEecC
Confidence 743 2 2366666554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.28 E-value=1.3e-08 Score=81.01 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=153.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec---ccccceEEEEEeCCC-CcEEEEE-ecCCEEEEEEcCC
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET---KALRWTITDTSLSPD-QRFLVYA-SICAIVNIVDVGS 116 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~-~~dg~i~~w~~~~ 116 (409)
....++++++|+++++-..+..|++||.+.. .+...... .........+++.++ +..+++. +.++.|..++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 4689999999998888777889999997643 33222111 111223455665554 3444433 3455777776543
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~ 194 (409)
.... .... ........+++.+++..+++....+.+.+++. +++.+..+ ..+......+++.
T Consensus 103 ~~~~-~~~~--------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d- 165 (279)
T d1q7fa_ 103 QFVR-KFGA--------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN- 165 (279)
T ss_dssp CEEE-EECT--------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC-
T ss_pred ccee-ecCC--------------CcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeec-
Confidence 2211 1100 11224678899999988887777788888885 45556554 3456678889998
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCcccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 271 (409)
++++++++....+.|++||. .++.+..+. +.......+++.++|+++++-.. ++.|.+|+...
T Consensus 166 ~~g~i~v~d~~~~~V~~~d~-----~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G--------- 231 (279)
T d1q7fa_ 166 DKQEIFISDNRAHCVKVFNY-----EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--------- 231 (279)
T ss_dssp SSSEEEEEEGGGTEEEEEET-----TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------
T ss_pred cceeEEeeeccccceeeeec-----CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC---------
Confidence 78888888888999999995 344444442 34455788999999997776544 45688888432
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
..+..+....... ..+.+++.|+|.+++ ++.+++|++|......+
T Consensus 232 --------------------------~~~~~~~~~~~~~----~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 232 --------------------------QLISALESKVKHA----QCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp --------------------------CEEEEEEESSCCS----CEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred --------------------------CEEEEEeCCCCCC----CEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 2222322211111 124557888887655 55789999999876543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=5.6e-09 Score=82.88 Aligned_cols=209 Identities=18% Similarity=0.186 Sum_probs=126.3
Q ss_pred eeeEEecCceeEeec-----cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeC-CCcEE--EEEcCCCeeee
Q 015301 5 REVNYSGRGRFSAAD-----SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIK--VYNVDKNWKIQ 76 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~-----~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~--vw~~~~~~~~~ 76 (409)
+..+|||||+.++.. ................+..+.+.+....|+|+|+.++.... ++... .+..... ...
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-~~~ 120 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIR 120 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEE
T ss_pred eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccc-cce
Confidence 467899999987742 22233333334444577788899999999999999887653 23322 3333222 111
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEE-ecCC--EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYA-SICA--IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
.... .........+++++..++.. ..++ .|.+.++.......... .........|+|+
T Consensus 121 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~spd 181 (269)
T d2hqsa1 121 QVTD---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW----------------EGSQNQDADVSSD 181 (269)
T ss_dssp ECCC---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC----------------SSSEEEEEEECTT
T ss_pred eeee---ccccccccccccccccceecccccCCceEeeeecccccceeeec----------------ccccccccccccc
Confidence 1111 22234555677777655544 3444 45555655544322221 1124677889999
Q ss_pred CCeEEEEEecC---eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC---CCeEEEecccccccCCceeeee
Q 015301 154 GQELVAAGSDN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD---DSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 154 ~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
++.++..+.++ .+.+.+...+.. .+..+........|+ |+|+.|+..+. ...+.++++. +.....+
T Consensus 182 g~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~S-PDG~~i~f~s~~~~~~~l~~~~~d-----g~~~~~l 253 (269)
T d2hqsa1 182 GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTD-----GRFKARL 253 (269)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETT-----SCCEEEC
T ss_pred cceeEEEeecCCceeeeEeecccccc--eEeecCccccceEEC-CCCCEEEEEEcCCCCcEEEEEECC-----CCCEEEE
Confidence 99988877654 455556555443 333455667888999 88888765443 2357788863 3444555
Q ss_pred eccccceeEEEEcC
Q 015301 228 MGHLEGITFIDSRR 241 (409)
Q Consensus 228 ~~~~~~v~~~~~~~ 241 (409)
....+.+...+|+|
T Consensus 254 t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 254 PATDGQVKFPAWSP 267 (269)
T ss_dssp CCSSSEEEEEEECC
T ss_pred eCCCCcEEeEEeCC
Confidence 55667788889998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.27 E-value=2.9e-08 Score=80.23 Aligned_cols=248 Identities=14% Similarity=0.123 Sum_probs=148.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCeeeeeee-ecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQ-------ESNIKVYNVDKNWKIQKDI-ETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.-...-.++|.|+|+++++... ++.|..||.+++....... ......+....++|.++++.|+++...+.+.
T Consensus 16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence 3344678899999998776432 4678888888764322211 1111223467899999999888888777888
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---------------cCeEEEEECCCCe
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---------------DNFIYVYDLQANK 175 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~v~d~~~~~ 175 (409)
.++.+.............. .-...+.+++.++|++.++-.. .|.|..++.. ++
T Consensus 96 ~~~~~g~~~~~~~~~~~g~-----------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~ 163 (314)
T d1pjxa_ 96 VVQTDGTFEEIAKKDSEGR-----------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp EEETTSCEEECCSBCTTSC-----------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred EEeCCCcEEEEEecccccc-----------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc
Confidence 8888765433221111100 0113678899999987665321 2345555543 33
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCc-----EEEEeeCCCeEEEecccccccCCcee-----eeeec-cccceeEEEEcCCCC
Q 015301 176 CSLRIPAHKSDVNTVCFADETGH-----LIFSGSDDSLCKVWDRRCFISKGRAN-----GVLMG-HLEGITFIDSRRDGR 244 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-~~~~v~~~~~~~~~~ 244 (409)
..... ..-...+.++|+ ++++ ++++-+..+.|..||+.. .+... ..+.. +......+++..+|+
T Consensus 164 ~~~~~-~~~~~pNGi~~~-~d~d~~~~~lyv~d~~~~~i~~~d~~~---~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 164 MIQVD-TAFQFPNGIAVR-HMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EEEEE-EEESSEEEEEEE-ECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred eeEee-CCcceeeeeEEC-CCCCcceeEEEEEeecccceEEeeccC---ccccceeeEEEEccccccccceeeEEecCCc
Confidence 33222 233345789998 4443 555566788899998652 22211 11111 122456799999999
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
+.++....+.|.+||.+... .+..+.... ....+++|.|+
T Consensus 239 lyVa~~~~g~I~~~dp~~g~----------------------------------~~~~i~~p~------~~~t~~afg~d 278 (314)
T d1pjxa_ 239 LLVANWGSSHIEVFGPDGGQ----------------------------------PKMRIRCPF------EKPSNLHFKPQ 278 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS----------------------------------CSEEEECSS------SCEEEEEECTT
T ss_pred EEEEEcCCCEEEEEeCCCCE----------------------------------EEEEEECCC------CCEEEEEEeCC
Confidence 88888788899999976521 122222111 11234578888
Q ss_pred CC-EEEEEeCCCeEEEEEcc
Q 015301 325 QK-YIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 325 ~~-~l~~~~~dg~v~i~d~~ 343 (409)
++ ++++.+.+|.|..+++.
T Consensus 279 ~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 279 TKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEECCCCcEEEEECC
Confidence 87 45566677888888864
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.26 E-value=4.2e-08 Score=79.62 Aligned_cols=245 Identities=9% Similarity=0.022 Sum_probs=148.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe----
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 162 (409)
....++|.++|++.++-...+.|..|+..+......... .......++++++|+++++...
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~---------------~~~~p~gla~~~dG~l~va~~~~~~~ 105 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---------------HKANPAAIKIHKDGRLFVCYLGDFKS 105 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---------------SSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC---------------CCCCeeEEEECCCCCEEEEecCCCcc
Confidence 356889999999777777888898888876543221110 0114778999999987766532
Q ss_pred cCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeC------CCeEEEecccccccCCceeeeeeccccce
Q 015301 163 DNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
.+.+...+............ -...+..+++. +++++.++... .+.+..++. .+..+..+...-...
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~-----dg~~~~~~~~~~~~p 179 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSP-----DFRTVTPIIQNISVA 179 (319)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECT-----TSCCEEEEEEEESSE
T ss_pred ceeEEEEcCCCceeeeeccCCCcccCCcceeEE-eccceeecccccccccCcceeEEEec-----ccceeEEEeecccee
Confidence 23466666655554433321 23457789998 78887766432 223444442 233333333334456
Q ss_pred eEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 235 TFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 235 ~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.++|+|+++.|+. -+..+.|..|++........... ........+.
