Citrus Sinensis ID: 015303

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccEEEcHHHHHHHHHccccHHHHHcccccccEEEEEcccccEEEEcccHHHcccccccEEEEEHHHHHHHHHHHcccccEEEccEEEEEEEEccEEEEEEccccEEEccEEEEcccccHHHHccccccccccccEEEEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHccccccEEEccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccHHHHHHHHHHHHccccEEEEEccHHHcccccHHcccHHHHHHHHHcccHHHHHHHccccccEEEEEcccccEEEEcccccHcccccccEEEEcHHHHHHHHHHHcccccEEEccEEEEEEEccccEEEEEEcccEEEEEEEEEccccHHHHHHHHcccccccccEEEEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEEcccccccccccccHHHHHHHHHHHccccHHHHHHHHHccHHHHcHHHHHccccHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIvatptisgkpsserslkvqgkygehemRCVRRKLLLETLAKelpsgtiryssQVVSIEesghfkllhladgtilktkVLIGCDGVNSIVAKWLgfknpafvgrsairgysdfkgshgfepnflqffgkglrsgfipcddqtIYWFFtwtsssqdkeLEDHSAELKQFVLGKLHDLPAQVKAVIEktpldsiissrlqyrqpqevlwgnisrgsvcvagdalhpmtpdigqggcaaLEDGIVLARCINEALKtkqgvgeedeEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLkkadfdcgnltst
Flexible Loop (DISEMBL)
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIvatptisgkpsserslkvqgkygehemrcVRRKLLLETLAKelpsgtiryssQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALktkqgvgeedeeefnKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLllkkadfdcgnltst
Low Complexity Region (SEG)
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST
Disordered region (IsUnstruct)
*****DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR********************************EHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWT***************KQFVLGKLHDLPAQV***********************EVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT***************VEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCG*****
Disordered Region (DISOPRED)
***VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ********AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT**
Disordered Region (DISEMBL)
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT******************EHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT*************KRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST
Disordered Region (DISPRO)
***VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG*********NKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGN****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.801	0.854	0.252	9e-22
A6T923	384	FAD-dependent urate hydro	yes	no	0.801	0.854	0.252	1e-21
P86491	385	6-hydroxynicotinate 3-mon	yes	no	0.655	0.696	0.263	3e-17
B5B0J6	384	FAD-dependent urate hydro	yes	no	0.694	0.739	0.253	4e-17
Q9FGC7	667	Zeaxanthin epoxidase, chl	no	no	0.784	0.481	0.267	2e-15
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.816	0.847	0.265	1e-14
P93236	669	Zeaxanthin epoxidase, chl	N/A	no	0.792	0.484	0.253	2e-14
Q40412	663	Zeaxanthin epoxidase, chl	N/A	no	0.728	0.449	0.262	7e-14
Q5EXK1	397	3-hydroxybenzoate 6-hydro	no	no	0.701	0.722	0.260	4e-13
Q0JCU7	659	Zeaxanthin epoxidase, chl	no	no	0.811	0.503	0.254	7e-13

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 21/349 (6%)

Query: 8   VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
           +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G+G+ +  
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 68  QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
               LR +      SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 122

Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
            +V   EE      +   DG+     +LI  DG +S +  W+      F  +    GY +
Sbjct: 123 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 178

Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
           + G         P   +  F G+G R   +P      Y+FF     +   E  D   A+L
Sbjct: 179 WNGLVEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 238

Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
            ++  G    +   + A      LD   ++R++    +   +  + RG V + GDA H  
Sbjct: 239 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 290

Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
           TPDIGQGGCAA+ED +VL     +       + E + +  ++  ++ LK
Sbjct: 291 TPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALCEYEAQRCDRVRDLVLK 339

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae (taxid: 573)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 21/349 (6%)

Query: 8   VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
           +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G+G+ +  
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 68  QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
               LR +      SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 122

Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
            +V   EE      +   DG+     +LI  DG +S +  W+      F  +    GY +
Sbjct: 123 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 178

Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
           + G         P   +  F G+G R   +P      Y+FF     +   E  D   A+L
Sbjct: 179 WNGLVEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 238

Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
            ++  G    +   + A      LD   ++R++    +   +  + RG V + GDA H  
Sbjct: 239 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 290

Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
           TPDIGQGGCAA+ED +VL     +       + E + +  ++  ++ LK
Sbjct: 291 TPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 339

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 134/326 (41%), Gaps = 58/326 (17%)

Query: 27  GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQ-----HQQLRSIVATPTI 81
           G    V E + S    G    V  N  K L  +GI ++L +Q     +   R       +
Sbjct: 27  GFNVRVYEQAPSFSRLGAGIHVGPNVMKILRRIGIEDALNEQGSHPDYWYSRHWQTGDVL 86

Query: 82  SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLL 141
           +  P  + ++K   +YG   +  V R      L + LP   + Y   +  +E+ G+  ++
Sbjct: 87  AQIPLGDYAVK---EYGASYL-TVHRGDFHALLVEALPDSVMAYGKFLTKVEDRGNVVVM 142

Query: 142 HLADGTILKTKVLIGCDGVNS-IVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQF 200
           H ADGT  +  ++IG DGVNS I  + LG + P + G  A R                 F
Sbjct: 143 HFADGTTEEADIVIGPDGVNSRIREELLGPELPKYAGYLAHRAV---------------F 187

Query: 201 FGKGLRSGFIPCDDQTIYW--------FFTWTSSSQ---------------DKELEDHSA 237
               +++G +P D    +W        +F    + +               D+ LE    
Sbjct: 188 PTPEVKAGMLPFDACVKWWSDDRHMMTYFVTGKADELYYVTGVPVEKWDLNDRWLESSKE 247

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH 297
           E+++   G    + A + A +E T         L  R P   LW   SRG + + GDA H
Sbjct: 248 EMREAFSGWHPTVQALIDATVEVT------KWSLLERDPLP-LW---SRGRLVLLGDACH 297

Query: 298 PMTPDIGQGGCAALEDGIVLARCINE 323
           PM P + QG   A+EDG +LARC+ E
Sbjct: 298 PMKPHMAQGAAMAIEDGAMLARCLKE 323

Catalyzes the oxidative decarboxylation of 6-hydroxynicotinic acid to 2,5-dihydroxypyridine. Uses NADH in preference to NADPH as an electron donor.

Pseudomonas fluorescens (taxid: 294)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1

 Score = 89.7 bits (221), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 146/327 (44%), Gaps = 43/327 (13%)

Query: 17  LTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76
           L+ ++GL   GI   V E+ + ++  G A ++W N  K +  +G+G+ +      +  + 
Sbjct: 13  LSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIESYGGPMHFLA 72

Query: 77  ATPTISGKPSSERSL-----KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVS 131
               + G+  ++ SL     +  G+        ++R++L +   ++     +++  +V  
Sbjct: 73  YKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREML-DFWGRD----AVQFGKRVTR 127

Query: 132 IEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSH 191
            EE      +   DG++ +   LI  DG +S +        P  +G +  R Y+ +   +
Sbjct: 128 CEEHADGVRVWFTDGSMAEGDFLIAADGSHSAL-------RPYVLGYTPERRYAGYVNWN 180

Query: 192 GF-------EP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS---AEL 239
           G         P   +  F G+G R   +P  D   Y+FF     +     ED S   A+L
Sbjct: 181 GLVEIDEAIAPGNQWTTFVGEGKRVSLMPVSDGRFYFFFDVPLPA--GLAEDRSTLRADL 238

Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYR--QPQEVLWGNISRGSVCVAGDALH 297
            ++  G       QV+ +I    LD   ++R++    +P E     + RG V + GDA H
Sbjct: 239 SRYFSG----WAPQVQKLI--AALDPQTTNRIEIHDIEPFE----RLVRGKVALLGDAGH 288

Query: 298 PMTPDIGQGGCAALEDGIVLARCINEA 324
             TPDIGQGGCAALED +VL     E+
Sbjct: 289 STTPDIGQGGCAALEDAVVLGDLFRES 315

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 158/378 (41%), Gaps = 57/378 (15%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLRVTGF---AFTVWTNAWKALDAVGIG 62
           +++ G GI GL  +L   + G   +V E    ++R  G       + +NA  AL+A+ I 
Sbjct: 83  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDI- 141

Query: 63  NSLRQQHQQLRSIVA------TPTISGK---------PSSERSLKVQGKYGEHEMRCVRR 107
             + +Q  +   I           ISG          P++ R L V         R + R
Sbjct: 142 -EVAEQVMEAGCITGDRINGLVDGISGTWYVKFDTFTPAASRGLPV--------TRVISR 192

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW 167
             L + LA+ +    IR  S VV  E+SG    + L +G   +  +L+G DG+      W
Sbjct: 193 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGI------W 246

Query: 168 LGFKNPAFVGRS--AIRGYSDFKGSHGFEPNFLQFFGK----GLRSGFIPCD--DQTIYW 219
              +N  F GRS     GY+ + G   F P  ++  G     G +  F+  D     + W
Sbjct: 247 SKVRNNLF-GRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQW 305

Query: 220 FFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEV 279
           +       +     D    +K+ +          V  ++  T  ++I+   +  R P   
Sbjct: 306 Y---AFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEEAILRRDIYDRSPG-F 361

Query: 280 LWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEF 339
            WG   +G V + GD++H M P++GQGGC A+ED   LA  ++EA   KQ V    E   
Sbjct: 362 TWG---KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAW--KQSV----ETTT 412

Query: 340 NKRVEMGLKRYAKERRWR 357
              V   LKRY + RR R
Sbjct: 413 PVDVVSSLKRYEESRRLR 430

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, ABA-dependent stomatal closure, seed development and dormancy, modulation of defense gene expression and disease resistance and non-photochemical quencing (NPQ). Through its role in ABA biosynthesis, regulates the expression of stress-responsive genes such as RD29A during osmotic stress and is required for normal plant growth during vegetative development. Is required for late skotomorphogenic growth through its role in the xanthophyll carotenoids neoxanthin, violaxanthin and antheraxanthin biosynthesis. Required for beta-aminobutyric acid (BABA)-induced priming in disease resistance, tolerance to salt and drought stresses and sterility. Participates in NPQ by regulating the level of zeaxanthin in photosynthetic energy conversion. NPQ is a process that maintains the balance between dissipation and utilization of light energy to minimize the generation of oxidizing molecules and the molecular damages they can generate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 155/365 (42%), Gaps = 31/365 (8%)

Query: 5   EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
            +I+I GAGI GL+ +LGL R G+RS+VLE +  L   G    +  NA+ ALDA+GIG  
Sbjct: 3   NNILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIGEV 62

Query: 65  LRQQHQQLRSIVATPTISGK-----PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP 119
            RQ    +  ++    ++ K     P + R  +  G       R     LL+E   K   
Sbjct: 63  ARQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHK--- 119

Query: 120 SG--TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV-NSIVAKWLGFKNPAFV 176
           +G   +R +++VV  E         L DG+ +   VL+G DG+ +++  K +G  +P   
Sbjct: 120 TGLVEVRTNAEVVDYENFPDRVEAILHDGSCINGAVLVGADGLWSNVRQKVIGDGDPRVS 179

Query: 177 GRSAIRGYSDFKGSHGFEPNFLQ------FFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK 230
           G +  R     +      P  L+      + G+G      P     ++     TS+S   
Sbjct: 180 GHTTYRSVIPAEDM----PEELRWNMSTAWAGEGCHMVHYPLKGGKVF-NLVLTSNSGAS 234

Query: 231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVC 290
           E E         V  K   +  +  ++I K   ++     L  R P      N   G V 
Sbjct: 235 EPEAGVPVTTDEVFEKFKTMKRRPTSLIHKG--NNWKRWVLCDRDPLP----NWVDGRVT 288

Query: 291 VAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNK--RVEMGLK 348
           + GDA HPM   + QG   A+ED + LA  +   +     + + +   F +  RV+    
Sbjct: 289 LLGDAAHPMMQYMAQGASMAIEDAVCLAFELGREMDPVSALKKYNRARFARTARVQT-YS 347

Query: 349 RYAKE 353
           RYA +
Sbjct: 348 RYASD 352

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 153/375 (40%), Gaps = 51/375 (13%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLRVTG---FAFTVWTNAWKALDAVG-- 60
           +++ G GI GL  +L   + G   +V E    ++R  G       + +NA  AL+A+   
Sbjct: 88  VLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDLD 147

Query: 61  ----IGNSLRQQHQQLRSIVATPTISGK---------PSSERSLKVQGKYGEHEMRCVRR 107
               I N+     Q++  +V    ISG          P+ ER L V         R + R
Sbjct: 148 VAEDIMNAGCITGQRINGLVDG--ISGNWYCKFDTFTPAVERGLPV--------TRVISR 197

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-AK 166
             L + LA+ +    I   S VV  E+ G    + L +G      +L+G DG+ S V   
Sbjct: 198 MTLQQILARAVGEEIIMNESNVVDFEDDGEKVTVVLENGQRFTGDLLVGADGIRSKVRTN 257

Query: 167 WLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD--DQTIYWFFTWT 224
             G     + G +   G +DF  +      +  F G   +  F+  D     + W+  + 
Sbjct: 258 LFGPSEATYSGYTCYTGIADFVPADIDTVGYRVFLGH--KQYFVSSDVGGGKMQWYAFYN 315

Query: 225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNI 284
             +   +  +   E    + G   D    V  ++  T  D+I+  R  Y +P    WG  
Sbjct: 316 EPAGGADAPNGKKERLLKIFGGWCD---NVIDLLVATDEDAILR-RDIYDRPPTFSWG-- 369

Query: 285 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVE 344
            RG V + GD++H M P++GQGGC A+ED   LA  + +A             EF   V+
Sbjct: 370 -RGRVTLLGDSVHAMQPNLGQGGCMAIEDSYQLALELEKACSRSA--------EFGSPVD 420

Query: 345 M--GLKRYAKERRWR 357
           +   L+ Y   R+ R
Sbjct: 421 IISSLRSYESARKLR 435

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 143/343 (41%), Gaps = 45/343 (13%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLRVTG---FAFTVWTNAWKALDAVG-- 60
           +++ G GI GL  +L   + G   +V E    ++R  G       + +NA  AL+A+   
Sbjct: 82  VLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDMD 141