T Consensus 180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-------------------------~~~~~~~~~~------- 227 (319)
T d2dg1a1 180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-------------------------ATIPYYFTGH------- 227 (319)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-------------------------EEEEEECCSS-------
T ss_pred eeeeeccccceEEEecccCCceEEEEEcCCCceecccc-------------------------ceeeeccCCc-------
Confidence 78999999986644 45678999998765211100000 0000000000
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc------CCcceeeeEEecCcCeEEeecC------CCeEEE
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------HNAPVRDCCWHPIYPMLISSSW------DCNIVR 381 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~------dg~i~i 381 (409)
...-.++++++|++.++....+.|.+||- +++.+.++.. +...+++++|.+++..+++... .|.|+.
T Consensus 228 ~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~ 306 (319)
T d2dg1a1 228 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYT 306 (319)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEE
T ss_pred cceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEE
Confidence 01124567889998888888999999995 7888887753 3346789999998775555432 244555
Q ss_pred EecC
Q 015301 382 WEIP 385 (409)
Q Consensus 382 w~~~ 385 (409)
.+..
T Consensus 307 ~~~~ 310 (319)
T d2dg1a1 307 VNGF 310 (319)
T ss_dssp EECS
T ss_pred EeCC
Confidence 5543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.23 E-value=4.5e-08 Score=79.40 Aligned_cols=204 Identities=11% Similarity=0.047 Sum_probs=124.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----CCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~~w~~~ 115 (409)
...+..++|.++|++.++-..++.|..|+.+++.......... .....++++++|+++++... .+.+...+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC---CCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 3445689999999987777788899999987764443333222 25789999999988776543 2334444444
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCCeEE
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSDVNT 189 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~ 189 (409)
........... .....+..+++.++|++.++... .+.+..++..... +..+...-...+.
T Consensus 116 ~~~~~~~~~~~-------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnG 181 (319)
T d2dg1a1 116 GDNLQDIIEDL-------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANG 181 (319)
T ss_dssp SCSCEEEECSS-------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEE
T ss_pred CceeeeeccCC-------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeee
Confidence 43322111100 11124778999999986554322 2345556654333 3333223345688
Q ss_pred EEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeee----eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 190 VCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGV----LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 190 ~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
++|+ ++++.| ++-+..+.|..||+............ ..........+++.++|++.++....+.|.++|-.
T Consensus 182 ia~s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 182 IALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeec-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 9999 677654 55567889999987521111111111 11112235679999999988888889999999953
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.5e-08 Score=85.29 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=123.8
Q ss_pred eEEecCceeEeeccc-eEEEEeeecCCCce-eecC---CCCeEEEEECCCCCEEEEEe---------CCCcEEEEEcCCC
Q 015301 7 VNYSGRGRFSAADSC-HVLSRYLPVNGPWK-VDGM---NSRVYTSQFSNDGSFFVAAS---------QESNIKVYNVDKN 72 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~-~~~~~~~~~~~~~~-l~~h---~~~v~~~~~s~~~~~l~t~~---------~d~~i~vw~~~~~ 72 (409)
..|++|+.|+..... .+............ +..+ .-.+....||||+++++... ..+.+.++|+.++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 457788877654332 22222222233233 2222 23577888999999988764 3467899999887
Q ss_pred eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC-----CcceeeEE
Q 015301 73 WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD-----EDEFGIFS 147 (409)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~ 147 (409)
.. ..+.........+....|||||+.||... ++.|.+.+..++.......-.. ....+..... +....-.+
T Consensus 102 ~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~--~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGK--EGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCB--TTTEEEEECCHHHHHTTSSSSEE
T ss_pred ce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccC--cceeeccccchhhhhhhccccce
Confidence 43 22222222233566688999999999876 6778888876655432221110 0000000000 00011246
Q ss_pred EEEcCCCCeEEEEEec-C---------------------------------eEEEEECCCCeeeeEE------cCCCCCe
Q 015301 148 VKFSTDGQELVAAGSD-N---------------------------------FIYVYDLQANKCSLRI------PAHKSDV 187 (409)
Q Consensus 148 ~~~~~~~~~l~~~~~d-~---------------------------------~i~v~d~~~~~~~~~~------~~~~~~v 187 (409)
+.|||||++|+....| . .+.++|+.++...... ......+
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~ 257 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence 7899999999987532 2 2344454433322111 0112236
Q ss_pred EEEEEeCCCCcEEEEeeC-C---CeEEEecccccccCCceeeeeeccc-cc----eeEEEEcCCCCeEE
Q 015301 188 NTVCFADETGHLIFSGSD-D---SLCKVWDRRCFISKGRANGVLMGHL-EG----ITFIDSRRDGRYFI 247 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~-~~----v~~~~~~~~~~~l~ 247 (409)
..+.|. +++++++.... + ..+.++|.. .+........+. .. -....|+++|+.++
T Consensus 258 ~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~----tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 258 TMVKWA-TSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (465)
T ss_dssp EEEEES-SSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred eeeEEc-CCCeEEEEEEccccccceEEEEcCC----CCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence 778898 67766655432 2 246677754 444433333222 11 13456888988543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=8e-09 Score=88.41 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=94.5
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe---------cCCEEEEEEcCCC
Q 015301 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS---------ICAIVNIVDVGSS 117 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~~w~~~~~ 117 (409)
.|.+++.++.. ..+|.|.+||+.++..........-....+....||||+++++... ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 58888876654 4578899999988754322222121223567788999999988764 3578899999887
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc-CCCCC----------
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSD---------- 186 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~---------- 186 (409)
....+...... ...+....|||||+.+|... ++.|.+.+..++..++... +....
T Consensus 102 ~~~~l~~~~~~-------------~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy 167 (465)
T d1xfda1 102 DPQSLDPPEVS-------------NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (465)
T ss_dssp CCEECCCTTCC-------------SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred ceeeccCccCC-------------ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhh
Confidence 75443222111 11356688999999998875 6789999988776655442 11111
Q ss_pred -------eEEEEEeCCCCcEEEEee
Q 015301 187 -------VNTVCFADETGHLIFSGS 204 (409)
Q Consensus 187 -------v~~~~~~~~~~~~l~~~~ 204 (409)
-..+.|+ |+++.|+...
T Consensus 168 eee~~~~~~a~~WS-PDgk~iaf~~ 191 (465)
T d1xfda1 168 EEEILKTHIAHWWS-PDGTRLAYAA 191 (465)
T ss_dssp HHTTSSSSEEEEEC-TTSSEEEEEE
T ss_pred hhhhccccceEEEC-CCCCeEEEEE
Confidence 2467799 8898888764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.06 E-value=5.9e-08 Score=77.31 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=71.9
Q ss_pred EECCC--CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-C-----CEEEEEEcCCCc
Q 015301 47 QFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-C-----AIVNIVDVGSSA 118 (409)
Q Consensus 47 ~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~~w~~~~~~ 118 (409)
..||| |+.+|..+ ++.|.+.|+.+++. .++.. +.+.+...+|||||+.||.... + ..|.+++..+++
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~---~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVS---NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEEC---SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEec---CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 35788 99888765 45788889988743 33322 2336888999999999997642 1 247777887776
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANK 175 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~ 175 (409)
...+........ ..........|+|+|+.|+..... ..+...+...+.
T Consensus 80 ~~~lt~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 80 IKRITYFSGKST---------GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 133 (281)
T ss_dssp EEECCCCCEEEE---------TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred eEEeeecCCCcc---------CccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence 544332221110 111235678899999988875432 234455555444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.92 E-value=5.4e-06 Score=65.93 Aligned_cols=223 Identities=12% Similarity=0.095 Sum_probs=136.2
Q ss_pred EEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE
Q 015301 91 TSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY 169 (409)
Q Consensus 91 ~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 169 (409)
..|++....|... -..+.|..||..+++.... .. ...+.++++.++|.++++ +. ..+.++
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~----------------~~~~~~i~~~~dg~l~va-~~-~gl~~~ 83 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVH-AL----------------PFMGSALAKISDSKQLIA-SD-DGLFLR 83 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC----------------SSCEEEEEEEETTEEEEE-ET-TEEEEE
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-EC----------------CCCcEEEEEecCCCEEEE-Ee-CccEEe
Confidence 4577754444443 4677898999887754321 11 114778889889876654 44 458999
Q ss_pred ECCCCeeeeEEcC----CCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 170 DLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 170 d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
|..+++....... ....++.+.+. +++++.++... .+.-.+|.+. .+...... ......+.++|++
T Consensus 84 d~~tg~~~~l~~~~~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~~----~g~~~~~~-~~~~~~Ng~~~s~ 157 (295)
T d2ghsa1 84 DTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGKVTKLF-ADISIPNSICFSP 157 (295)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTEEEEEE-EEESSEEEEEECT
T ss_pred ecccceeeEEeeeecCCCcccceeeEEC-CCCCEEEEeccccccccceeEeeec----CCcEEEEe-eccCCcceeeecC
Confidence 9998875443321 12347888888 78887766432 2234555542 33333333 3334567899999
Q ss_pred CCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 242 DGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 242 ~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
+++.++.+ +..+.|..|++.......... ........+.. .....++
T Consensus 158 d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~--------------------------~~~~~~~~~~~------g~pdG~~ 205 (295)
T d2ghsa1 158 DGTTGYFVDTKVNRLMRVPLDARTGLPTGK--------------------------AEVFIDSTGIK------GGMDGSV 205 (295)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSC--------------------------CEEEEECTTSS------SEEEEEE
T ss_pred CCceEEEeecccceeeEeeecccccccccc--------------------------eEEEeccCccc------ccccceE
Confidence 99866544 557788888875421110000 00000011111 1123446
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEE
Q 015301 321 YSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLI 371 (409)
Q Consensus 321 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~ 371 (409)
++.+|++.++.-..+.|..|| .+++.+..+......+++++|- +|.+.|+
T Consensus 206 vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 206 CDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp ECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred EcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence 778899888887889999999 4789999988766789999996 6666443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.91 E-value=5.6e-06 Score=65.86 Aligned_cols=219 Identities=13% Similarity=0.036 Sum_probs=138.9
Q ss_pred eeeEEec-CceeEeec-cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee--
Q 015301 5 REVNYSG-RGRFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-- 80 (409)
Q Consensus 5 ~~~~~s~-dg~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-- 80 (409)
+...|.+ ++.+...+ ....+.++-+.......-.....+.++++.++|.++++ +.+ -+.++|.++++.. ....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~-~l~~~~ 97 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLT-LHAELE 97 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEE-EEECSS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceee-EEeeee
Confidence 5566775 45544432 33455555555555554455678999999999877765 445 4889999887432 2221
Q ss_pred cccccceEEEEEeCCCCcEEEEEec----CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASI----CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.......++.+.+.|+|++.++... .+.-.+|.+..++........ ...+.++|+++++.
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----------------~~~Ng~~~s~d~~~ 161 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----------------SIPNSICFSPDGTT 161 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----------------SSEEEEEECTTSCE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----------------CCcceeeecCCCce
Confidence 1122346899999999997776542 223455655555432221110 13577899999987
Q ss_pred EEEEE-ecCeEEEEECCCC------eee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee
Q 015301 157 LVAAG-SDNFIYVYDLQAN------KCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 157 l~~~~-~d~~i~v~d~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
++.+. ..+.|..+++... +.. ............+++. .++++.++.-..+.|..||. .++.+..+
T Consensus 162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp-----~G~~~~~i 235 (295)
T d2ghsa1 162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-----DGNHIARY 235 (295)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-----TCCEEEEE
T ss_pred EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecC-----CCcEeeEe
Confidence 66554 4678888887421 111 1223344567888988 88888888777889999994 56777777
Q ss_pred eccccceeEEEEc-CCCCeEEE
Q 015301 228 MGHLEGITFIDSR-RDGRYFIS 248 (409)
Q Consensus 228 ~~~~~~v~~~~~~-~~~~~l~~ 248 (409)
.-....+++++|- ++.+.|+.
T Consensus 236 ~lP~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 236 EVPGKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp ECSCSBEEEEEEESTTSCEEEE
T ss_pred cCCCCceEEEEEeCCCCCEEEE
Confidence 6666678999995 56555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.80 E-value=7.9e-07 Score=70.52 Aligned_cols=228 Identities=11% Similarity=0.054 Sum_probs=119.1
Q ss_pred EEecC--ceeEeecc-ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeC-C-----CcEEEEEcCCCeeeeee
Q 015301 8 NYSGR--GRFSAADS-CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQ-E-----SNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 8 ~~s~d--g~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-d-----~~i~vw~~~~~~~~~~~ 78 (409)
..||| |..++-.. ..++...........|..+.+.+...+|||||+.||.... + ..|.+++..++......
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence 46899 88766433 3444444556667788889999999999999999986532 2 23777777777443221
Q ss_pred eec---ccccceEEEEEeCCCCcEEEEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 79 IET---KALRWTITDTSLSPDQRFLVYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 79 ~~~---~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
... ...........|+|+++.|+..... ..+...+........... ......
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~- 145 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL------------------GPATHI- 145 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS------------------CSCSEE-
T ss_pred ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC------------------Ccccee-
Confidence 111 1112235678899999999876432 234444444332211100 011222
Q ss_pred EcCCCCeEEE-EEec-----------CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEeccc
Q 015301 150 FSTDGQELVA-AGSD-----------NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRR 215 (409)
Q Consensus 150 ~~~~~~~l~~-~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 215 (409)
+.+++..++. .... .................. +........+. ++ .++.....++ .|.++|+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~d~~ 222 (281)
T d1k32a2 146 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-MSTHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLD 222 (281)
T ss_dssp EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-CSSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETT
T ss_pred eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccC-Cccccceeeee-cc-ccceecccccccceEEEeCC
Confidence 2333333322 2111 112222222222222222 33444555565 33 3344444443 46666653
Q ss_pred ccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 216 CFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+.....+..+. ......|+|||+.|+.. .++.|.++|+.+.+
T Consensus 223 -----g~~~~~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 223 -----GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 264 (281)
T ss_dssp -----SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred -----CCceEEeecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence 22222232222 22334689999988764 46789999988744
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.72 E-value=5.8e-06 Score=66.97 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=135.0
Q ss_pred EEEeCC---CCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEec
Q 015301 90 DTSLSP---DQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSD 163 (409)
Q Consensus 90 ~~~~s~---~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 163 (409)
.+.+.. ||++|++.. .++.|.+.|+++.+........... .+..++..+ +-.|++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~--------------~~HG~r~~~~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--------------GIHGLRPQKWPRSNYVFCNGED 154 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--------------SEEEEEECCSSBCSEEEEEECS
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCC--------------CCceeecccCCCeEEEEccCcc
Confidence 455543 788888776 6789999999998875544433221 345555543 44566655542
Q ss_pred ------------------CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC---------------eEE
Q 015301 164 ------------------NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS---------------LCK 210 (409)
Q Consensus 164 ------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~ 210 (409)
+.+.++|.++++....+.. ......+.++ ++++++++.+.+. .+.
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~ 232 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 232 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccC-CCCCEEEEEeccccCCcchhhcccccceEEE
Confidence 3467889999888776653 3356678888 7888888876431 133
Q ss_pred Eeccccc---------------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccccc
Q 015301 211 VWDRRCF---------------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 211 iwd~~~~---------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 268 (409)
+++.... ...+........-......+.++|||+++++++. +.++.++|+++......
T Consensus 233 V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~ 312 (459)
T d1fwxa2 233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY 312 (459)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred EechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc
Confidence 3332100 0001111111112233567899999999887765 88999999987432211
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC---
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG--- 345 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~--- 345 (409)
... .......+.... . -.....+|+..|....+---|..|.-|++...
T Consensus 313 ~~~--------------------------~~~~~~~~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~~~~~~ 363 (459)
T d1fwxa2 313 ENA--------------------------DPRSAVVAEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRA 363 (459)
T ss_dssp SCC---------------------------GGGGEEECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHH
T ss_pred ccC--------------------------CccccEEeeccc--C-cCccccccCCCceEEEEeeccceEEEEecchhhhh
Confidence 000 000000000000 0 00123367777866666668999999998533
Q ss_pred -------ceEEEeccCCc-----ceeeeEEecCcCeEEeec
Q 015301 346 -------AQVAKLDFHNA-----PVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 346 -------~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~ 374 (409)
..+..+.-|.. ....-...|+|++|++..
T Consensus 364 ~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 364 YAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp HHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 34455543322 122224467888887764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.60 E-value=1.2e-05 Score=66.91 Aligned_cols=159 Identities=11% Similarity=0.089 Sum_probs=93.0
Q ss_pred eEEEEECCCCCEEEEEeCC-----C------cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-CEEE
Q 015301 43 VYTSQFSNDGSFFVAASQE-----S------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVN 110 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d-----~------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~ 110 (409)
+.......+|+.++.|+.+ + .+.+||..++.-.........+.......++.+++++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 3445556788988888743 1 37799998873322111111222123456788999999988655 5899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEEc---
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRIP--- 181 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~--- 181 (409)
+||..+............. .-..++..+||+.++.++.+ ..+.+||..+.+....-.