Query: 61  ----IGNSLRQQHQQLRSIVATPTISGK---------PSSERSLKVQGKYGEHEMRCVRR 107
               I N+     Q++  +V    +SG          P+ ER L V         R + R
Sbjct: 142 VAEDIMNAGCITGQRINGLVDG--VSGNWYCKFDTFTPAVERGLPV--------TRVISR 191

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-AK 166
             L + LA+ +    I   S VV+ E+ G    + L DG      +L+G DG+ S V   
Sbjct: 192 MTLQQNLARAVGEDIIMNESNVVNFEDDGEKVTVTLEDGQQYTGDLLVGADGIRSKVRTN 251

Query: 167 WLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD----DQTIYWFFT 222
             G  +  + G +   G +DF  +      +  F G   +  F+  D        Y F  
Sbjct: 252 LFGPSDVTYSGYTCYTGIADFVPADIETVGYRVFLGH--KQYFVSSDVGGGKMQWYAFHN 309

Query: 223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWG 282
             +   D      +  LK F           V  ++  T  D+I+  R  Y +P    WG
Sbjct: 310 EPAGGVDDPNGKKARLLKIF-----EGWCDNVIDLLVATDEDAILR-RDIYDRPPTFSWG 363

Query: 283 NISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEAL 325
              +G V + GD++H M P++GQGGC A+ED   LA  +++AL
Sbjct: 364 ---KGRVTLLGDSVHAMQPNLGQGGCMAIEDSYQLALELDKAL 403

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 130/322 (40%), Gaps = 35/322 (10%)

Query: 19  TSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT 78
           T+L L R GI+ M+LE +  +   G    +  NA+ ALD++G+G   RQ+      I   
Sbjct: 19  TALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGVGEVARQRAVFTDHITMM 78

Query: 79  PTISGKPSSERSLKVQGKYGEH---EMRCVRRKLLLETL---AKELPSGTIRYSSQVVSI 132
             ++G+      ++    + +H       + R  +  T+   A   P+   R S+QVV I
Sbjct: 79  DAVNGEEVVH--IETGQAFRDHFGGPYAVIHRVDIHATVWEAALTHPAVEYRTSTQVVDI 136

Query: 133 EESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHG 192
            ++     +    G      +LIGCDG  S+V + L   +P   G    R   D      
Sbjct: 137 RQTADDVTVFDDKGNSWTADILIGCDGGKSVVRQSLLGDSPRVTGHVVYRAVVDAADM-- 194

Query: 193 FEPNFLQFFGKGLRSG------FIPCDDQTIYWFFTWTSSSQDKE--LEDHSAELKQFVL 244
             P+ L+     L +G        P      Y       S Q +E  + D S E      
Sbjct: 195 --PDDLRINAPVLWAGPHCHLVHYPLRGGKQYNLVVTFHSRQQEEWGVRDGSKEEVLSYF 252

Query: 245 GKLHDLPAQVKAVIEKTPLDSIISSR---LQYRQPQEVLWGNISRGSVCVAGDALHPMTP 301
             +H  P Q+        LD   S R      R+P E  WGN     + + GDA HP+  
Sbjct: 253 KGIHPRPRQM--------LDKPTSWRRWSTADREPVE-KWGN---DRITLVGDAAHPVAQ 300

Query: 302 DIGQGGCAALEDGIVLARCINE 323
            + QG C ALED + L + + +
Sbjct: 301 YMAQGACMALEDAVTLGKALAQ 322

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 159/389 (40%), Gaps = 57/389 (14%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES-LRVTG---FAFTVWTNAWKALDAVGIG 62
           +++ G GI GL  +L   R G    V E   S +R  G       + +NA  AL+A+ + 
Sbjct: 80  VLVAGGGIGGLVLALAARRKGYEVTVFERDMSAVRGEGQYRGPIQIQSNALAALEAIDMS 139

Query: 63  NS---LRQ---QHQQLRSIVATPTISGK---------PSSERSLKVQGKYGEHEMRCVRR 107
            +   +R+      ++  +V    ISG          P++ER L V         R + R
Sbjct: 140 VAEEVMREGCVTGDRINGLVDG--ISGSWYIKFDTFTPAAERGLPV--------TRVISR 189

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW 167
             L + LA+ +    I   S VV   + G+     L DG   +  +L+G DG+ S V K 
Sbjct: 190 MTLQQILARAVGDDAILNDSHVVDFIDDGNKVTAILEDGRKFEGDLLVGADGIWSKVRKV 249

Query: 168 LGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGK----GLRSGFIPCD----DQTIYW 219
           L  ++ A         Y+ + G   F P  +   G     G +  F+  D        Y 
Sbjct: 250 LFGQSEATYSE-----YTCYTGIADFVPPDIDTVGYRVFLGHKQYFVSSDVGAGKMQWYA 304

Query: 220 FFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEV 279
           F    +   D E    +  L +   G   ++   + A  E+      I  R  Y +P   
Sbjct: 305 FHKEPAGGTDPE-NGKNKRLLEIFNGWCDNVVDLINATDEEA-----ILRRDIYDRPPTF 358

Query: 280 LWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEF 339
            WG   +G V + GD++H M P++GQGGC A+EDG  LA  + ++ +     G   +   
Sbjct: 359 NWG---KGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKSWQESAKSGTPMD--- 412

Query: 340 NKRVEMGLKRYAKERRWRCFELISIAYLV 368
              +   L+RY KER  R   +  +A + 
Sbjct: 413 ---IVSSLRRYEKERILRVSVIHGLARMA 438

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, seed development and dormancy.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
224147350	405	predicted protein [Populus trichocarpa]	0.980	0.990	0.701	1e-157
224080640	405	predicted protein [Populus trichocarpa]	0.980	0.990	0.699	1e-156
359475016	409	PREDICTED: LOW QUALITY PROTEIN: 3-hydrox	0.992	0.992	0.656	1e-156
388492786	416	unknown [Lotus japonicus]	0.997	0.980	0.619	1e-147
356575446	412	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.995	0.987	0.616	1e-145
449507022	409	PREDICTED: FAD-dependent urate hydroxyla	0.992	0.992	0.613	1e-144
356536384	412	PREDICTED: 6-hydroxynicotinate 3-monooxy	0.992	0.985	0.613	1e-144
449454358	409	PREDICTED: FAD-dependent urate hydroxyla	0.992	0.992	0.608	1e-143
449454225	482	PREDICTED: FAD-dependent urate hydroxyla	0.992	0.842	0.603	1e-140
356534423	418	PREDICTED: zeaxanthin epoxidase, chlorop	0.995	0.973	0.562	1e-135

>gi|224147350|ref|XP_002336457.1| predicted protein [Populus trichocarpa] gi|222835068|gb|EEE73517.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/409 (70%), Positives = 331/409 (80%), Gaps = 8/409 (1%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           ME VE++VIVGAGIAGLTTSLGL+RLGIRS+VLESS  LRVTGFAFT WTNAW+ALDAVG
Sbjct: 1   MELVEEVVIVGAGIAGLTTSLGLHRLGIRSLVLESSAGLRVTGFAFTTWTNAWRALDAVG 60

Query: 61  IGNSLRQQHQQLRSIVATPTIS-GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP 119
           IG+SLRQQH  L   + +   S   P S  +      +G+HE+RCVRRKLLLE L KELP
Sbjct: 61  IGHSLRQQHGFLEGYITSRLTSCHHPISLVT------FGDHEVRCVRRKLLLEALEKELP 114

Query: 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS 179
            GTIRYSS+VVSIEESG+ KL+HLAD TI+KTKVLIGCDGVNS+VA+++GFK PAF GRS
Sbjct: 115 DGTIRYSSKVVSIEESGYLKLVHLADDTIIKTKVLIGCDGVNSVVARFIGFKKPAFAGRS 174

Query: 180 AIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAEL 239
           AIRGY+DFK +HGF   FL  FGKG+RSGF+PCDD TIYWFFT+  + QDKELED+  E+
Sbjct: 175 AIRGYADFKVNHGFGSKFLLLFGKGVRSGFLPCDDTTIYWFFTYIPTGQDKELEDNPTEM 234

Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
           KQFVL KL ++P   +  +E T LDSI SS L++R P EVLWGNIS+G+V VAGDALHPM
Sbjct: 235 KQFVLSKLGNVPDHARTSVEITELDSITSSPLRFRHPWEVLWGNISKGNVSVAGDALHPM 294

Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGV-GEEDEEEFNKRVEMGLKRYAKERRWRC 358
           TPDIGQGGCAALEDG+VLARC+ EALK +  V G+E E E  KRVEMGLK+YA ERRWR 
Sbjct: 295 TPDIGQGGCAALEDGVVLARCLAEALKKELNVEGKEKEREEYKRVEMGLKKYAAERRWRS 354

Query: 359 FELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT 407
           FELIS AY+VG+IQQ DGKI+N LRD  LA FL GLLLKKADFDCG L 
Sbjct: 355 FELISTAYIVGAIQQGDGKIMNILRDAFLAKFLAGLLLKKADFDCGKLN 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080640|ref|XP_002306191.1| predicted protein [Populus trichocarpa] gi|222849155|gb|EEE86702.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/409 (69%), Positives = 331/409 (80%), Gaps = 8/409 (1%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           ME VE++VIVGAGIAGLTTSLGL+RLGIRS+VLESS  LRVTGFAFT WTNAW+ALDAVG
Sbjct: 1   MELVEEVVIVGAGIAGLTTSLGLHRLGIRSLVLESSAGLRVTGFAFTTWTNAWRALDAVG 60

Query: 61  IGNSLRQQHQQLRSIVATPTIS-GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP 119
           IG+SLRQQH  L   + +   S   P S  +      +G+HE+RCVRRKLLLE L KELP
Sbjct: 61  IGHSLRQQHGFLEGYITSRLTSCHHPISLVT------FGDHEVRCVRRKLLLEALEKELP 114

Query: 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS 179
            GTIRYSS+VVSIEESG+ KL+HLAD TI+KTKVLIGCDGVNS+VA+++GFK PAF GRS
Sbjct: 115 DGTIRYSSKVVSIEESGYLKLVHLADDTIIKTKVLIGCDGVNSVVARFIGFKKPAFAGRS 174

Query: 180 AIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAEL 239
           AIRGY+DFK +HGF   FL  FGKG+RSGF+PCDD TIYWFFT+  + QDKELED+  E+
Sbjct: 175 AIRGYADFKVNHGFGSKFLLLFGKGVRSGFLPCDDTTIYWFFTYIPTGQDKELEDNPTEM 234

Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
           KQFVL KL ++P   +  +E T LDSI SS L++R P EVLWGNIS+G+V VAGDALHPM
Sbjct: 235 KQFVLSKLGNVPDHARTSVEITELDSITSSPLRFRHPWEVLWGNISKGNVSVAGDALHPM 294

Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGV-GEEDEEEFNKRVEMGLKRYAKERRWRC 358
           TPDIGQGGCAALEDG+VLARC+ EALK +  V G+E E E  KRVEMGLK+YA ERRWR 
Sbjct: 295 TPDIGQGGCAALEDGVVLARCLAEALKKELNVEGKEKEREEYKRVEMGLKKYAAERRWRS 354

Query: 359 FELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT 407
           FELIS AY+VG+IQQ DGKI+  LRD I+A FL GLLLKKADFDCG L 
Sbjct: 355 FELISTAYIVGAIQQGDGKIMKILRDAIMAKFLAGLLLKKADFDCGKLN 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475016|ref|XP_003631569.1| PREDICTED: LOW QUALITY PROTEIN: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/408 (65%), Positives = 337/408 (82%), Gaps = 2/408 (0%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           M++VEDIVIVGAGIAGLTT+LGL+RLG+RS+VLESS SLRVTGFAF  WTNAW+ALDA+G
Sbjct: 1   MDAVEDIVIVGAGIAGLTTALGLHRLGLRSLVLESSHSLRVTGFAFITWTNAWRALDAIG 60

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           +G+ LRQ H QL  + +  T+SG  +SE S K +GK GEH++RC++RK+LLE L KELP+
Sbjct: 61  VGDYLRQHHNQLYGLQSASTVSGLQTSEISFKAKGKNGEHDIRCLQRKVLLEALLKELPN 120

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
           GTIRYSS+VVS+EESG+ KL+HLADG+ILKTKVLIGCDGVNS+VAKW G K PAF  R A
Sbjct: 121 GTIRYSSKVVSVEESGYLKLVHLADGSILKTKVLIGCDGVNSMVAKWXGLKKPAFTRRYA 180

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
            R Y+ FK  HGFEP FLQFFGKG+RSGFIPCDD+T+YWF  +T SSQ+K++E+  A++K
Sbjct: 181 FRAYAYFKSGHGFEPKFLQFFGKGVRSGFIPCDDKTVYWFMAFTPSSQEKQMENDPAKMK 240

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           QF L  L ++P QVKAV+E T +DSI  +++++R P E+LWGNIS+ +VCVAGDALHPMT
Sbjct: 241 QFALSNLGNVPDQVKAVVESTEMDSISLAQMRFRYPWELLWGNISKDNVCVAGDALHPMT 300

Query: 301 PDIGQGGCAALEDGIVLARCINEALK-TKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCF 359
           PD+GQG C+ALED +VLARC+ EAL    +   EE EEE  KR++MGL++YAKERR+R  
Sbjct: 301 PDLGQGACSALEDTVVLARCLAEALSKKPKNKAEEKEEEEFKRIKMGLEKYAKERRYRGI 360

Query: 360 ELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT 407
           +LI+ +YLVG IQQSDGK+LNF+RDKI ++ L G+ LKKADFDCG L+
Sbjct: 361 DLITSSYLVGFIQQSDGKMLNFIRDKI-SALLAGVPLKKADFDCGKLS 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492786|gb|AFK34459.1| unknown [Lotus japonicus]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/413 (61%), Positives = 323/413 (78%), Gaps = 5/413 (1%)

Query: 2   ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGI 61
           + VEDI+IVGAGIAGLTTSLGL+RLG+RS+VLESS++LR TGFA   W NAWKAL+AVG+
Sbjct: 4   QVVEDILIVGAGIAGLTTSLGLHRLGVRSLVLESSDTLRATGFALATWKNAWKALEAVGV 63

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
           G  LR +H Q+  I  T  I+G+P+S  S K  GK+G  E+RCVRRKL+LE LA ELPSG
Sbjct: 64  GTILRDRHLQVNGITITSLITGQPTSTVSFKDNGKHGSCEVRCVRRKLMLEALANELPSG 123

Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
           TIRY S+VV+IEESG +K+LHLADGTI+KTKVLIGCDGVNS+VAKWLGFK  +F GR AI
Sbjct: 124 TIRYLSKVVAIEESGFYKILHLADGTIIKTKVLIGCDGVNSMVAKWLGFKEASFTGRQAI 183

Query: 182 RGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA---- 237
           RG  + + +HGF+P   QFFG+G R+G +PCD +TIYWFFTWT ++Q +ELE++ A    
Sbjct: 184 RGCVELESNHGFDPMLKQFFGQGFRAGVVPCDQETIYWFFTWTPTTQGEELEENPAKLKT 243

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH 297
           +LKQFVL KL  +P+ V+  IEKT LD   S+ L+YRQP E++ GNIS+G+VCVAGDALH
Sbjct: 244 KLKQFVLNKLEKMPSDVRCFIEKTELDCFHSAPLRYRQPWELMLGNISKGNVCVAGDALH 303

Query: 298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFN-KRVEMGLKRYAKERRW 356
           PMTPD+GQGGC ALEDG+VLARC+ +A   K    + +E+E   KR+E  LK+YA ER+W
Sbjct: 304 PMTPDLGQGGCCALEDGVVLARCLAKAFSEKSKEKKGEEDEEQYKRIEESLKKYADERKW 363

Query: 357 RCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
           R  +LIS AY+ G +QQ++ K + FLRDK+LA FL  +LLKKA+FDCG L S+
Sbjct: 364 RSIDLISTAYMAGFVQQANSKWVTFLRDKVLAIFLADILLKKANFDCGTLNSS 416

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575446|ref|XP_003555852.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/409 (61%), Positives = 326/409 (79%), Gaps = 2/409 (0%)

Query: 2   ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGI 61
           E VEDIVIVGAGIAGL+TSLGL+RLGIRS+VLESS+SLR+TGFA ++W NAWKALDAVG+
Sbjct: 5   EVVEDIVIVGAGIAGLSTSLGLHRLGIRSLVLESSDSLRITGFALSIWENAWKALDAVGV 64

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKELPS 120
           G+ LRQQH QL  +V T  ++G+ +S  S    G +  + E+RCV+RKLLLE LA ELPS
Sbjct: 65  GDFLRQQHPQLNRVVTTSLVTGQQTSVMSFTETGNQQRDREIRCVKRKLLLEALANELPS 124

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
           GTIRY S+VV++EESG +K+LHLADGT +KTKVLIGCDGVNS+VAKWLGFKN +F GR +
Sbjct: 125 GTIRYLSKVVALEESGFYKILHLADGTTIKTKVLIGCDGVNSVVAKWLGFKNASFTGRYS 184

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
           IRG ++ + +HG EP  +QFFGKG R+G IPCD++ +YWFFTWT  S DKEL+D+ A+LK
Sbjct: 185 IRGCAEVQSNHGLEPRTMQFFGKGFRAGVIPCDEKAVYWFFTWTPKSHDKELDDNPAKLK 244

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           ++VL KL  +P+ ++  IEKT LD I+   L+YR P E+++GNIS+G+VCV GDALHPMT
Sbjct: 245 EYVLNKLEKMPSDIRYYIEKTELDVILLVPLRYRHPWELMFGNISKGNVCVGGDALHPMT 304

Query: 301 PDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFE 360
           PD+GQGGC ALEDG+VLAR + EA        +E++++F KR+E  LK+YAKERRWR  +
Sbjct: 305 PDLGQGGCCALEDGVVLARFLGEAFSKHIKEKDEEDDQF-KRIEESLKKYAKERRWRSID 363

Query: 361 LISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
           +I+ AY+VGSIQQ++ K++ FLRD ILA+FL    LKK+ +DCG L S+
Sbjct: 364 VIATAYMVGSIQQAESKLVTFLRDNILAAFLASQYLKKSGYDCGKLNSS 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507022|ref|XP_004162912.1| PREDICTED: FAD-dependent urate hydroxylase-like [Cucumis sativus]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/411 (61%), Positives = 313/411 (76%), Gaps = 5/411 (1%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           ME+V D++IVGAGI+GLTT+LGL+RLGIRS+VLESS+ LRVTG+A ++WTN WKALDAVG
Sbjct: 1   MENVVDVLIVGAGISGLTTALGLHRLGIRSLVLESSDDLRVTGYALSLWTNGWKALDAVG 60

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           IG+SLRQ H QL  I+ T  ISG  +SE       + G   +RCVRRK LLE LAK LPS
Sbjct: 61  IGDSLRQNHDQLDGIITTSMISGDKTSELLFPAPEEGG---VRCVRRKFLLECLAKALPS 117

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
           GTI++SS+VV+IEESG  KL+HL DGT +KTKVLIGCDGV S+VAKWLGFK PAF GR A
Sbjct: 118 GTIKFSSKVVAIEESGLLKLVHLVDGTSIKTKVLIGCDGVKSVVAKWLGFKAPAFTGRCA 177

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
           +RG      +H FE    Q+ G+G+R+G IPCDD+T+YWFFTWT S++ KE++ +  +LK
Sbjct: 178 VRGCLQLDSNHYFERKMSQYAGEGVRAGIIPCDDKTLYWFFTWTPSAEVKEMKRNPVKLK 237

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           Q VL  L ++P   + VIE+T +     + LQYR P E++ GNI +G+VCVAGDALHPMT
Sbjct: 238 QLVLSMLGEIPEAARVVIEETDVSCFQPAALQYRSPWELMLGNIVKGNVCVAGDALHPMT 297

Query: 301 PDIGQGGCAALEDGIVLARCINEAL--KTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRC 358
           PD+GQGGCAALEDG++LARC+ EAL  K    VGE+ E E  K+VEMGLK+YA ER+WR 
Sbjct: 298 PDLGQGGCAALEDGVILARCVAEALLKKPSSQVGEKAEREQQKQVEMGLKKYAAERKWRS 357

Query: 359 FELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
            ELIS AY+VG +QQS G    F+RDKIL+ FLVGLLL+ A FDCG LT +
Sbjct: 358 IELISTAYMVGRMQQSSGVFAKFIRDKILSKFLVGLLLRNAKFDCGKLTPS 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536384|ref|XP_003536718.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/409 (61%), Positives = 323/409 (78%), Gaps = 3/409 (0%)

Query: 2   ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGI 61
           E VEDIVIVGAGIAGLTTSLGL++LGIRS+VLESS++LRVTGFA ++W NAWKALD VG+
Sbjct: 4   EVVEDIVIVGAGIAGLTTSLGLHKLGIRSLVLESSDTLRVTGFALSIWENAWKALDTVGV 63

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEH-EMRCVRRKLLLETLAKELPS 120
           G+ LR QH QL  IV T  ++G+ +S+      G    + E+RCV+RKLLLE LA ELPS
Sbjct: 64  GDFLRHQHLQLNGIVTTSLVTGQQTSDMPFTETGNQQRNREIRCVKRKLLLEALANELPS 123

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
            TIRY S+VV+IEESG +K++HLADGT +KTKVLIGCDGVNSIVAKWLGFKN +F GR A
Sbjct: 124 DTIRYLSKVVAIEESGFYKIVHLADGTTIKTKVLIGCDGVNSIVAKWLGFKNASFTGRYA 183

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
           IRG ++ + +HG EP F+QFFGKG R+G IPCD   +YWFFTWT ++QDKELE++ A+LK
Sbjct: 184 IRGCAEVQSNHGLEPRFMQFFGKGFRAGVIPCDGNVVYWFFTWTPNNQDKELEENPAKLK 243

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           + VL KL ++P+ V+  IEKT +D+   + L+YR P E+++GNIS+G++CV GDA HPMT
Sbjct: 244 EHVLNKLENMPSDVRYYIEKTEIDAFQLAPLRYRHPWELMFGNISKGNICVGGDAFHPMT 303

Query: 301 PDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFE 360
           PD+GQGGC ALEDGIVLARC+  A    + + E+DEE+  KR+E  LK+YAKERRWR  +
Sbjct: 304 PDLGQGGCCALEDGIVLARCLAAAF--SKHIKEKDEEDQFKRIEGSLKKYAKERRWRSID 361

Query: 361 LISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
           +I+ AY+VGSIQQ++ K++ FLRD ILA+FL   L KK+ +DCG L ++
Sbjct: 362 VIATAYMVGSIQQAESKLVTFLRDNILAAFLASQLFKKSGYDCGKLNNS 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454358|ref|XP_004144922.1| PREDICTED: FAD-dependent urate hydroxylase-like [Cucumis sativus]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/411 (60%), Positives = 311/411 (75%), Gaps = 5/411 (1%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           ME+V D++IVGAGI+GLTT+LGL+RLGIRS+VLESS+ LRVTG+A ++WTN WKALDAVG
Sbjct: 1   MENVVDVLIVGAGISGLTTALGLHRLGIRSLVLESSDDLRVTGYALSLWTNGWKALDAVG 60

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           IG+SLRQ H QL  I+ T  ISG  +SE       + G   +RCVRRK LLE LAK LPS
Sbjct: 61  IGDSLRQNHDQLDGIITTSMISGDKTSELLFPAPEEGG---VRCVRRKFLLECLAKALPS 117

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
           GTI++SS+VV+IEESG  KL+HL DGT +KTKVLIGCDGV S+VAKWLGFK PAF GR A
Sbjct: 118 GTIKFSSKVVAIEESGLLKLVHLVDGTSIKTKVLIGCDGVKSVVAKWLGFKAPAFTGRCA 177

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
           +RG      +H FE    Q+ G+G+R+G IPCD +T+YWFFTWT S++ KE++ +  +LK
Sbjct: 178 VRGCLQLDSNHYFERKMSQYAGEGVRAGIIPCDYKTLYWFFTWTPSAEVKEMKRNPVKLK 237

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           Q VL  L ++P   + VIE+T +     + LQYR P E++ GNI +G+VCVAGDALHPMT
Sbjct: 238 QLVLSMLGEIPEAARVVIEETDVSCFQPAALQYRSPWELMLGNIVKGNVCVAGDALHPMT 297

Query: 301 PDIGQGGCAALEDGIVLARCINEAL--KTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRC 358
           PD+GQGGCAALEDG++LARC+ EAL  K     GE+ E E  K+VEMGLK+YA ER+WR 
Sbjct: 298 PDLGQGGCAALEDGVILARCVAEALLKKPSSQEGEKAEREQQKQVEMGLKKYAAERKWRS 357

Query: 359 FELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
            ELIS AY+VG +QQS G    F+RDKIL+ FLVGLLL+ A FDCG LT +
Sbjct: 358 IELISTAYMVGRMQQSSGVFAKFIRDKILSKFLVGLLLRNAKFDCGKLTPS 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454225|ref|XP_004144856.1| PREDICTED: FAD-dependent urate hydroxylase-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/411 (60%), Positives = 306/411 (74%), Gaps = 5/411 (1%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           ME V DI+IVGAGI GLTT+LGL+RLGIRS+VLESS+ LRVTG+A ++WTN WKALDAVG
Sbjct: 74  MEIVVDILIVGAGICGLTTALGLHRLGIRSLVLESSDDLRVTGYALSIWTNGWKALDAVG 133

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           IG+SLRQ H QL  ++ T  ISG  +SE       + G   +RCVRRK LLE LAK LPS
Sbjct: 134 IGDSLRQNHDQLDGVITTSIISGDKTSELLFPAPEEGG---VRCVRRKFLLECLAKALPS 190

Query: 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
           GTI++SS+VV+IEESG  KL+HLADGT +KTKVLIGCDGV S+VAKWLGFK  AF GR A
Sbjct: 191 GTIKFSSKVVAIEESGLLKLVHLADGTSIKTKVLIGCDGVKSVVAKWLGFKALAFTGRCA 250

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240
           +RG    + +H FE     + G+G+R+G IPCD +T+YWFF+WT S+  KE++ +  +LK
Sbjct: 251 VRGCLQLESNHNFERKVRLYAGEGVRAGIIPCDYKTLYWFFSWTPSADVKEMKRNPVKLK 310

Query: 241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300
           Q +L  L ++P   +AVIE+T +       LQYR P E++ GNI +G+VCVAGDALHPMT
Sbjct: 311 QLLLSMLGEIPEAARAVIEETDVSCFHPVALQYRSPWELMLGNIVKGNVCVAGDALHPMT 370

Query: 301 PDIGQGGCAALEDGIVLARCINEAL--KTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRC 358
           PD+GQGGCAALEDG++LARC+ EAL  K     GE+ E E  K+VEMGLK+YA ER+WR 
Sbjct: 371 PDLGQGGCAALEDGVILARCVAEALLKKPSSQEGEKAEREQQKQVEMGLKKYAAERKWRS 430

Query: 359 FELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLTST 409
            ELI  AY+VG IQQS G    F+RDKIL+ FL GLLLK A FDCG LT +
Sbjct: 431 IELIGTAYMVGKIQQSSGVFAKFIRDKILSKFLAGLLLKNAKFDCGKLTPS 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534423|ref|XP_003535754.1| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/418 (56%), Positives = 306/418 (73%), Gaps = 11/418 (2%)

Query: 1   MES--VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDA 58
           MES  VEDIVIVGAGIAGL TSL L+RLG+ S+VLE S++LRVTGFA T WTNAWKALDA
Sbjct: 1   MESSLVEDIVIVGAGIAGLATSLALHRLGVPSLVLEYSDTLRVTGFALTTWTNAWKALDA 60

Query: 59  VGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
           +G+G  LR QH QL+  V T  I G+ +S  S +  GK+G+ E+RCVRR+L+LE +A EL
Sbjct: 61  LGVGTILRHQHVQLKENVTTSLILGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANEL 120

Query: 119 PSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
           PSGTIR+ S+VV+IEESG    K++ L DGT +KTKVLIGCDG+NS+VAKWLGFK  +F 
Sbjct: 121 PSGTIRFLSKVVAIEESGFSKIKIVRLDDGTTIKTKVLIGCDGINSVVAKWLGFKEASFT 180

Query: 177 GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
           GR  IRGY     +HG EP F+ +FGKG RSG +PCDD T+YWF TWT +S++KEL  + 
Sbjct: 181 GRYVIRGYKKLMNNHGLEPKFMHYFGKGFRSGVMPCDDNTVYWFLTWTPTSEEKELAKNP 240

Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
           +++KQ VL K+  +P+ +K  IEKT    I++S L+YR   E++ G IS+G+VCV GDA 
Sbjct: 241 SKMKQLVLRKVEKMPSDIKTFIEKTETKDILTSPLKYRHEWELMLGKISKGNVCVVGDAF 300

Query: 297 HPMTPDIGQGGCAALEDGIVLARCINEALKTKQG------VGEEDE-EEFNKRVEMGLKR 349
           HPM PD+GQGGC ALEDGI+LAR + EA   K G      +GEE + +E  K++E  L++
Sbjct: 301 HPMAPDLGQGGCCALEDGIILARHLAEAFTKKTGKHVAKEMGEEGKSKEQYKKIEASLRK 360

Query: 350 YAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT 407
           YAKERRWR  ++   +Y++G + Q D K+++  RDK+  +FL  LLLKK+DFDCG L 
Sbjct: 361 YAKERRWRNIDISVTSYVLGFVLQGDLKLVSHFRDKLFPAFLAELLLKKSDFDCGKLN 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.977	0.982	0.594	8.7e-127
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.977	0.985	0.562	1.3e-121
TAIR|locus:2058723	439	CTF2A "AT2G35660" [Arabidopsis	0.929	0.865	0.381	3.7e-64
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.904	0.866	0.388	3.3e-63
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.960	0.931	0.363	3.5e-59
TAIR|locus:504955430	271	AT4G15765 "AT4G15765" [Arabido	0.594	0.896	0.288	2.4e-37
UNIPROTKB|A6T923	384	hpxO "FAD-dependent urate hydr	0.899	0.958	0.256	9.1e-23
UNIPROTKB|B6D1N4	384	hpxO "FAD-dependent urate hydr	0.899	0.958	0.256	1.3e-22
UNIPROTKB|B5B0J6	384	hpxO "FAD-dependent urate hydr	0.814	0.867	0.265	2e-20
UNIPROTKB|P86491	385	P86491 "6-hydroxynicotinate 3-	0.735	0.781	0.282	9.5e-20

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 242/407 (59%), Positives = 307/407 (75%)

Query:     2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGI 61
             E   DI+IVGAGI+GL+T++GL+RLGIRSMVLESSE+LR TGFAFT W NAWKA++A+G+
Sbjct:     4 EGSPDIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEALGV 63

Query:    62 GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
                +R  H +L   V     +G P +E  L  + +  E+E RCV+RKLLLE LA ELP  
Sbjct:    64 SQHIRSLHDRLEGWVVGTISAGTPPTEM-LFPESE--EYESRCVQRKLLLEALAGELPEE 120

Query:   122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
             TIR+SS+VV IE SG +K +HL+DGTILKTKVL+GCDGV S+V KWLGFKNPA   R AI
Sbjct:   121 TIRFSSKVVHIELSGCYKKVHLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPATTARLAI 180

Query:   182 RGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQ 241
             RG + F   HGF   F QF+G G+RSGFIPCD  T+YWF T TS+  D+E   +S  LK+
Sbjct:   181 RGLTHFPEGHGFGKRFFQFYGDGVRSGFIPCDHNTVYWFLTHTSTDIDEET--NSEILKE 238

Query:   242 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 301
             FVL K+ DLP  +K V+E T LDS++ S+L+YR P E+LW NI++ +VCVAGDALHPMTP
Sbjct:   239 FVLNKIKDLPENIKNVVETTDLDSMVMSQLKYRPPWELLWSNITKDNVCVAGDALHPMTP 298

Query:   302 DIGQGGCAALEDGIVLARCINEALKTK--QGVGEEDEEEFNKRVEMGLKRYAKERRWRCF 359
             DIGQGGC+A+EDG++LARC+ EA+K K  +G  EE+EEE  KR+E GLK+YA ER+WR  
Sbjct:   299 DIGQGGCSAMEDGVILARCLGEAIKAKSLKGETEENEEEGYKRIEEGLKKYAGERKWRSI 358

Query:   360 ELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNL 406
             +LI+ AY VG IQQS GK +N  RD+ L+S+L  +LLKK+ FDCG+L
Sbjct:   359 DLITTAYTVGFIQQSRGKWMNMFRDRFLSSYLSRMLLKKSHFDCGSL 405

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 229/407 (56%), Positives = 302/407 (74%)

Query:     2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGI 61
             ES +DI+IVGAGI+GL T+LGL+RLGIRS+VLESSE LR TGFA +++ NAWKA++A+GI
Sbjct:     4 ESTQDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGI 63

Query:    62 GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
                +R    + +  V  P  +G P  E  L  + +  E+E+RCV+RKLLL+ LA ELP G
Sbjct:    64 SQHIRSLGDRFQGWVVRPISAGDPPKEM-LFPESE--EYEVRCVQRKLLLDALAGELPQG 120

Query:   122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
             TIR+SS++V IE SGH+K++HL+DGTILKTKVL+GCDGV S+V KWLGFKNP    R AI
Sbjct:   121 TIRFSSKLVHIELSGHYKMVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRVAI 180

Query:   182 RGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQ 241
             RG + F+  H     F QF+G G+RSGFI CD  T+YWF T TS+  DK+  +H  ++KQ
Sbjct:   181 RGIAHFQTGHELGRRFFQFYGNGVRSGFISCDQNTVYWFLTHTSTDLDKK--NHQ-KIKQ 237

Query:   242 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 301
             FVL K+ DLP  +K+++E T LDS++ + L YR P E+LW NI++ +VCVAGDALHPMTP
Sbjct:   238 FVLTKIKDLPDNIKSILETTDLDSLVMNPLMYRPPWELLWANIAKDNVCVAGDALHPMTP 297

Query:   302 DIGQGGCAALEDGIVLARCINEALKTKQGVGE-EDEEEFNKRVEMGLKRYAKERRWRCFE 360
             DIGQGGC+A+EDG++LARC+ EA+K K   GE EDE E  +R+E GLK+YA  R+WR  +
Sbjct:   298 DIGQGGCSAMEDGVILARCLGEAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKWRSID 357

Query:   361 LISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNLT 407
             LI+ +Y VG IQQS GK +   RDK ++SFL  L +KK+ F+CG L+
Sbjct:   358 LITTSYTVGFIQQSRGKWMTLFRDKFMSSFLSWLRVKKSHFNCGRLS 404

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 155/406 (38%), Positives = 232/406 (57%)

Query:     5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
             E +VIVGAGI GL T++ L+RLGIRS+VLE +ESLR  G + T++ N W+ LDA+ +G  
Sbjct:    45 EKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQ 104

Query:    65 LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIR 124
             LR Q  ++  +V      G+    RS K +      E+R V R++LLETLA +LP  TIR
Sbjct:   105 LRTQFLEIEGMVVKKE-DGREL--RSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIR 161

Query:   125 YSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRG 183
             +SS++ SI+ + +   LL L DGT L  +++IGCDG+ S VA W+GF  P +VG  A RG
Sbjct:   162 FSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRG 221

Query:   184 YSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFV 243
                +     F+      +GKG+R+G++P     +YWF  + S S   ++ D  A LK+  
Sbjct:   222 LGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFICFNSPSLGPKITD-PAILKKQA 280

Query:   244 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNI----SRGSVCVAGDALHPM 299
                +   P  ++ +I+ TP ++I  + L  R     LW  I    S+G V + GDA HPM
Sbjct:   281 KELVSTWPEDLQNLIDLTPDETISRTPLVDRW----LWPGIAPPASKGRVVLVGDAWHPM 336

Query:   300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCF 359
             TP++GQG C ALED +VLA  +  A+    G G E        +E+ ++ Y  ER  R F
Sbjct:   337 TPNLGQGACCALEDSVVLANKLANAIN---G-GTES-------IEVAMESYGSERWSRAF 385

Query:   360 ELISIAYLVGSIQQSDGKILNFLRDKILASFLV--GLLLKKADFDC 403
              L   A LVG++ Q +  ++  +R+ I+   L+  G +L+  +F+C
Sbjct:   386 PLTVRANLVGALLQWENPLVCSIRNNIVIPKLLRLGPMLEHTNFEC 431

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 150/386 (38%), Positives = 222/386 (57%)

Query:     5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
             E +VIVG GI GL T++ L+RLGIRS+VLE +ESLR  G + T+  N W+ LDA+ IG  
Sbjct:    43 EKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAISIGPQ 102

Query:    65 LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIR 124
             LR+Q  +++ +V      G+    RS K +      E+R V R++LLETLA +LP  TIR
Sbjct:   103 LRKQFLEMQGVVLKKE-DGREL--RSFKFKDNDQSQEVRGVERRVLLETLASQLPPQTIR 159

Query:   125 YSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRG 183
             +SS++ SI+ + +   LL L DGT     ++IGCDG+ S VA W+GF  P +VG  A RG
Sbjct:   160 FSSKLESIQSNANGDTLLQLKDGTRFLANIVIGCDGIRSKVATWMGFSEPKYVGYCAFRG 219

Query:   184 YSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFV 243
                F     F+      FG+GLR+G++P     +YWF T+ S S   ++ D  A L++  
Sbjct:   220 LGFFPNGQPFQQKVNYIFGRGLRAGYVPVSATKVYWFITFNSPSLGPQMMD-PAILRKEA 278

Query:   244 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDI 303
                +   P  ++ +I+ TP ++I  + L  R     +  + S+G V + GDA HPMTP++
Sbjct:   279 KELVSTWPEDLQNLIDLTPDEAISRTPLADRWLWPGIAPSASKGRVVLVGDAWHPMTPNL 338

Query:   304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELIS 363
             GQG C ALED ++LA  +  A+    G G E        VE  ++ Y  ER  + F L  
Sbjct:   339 GQGACCALEDSVLLANKLASAIN---G-GTES-------VEGAMESYRSERWSQVFRLTV 387

Query:   364 IAYLVGSIQQSDGKILNFLRDKILAS 389
             +A LVG + QSD  ++  +RD I+++
Sbjct:   388 LANLVGKLLQSDNPLVCSVRDNIVSA 413

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 149/410 (36%), Positives = 215/410 (52%)

Query:     1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
             ME +  IVIVG GIAGL TS+ L+R GI+S+VLE +E +R  G      +N W+ALD +G
Sbjct:    26 MEEI-GIVIVGGGIAGLATSIALHRKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLG 84

Query:    61 IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
             +G+ LR     +         +GK     S  V       E RC++R  L+E L+  LP 
Sbjct:    85 VGDRLRLNSSLIHKARTMLIENGKKREFVSNIVD------EARCIKRNDLVEALSDALPK 138

Query:   121 GTIRYSSQVVSIEESGH--FKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP--AFV 176
             GTIR+ S +VSIE+     F ++HLA+G  +K KVLIGCDG NSIV+ +L   NP  AF 
Sbjct:   139 GTIRFGSHIVSIEQDKTTLFPVVHLANGNSIKAKVLIGCDGANSIVSDYLQL-NPKKAFA 197

Query:   177 GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
              R A+RG++ +   HGF    L+     +  G +P  D  ++WF      +     +  S
Sbjct:   198 CR-AVRGFTKYPNGHGFPQEVLRIKQGNVLIGRLPLTDNQVFWFLVHMQDNNHNGKDQES 256

Query:   237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
               +         DL    K +++   ++S+  + L+YR P E++ G   RG+V VAGDA+
Sbjct:   257 --IANLCRKWADDLSEDWKEMVKICNVESLTLTHLRYRAPSEIMLGKFRRGTVTVAGDAM 314

Query:   297 HPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRW 356
             H M P + QGG AALED +VLARC+  A K     G+  ++   K +E  +  Y  ERR 
Sbjct:   315 HVMGPFLAQGGSAALEDAVVLARCL--ARKVGPDHGDLLKDCSMKNIEEAIDEYVDERRM 372

Query:   357 RCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKADFDCGNL 406
             R   L    YL G   Q+  K+L  +   +L        ++   +DCG L
Sbjct:   373 RLLGLSVQTYLTGRSLQTSSKVLRLMFIALLLLLFGRDQIRHTRYDCGRL 422

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:504955430 AT4G15765 "AT4G15765" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 76/263 (28%), Positives = 127/263 (48%)

Query:    55 ALDAVGIGNSLRQQHQQLRSIVAT----PTISGKPSSERSLKVQGKYGEHEMRCVRRKLL 110
             AL   GI + + ++ + +RS  A       +  K    R       YGE  +R V R  L
Sbjct:    21 ALHRKGIKSVVLERSESVRSEGAAFWIRDVLIEKGIKRRESVGPASYGE--VRGVLRNDL 78

Query:   111 LETLAKELPSGTIRYSSQVVSI--EESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 168
             +  LA  LP GT+R    ++S+  +E+  F ++H          VLIGCDG NS+V+++L
Sbjct:    79 VRALAHALPLGTLRLGCHILSVKLDETKSFPIVH----------VLIGCDGSNSVVSRFL 128

Query:   169 GFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ 228
             G      +G  AIRG++++   HGF   F++     + SG +P   + ++WF    +  Q
Sbjct:   129 GLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPITHKLVFWFVVLRNCPQ 188

Query:   229 DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
             D     +  ++ +  L  + +   + K +++   +DS+  +RL+YR P +VL G   RG+
Sbjct:   189 DSNFLKNQEDIARLALASVREFSEEWKEMVKNCDMDSLYINRLRYRAPWDVLSGKFRRGT 248

Query:   289 VCVAGDALHPMTPDIGQG--GCA 309
             V V      P  P +     GCA
Sbjct:   249 VTVGRRQYAPNGPILRTRMFGCA 271

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)]

 Score = 274 (101.5 bits), Expect = 9.1e-23, P = 9.1e-23
 Identities = 100/390 (25%), Positives = 175/390 (44%)

Query:     8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
             +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G+G+ +  
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:    68 QHQQLRSIVATPTISGKPSSERSLK-VQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
                 LR +      SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 122

Query:   127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFK-NPAFVGRSAIRGY 184
              +V   EE      +   DG+     +LI  DG +S +  W LGF     + G     G 
Sbjct:   123 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query:   185 SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAELKQFV 243
              +   +      +  F G+G R   +P      Y+FF     +   E  D   A+L ++ 
Sbjct:   183 VEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYF 242