T Consensus 102 ~yd~~~~~w~~~~~~~~~r--------------~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 167 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVAR--------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 167 (387)
T ss_dssp EEEGGGTEEEECCCCSSCC--------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred EecCccCcccccccccccc--------------cccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcc
Confidence 9999877654333222111 23456777899998888752 368999998876432110
Q ss_pred ------CCCC----CeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 182 ------AHKS----DVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 182 ------~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.. .-....+..++++.++.+..++.+.+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 168 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred cccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 0000 001112222466777777777777777743
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=0.00056 Score=52.31 Aligned_cols=260 Identities=7% Similarity=0.120 Sum_probs=157.9
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
...|.|-|+..+....+... . -.+.-.+|..+.||.-+ ...+.+||+++.+......+.+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi--~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e------------- 103 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 103 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC--C----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CceEEEEECCCCCcceeccc--c----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-------------
Confidence 35788889876643322111 1 12234678888888776 6689999999887655554443
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCC----CCCeEEEEEeCCCCcEEEEee-------CCCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~ 208 (409)
+|.-=.|-.+.. |+..+ +..|+-|+++.. .+.+.+..| ...|..-..+ ++.++++..+ -.|.
T Consensus 104 ---~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~i~G~ 177 (327)
T d1utca2 104 ---DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 177 (327)
T ss_dssp ---CCCEEEESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEE
T ss_pred ---CcEEEEecCCCE-EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEEC-CCCCEEEEEeEecCCCceeEE
Confidence 355566765543 44443 467999999543 455555444 3456666666 7777776543 2367
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCC---CeEEEEe---CCCcEEEeeCCCCcc-cccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNG---KDQTTKLWDIRKMSS-NTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+.+..+. ..++.+. ..+.+.+.++..... ......
T Consensus 178 mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k---------- 242 (327)
T d1utca2 178 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------- 242 (327)
T ss_dssp EEEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC----------
T ss_pred EEEEEe-----ccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc----------
Confidence 888985 556667788887766555543221 2333322 235788888876322 111110
Q ss_pred cccccccceeccccCccceee-eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 282 WMEYPSYARRLKHPHDQSLAT-YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
+.+.. +...... ....++..|+.-..+..-+.-|.|++||++++.++..-+-....|..
T Consensus 243 ----------------k~vdi~fppea~~----DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 243 ----------------KAVDVFFPPEAQN----DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp ----------------EEEECCCCTTCTT----CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ----------------eeEEEECCccccC----CcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence 00000 0110000 12234456777788999999999999999999999888777777775
Q ss_pred eEEecCcCeEEeecCCCeEEE
Q 015301 361 CCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 361 ~~~s~~~~~l~s~~~dg~i~i 381 (409)
.+-+.+..=++....+|.|.-
T Consensus 303 ~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 303 TAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEETTTTEEEEEETTSEEEE
T ss_pred eccCCCCceEEEECCCCeEEE
Confidence 555555455555667887754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.17 E-value=0.0015 Score=56.62 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce-eeeEEecCcC-eEEeecC--------------------CCeEEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV-RDCCWHPIYP-MLISSSW--------------------DCNIVR 381 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~s~~~--------------------dg~i~i 381 (409)
.+.++++|+.||.++.+|.++|+.+-+++...... .-+.+..+|+ ||+..+. .+.|.+
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~ 547 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLV 547 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEE
Confidence 46788899999999999999999998886432211 1245666887 5554322 246888
Q ss_pred EecCCCcccCCC
Q 015301 382 WEIPGIGEAPLP 393 (409)
Q Consensus 382 w~~~~~~~~~~~ 393 (409)
|.|+...+.+.|
T Consensus 548 F~L~g~~~~~~~ 559 (560)
T d1kv9a2 548 FALDGKAQLPPP 559 (560)
T ss_dssp EEETCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 888866655544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=0.0012 Score=50.96 Aligned_cols=253 Identities=8% Similarity=0.015 Sum_probs=138.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceecee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIH 129 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~ 129 (409)
.+|+.+.. +.|+-.+++..... ........+...+.+++|.+..+.|..+. .++.|+..++............
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--- 77 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--- 77 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec---
Confidence 44544433 46777776544211 11111222233578899998877777664 5678888888765433221110
Q ss_pred eeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe
Q 015301 130 KGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208 (409)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 208 (409)
...+..+++..-+..|..+. ..+.|.+.++........+......+..+++.|..+.++.+-...+.
T Consensus 78 ------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~ 145 (263)
T d1npea_ 78 ------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (263)
T ss_dssp ------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred ------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCC
Confidence 11377888877566665554 46799999987654433334344678999999656655555433333
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.+|+... .............-.....+++.+.++.|..+ ...+.|...|+.....
T Consensus 146 ~~I~r~~--~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~---------------------- 201 (263)
T d1npea_ 146 PKIETSH--MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---------------------- 201 (263)
T ss_dssp CEEEEEE--TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----------------------
T ss_pred cEEEEec--CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe----------------------
Confidence 3455432 11222222222233456789998877766554 4567888888765211
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-CCcceeeeEEec
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-HNAPVRDCCWHP 365 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~s~ 365 (409)
...+.+... .+.+++. ++.+..+-...+.|...|..+++.+..+.. ......++...+
T Consensus 202 ------------~~v~~~~~~-------P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 202 ------------RKVLEGLQY-------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp ------------EEEEECCCS-------EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred ------------EEEECCCCC-------cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 111111110 1223332 233444444668899999988887766542 233455665544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.03 E-value=0.0031 Score=54.66 Aligned_cols=55 Identities=9% Similarity=-0.056 Sum_probs=38.9
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.|.-+|+.+++.+-+...- .+..+-..+..+.++++++.||.++.+|.+++++.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence 57888899999888766522 22222222334667888999999999999988764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.95 E-value=0.0029 Score=51.89 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=87.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------CEEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------AIVN 110 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 110 (409)
.|.......++.++|++++.|+.+ ..+.+||..+..-. ......... .-...+..+|++.++.++.+ ..+.
T Consensus 73 ~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~ 150 (387)
T d1k3ia3 73 KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGE 150 (387)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred CcccceeEEEEecCCcEEEeecCCCcceeEecCccCccc-ccccccccc-cccceeeecCCceeeeccccccccccceee
Confidence 344444567889999999998765 58999999876332 222222211 22346677899999988743 3688
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc------CCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP------AHK 184 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~ 184 (409)
+||..+.+-............... .........-..+...++|+.++.+...+.+.+++..+........ .+.
T Consensus 151 ~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (387)
T d1k3ia3 151 VYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229 (387)
T ss_dssp EEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred eecCCCCceeecCCCccccccccc-ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCc
Confidence 999988764332221111000000 0000000001112334567777777777778888877765432210 011
Q ss_pred C--CeEEEEEeCCCCcEEEEeeC
Q 015301 185 S--DVNTVCFADETGHLIFSGSD 205 (409)
Q Consensus 185 ~--~v~~~~~~~~~~~~l~~~~~ 205 (409)
. .-.++.+...++++++.|+.
T Consensus 230 ~~~~~~~~~~~~~~g~v~v~GG~ 252 (387)
T d1k3ia3 230 DAMCGNAVMYDAVKGKILTFGGS 252 (387)
T ss_dssp CCBTCEEEEEETTTTEEEEECCB
T ss_pred ccccccEEEeeccCCceEEEEec
Confidence 1 11233343356777777764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.91 E-value=0.0048 Score=53.43 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=35.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCc-ceeeeEEecCcC-eEEe
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA-PVRDCCWHPIYP-MLIS 372 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~s 372 (409)
.+.++++|+.||.++-+|.++|+.+-+++.... .-.-+.|..||+ |+++
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 467888899999999999999999988863322 112255666887 6654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.0037 Score=50.55 Aligned_cols=192 Identities=14% Similarity=0.045 Sum_probs=111.6
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecC------------------CEE
Q 015301 51 DGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASIC------------------AIV 109 (409)
Q Consensus 51 ~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d------------------g~i 109 (409)
||++|++.. .+..|.+-|+++.+..+.. ... ....+..++..+ +..|++..+.. +.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi-~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEE-ecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 789988776 5788999999988654322 221 122466666644 55677766542 235
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---------------eE--------
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---------------FI-------- 166 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i-------- 166 (409)
.++|..+.+......... ....++++++|+++++.+.+. .+
T Consensus 176 t~ID~~tm~V~~QV~V~g----------------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri 239 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVSG----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 239 (459)
T ss_dssp EEEETTTTEEEEEEEESS----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred EEEecCCceEEEEeeeCC----------------ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh
Confidence 667776655433322211 255688999999988876431 12
Q ss_pred ---------------EEEECCCC---eeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccC-------
Q 015301 167 ---------------YVYDLQAN---KCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISK------- 220 (409)
Q Consensus 167 ---------------~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~------- 220 (409)
.+.|.... ..+..++.. .....+..+ |+++++++++ .+.++.++|++.....