Query:   244 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDI 303
              G     P Q K +     LD   ++R++    +   +  + RG V + GDA H  TPDI
Sbjct:   243 AGWAP--PVQ-KLI---AALDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDI 294

Query:   304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKER----RWRCF 359
             GQGGCAA+ED +VL     +       + E + +  ++  ++ LK  A++R      +  
Sbjct:   295 GQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK--ARKRCDITHGKDM 352

Query:   360 ELISIAYLVGSIQQSDG-KILNFLRDKILA 388
             +L    Y    +++  G +I+N + D IL+
Sbjct:   353 QLTEAWYQ--ELREETGERIINGMCDTILS 380

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IDA

GO:0019628 "urate catabolic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)]

 Score = 273 (101.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 100/390 (25%), Positives = 175/390 (44%)

Query:     8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
             +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G+G+ +  
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:    68 QHQQLRSIVATPTISGKPSSERSLK-VQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
                 LR +      SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 122

Query:   127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFK-NPAFVGRSAIRGY 184
              +V   EE      +   DG+     +LI  DG +S +  W LGF     + G     G 
Sbjct:   123 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query:   185 SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAELKQFV 243
              +   +      +  F G+G R   +P      Y+FF     +   E  D   A+L ++ 
Sbjct:   183 VEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYF 242

Query:   244 LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDI 303
              G     P Q K +     LD   ++R++    +   +  + RG V + GDA H  TPDI
Sbjct:   243 AGWAP--PVQ-KLI---AALDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDI 294

Query:   304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKER----RWRCF 359
             GQGGCAA+ED +VL     +       + E + +  ++  ++ LK  A++R      +  
Sbjct:   295 GQGGCAAMEDAVVLGAVFRQTRDIAAALCEYEAQRCDRVRDLVLK--ARKRCDITHGKDM 352

Query:   360 ELISIAYLVGSIQQSDG-KILNFLRDKILA 388
             +L    Y    +++  G +I+N + D IL+
Sbjct:   353 QLTEAWYQ--ELREETGERIINGMCDTILS 380

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)]

 Score = 258 (95.9 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 94/354 (26%), Positives = 161/354 (45%)

Query:     8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
             +++G GI GL+ ++GL   GI   V E+ + ++  G A ++W N  K +  +G+G+ +  
Sbjct:     4 LVIGGGIGGLSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIES 63

Query:    68 QHQQLRSIVATPTISGKPSSERSLK-VQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
                 +  +     + G+  ++ SL  +  + G          L  E L        +++ 
Sbjct:    64 YGGPMHFLAYKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREML-DFWGRDAVQFG 122

Query:   127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFK-NPAFVGRSAIRGY 184
              +V   EE      +   DG++ +   LI  DG +S +  + LG+     + G     G 
Sbjct:   123 KRVTRCEEHADGVRVWFTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGL 182

Query:   185 SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS---AELKQ 241
              +   +      +  F G+G R   +P  D   Y+FF     +     ED S   A+L +
Sbjct:   183 VEIDEAIAPGNQWTTFVGEGKRVSLMPVSDGRFYFFFDVPLPAG--LAEDRSTLRADLSR 240

Query:   242 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 301
             +  G     P QV+ +I    LD   ++R++    +   +  + RG V + GDA H  TP
Sbjct:   241 YFSGWA---P-QVQKLI--AALDPQTTNRIEIHDIEP--FERLVRGKVALLGDAGHSTTP 292

Query:   302 DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRV-EMGLKRYAKER 354
             DIGQGGCAALED +VL     E+ +   GV  + E +   RV ++ LK  A++R
Sbjct:   293 DIGQGGCAALEDAVVLGDLFRES-RDIAGVLRQYEAQRCDRVRDLVLK--ARKR 343

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|P86491 P86491 "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas fluorescens (taxid:294)]

 Score = 253 (94.1 bits), Expect = 9.5e-20, P = 9.5e-20
 Identities = 94/333 (28%), Positives = 151/333 (45%)

Query:     7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
             I +VGAG+ G   +  L + G    V E + S    G    V  N  K L  +GI ++L 
Sbjct:     7 IAVVGAGLGGAAAAKLLLQEGFNVRVYEQAPSFSRLGAGIHVGPNVMKILRRIGIEDALN 66

Query:    67 QQ--HQQL---RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
             +Q  H      R       ++  P  + ++K   +YG   +  V R      L + LP  
Sbjct:    67 EQGSHPDYWYSRHWQTGDVLAQIPLGDYAVK---EYGASYLT-VHRGDFHALLVEALPDS 122

Query:   122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS-IVAKWLGFKNPAFVGRSA 180
              + Y   +  +E+ G+  ++H ADGT  +  ++IG DGVNS I  + LG + P + G  A
Sbjct:   123 VMAYGKFLTKVEDRGNVVVMHFADGTTEEADIVIGPDGVNSRIREELLGPELPKYAGYLA 182

Query:   181 IRG-YSDFKGSHGFEP--NFLQFFG--KGLRSGFIPCDDQTIYWFF-----TWTSSSQDK 230
              R  +   +   G  P    ++++   + + + F+      +Y+        W  +  D+
Sbjct:   183 HRAVFPTPEVKAGMLPFDACVKWWSDDRHMMTYFVTGKADELYYVTGVPVEKWDLN--DR 240

Query:   231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVC 290
              LE    E+++   G    + A + A +E T       S L+ R P   LW   SRG + 
Sbjct:   241 WLESSKEEMREAFSGWHPTVQALIDATVEVTKW-----SLLE-RDPLP-LW---SRGRLV 290

Query:   291 VAGDALHPMTPDIGQGGCAALEDGIVLARCINE 323
             + GDA HPM P + QG   A+EDG +LARC+ E
Sbjct:   291 LLGDACHPMKPHMAQGAAMAIEDGAMLARCLKE 323

GO:0004497 "monooxygenase activity" evidence=IDA

GO:0019439 "aromatic compound catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	4e-42
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	4e-36
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	3e-28
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	3e-17
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	3e-17
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	3e-16
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	5e-15
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	2e-13
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-10
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	3e-10
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	4e-10
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	4e-08
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	1e-07
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	2e-07
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	3e-07
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	2e-06
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	2e-06
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	1e-05
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	1e-05
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	2e-05
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	3e-05
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	4e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	6e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	7e-05
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	1e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	3e-04
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	4e-04
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	6e-04
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.002
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.002
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	0.003

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  151 bits (384), Expect = 4e-42
 Identities = 96/403 (23%), Positives = 154/403 (38%), Gaps = 38/403 (9%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-SSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
           D+ IVGAG AGL  +L L R G+   +LE +   L   G    +  NA +AL+ +G+ + 
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 65  LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETL---AKELPSG 121
           L         ++      G+          G         V R  LL  L   A+ LP+ 
Sbjct: 64  LEALGVPPLHVMVV-DDGGRRLLIFDAAELG--RGALGYVVPRSDLLNALLEAARALPNV 120

Query: 122 TIRYSSQVVSIEESGHFKLLHLA-DGTILKTKVLIGCDGVNSIVAKWLG----FKNPAFV 176
           T+R+ ++V ++E+ G    + L+ DG  L   +L+G DG NS V +  G           
Sbjct: 121 TLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDY-- 178

Query: 177 GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
           G++A+    + +     E    + F        +P  D      ++      +       
Sbjct: 179 GQTALVA--NVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236

Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
            E  + +  +L +     +     T + S  +  L  R  +        RG V + GDA 
Sbjct: 237 EEFLRELQRRLGERDPLGRV----TLVSSRSAFPLSLRVAER-----YRRGRVVLIGDAA 287

Query: 297 HPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRW 356
           H M P  GQG   ALED   LA  +  A +        D           L  Y   RR 
Sbjct: 288 HAMHPLAGQGANLALEDAAALAEALAAAPR-----PGADAA--------ALAAYEARRRP 334

Query: 357 RCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLLLKKA 399
           R   +  ++  +G +  +DG    FLR+  L        L++A
Sbjct: 335 RAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREA 377

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score =  135 bits (342), Expect = 4e-36
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 60/396 (15%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
           I I+GAGI GLT +  L   G    V E +ES++  G    +  N  K L    +   ++
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIK 62

Query: 67  QQHQQLR--SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIR 124
              Q L   +++      G   ++  LK            + R+ L++ +   +    I 
Sbjct: 63  NAGQILSTMNLLDD---KGTLLNKVKLKSNTL-----NVTLHRQTLIDIIKSYVKEDAIF 114

Query: 125 YSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA-FVGRSAIRG 183
              +V  IE       +H ADG      + IG DG++S V + +   +   + G +  RG
Sbjct: 115 TGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRG 174

Query: 184 YSDFKGSHGFEPN-FLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE-LKQ 241
             D        P+   +++G   R G +P  +   YWF T  +  +D +        L+ 
Sbjct: 175 LIDDIDLK--LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQA 232

Query: 242 F----------VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCV 291
           +          +L K  +       + +  PL S +  R                  + +
Sbjct: 233 YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGR------------------IVL 274

Query: 292 AGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYA 351
            GDA H  TP++GQG   A+ED IVLA C+N               +F K     L+RY 
Sbjct: 275 LGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-------------DFEK----ALQRYD 317

Query: 352 KERRWRCFELISIAYLVGSIQQSDGKILNFLRDKIL 387
           K R     ++I  +  +G I Q + K+L  LR++++
Sbjct: 318 KIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVM 353

Length = 373

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score =  113 bits (286), Expect = 3e-28
 Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 59/395 (14%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           M +V+ ++IVG GI GL+ ++ L R GI   ++E     RV G   T+  NA +AL  +G
Sbjct: 1   MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELG 60

Query: 61  IGNSLRQ---QHQQLRSIVATPTISGKPSSERSL--KVQGKYGEHEMRCVRRKLLLETLA 115
           + +   +       +       T+  +  + R     + G  G   MR    ++L +  A
Sbjct: 61  VLDECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGI--MRPALARILADA-A 117

Query: 116 KELPSGT-IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-AKWLG-FKN 172
           +   +G  +R  + V +IE+      +  +DGT  +  +++G DG+ S V +        
Sbjct: 118 RA--AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPE 175

Query: 173 PAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232
           P + G+   R           +   L + G   ++G +P  +  +Y F T      D   
Sbjct: 176 PEYTGQGVWRAV--LPRPAEVD-RSLMYLGPTTKAGVVPLSEDLMYLFVT--EPRPDNPR 230

Query: 233 EDHS---AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVL-----WGNI 284
            +     A L++ +      +  +++  I          +++ YR P E L     W   
Sbjct: 231 IEPDTLAALLRELLAPFGGPVLQELREQITD-------DAQVVYR-PLETLLVPAPW--- 279

Query: 285 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKR-- 342
            RG V + GDA H  TP + QG   A+ED IVLA                  EE  +   
Sbjct: 280 HRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA------------------EELARHDS 321

Query: 343 VEMGLKRYAKERRW-RCFELISIAYLVGSIQQSDG 376
           +E  L+ Y   RRW RC  ++  +  +G I+   G
Sbjct: 322 LEAALQAYY-ARRWERCRMVVEASARIGRIEIEGG 355

Length = 375

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 83.6 bits (206), Expect = 3e-17
 Identities = 101/378 (26%), Positives = 157/378 (41%), Gaps = 57/378 (15%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES-LRVTGF---AFTVWTNAWKALDAVGIG 62
           +++ G GI GL  +L   + G   +V E   S +R  G       + +NA  AL+A+ I 
Sbjct: 84  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDI- 142

Query: 63  NSLRQQHQQLRSIVA------TPTISGK---------PSSERSLKVQGKYGEHEMRCVRR 107
             + +Q  +   I           ISG          P++ R L V         R + R
Sbjct: 143 -DVAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPV--------TRVISR 193

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKW 167
             L + LA+ +    IR  S VV  E+SG    + L +G   +  +L+G DG+      W
Sbjct: 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGI------W 247

Query: 168 LGFKNPAFVGRS--AIRGYSDFKGSHGFEPNFLQFFGK----GLRSGFIPCD--DQTIYW 219
              +N  F GRS     GY+ + G   F P  ++  G     G +  F+  D     + W
Sbjct: 248 SKVRNNLF-GRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQW 306

Query: 220 FFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEV 279
           +       +     D    +K+ +          V  ++  T  D+I+   +  R P   
Sbjct: 307 Y---AFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPG-F 362

Query: 280 LWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEF 339
            WG   +G V + GD++H M P++GQGGC A+ED   LA  ++EA K      +  E   
Sbjct: 363 TWG---KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWK------QSVETNT 413

Query: 340 NKRVEMGLKRYAKERRWR 357
              V   LKRY + RR R
Sbjct: 414 PVDVVSSLKRYEESRRLR 431

Length = 668

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 83/378 (21%), Positives = 130/378 (34%), Gaps = 69/378 (18%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           D++IVG G AGL  +L L R G+R +++E   +  V   A  +     + L   G+    
Sbjct: 3   DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGL---- 58

Query: 66  RQQHQQLRSIVATPTISGKPS------SERSLKVQGKYGEHEMRCVRRKLLLETL----A 115
                    I+A               S R   +           V  +  LE +    A
Sbjct: 59  ------EDRILAEGAPHEGMGLAFYNTSRRRADLDFLTS-PPRVTVYPQTELEPILREHA 111

Query: 116 KELPSGTIRYSSQVVSIEESG---HFKLLHLADGTI--LKTKVLIGCDGVNSIVAKWLGF 170
           +      +R+ ++V+S+E+ G      +    DG    ++ K L+GCDG  S V K LG 
Sbjct: 112 EARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQLGI 170

Query: 171 KNPAFVGRSA--------IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTI---YW 219
           +   F G               SD         ++L            P         Y 
Sbjct: 171 EFEGFEGVPFGSLDVLFDAPDLSDPVERAFV--HYLIGAPHSRGFMVGPWRSAGRSRYYV 228

Query: 220 FFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRL--QYRQPQ 277
              W    +++  E    E KQ +      +      ++ K+     + SR+  +YR   
Sbjct: 229 QVPWDPEVEERPEEFTDEEAKQRLR-SAVGIDLADVEILWKSIWG--VRSRVATRYR--- 282

Query: 278 EVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 337
                   +G V +AGDA H   P  GQG    ++D   LA  +   L+     G   E 
Sbjct: 283 --------KGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLR-----GTAGEA 329

Query: 338 EFNKRVEMGLKRYAKERR 355
                    L  Y  ERR
Sbjct: 330 --------LLDTYEAERR 339

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           M  V  ++IVG GI GL  +L L R GI+  +LE +  +   G    +  NA+ ALDA+G
Sbjct: 1   MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALG 60

Query: 61  IGNSLRQQ-----HQQLRSIVATPTISGKPSSERSLKVQGK-YGE-HEMRCVRRKLLLET 113
           +G + RQ+     H  +   V    +   P+ +      G  Y   H  R      LLE 
Sbjct: 61  VGEAARQRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIH--RADIHLSLLEA 118

Query: 114 LAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164
              + P    R S+ VV IE+ G    +    G       LIGCDGV S+V
Sbjct: 119 -VLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168

Length = 396

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 39/182 (21%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
            ++I G GI GLT +L L++ GI  +V E++  LR  G    +  +A + L  +G+ ++L
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 66  RQQHQQLRSIVATPTISGKPSSERSLKVQGKYGE---HEMR-----------CVRR---- 107
                     +   T        R L    ++G+    E R            + R    
Sbjct: 62  DA--------IGIRT--------RELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQ 105

Query: 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL---ADGTI--LKTKVLIGCDGVNS 162
            LLL+ + + L    +R   +VV  E+     ++ L   A G +  ++  VLIG DG++S
Sbjct: 106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165

Query: 163 IV 164
            V
Sbjct: 166 AV 167

Length = 413

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 83/365 (22%), Positives = 125/365 (34%), Gaps = 91/365 (24%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-----------------SSESLRVTGFAFTV 48
            ++IVG G  GL  +L L R G+ S+++E                 S E  R  G A   
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIA--- 65

Query: 49  WTNAWKALDAVGI---------------GNSLR--QQHQQLRSIVATPTISGK-PSSERS 90
                  + + G+               G  L   +      +I       G  PS E  
Sbjct: 66  -----DEVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELP 120

Query: 91  LKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH---FKLLHLADGT 147
            ++  KY E         +LLE  A   P  T+RY  ++   E+        +  L  G 
Sbjct: 121 HRIPQKYLE--------PILLEH-AAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGE 171

Query: 148 ILK--TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI-RGYS------DFKGSHGFEPNFL 198
            L      L+GCDG  S V + LG     + G S + R  S            G +P ++
Sbjct: 172 SLTIRADYLVGCDGARSAVRRSLGIS---YEGTSGLQRDLSIYIRAPGLAALVGHDPAWM 228

Query: 199 QF-FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA-ELKQFVLGKLHDLPAQVKA 256
            + F    R   +  D +  + F        +  ++D  A    +  +G+        + 
Sbjct: 229 YWLFNPDRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE----DIDYE- 283

Query: 257 VIEKTPLDSIISSRL---QYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED 313
           V+   P       RL    YR           RG V +AGDA H  TP  G G    + D
Sbjct: 284 VLSVVPW---TGRRLVADSYR-----------RGRVFLAGDAAHLFTPTGGYGMNTGIGD 329

Query: 314 GIVLA 318
            + LA
Sbjct: 330 AVNLA 334

Length = 545

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 101/422 (23%), Positives = 162/422 (38%), Gaps = 83/422 (19%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAW-----KALDAV 59
           DIVIVG G  GL  +L L R G ++  ++E++         F    +A      + L+ +
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60

Query: 60  GIGNSLRQQH-QQLRSIVATPTISGKP----SSERSLKVQGKYGEHEMRCVRRKLLLETL 114
           G+ + +     Q +R I  +   S       + E  L+  G   E+    V ++ L E L
Sbjct: 61  GVWDKIEPARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVEN---RVLQQALWERL 117

Query: 115 AKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA 174
            +     TI   ++VV +        L L DG  L+ ++L+G DG NS V +  G     
Sbjct: 118 QELPNRVTILCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTG 177

Query: 175 F-VGRSAIRGYSDFKGSHG------FEPN----FLQFFGKGLRSGFIPCDDQTIYWFFTW 223
           +  G+SA+      +  H       F P      L       RS  +            W
Sbjct: 178 WDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDN--RSSLV------------W 223

Query: 224 TSSSQDKEL------EDHSAEL-KQFV--LGKLHDLPAQVKAVIEKTPLDSIISSRLQYR 274
           T   ++ E       E+  AEL + F   LG +  L  +  A     PL    + R  Y 
Sbjct: 224 TLPPEEAERLLALSDEEFLAELQRAFGSRLGAIT-LVGERHAF----PLSLTHAKR--YV 276

Query: 275 QPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 334
            P+  L G+        A   +HP+    GQG    L D   LA  + +A +  + +G  
Sbjct: 277 APRLALIGD--------AAHTIHPLA---GQGLNLGLRDVAALAEVLEDARRRGEDIGSP 325

Query: 335 DEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGL 394
                  RV   L+RY + RR+    ++     +  +  +D   L  LR+       +GL
Sbjct: 326 -------RV---LQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRN-------LGL 368

Query: 395 LL 396
            L
Sbjct: 369 RL 370

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 26/222 (11%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           D+V+VGAG AG + +  L   G+R ++LE     R       +   A + LD  G     
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVN 61

Query: 66  RQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRK---LLLETLAKELPSG- 121
             +  +  S            +  S+++  +     +  + R      L   A+E  +G 
Sbjct: 62  LVRGARFFS-----------PNGDSVEIPIETELAYV--IDRDAFDEQLAERAQE--AGA 106

Query: 122 TIRYSSQVVS-IEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA 180
            +R  ++V+          ++       +  K++IG DG  SIVAK LG K        A
Sbjct: 107 ELRLGTRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPREYGVA 166

Query: 181 IRGYSDFKGSHGFEPNFLQ-FFGKGLRSGF----IPCDDQTI 217
            R   +       + +F++ +  +G+  G      P  D T 
Sbjct: 167 ARAEVEMPDEEV-DEDFVEVYIDRGIVPGGYGWVFPKGDGTA 207

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 84/410 (20%), Positives = 136/410 (33%), Gaps = 54/410 (13%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV-TGFAFTVWTNAWKALDAVGIGNS 64
           D+VIVGAG AG + +  L + G+  +VLE              +   A + L        
Sbjct: 5   DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELI------- 57

Query: 65  LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GT 122
                +  R +               + V   Y       V R    + LA+        
Sbjct: 58  PDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYI------VDRAKFDKWLAERAEEAGAE 111

Query: 123 IRYSSQVVS-IEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKN-PAFVGRSA 180
           +   ++V   I E     +   A    ++ KV+I  DGVNS +A+ LG K+         
Sbjct: 112 LYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIG 171

Query: 181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE--------L 232
           ++         G    FL +    +  G          W F       D          L
Sbjct: 172 VKEV-IEVPDDGDVEEFL-YGPLDVGPGG-------YGWIFP----LGDGHANVGIGVLL 218

Query: 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVA 292
           +D S      +L +  + PA  K ++    L+       +       L        V + 
Sbjct: 219 DDPSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPL----VGDGVLLV 274

Query: 293 GDA---LHPMTPDIGQGGCA-ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEM-GL 347
           GDA   ++P+T      G   A++ G + A  I EAL+  +    E E    K +    L
Sbjct: 275 GDAAGFVNPLT----GEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDL 330

Query: 348 KRYAKERRWRCFELISIAYLVGSIQQ--SDGKILNFLRDKILASFLVGLL 395
           K     +        ++  L+  +      G I  +LR  IL   L G+L
Sbjct: 331 KSLRLLKLLLRLLDRTLPALIKLLADKDLLGLIKKYLRKLILYPLLKGVL 380

Length = 396

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 19/189 (10%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
            +I GAG+AGL+ +L L   G    ++E ++ L   G    +  NA + L+ +G+ + L 
Sbjct: 5   PLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLS 64

Query: 67  QQHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRR----KLLLETLAKELPSG 121
                 +++        +P     L  +  K   H      R      LL+      P  
Sbjct: 65  GTGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNN-PGI 123

Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKV--------LIGCDGVNSIVAKWLGFKNP 173
            I+  +++ S  ++G     +    TI++T          LI CDGV S++    GF   
Sbjct: 124 EIKLGAEMTSQRQTG-----NSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKA 178

Query: 174 AFVGRSAIR 182
            F G  A R
Sbjct: 179 RFSGHIAWR 187

Length = 400

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 7   IVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           + I+G GIAG+  +L L +   +   + E++ +    G   +   NA +A+  +G+G   
Sbjct: 3   VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLG--- 59

Query: 66  RQQHQQLRSIVATPTI-------SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
            + + Q+      P         +G  +S     +    G+     V R   L+ L K L
Sbjct: 60  -EAYTQVADSTPAPWQDIWFEWRNGSDASYLGATIAPGVGQSS---VHRADFLDALLKHL 115

Query: 119 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS----IVAKWLGFK--N 172
           P G   +  +   IEE      +   DGT  +  +LIG DG+ S     V +  G     
Sbjct: 116 PEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVR 175

Query: 173 PAFVGRSAIRGYSD 186
           P F G  A RG  D
Sbjct: 176 PRFSGTCAYRGLVD 189

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 35/200 (17%)

Query: 6   DIVIVGAGIAGLTTSLGL--------YRLGI----RSMVLESSESLRVTGF----AFTVW 49
           D+VIVG G  GL  +  L         ++ +     +  L+S    +  G       ++ 
Sbjct: 2   DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSIT 61

Query: 50  TNAWKALDAVGIGNSLRQQ-HQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRC-VRR 107
             +      +G  + ++    Q    +           S   ++     G+ +M C +  
Sbjct: 62  PASISFFKKIGAWDHIQSDRIQPFGRMQVWDG-----CSLALIRFDRDNGKEDMACIIEN 116

Query: 108 KLLLETLAKEL------------PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLI 155
             +  +L   L            P+  I  +       ++ ++  + L+DG +L TK+LI
Sbjct: 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLI 176

Query: 156 GCDGVNSIVAKWLGFKNPAF 175
           G DG NS V K        +
Sbjct: 177 GADGSNSNVRKAANIDTTGW 196

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 85/389 (21%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVT--GFAFTVWTNAWKALDAVGI 61
           D+VI G G  GL  ++ L +    +   V++++ +   +    A  +   A + L+A+G+
Sbjct: 3   DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGV 62

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHE----MRCVRRKLLLETL--- 114
            + +  + Q +  +V T + +  P     L  +G+    E    M  V  ++L+  L   
Sbjct: 63  WDEIAPEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHM--VENRVLINALRKR 120

Query: 115 AKELPSG-TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP 173
           A+ L  G  +R ++ V   E       + L+DG++L+ ++L+  DG  S + +  G K  
Sbjct: 121 AEAL--GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTV 178

Query: 174 AF-VGRSAIRGYSDFKGSHG--FEPNFLQF--FG----KGLRSGFIPCDDQTIYWFFTWT 224
            +  G+S I    + +  HG   E +FL    F     KG RS  +            WT
Sbjct: 179 GWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLV------------WT 226

Query: 225 SSSQDKE----LED--HSAELKQFVLGKLHDLPAQVKAVIEKT--PLD-----SIISSRL 271
             + D E    L+D    AEL+Q    +L     ++K + ++   PL      S ++ R 
Sbjct: 227 ERTADAERLVALDDLVFEAELEQRFGHRL----GELKVLGKRRAFPLGLTLARSFVAPRF 282

Query: 272 QYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGV 331
                              + GDA H + P  GQG    L+D   LA  + EA +    +
Sbjct: 283 ------------------ALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDI 324

Query: 332 GEEDEEEFNKRVEMGLKRYAKERRWRCFE 360
           G  D           L+RY   +RWR F+
Sbjct: 325 GSLD----------VLERY---QRWRRFD 340

Length = 403

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 87/390 (22%), Positives = 143/390 (36%), Gaps = 95/390 (24%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLE--SSESLRVTGFAFTVWTNAWKALDAVGIGN 63
           D+ IVG GI GLT +  L   G+R  ++E   +E+    G A+ +   + +  + +G+  
Sbjct: 20  DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE 79

Query: 64  SLRQQHQQLRSIVATP-----TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
            +  Q  + R I  +       +  +P+   +  + G  GEH       ++LLE L + L
Sbjct: 80  KILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEAL-GYVGEH-------QVLLEALQEFL 131

Query: 119 ---PSGTIRYSSQVVSIEESGHFKLLHL--ADGTI-LKTKVLIGCDGVNSIVAKWLGFKN 172
              P+ T    ++VVS+E       + L        L++K+++  DG  S + +  G K 
Sbjct: 132 QSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKT 191

Query: 173 P----------AFVGRSAIRGYSDFK-----GSHGFEPNFLQFFGKGLRSGFIPCDDQTI 217
                      A V   A      ++     G     P              +P +   I
Sbjct: 192 KGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILP--------------LPGNRCQI 237

Query: 218 YWFFTWTSSSQDKELEDHS--AELKQFV---LGKLHDL------PAQVKAVIEKTPLDSI 266
            W      +     L +    AEL+Q     LGKL  L      P Q            +
Sbjct: 238 VWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQ------------L 285

Query: 267 ISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK 326
           + S  +Y Q +  L            GDA H   P  GQG    + D   LA+ +  A +
Sbjct: 286 MQSD-RYVQHRLAL-----------VGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQ 333

Query: 327 TKQGVGEEDEEEFNKRVEMGLKRYAKERRW 356
             + +G          V   LKRY + R+ 
Sbjct: 334 RGEDIGS-------LAV---LKRYERWRKR 353

Length = 415

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 68/328 (20%), Positives = 129/328 (39%), Gaps = 36/328 (10%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
           + I GAGIAG T +  L R G    ++E +  LR  G+    W   ++    +GI + LR
Sbjct: 3   VAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR 62

Query: 67  QQHQQLRSI-VATPTISGKPSSERSLKV-QGKYGEHEMRCVRRKLLLETLAKELPSGT-I 123
           +   Q+  +    PT  G+  ++ ++   +   G+ +   + R  L   +   +      
Sbjct: 63  EAGYQIEHVRSVDPT--GRRKADLNVDSFRRMVGD-DFTSLPRGDLAAAIYTAIDGQVET 119

Query: 124 RYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-----------AKWLGFKN 172
            +   + +I+E      +    GT     ++IG DG++S V             +LG K 
Sbjct: 120 IFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKV 179