T Consensus 240 e~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vS-PDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~ 317 (459)
T d1fwxa2 240 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 317 (459)
T ss_dssp HHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-G
T ss_pred HHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEEC-CCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCc
Confidence 33333221 112222221 234577888 7887776654 6889999998632111
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
...+.......-....-+|..+|....+.--|..|.-|++..
T Consensus 318 ~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 318 RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 011111111222345567888886666666799999999864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.87 E-value=0.0067 Score=52.74 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=50.1
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcc-eeeeEEecCcC-eEEee-c------------------------
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP-VRDCCWHPIYP-MLISS-S------------------------ 374 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~s~-~------------------------ 374 (409)
+..+.+++.|+.||.++.+|.++|+.+.+++..... -.-+.|..+|+ |++.. +
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~ 560 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVG 560 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHH
T ss_pred EecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEecCCccccccccccccCccccccccc
Confidence 335778889999999999999999999888643221 11244556777 55432 1
Q ss_pred ----------CCCeEEEEecCCCcccCCCc
Q 015301 375 ----------WDCNIVRWEIPGIGEAPLPK 394 (409)
Q Consensus 375 ----------~dg~i~iw~~~~~~~~~~~~ 394 (409)
..|.|.++.+....+.+.+.
T Consensus 561 ~~~~~~~~~~~g~~l~vf~l~g~~~~~~~~ 590 (596)
T d1w6sa_ 561 AFKKLANYTQMGGGVVVFSLDGKGPYDDPN 590 (596)
T ss_dssp HTTTGGGTCCCCCEEEEEEETTCCTTSSTT
T ss_pred cccccccccCCCCEEEEEEeCCCCCCCCCC
Confidence 13679999998766655544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.86 E-value=0.0027 Score=55.29 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=41.2
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.|.-||+.+++.+-... +..++..-..+..+.+++.|+.||.++.+|..++++.
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L 507 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence 678899999999876654 2333333334456778888999999999999998775
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.81 E-value=0.0084 Score=51.95 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee-eeEEecCcC-eEEeecC----------------CCeEEEEec
Q 015301 323 TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYP-MLISSSW----------------DCNIVRWEI 384 (409)
Q Consensus 323 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~-~l~s~~~----------------dg~i~iw~~ 384 (409)
-.+.+|++|+.||.++.+|.++|+.+.+++...+... -+.|..+|+ |++..+. .+.|.++.|
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l 565 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVV 565 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEe
Confidence 3578899999999999999999999988864322111 145566887 4443221 246777777
Q ss_pred CCCccc
Q 015301 385 PGIGEA 390 (409)
Q Consensus 385 ~~~~~~ 390 (409)
....+.
T Consensus 566 ~g~~~~ 571 (573)
T d1kb0a2 566 GGKARM 571 (573)
T ss_dssp TCBCCC
T ss_pred CCcCCC
Confidence 654443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.79 E-value=0.0048 Score=53.35 Aligned_cols=55 Identities=5% Similarity=0.013 Sum_probs=41.0
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.+.-+|+.+++.+-+... ..+...-..+-.+.++++++.||.++.+|..++++.
T Consensus 438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 6788899999998877653 223333334445678888999999999999998764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=0.0052 Score=47.15 Aligned_cols=235 Identities=7% Similarity=-0.037 Sum_probs=132.2
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCee
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKC 176 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~ 176 (409)
.+|+.+. .+.|+-.+++................ ...+..++|.+..+.+.... .++.|...++.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~----------~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~ 70 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIP----------AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEE----------EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccC----------CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc
Confidence 4555544 35677777765543322221111111 12477899998777776654 467899889876655
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-CcE
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-QTT 255 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i 255 (409)
...+......+.++++....+++.++-...+.|.+.++. .................+++.|...++...... +..
T Consensus 71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~ 146 (263)
T d1npea_ 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (263)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC----CceEEEEecccccCCcEEEEecccCcEEEeecCCCCc
Confidence 544544446789999984455555666677899999864 222222222333567899999877666544322 232
Q ss_pred EEe--eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-e
Q 015301 256 KLW--DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-S 332 (409)
Q Consensus 256 ~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~ 332 (409)
+|+ ++.... ...+.... . .....+++++.++.|... .
T Consensus 147 ~I~r~~~dG~~-----------------------------------~~~i~~~~-~----~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 147 KIETSHMDGTN-----------------------------------RRILAQDN-L----GLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp EEEEEETTSCC-----------------------------------CEEEECTT-C----SCEEEEEEETTTTEEEEEET
T ss_pred EEEEecCCCCC-----------------------------------ceeeeeec-c----cccceEEEeecCcEEEEEeC
Confidence 343 333211 11111000 0 111244566666666555 4
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+.|...++........+.+... ..+|++. ++.+..+-...+.|...|..+++.
T Consensus 187 ~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 187 GTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCcc
Confidence 578899999866554444444333 3577775 334444444668888888876654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.70 E-value=0.004 Score=54.03 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=40.9
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|.+.-||+.+++.+-+.+.. .+...=..+-.+.++++++.||.++.+|..++++.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 56888999999988777633 22222233446778889999999999999998875
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.29 E-value=0.034 Score=46.06 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=107.1
Q ss_pred cCCCCeEEEEECCCCCEEEEE-e----CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC------
Q 015301 38 GMNSRVYTSQFSNDGSFFVAA-S----QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC------ 106 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~-~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 106 (409)
++.-.+....+|||++++|.+ + ....+++.|+++++.+...+... ....++|++|++.|+....+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~----~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV----KFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE----CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc----cccceEEcCCCCEEEEEEeccccCcc
Confidence 344445567889999998843 2 23469999999996654333211 12457899999988765432
Q ss_pred ----------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCe--EEEEEC
Q 015301 107 ----------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNF--IYVYDL 171 (409)
Q Consensus 107 ----------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~--i~v~d~ 171 (409)
..|..+.+.+........... ......+..+..++++++++.... +.. +.+.|+
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e-----------~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~ 266 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL 266 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred cccccccCCcceEEEEECCCCcccccccccc-----------ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeC
Confidence 257777776654332221111 011223666778999998875443 223 445555
Q ss_pred CCCee--------eeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeee-eccccceeEEEE
Q 015301 172 QANKC--------SLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDS 239 (409)
Q Consensus 172 ~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~ 239 (409)
..... ............-+.. .++.+++... .++.|...++... .......+ ..+...+..-.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Tn~~a~~~~L~~~~~~~~--~~~~w~~vi~~~~~~~~~~~~ 342 (430)
T d1qfma1 267 QQESNGITGILKWVKLIDNFEGEYDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDP--EESKWKVLVPEHEKDVLEWVA 342 (430)
T ss_dssp GGSSSSSCSSCCCEEEECSSSSCEEEEEE--ETTEEEEEECTTCTTCEEEEEETTBC--CGGGCEEEECCCSSCEEEEEE
T ss_pred CCcccccccccceeEeecccccceEEEec--CCceeecccCcccccceeEEecCCCC--ccccceEEecccCcceeeeEE
Confidence 43211 1222222233333322 2333444333 2456666665421 11111223 334444443334
Q ss_pred cCCCCeEEEEe-CCC--cEEEeeCCC
Q 015301 240 RRDGRYFISNG-KDQ--TTKLWDIRK 262 (409)
Q Consensus 240 ~~~~~~l~~~~-~dg--~i~iwd~~~ 262 (409)
...+.+|+... .++ .|+++++..
T Consensus 343 ~~~~~~lvl~~~~~~~~~l~v~~~~~ 368 (430)
T d1qfma1 343 CVRSNFLVLCYLHDVKNTLQLHDLAT 368 (430)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTT
T ss_pred EEECCEEEEEEEcCCEeEEEEEECCC
Confidence 44455565544 444 578888766
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.27 E-value=0.047 Score=47.24 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.|.|.-+|+.+++.+-+...+ .++..-..+..+.++++++.||.++.+|.+++++.
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence 377889999999988877643 33333334556778888999999999999998875
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.026 Score=43.25 Aligned_cols=210 Identities=8% Similarity=-0.078 Sum_probs=116.7
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~ 110 (409)
.+......+.+++|.+.++.|.-.. .++.|.--+++..... ...... .....+..+++.+.+..|..+ ...+.|.
T Consensus 24 ~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~p~glAvD~~~~~lY~~d~~~~~I~ 102 (266)
T d1ijqa1 24 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (266)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCCCCcceEEEeeccceEEEEecCCCEEE
Confidence 4444556788999998887776554 4566776666532111 111111 112246678887766555555 4567899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
+.++........... .......+++.|...+|..... .+.|.-.++............-....
T Consensus 103 v~~~~g~~~~~~~~~---------------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~ 167 (266)
T d1ijqa1 103 VADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (266)
T ss_dssp EEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred eEecCCceEEEEEcC---------------CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence 999876543222111 0114678899886655655432 35677777754443333333446678
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.+++.+..+.+..+-...+.|...++. ......+...........++++. ++..+.+-..++.|...+..+.
T Consensus 168 gl~iD~~~~~lYw~d~~~~~I~~~~~d--G~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEeeccccEEEEecCCcCEEEEEECC--CCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 999994444455555667888888864 11111111112222335567766 3444444456777877776653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.032 Score=42.71 Aligned_cols=188 Identities=8% Similarity=-0.015 Sum_probs=107.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
+|+.+.. ..|+-.++++... ...... ...+.+++|.+..+.|..+. ..+.|.-.++............
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~-~~~~~~---~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~------ 71 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEY-TSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ 71 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCC-EEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------
T ss_pred EEEEECC-CeEEEEECCCCcc-eeeeCC---CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE------
Confidence 3444433 3588888876532 222221 22577899998887777664 4566766666432211100000
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEE
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCK 210 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 210 (409)
.. .....+..+++.+.+..|..+. ..+.|.+.++........+.........+++.|..+.++.+-. ..+.|.
T Consensus 72 --~~---~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~ 146 (266)
T d1ijqa1 72 --IS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (266)
T ss_dssp --EC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred --Ee---CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCccee
Confidence 00 0011366788877666666554 4578999999866655555555677899999965665555532 334555
Q ss_pred EecccccccCCceeeee-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCC
Q 015301 211 VWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 262 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 262 (409)
-.++ .+.....+ ...-.....+++.+.++.|..+ ...+.|...++..
T Consensus 147 r~~~-----dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 147 KGGL-----NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp EEET-----TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred Eecc-----CCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence 5554 22222222 2233556889999877766655 4567888888765
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.71 E-value=0.096 Score=41.48 Aligned_cols=199 Identities=12% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEE------eCCCCcEEEEEecC----CEEEEEEcCCCc
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTS------LSPDQRFLVYASIC----AIVNIVDVGSSA 118 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~d----g~i~~w~~~~~~ 118 (409)
.|+..+++....++-|++||++ ++.+... .. +.++.+. +.....-+++++.. ..|.+|.+....
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~-~~----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~ 110 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSY-HT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEETT-CCEEEEC-CS----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred CcCccEEEEEcCcCCEEEEcCC-CcEEEec-cc----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc
Confidence 3456777777777679999996 4344432 11 1344433 33333345666532 368888775332
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEE--cCC-CC-eEEEEEecCeEEEEECC---CC----eeeeEEcCCCCCe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKF--STD-GQ-ELVAAGSDNFIYVYDLQ---AN----KCSLRIPAHKSDV 187 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v 187 (409)
... ......... .. .....++.+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. -...+
T Consensus 111 ~~l-~~~~~~~~p--~~----~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~ 182 (353)
T d1h6la_ 111 GTL-QSITDPNRP--IA----SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQT 182 (353)
T ss_dssp TEE-EECSCSSSC--EE----CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCE
T ss_pred ccc-ccccccccc--cc----cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCcc
Confidence 110 000000000 00 00113566666 553 44 45666668988888763 23 2334444 35678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccC-Cceeeeee--ccccceeEEEEc--CCCC-eEEEE-eCCCcEEEeeC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSR--RDGR-YFISN-GKDQTTKLWDI 260 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~--~~~~-~l~~~-~~dg~i~iwd~ 260 (409)
..|.+. .....|+.+-++.-+..++....... ...+.... .....+..++.- .++. +|+++ -.+++..+||.
T Consensus 183 EGCVvD-de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 183 EGMAAD-DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp EEEEEE-TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEe-CCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 999998 67778888877766655554311111 11111111 134566777643 2333 44444 45788999998
Q ss_pred CC
Q 015301 261 RK 262 (409)
Q Consensus 261 ~~ 262 (409)
..
T Consensus 262 ~~ 263 (353)
T d1h6la_ 262 QG 263 (353)
T ss_dssp ST
T ss_pred CC
Confidence 66
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.69 E-value=0.16 Score=43.82 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=37.2
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcce-eeeEEecCcC-eEEe
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPV-RDCCWHPIYP-MLIS 372 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~s 372 (409)
+..+.++++|+.||.++-+|.++|+.+.+++...... .-+.|..+|+ |++.
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 3457788899999999999999999998886432211 1256677887 5543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.51 E-value=0.11 Score=39.64 Aligned_cols=202 Identities=8% Similarity=0.072 Sum_probs=121.9
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
+.-.+|..+.||.-+ ..++.++|+++.++++...- .. +|.-=.|-.+ +.|+..+ +..|+-|+++.... . .+
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e---~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~-P-~k 137 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD---DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ-P-VK 137 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SS---CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCC-C-EE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CC---CcEEEEecCC-CEEEEEc-CCceEEEcccCCCC-c-hh
Confidence 344689888888766 56899999999877665432 22 5666677644 3455444 56799999965331 1 11
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEe--CC
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFA--DE 195 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~ 195 (409)
..+.+.. -....|.....+++.++++..+- .|.+.+|..+.+ ..+.+++|.+.-..+... +.
T Consensus 138 ~fdR~~~--------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~ 208 (327)
T d1utca2 138 MFDRHSS--------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAE 208 (327)
T ss_dssp EEECCGG--------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSS
T ss_pred hhhhccc--------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCC
Confidence 2111111 12336888888899998776542 478899998754 356677776555555443 01
Q ss_pred CCcEEEEee---CCCeEEEecccccccCCce----eeee-e---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 196 TGHLIFSGS---DDSLCKVWDRRCFISKGRA----NGVL-M---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 196 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~----~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
...+++.+. ..+.+.+.++......... ...+ . ...+-..++..++.-..+...+.-|.+.+||+.+..
T Consensus 209 ~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt 288 (327)
T d1utca2 209 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 288 (327)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence 112333322 2367888887532111111 1111 1 112345577788888888889999999999999843
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.48 E-value=0.17 Score=41.68 Aligned_cols=101 Identities=10% Similarity=0.198 Sum_probs=62.9
Q ss_pred ceEEEEEeCCCCcEEEEEe-cC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 86 WTITDTSLSPDQRFLVYAS-IC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~-~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+...++||++++++.+- .+ ..++++|+.+++..... +... ....++|.++++.|+..
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~---------------~~~~~~W~~D~~~~~Y~ 188 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERV---------------KFSCMAWTHDGKGMFYN 188 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEE---------------CSCCEEECTTSSEEEEE
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccc---------------cccceEEcCCCCEEEEE
Confidence 3456678899999998653 23 37999999998753211 1100 12468899999988765
Q ss_pred Eec----------------CeEEEEECCCCeee--eEEcCC--CCCeEEEEEeCCCCcEEEEe
Q 015301 161 GSD----------------NFIYVYDLQANKCS--LRIPAH--KSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 161 ~~d----------------~~i~v~d~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~~l~~~ 203 (409)
..+ ..|..+.+.+.... ..+... ...+..+..+ .++++++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~ 250 (430)
T d1qfma1 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLS 250 (430)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEE
T ss_pred EeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc-CCcceeeEE
Confidence 432 25788888765332 233322 2345566677 777777643
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.17 Score=40.51 Aligned_cols=143 Identities=9% Similarity=0.048 Sum_probs=78.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|..++|+.| .|+... ++.+..++...-......... ..++..+.++|. .++....++.+.++++......