Query: 173 PAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232
            A V    + GY         E  ++ +   G +   +        + F + +   +  L
Sbjct: 180 AACV----VDGY-----RPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPL 230

Query: 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTP-LDSIISSRL-QYRQPQEVLWGNISRGSVC 290
              + E KQ +  +  D+  +   ++     ++ +    + Q R  +   W   SRG V 
Sbjct: 231 -TPAEE-KQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDR---W---SRGRVA 282

Query: 291 VAGDALHPMTPDIGQGGCAALEDGIVLA 318
           + GDA    +   G+G   A+ +  VLA
Sbjct: 283 LVGDAAACPSLLGGEGSGLAITEAYVLA 310

Length = 391

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 285 SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVE 344
           S G V + GDA HPMT  + QG C ALED + L     +AL+   G             E
Sbjct: 284 STGRVTLLGDAAHPMTQYMAQGACMALEDAVTLG----KALEGCDG-----------DAE 328

Query: 345 MGLKRYAKERRWRCFELISIAYLVGSIQQSDG 376
                Y   R  R   ++  A  +G I  + G
Sbjct: 329 AAFALYESVRIPRTARVVLSAREMGRIYHAKG 360

Length = 396

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 66/274 (24%)

Query: 107 RKLLLETLAKELPSGTIRYSSQVVSIE--ESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164
           R+LLL  L    P+  +R+ + +  IE    G    + L+DG  +   VL+G DG  S++
Sbjct: 109 RRLLLAKLDGL-PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167

Query: 165 --------AKWLGFKNPAFVGRSAI--------RGYSDFKGSHGFEPNFLQFFGKGLRSG 208
                   A+ + +  P   G  A+        R Y D      +               
Sbjct: 168 RDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAY--------------- 212

Query: 209 FIPCDDQTIYWFFTWTSSSQDKELEDHS-----AELKQFVLGKLHDLPAQVKAVIE--KT 261
           F P  DQ      ++ +      L D +     A L +FV  +  D  A + A       
Sbjct: 213 FYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLI 272

Query: 262 PLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCI 321
           PL  +   R   R             +V + GDA H + P  GQG   A+ED   L  C+
Sbjct: 273 PLGRMNLDRYHKR-------------NVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL 319

Query: 322 NEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERR 355
           +  L  +  + +             L+R+ + RR
Sbjct: 320 DLHLSGQIALAD------------ALERFERIRR 341

Length = 388

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 41/193 (21%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
            V++G  + GL  +L L R G    V E S +                 LD  G G  L 
Sbjct: 9   AVVIGGSLGGLFAALLLRRAGWDVDVFERSPT----------------ELDGRGAGIVL- 51

Query: 67  QQHQQLRSI-----VATPTISGKPSSERSLKVQGKYGEHEMRCVRRK----------LLL 111
               +L        VA P   G PS ER       Y + + R V+R+          +L 
Sbjct: 52  --QPELLRALAEAGVALPADIGVPSRER------IYLDRDGRVVQRRPMPQTQTSWNVLY 103

Query: 112 ETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-AKWLGF 170
             L    P+        +V  E+ G       ADG      +L+G DG  S V A+ L  
Sbjct: 104 RALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPD 163

Query: 171 KNPAFVGRSAIRG 183
             P + G  A RG
Sbjct: 164 VRPTYAGYVAWRG 176

Length = 386

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 82/410 (20%), Positives = 144/410 (35%), Gaps = 83/410 (20%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLG-IRSMVLES-SESLRVTGF---AFTVWTNAWKALDAVG 60
           D++IVG G+ GL+ +L L RLG I+  ++E+ S S    GF   +  +   + + L+ +G
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLG 60

Query: 61  IGNSLRQQHQQLRSI-VATPTISGKP---SSERSLKVQGKYGEHEMRCVRRKLLLETLAK 116
           +   L      +  I V+     G     +SE  L   G    + +        L +   
Sbjct: 61  LWPKLAPFATPILDIHVSDQGHFGATHLRASEFGLPALG----YVVELADLGQALLSRLA 116

Query: 117 ELPSGTIRYSSQVVSIE-ESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG------ 169
            L +  +   ++   I     + ++  L +G  L+ K+LI  DG NS V + L       
Sbjct: 117 LLTNIQLYCPARYKEIIRNQDYVRVT-LDNGQQLRAKLLIAADGANSKVRELLSIPTEEH 175

Query: 170 -FKNPAFVGRSAIRGYSDFKGSHGFEPNFLQF--FGKGLRSGFIPCDDQTIYWFFTWTSS 226
            +   A +              H        F  F        +P  D        W   
Sbjct: 176 DYNQTALI----------ANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRS-SLVWCLP 224

Query: 227 SQDKEL------EDHSAELKQ---FVLGKLHDLPAQVKAVIEKTPLDSIISSR----LQY 273
           S+  +        +  AEL+Q   + LGK+                 + +  R    L+ 
Sbjct: 225 SKQADTIANLPDAEFLAELQQAFGWRLGKI-----------------TQVGERKTYPLKL 267

Query: 274 RQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGE 333
           R  +  +        V + G+A   + P  GQG    L D   LA  + +A      +G 
Sbjct: 268 RIAETHV-----HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARID---LGT 319

Query: 334 EDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLR 383
                        L+ Y + R++  F  I +   +  +  +   +L  LR
Sbjct: 320 YAL----------LQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALR 359

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 88/385 (22%), Positives = 137/385 (35%), Gaps = 87/385 (22%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE---------SLRVTGFAFTVWTNAWKAL 56
           D VIVG G+ G   +L L   G+   ++E  E          LRV  FA     +    L
Sbjct: 8   DAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFA----ADNAALL 63

Query: 57  DAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMR------------- 103
           D +G+  ++R    Q                 R ++V    G  E+              
Sbjct: 64  DRLGVWPAVRAARAQ---------------PYRRMRVWDAGGGGELGFDADTLGREQLGW 108

Query: 104 CVRRKLLLETLAKELPSGTIRY--SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161
            V   LL++ L   L +  ++    ++VV++E+      L L DG  L+  + I  DG  
Sbjct: 109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168

Query: 162 SIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFEPNFLQFFGKGLRSGFIPCDD--QTIY 218
           S + +  G   P      A RG   F  + H  +    Q F        +P  D   +I 
Sbjct: 169 STLRELAGL--PVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIV 226

Query: 219 WFFTWTSSSQDKELED--HSAELKQFVLGKLHDLPAQVKAVIEKT--PLDSIISSRLQYR 274
           W      + +   L++   S EL Q    +L     +V+    +T  PL   +    QY 
Sbjct: 227 WTLPDAEAERVLALDEAAFSRELTQAFAARL----GEVRVASPRTAFPLRRQLVQ--QYV 280

Query: 275 QPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE 334
                       G V   GDA H + P  GQG    L D   L + + +A          
Sbjct: 281 -----------SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHA-------- 321

Query: 335 DEEEFNKRVEMG----LKRYAKERR 355
                 +R +      L+R+A+ RR
Sbjct: 322 ------RRADWAAPHRLQRWARTRR 340

Length = 392

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 32/116 (27%)

Query: 286 RGSVCVAGDALHPMTPDIGQGGCAALEDGI--------VLARCINEALKTKQGVGEEDEE 337
            G V +AGDA H M P  GQG  + + D          VL     +AL            
Sbjct: 285 SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDAL------------ 332

Query: 338 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG 393
                    L  Y +ERR     +I +A  +G +     ++   LRD +     VG
Sbjct: 333 ---------LDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAV---LPVG 376

Length = 500

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 62/198 (31%)

Query: 6   DIVIVGAGIAGLTTS--LGLYRLGIRSMVLE--------------SSESLRVTGFAFTVW 49
           D+VIVGAG  GLT +  LG Y  G+R +VLE                E+LRV        
Sbjct: 12  DVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPTLYDLPRAVGIDDEALRV-------- 61

Query: 50  TNAWKALDAVGIGNSLRQ---QHQQLRSI---------VATPTI--SGKPSSERSLKVQG 95
                 L A+G+ + +      +  +R +         +A P+    G P   R+   Q 
Sbjct: 62  ------LQAIGLADEVLPHTTPNHGMRFLDAKGRCLAEIARPSTGEFGWP--RRNAFHQ- 112

Query: 96  KYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT----ILKT 151
                 +      +L   LA   P   +R+  +V ++ +      + L D       ++ 
Sbjct: 113 ----PLL----EAVLRAGLA-RFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA 163

Query: 152 KVLIGCDGVNSIVAKWLG 169
           + ++GCDG NS V + LG
Sbjct: 164 RYVVGCDGANSFVRRTLG 181

Length = 500

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 21/157 (13%)

Query: 6   DIVIVGAGIAGLTTSLGLY--RLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGN 63
           D+VIVGAG+AGL  +L L   R G+R +++++             W++ ++ L  +    
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNN--HTWSDEFEDLGPLA--- 55

Query: 64  SLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP-SGT 122
              +        V  P    K            YG      V    L E L +    +G 
Sbjct: 56  PCVEHSWP-GYEVRFPDGRRKLIGRG-------YG-----RVSSDRLHEELLRRCAENGV 102

Query: 123 IRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159
           IR +++V S++      L+ L DG  ++ +++I   G
Sbjct: 103 IRLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARG 139

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2  ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-------SLRVTGFAFTV 48
            + D+V++GAG+ GL  +  L R G++  VLE ++       +  + GF F  
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDT 54

Length = 487

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-----SLRVTGFAFTVW 49
          M    D+VI+G GI GL+ +  L   G    VLE+ E     + R  G     W
Sbjct: 1  MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPW 54

Length = 387

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 28/176 (15%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKA----LDAVGI 61
           D+ ++G G AGL  +L L R G+R  ++E    +           + +      L  +G+
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI--------PGNHTYGVWDDDLSDLGL 52

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
            +   +           P        ++  K+   YG      V    L E L ++ P G
Sbjct: 53  AD-CVEHVWPDVYEYRFP--------KQPRKLGTAYGS-----VDSTRLHEELLQKCPEG 98

Query: 122 TIRY-SSQVVSIEESG-HFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF 175
            + +   + +  E  G     ++ A G  ++ +++I   G   +V       N  F
Sbjct: 99  GVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGF 154

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 44/336 (13%)

Query: 4   VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGN 63
           ++ +V+ GA +AG   +  L R G    ++E    LR  G A  V   A   L+ +G+  
Sbjct: 1   MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLA 60

Query: 64  SLRQQHQQLRSIVATPTISGKPSSE-RSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGT 122
           + ++   ++R          +   +  S    G     ++  +R  L+      EL  G 
Sbjct: 61  AAQEHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLV------ELLYGA 114

Query: 123 IRYSSQ------VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
            + S +      + ++++ G    +        +  ++IG DG++S V + +      FV
Sbjct: 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFV 174

Query: 177 GRSAIRGYSDFKGSHG--FE-PNFLQF-------FGKGLRSGFIPCDDQT----IYWFFT 222
            R          G+H   F  PNFL+        +G    +G     + T       F  
Sbjct: 175 KRL---------GTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMD 225

Query: 223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWG 282
                  ++ E   AEL++ +      + AQ+   +   P          + +  ++L  
Sbjct: 226 TELRIDYRDTEAQFAELQRRMAEDGW-VRAQLLHYMRSAP-------DFYFDEMSQILMD 277

Query: 283 NISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318
             SRG V + GDA +  +P  GQG   AL    +LA
Sbjct: 278 RWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILA 313

Length = 372

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES----LRVTGFAFTVWTNAWKALDAVGI 61
           DI ++G G AGL  ++ L R G  S+ L + E     LR T         + + L+ +G+
Sbjct: 9   DIAVIGGGPAGLAAAIALARAG-ASVALVAPEPPYADLRTTALL----GPSIRFLERLGL 63

Query: 62  GNSLRQQHQQLRS--IV-ATPTISGKP-----SSERSLKVQGKYGEHEMRCVRRKLLLET 113
              L      L+S  IV AT  +   P     ++E      G Y       +   LL   
Sbjct: 64  WARLAPHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFG-YN------IPNWLLNRA 116

Query: 114 L---AKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG 169
           L     ELP+ T R+  +  S+        + LADGT L  ++++G DG NS V +  G
Sbjct: 117 LEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAG 174

Length = 388

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLE 34
          D+V++G GI GL+T+  L R G+   +LE
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLE 29

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
          D+V++G+G+AGL  +L     G++  V+E  +         T W++    +DA+G    
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA----TAWSSGG--IDALGTPPQ 53