T Consensus 87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~ 158 (381)
T d1xipa_ 87 PDVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSF---EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK 158 (381)
T ss_dssp TTEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEEC---SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred CCeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccc---cccccceecCCc--eeEEEecCCCEEEEEeccCccc
Confidence 46899999754 455553 456888887654333222222 236888888875 4566667899999999887543
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEE-ECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVY-DLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
.... ......+ ...+.+++|++.|+.++++..+ ...+- ++.....+..-......|.++.|. .+..+
T Consensus 159 ~~~~---~v~~~~~-------~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL-~~~~F 226 (381)
T d1xipa_ 159 QLAQ---NVTSFDV-------TNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQDF 226 (381)
T ss_dssp EEEE---SEEEEEE-------CSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSEE
T ss_pred cccC---CcceEEe-------cCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEe-cCceE
Confidence 2211 1111111 1247888888888877776322 22111 111111110011234568899998 55555
Q ss_pred EEEe
Q 015301 200 IFSG 203 (409)
Q Consensus 200 l~~~ 203 (409)
+++-
T Consensus 227 ~vvy 230 (381)
T d1xipa_ 227 LAVF 230 (381)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.19 E-value=0.21 Score=39.55 Aligned_cols=195 Identities=8% Similarity=0.039 Sum_probs=100.4
Q ss_pred eEEEEECCCCCEEEEEeC------------CCcEEEEEcCCCeeeeeeeeccc-----ccceEEEEEe--CCCCc-EEEE
Q 015301 43 VYTSQFSNDGSFFVAASQ------------ESNIKVYNVDKNWKIQKDIETKA-----LRWTITDTSL--SPDQR-FLVY 102 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~------------d~~i~vw~~~~~~~~~~~~~~~~-----~~~~v~~~~~--s~~~~-~l~~ 102 (409)
--.++..|+|..+++++. .|.|.++|+.+...........+ ..-....+.. .++++ +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 346788899887766542 38899999876533322222111 1112344433 44555 3444
Q ss_pred E---ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---------------cC
Q 015301 103 A---SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---------------DN 164 (409)
Q Consensus 103 ~---~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~ 164 (409)
. ....+|.+|++........ ..... ........+++++..++..+++-.. -+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~--~~~~v--------~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLL--HLKTI--------RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEE--EEEEE--------CCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred EeccCCCceeEEEEEeCCCCeEE--EEeec--------CCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 4 2456788888765432111 00000 0111224788888888877766211 01
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
...+|....++...... .-...+.++++ +++++| ++-+..+.|+.|++.. ...........-....-.+.+.+++
T Consensus 187 ~g~v~~~~~~~~~~~~~-~l~~pNGI~~s-~d~~~lyVa~t~~~~i~~y~~~~--~~~l~~~~~~~l~~~pDNi~~d~~~ 262 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAE-GFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHA--NWTLTPLRVLSFDTLVDNISVDPVT 262 (340)
T ss_dssp CEEEEEECSSCEEEEEE-EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT--TSCEEEEEEEECSSEEEEEEECTTT
T ss_pred ceeEEEEcCCceEEEcC-CCCccceeEEC-CCCCEEEEEeCCCCeEEEEEeCC--CcccceEEEecCCCCCCccEEecCC
Confidence 23344333333322222 33567999999 666555 5556778899999752 1111111111233455677777644
Q ss_pred CeEEEEeC
Q 015301 244 RYFISNGK 251 (409)
Q Consensus 244 ~~l~~~~~ 251 (409)
..+.+++.
T Consensus 263 g~lwva~~ 270 (340)
T d1v04a_ 263 GDLWVGCH 270 (340)
T ss_dssp CCEEEEEE
T ss_pred CEEEEEEC
Confidence 34444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.15 E-value=0.21 Score=39.42 Aligned_cols=153 Identities=10% Similarity=0.130 Sum_probs=81.3
Q ss_pred CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--c--CeEEEEEC
Q 015301 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--D--NFIYVYDL 171 (409)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~v~d~ 171 (409)
+..+++....++-|++||+...+.... ..... ..+. -...+.+.....-+++++. + ..|.+|.+
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~-~~Gr~-NNVD----------vr~~~~l~~~~~di~vasnR~~~~~~l~~~~i 106 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLEGKMLHSY-HTGKL-NNVD----------IRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (353)
T ss_dssp GGCEEEEEETTSCCEEEETTCCEEEEC-CSSCE-EEEE----------EEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred CccEEEEEcCcCCEEEEcCCCcEEEec-ccCCc-Cccc----------cccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence 455666666777799999975443322 11111 1100 0112223223333555553 1 36777776
Q ss_pred CC-CeeeeEEcC-------CCCCeEEEEE--eCCCCc-EEEEeeCCCeEEEeccccccc---CCceeeeeeccccceeEE
Q 015301 172 QA-NKCSLRIPA-------HKSDVNTVCF--ADETGH-LIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEGITFI 237 (409)
Q Consensus 172 ~~-~~~~~~~~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~v~~~ 237 (409)
.. ...+..+.. ....+..+|+ ++.++. ++++...+|.+..|.+..... ....+..+. -...+..+
T Consensus 107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGC 185 (353)
T d1h6la_ 107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGM 185 (353)
T ss_dssp ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEE
T ss_pred cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceE
Confidence 42 222332221 1123556666 544554 466677889999887642111 112233332 34568889
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+......|+.+-++..+..++..
T Consensus 186 VvDde~~~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 186 AADDEYGSLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEETTTTEEEEEETTTEEEEEESS
T ss_pred EEeCCCCcEEEecCccceEEEEec
Confidence 999988888888777666555543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.76 Score=36.65 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=64.1
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCC-----------CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQA-----------NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
...-++.++...++++|+.++ +.|...+. ........ -..|..++|+ .+ .|+.. .++.+..+
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs-~d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH-GD--QVLVS-TRNALYSL 110 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE-TT--EEEEE-ESSEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEee-CC--EEEEE-eCCCEEEE
Confidence 366688888777788777664 66665321 11111111 2368899998 33 34443 45667777
Q ss_pred cccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 213 DRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+.. ..........-..++..+.++|. .++....+|.+.++++.+.
T Consensus 111 ~~~----~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~ 155 (381)
T d1xipa_ 111 DLE----ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK 155 (381)
T ss_dssp ESS----STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred Eee----ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccC
Confidence 754 22222333333456777777764 4666777888999988773
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=1 Score=34.12 Aligned_cols=64 Identities=13% Similarity=0.015 Sum_probs=33.4
Q ss_pred CCEEEEEeCC-----CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC-----eEEEEecCCCc
Q 015301 325 QKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC-----NIVRWEIPGIG 388 (409)
Q Consensus 325 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 388 (409)
+++++.|+.+ .....+|..+.+....-.........-+...++++++.|+.++ .|.+||+....
T Consensus 196 ~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 4555555443 3467777766544322111112221122233677777776543 47888887643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.05 E-value=2.6 Score=34.51 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=38.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec------ccccceEEEEEeCCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET------KALRWTITDTSLSPD 96 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~ 96 (409)
-..-++|+|.|||++|++--..|.|++++..++.... .... ..-......|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~-i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee-cccCCccccccCCCCceeeEEeCCC
Confidence 3567899999999988877557999999877763322 1111 112346789999995
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=90.96 E-value=1.7 Score=30.30 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=77.1
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCC--------CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMN--------SRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-- 72 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~--------~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-- 72 (409)
+-+-|+|||+|+..+.....+..--.+....+.+-... +.-..+-|.|.|-+.++. ++ .+|.-.-.
T Consensus 41 n~~~i~fsP~G~LyaVr~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~~pPtn 116 (235)
T d1tl2a_ 41 NFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKASPPQS 116 (235)
T ss_dssp TCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEESCCCS
T ss_pred ceeEEEECCCCcEEEEECCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--Cc--ceecCCcCcc
Confidence 34679999999987776666555444443333222222 334567889999766666 34 56654322
Q ss_pred eee-----eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 73 WKI-----QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 73 ~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
+.. .......+ =+.+..+-|.|+|.+-++.+ + .+.-+....+....-...... +. .++-...+-
T Consensus 117 ~~q~W~g~a~~vG~~g-w~df~~lFFdP~G~LYaV~~-~-~l~k~~pP~~~~d~WL~~st~-----ig---r~~w~~~~f 185 (235)
T d1tl2a_ 117 DTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVHG-Q-QFYKALPPVSNQDNWLARATK-----IG---QGGWDTFKF 185 (235)
T ss_dssp TTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEET-T-EEEEECCCSSTTCCHHHHCEE-----EE---SSSGGGEEE
T ss_pred cchhhhhhhhhhccCC-cCceeEEEECCCceEEEEEC-C-cEEEcCCCCCCCchhhhhhhh-----hc---cCcccCceE
Confidence 110 11111111 22577899999998877733 3 466665444332211111110 10 122334678
Q ss_pred EEEcCCCCeEEE
Q 015301 148 VKFSTDGQELVA 159 (409)
Q Consensus 148 ~~~~~~~~~l~~ 159 (409)
+.|+|+|.+..+
T Consensus 186 i~Fs~dG~L~~v 197 (235)
T d1tl2a_ 186 LFFSSVGTLFGV 197 (235)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCcEEEE
Confidence 999999987665
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.71 E-value=2.9 Score=32.41 Aligned_cols=248 Identities=8% Similarity=0.003 Sum_probs=128.9
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEE---C
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYD---L 171 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d---~ 171 (409)
|+...+++-+.+|.|+--.+.+-+...... ..+ .....+..+........|+.-+..|.++... +
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~-------~~~-----k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~ei 70 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQD-------FAM-----KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHEL 70 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCC-------CCC-----CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCC-------Ccc-----cCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccC
Confidence 567788889999999866554321111000 000 0111344444444555566667778776554 3
Q ss_pred CC------CeeeeEEc--CCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEecccccccC----CceeeeeeccccceeEE
Q 015301 172 QA------NKCSLRIP--AHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFISK----GRANGVLMGHLEGITFI 237 (409)
Q Consensus 172 ~~------~~~~~~~~--~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~v~~~ 237 (409)
.. |.++..+- .....+..+...+ ....+|+..+..|.++..++..+... +.....+ ...+.+..+
T Consensus 71 P~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v 149 (323)
T d1wp5a_ 71 PDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDV 149 (323)
T ss_dssp CBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEE
T ss_pred cccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccce
Confidence 32 33332221 1233444443331 23568888899999999987644221 1111222 244556666
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
....+...++.++..|.+..++............ +.....+.... .+..
T Consensus 150 ~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~-------------------------GV~~ikL~~~D---~vv~--- 198 (323)
T d1wp5a_ 150 HLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-------------------------GVKGMNLKEGD---YIVS--- 198 (323)
T ss_dssp EEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-------------------------CEECCCCCTTC---CEEE---
T ss_pred eccCCCeEEEEEEecceeeEeecccccccCcccc-------------------------ccccccccccc---ccch---
Confidence 6666667788889999999998765322111100 11111111111 1111
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCc-------eEEEec---cCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGA-------QVAKLD---FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.....+++..|+..+..|..+.-.+..-. -+..++ .....|..+....+...|+..+..|.+.-.++..
T Consensus 199 ~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~~ 277 (323)
T d1wp5a_ 199 GQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred hhhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhhh
Confidence 11233456788889999988887664321 122222 1223455555555555555566677766555443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.67 E-value=2 Score=30.62 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee--EEcC-------CCCCeEEEEEeCCCCcEEEEeeC-CCeEEEec
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL--RIPA-------HKSDVNTVCFADETGHLIFSGSD-DSLCKVWD 213 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~-------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd 213 (409)
.|.+++.. +.+..++|+......+|-++.|+... .++. ....|..+.+..++..-++++.. .|.+++++
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t 183 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 183 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence 46677664 34456677777778888888887543 2221 22344555554344444556655 77777777
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC---CCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK---DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
. ..+.++...+.+..+. ++.-. .....-+|+++..-......
T Consensus 184 p---------------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P------------------- 228 (313)
T d2hu7a1 184 S---------------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELP------------------- 228 (313)
T ss_dssp C---------------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCS-------------------
T ss_pred C---------------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecC-------------------
Confidence 3 2344555555554443 33322 11222346654221110000
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF 353 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 353 (409)
...+..++. ..++-+-+.|++++++.+-.||.-++|. +|+.+.+-++
T Consensus 229 ------~kd~~sy~p--------~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 229 ------SKDFSSYRP--------TAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp ------SCHHHHHCC--------SEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred ------cccceeecc--------eEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCC
Confidence 011111111 1223345889999999999999999986 6777665554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=2.9 Score=31.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.8
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCc
Q 015301 324 AQKYIYTGSSDN-----SVYIYDLVSGA 346 (409)
Q Consensus 324 ~~~~l~~~~~dg-----~v~i~d~~~~~ 346 (409)
++++++.|+.++ .|.+||+.+.+
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 577777776543 37888887653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.17 E-value=4.3 Score=28.90 Aligned_cols=150 Identities=14% Similarity=0.155 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc-CCCCeEEEEEe-cC
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS-TDGQELVAAGS-DN 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-d~ 164 (409)
.|.+++.. +.+..++|+......+|-++.++...+.......--.....+ -|..+.+- ++..-++++.. .|
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d------~I~G~g~~~g~~~sfF~adl~SG 177 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGD------LIAGLGFFGGGRVSLFTSNLSSG 177 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETT------EEEEEEEEETTEEEEEEEETTTE
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCC------eEEEEeeecCCcceEEEEecccC
Confidence 67777775 456777888888889999999887665554432211111100 12333222 22223444433 45
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeee-eec------cccce
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGV-LMG------HLEGI 234 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-~~~------~~~~v 234 (409)
.+++++...| .++...+. +..+ ++++.+. .....+|++ .++.... +.. ....|
T Consensus 178 ~lri~tpkeG-----------S~~~ay~~-~gnK-V~sdyEt~gEsywit~D~~----s~~yerve~P~kd~~sy~p~~I 240 (313)
T d2hu7a1 178 GLRVFDSGEG-----------SFSSASIS-PGMK-VTAGLETAREARLVTVDPR----DGSVEDLELPSKDFSSYRPTAI 240 (313)
T ss_dssp EEEEECCSSE-----------EEEEEEEC-TTSC-EEEEEEESSCEEEEEECTT----TCCEEECCCSSCHHHHHCCSEE
T ss_pred CEEEecCCCC-----------cccceeEc-cCce-eeeccCCCCceEEEEEecc----cCceeeeecCcccceeecceEE
Confidence 5555555444 34444444 2222 2332211 112233543 1111110 110 12346
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeC
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDI 260 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~ 260 (409)
+-+-+.|++++++.+-.||.-++|.-
T Consensus 241 ~~~~Y~Pdd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 241 TWLGYLPDGRLAVVARREGRSAVFID 266 (313)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EeeeeCCCCcEEEEEecCCchheeec
Confidence 66779999999899999999999873
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.68 E-value=6.4 Score=30.36 Aligned_cols=214 Identities=9% Similarity=0.083 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEE---EEcCC------CeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKV---YNVDK------NWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIV 109 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~v---w~~~~------~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 109 (409)
+.+..+........|+.-+..|.++. |++.. |..+............+..+...+ ...+|+..+..|.+
T Consensus 39 D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~i 118 (323)
T d1wp5a_ 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred ceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhhe
Confidence 34554444444445555556676554 44442 222222222222222344444433 46788899999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee-------eEEcC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS-------LRIPA 182 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------~~~~~ 182 (409)
+...+..-....... ....+.+ .....+..+....+...++.++..|.+..++...-... .-+..
T Consensus 119 Kr~~l~~f~~~~~~~---g~~~i~L-----~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL 190 (323)
T d1wp5a_ 119 KKTELKHYKAQRYSK---PLTGINL-----KNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL 190 (323)
T ss_dssp EEEEGGGGCCSCCSS---CEECSCC-----CTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC
T ss_pred eeccHHHhhhhhccc---hhhhccc-----cccccccceeccCCCeEEEEEEecceeeEeecccccccCccccccccccc
Confidence 998875432111000 0000001 11224666777777778888999999999987542221 11211
Q ss_pred -CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---ceeeee---eccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 183 -HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---RANGVL---MGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 183 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
....+..+...++++..|+..+..|..+.-.+....... .-...+ ......+..+....+...++..+..|.+
T Consensus 191 ~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~ 270 (323)
T d1wp5a_ 191 KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred ccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEE
Confidence 234566555544667788888999988876654221111 111111 1122345555555555666667777776
Q ss_pred EEeeCCC
Q 015301 256 KLWDIRK 262 (409)
Q Consensus 256 ~iwd~~~ 262 (409)
.-.++..
T Consensus 271 ~r~~~~~ 277 (323)
T d1wp5a_ 271 ETIKVGD 277 (323)
T ss_dssp EEEEGGG
T ss_pred EEEEhhh
Confidence 6555443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=85.52 E-value=6.7 Score=30.49 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=86.3
Q ss_pred EEEEEeCCCCcEEEEEec------------CCEEEEEEcCCCccccccceeceeeeeeeecC-CCCcceeeEEEEE--cC
Q 015301 88 ITDTSLSPDQRFLVYASI------------CAIVNIVDVGSSARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKF--ST 152 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~~~------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~--~~ 152 (409)
...|+..|+|..+++++. .|.|.++|+.+......... +... ..........+.+ .+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~--------~~~~~~~~~~f~PhGi~l~~~~ 108 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE--------IIGNTLDISSFNPHGISTFIDD 108 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECE--------EECSSSCGGGCCEEEEEEEECT
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEE--------ecCCCCCCcceeccceeEEEcC
Confidence 345677777776665532 48899999876543221111 0000 0001112233333 44
Q ss_pred CCC-eEEEEE---ecCeEEEEECCCCe--ee--eEEc-CCCCCeEEEEEeCCCCcEEEEee-----------------CC
Q 015301 153 DGQ-ELVAAG---SDNFIYVYDLQANK--CS--LRIP-AHKSDVNTVCFADETGHLIFSGS-----------------DD 206 (409)
Q Consensus 153 ~~~-~l~~~~---~d~~i~v~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~-----------------~d 206 (409)
+|. +|++.. ...+|.++++.... .. ..+. ......++++.. .++.+++|-. ..
T Consensus 109 dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~ 187 (340)
T d1v04a_ 109 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAW 187 (340)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe-cCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence 565 344443 34678888875432 21 2222 123457888888 6777777721 12
Q ss_pred CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
+.+.-|| .+. .......-...+.|+++|++++|+++. ..+.|+.|++..
T Consensus 188 g~v~~~~------~~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 188 SFVTYYS------PND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp EEEEEEC------SSC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eeEEEEc------CCc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 2344444 222 222333345678999999998776554 577899999875
|