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PRK06753	373	hypothetical protein; Provisional	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PLN02985	514	squalene monooxygenase	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	100.0
PRK11445	351	putative oxidoreductase; Provisional	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	100.0
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	100.0
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	100.0
PRK10015	429	oxidoreductase; Provisional	100.0
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.98
PRK10157	428	putative oxidoreductase FixC; Provisional	99.97
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.97
PLN02697	529	lycopene epsilon cyclase	99.97
PLN02463	447	lycopene beta cyclase	99.97
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.95
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.95
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.93
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.9
COG2081	408	Predicted flavoproteins [General function predicti	99.65
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.6
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.58
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.58
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.57
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.54
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.54
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.54
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.53
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.52
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.51
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.5
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.49
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.49
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.44
COG0579	429	Predicted dehydrogenase [General function predicti	99.43
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.43
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.43
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.39
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.39
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.36
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.35
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.34
PRK07233	434	hypothetical protein; Provisional	99.32
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.32
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.32
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.32
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.29
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.28
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.28
PRK05257	494	malate:quinone oxidoreductase; Validated	99.28
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.28
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.27
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.24
PLN02568	539	polyamine oxidase	99.24
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.24
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.23
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.22
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.22
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.19
PLN02612	567	phytoene desaturase	99.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.16
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.16
PLN02268	435	probable polyamine oxidase	99.14
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.14
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.13
PLN02576	496	protoporphyrinogen oxidase	99.13
PLN02661	357	Putative thiazole synthesis	99.12
PRK08274	466	tricarballylate dehydrogenase; Validated	99.11
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.11
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.11
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.09
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.09
PLN02676	487	polyamine oxidase	99.08
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.06
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.05
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.05
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.04
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.04
PLN02487	569	zeta-carotene desaturase	99.03
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.03
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.03
PLN02529	738	lysine-specific histone demethylase 1	99.02
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.02
PLN02976	1713	amine oxidase	99.02
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.99
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.99
PLN03000	881	amine oxidase	98.99
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.99
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.98
PRK06370	463	mercuric reductase; Validated	98.97
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.97
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.96
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.94
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.94
PRK06175	433	L-aspartate oxidase; Provisional	98.94
PRK09897	534	hypothetical protein; Provisional	98.94
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.93
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.92
PRK07804	541	L-aspartate oxidase; Provisional	98.91
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.91
PRK08401	466	L-aspartate oxidase; Provisional	98.91
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.89
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.89
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.88
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.88
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.88
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.88
PRK06116	450	glutathione reductase; Validated	98.87
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.87
PRK10262	321	thioredoxin reductase; Provisional	98.87
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
KOG2853	509	consensus Possible oxidoreductase [General functio	98.86
PRK14694	468	putative mercuric reductase; Provisional	98.84
PRK07121	492	hypothetical protein; Validated	98.83
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.82
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.81
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.8
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.8
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.78
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.78
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.77
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.77
PRK08275	554	putative oxidoreductase; Provisional	98.77
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.75
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.75
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.74
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.74
PRK08071	510	L-aspartate oxidase; Provisional	98.73
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.72
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.72
PLN02507	499	glutathione reductase	98.72
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.7
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.7
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.7
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PRK13748	561	putative mercuric reductase; Provisional	98.69
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PLN02815	594	L-aspartate oxidase	98.68
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.67
PRK14727	479	putative mercuric reductase; Provisional	98.66
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.66
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.64
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.62
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.62
TIGR02053	463	MerA mercuric reductase. This model represents the	98.61
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.61
PRK09077	536	L-aspartate oxidase; Provisional	98.6
PTZ00058	561	glutathione reductase; Provisional	98.6
PRK07512	513	L-aspartate oxidase; Provisional	98.6
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.6
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.59
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.59
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.58
PRK12839	572	hypothetical protein; Provisional	98.56
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.56
PTZ00052	499	thioredoxin reductase; Provisional	98.56
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.55
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.55
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.55
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.55
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.53
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.52
PRK07395	553	L-aspartate oxidase; Provisional	98.51
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.51
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.51
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.51
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.51
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.5
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.49
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.49
PLN02546	558	glutathione reductase	98.49
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.48
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.47
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.46
PRK07208	479	hypothetical protein; Provisional	98.46
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.46
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.46
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.45
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.44
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.42
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.42
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.42
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.41
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.4
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.39
PRK07846	451	mycothione reductase; Reviewed	98.38
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.38
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.38
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.37
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.33
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.3
KOG2852	380	consensus Possible oxidoreductase [General functio	98.29
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.29
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.28
PRK07846	451	mycothione reductase; Reviewed	98.28
PRK06116	450	glutathione reductase; Validated	98.27
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.26
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.26
COG3573	552	Predicted oxidoreductase [General function predict	98.25
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.25
COG3349	485	Uncharacterized conserved protein [Function unknow	98.25
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.2
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.19
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.19
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.18
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.18
PLN02507	499	glutathione reductase	98.17
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.16
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.16
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.15
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.14
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.13
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.12
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.11
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.09
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.09
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.09
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.09
PRK06370	463	mercuric reductase; Validated	98.08
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.07
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.06
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.06
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.05
TIGR02053	463	MerA mercuric reductase. This model represents the	98.05
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.02
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.02
PLN02852	491	ferredoxin-NADP+ reductase	98.02
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.02
PRK12831	464	putative oxidoreductase; Provisional	98.01
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.01
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.99
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.98
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.96
PRK02106	560	choline dehydrogenase; Validated	97.96
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.95
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.94
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.93
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.92
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.9
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.89
PTZ00052	499	thioredoxin reductase; Provisional	97.89
PTZ00188	506	adrenodoxin reductase; Provisional	97.89
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.89
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.89
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.88
PRK14694	468	putative mercuric reductase; Provisional	97.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.87
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.86
PRK14727	479	putative mercuric reductase; Provisional	97.86
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.84
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.83
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.83
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.82
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.82
PTZ00058	561	glutathione reductase; Provisional	97.8
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.78
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.77
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.77
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.74
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.74
PRK13748	561	putative mercuric reductase; Provisional	97.73
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.72
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.72
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.69
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.66
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.64
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.63
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.63
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.63
PLN02546	558	glutathione reductase	97.58
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.58
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.55
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.54
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.53
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.52
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.44
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.41
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.4
PLN02785	587	Protein HOTHEAD	97.4
PRK13984	604	putative oxidoreductase; Provisional	97.36
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.33
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.29
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.28
PRK10262	321	thioredoxin reductase; Provisional	97.28
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	97.27
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.21
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.16
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.1
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.07
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.05
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.04
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.02
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.99
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.98
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.97
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.87
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.86
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.82
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.81
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.74
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.71
PRK12831	464	putative oxidoreductase; Provisional	96.68
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.6
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.59
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.55
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.54
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.47
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.37
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.23
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.22
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.22
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.09
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.07
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.03
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.96
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.93
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.92
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.88
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.84
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.81
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.81
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.81
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.73
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.6
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.59
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.57
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.53
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.52
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.52
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.51
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.44
PRK04148	134	hypothetical protein; Provisional	95.44
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.41
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.4
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.38
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.36
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.34
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.31
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.27
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.23
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.16
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.13
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.12
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.12
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.11
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.06
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.03
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.01
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.95
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	94.94
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.92
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.88
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.87
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.84
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.81
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.72
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.72
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.7
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.69
PRK07417	279	arogenate dehydrogenase; Reviewed	94.63
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.62
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.57
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.56
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.55
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.53
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.53
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.45
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.43
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.29
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.28
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.27
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.2
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.15
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.14
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.13
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.03
PRK06223	307	malate dehydrogenase; Reviewed	94.03
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.99
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	93.98
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.98
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.97
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.93
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.9
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.8
PRK08328	231	hypothetical protein; Provisional	93.75
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.74
PRK07208	479	hypothetical protein; Provisional	93.67
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.61
PRK05442	326	malate dehydrogenase; Provisional	93.58
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.58
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.58
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.5
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.43
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.42
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	93.42
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.4
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.39
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.37
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.36
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.34
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.3
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.27
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.25
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.23
PTZ00117	319	malate dehydrogenase; Provisional	93.23
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.22
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.21
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.17
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.16
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.14
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.08
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.06
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.0
PRK09496	453	trkA potassium transporter peripheral membrane com	92.99
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.97
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.97
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.96
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.92
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	92.9
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	92.86
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	92.86
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.84
PRK08223	287	hypothetical protein; Validated	92.83
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.75
PRK10669	558	putative cation:proton antiport protein; Provision	92.73
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.63
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.63
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	92.49
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.49

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-47  Score=355.31  Aligned_cols=359  Identities=26%  Similarity=0.397  Sum_probs=279.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+|+++|+.|++.|++|+|+||++.+...++++.+++++++.|+.+|+.+.+...+.+...+.+++. .+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~-~g~   79 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDD-KGT   79 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcC-CCC
Confidence            3899999999999999999999999999999998888889999999999999999999988877777777777654 333


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                      ......+..     ....+.++|..|.+.|.+.+++.+++++++|++++.+++++++++.+|+++++|+||+|||.+|.+
T Consensus        80 ~~~~~~~~~-----~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         80 LLNKVKLKS-----NTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             EEeeccccc-----CCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence            322222211     223457999999999999988889999999999998888899999999999999999999999999


Q ss_pred             HhhhCCCC-CcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC-cccccChHHHHHH
Q 015303          165 AKWLGFKN-PAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD-KELEDHSAELKQF  242 (409)
Q Consensus       165 r~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (409)
                      |+.++... ..+.+..++.+.+...... .......++..++.++++|..++..+|.+........ .....    ..+.
T Consensus       155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  229 (373)
T PRK06753        155 RQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSF----GKPH  229 (373)
T ss_pred             HHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccc----cHHH
Confidence            99986543 3345566666654432211 1223344555566788999999988887765433221 11111    2345


Q ss_pred             HHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHH
Q 015303          243 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN  322 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~  322 (409)
                      +.+.+..+++.+..+++......+..++.....+    .++|..+|++|||||||.++|+.|||+|+||+||..|++.|.
T Consensus       230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~  305 (373)
T PRK06753        230 LQAYFNHYPNEVREILDKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN  305 (373)
T ss_pred             HHHHHhcCChHHHHHHHhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence            6666778888888888765433333333333222    236788999999999999999999999999999999999995


Q ss_pred             HHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhhhh
Q 015303          323 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLL  395 (409)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  395 (409)
                      .    .             ...++|+.|++.|++++..+++.+..+..+++...+....+|+.+++.......
T Consensus       306 ~----~-------------~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~  361 (373)
T PRK06753        306 A----Y-------------DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALA  361 (373)
T ss_pred             h----c-------------cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCChhhh
Confidence            4    1             457899999999999999999999999999999898999999999987644443

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=4.7e-47  Score=354.93  Aligned_cols=359  Identities=25%  Similarity=0.302  Sum_probs=270.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC-CCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+||+||||||+|+++|+.|++.|++|+|+|+. ......++++.+++.+++.|+++|+.+.+...+........++...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            479999999999999999999999999999998 4556677999999999999999999888887776555555544322


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec-CCcEEeccEEEecC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA-DGTILKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~ad~vV~Ad  158 (409)
                      . .  .+.++..........+++.+..|.+.|.+.+   ++++++++++|+.++.+++.+.+++. +|++++||+||+||
T Consensus        82 ~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD  158 (387)
T COG0654          82 R-R--LLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD  158 (387)
T ss_pred             c-e--eEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence            2 1  2223222222245567899999999999877   34899999999999999999889988 99999999999999


Q ss_pred             CCchHHHhhhCCC-CCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccCh
Q 015303          159 GVNSIVAKWLGFK-NPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS  236 (409)
Q Consensus       159 G~~S~vr~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (409)
                      |.+|.+|+.++.. ... .+.+..+...+..+.++  ......++.+...+.++|++++....++.............+.
T Consensus       159 G~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T COG0654         159 GANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPH--EGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD  236 (387)
T ss_pred             CCchHHHHhcCCCCccCCCCCceEEEEEeecCCCC--CCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence            9999999999833 333 35555555555554222  3334445555557889999965544444443333333355666


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      +.+..++.+.+....+ ..   ...........+..     ...+.+|..+|++|+|||||+++|++|||+|+|++||..
T Consensus       237 ~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~pl~-----~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~  307 (387)
T COG0654         237 EEFLRELQRRLGERDP-LG---RVTLVSSRSAFPLS-----LRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAA  307 (387)
T ss_pred             HHHHHHHHHhcCcccc-cc---eEEEcccccccccc-----chhhhheecCcEEEEeeccccCCCccccchhhhhhhHHH
Confidence            6666666665543222 11   01111222222322     234447788999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      |+++|.++.+..            ++ .++|+.|+++|++++..++..+..+...+....+...++|+..++.
T Consensus       308 La~~L~~~~~~~------------~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~  367 (387)
T COG0654         308 LAEALAAAPRPG------------AD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRL  367 (387)
T ss_pred             HHHHHHHHhhcC------------cc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHh
Confidence            999999988742            12 8999999999999999999999999999999999999999999985

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-46  Score=351.99  Aligned_cols=363  Identities=18%  Similarity=0.224  Sum_probs=269.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.+++++++.|+++|+++.+.+.+.+...+.+++. .+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~   79 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR   79 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence            3899999999999999999999999999999988777778888999999999999999999888877777777653 344


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ....++..............+.|..|.+.|.+.+++ ++++++++|+++++++++++|++++|+++++|+||+|||.+|.
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588         80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            333343332221112234579999999999887654 8999999999999988899999999999999999999999999


Q ss_pred             HHhhhCCCCCc---ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHH
Q 015303          164 VAKWLGFKNPA---FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK  240 (409)
Q Consensus       164 vr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (409)
                      +|+.+......   +.+...+......... .....+..+.+++..+.++|.+++...+++....+...  ...+.+...
T Consensus       160 vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~  236 (391)
T PRK07588        160 VRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDN--PPLTPAEEK  236 (391)
T ss_pred             chhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcc--ccCCHHHHH
Confidence            99986322221   2222222221211111 11223455666777889999988876555554433221  234556677


Q ss_pred             HHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHH
Q 015303          241 QFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLAR  319 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~  319 (409)
                      +.+.+.+..+.+....+++..... .+...+.     .....++|..+|++|+|||||.++|+.|||+|+||+||..|++
T Consensus       237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~  311 (391)
T PRK07588        237 QLLRDQFGDVGWETPDILAALDDVEDLYFDVV-----SQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAG  311 (391)
T ss_pred             HHHHHHhccCCccHHHHHHhhhcccchheeee-----eeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHH
Confidence            888888877666554544432211 1111111     1112347889999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303          320 CINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL  391 (409)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  391 (409)
                      .|.....               ....+|+.|++.|++++..++..++.+..+++..++....+|+..++.+-
T Consensus       312 ~L~~~~~---------------~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~  368 (391)
T PRK07588        312 ELARAGG---------------DHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN  368 (391)
T ss_pred             HHHhccC---------------CHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc
Confidence            9976211               45789999999999999999999999999999999999999999988543

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=4.5e-46  Score=350.57  Aligned_cols=366  Identities=20%  Similarity=0.227  Sum_probs=265.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++++.+.+.......+.+.....
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            58999999999999999999999999999999888888999999999999999999999998766655444443322211


Q ss_pred             cccccccccc-cccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec---CCcEEeccEEEec
Q 015303           85 PSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA---DGTILKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~~~ad~vV~A  157 (409)
                      .......... .......+..+.|..|.+.|.+.+   ++++++++++|++++++++++.+++.   +++++++|+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA  162 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC  162 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence            1111111111 011122334689999999999876   36899999999999988888888773   3457999999999


Q ss_pred             CCCchHHHhhhCCCCCcccceeeEEEeecCCCCCC-------CCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303          158 DGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHG-------FEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      ||.+|.+|+.++...+.+.+..++++.+.......       .......+++++..+.++|++++..++++.+..+....
T Consensus       163 DG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  242 (400)
T PRK06475        163 DGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPG  242 (400)
T ss_pred             CCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCc
Confidence            99999999999776666777888887765432110       11224556677778899999987665555443322211


Q ss_pred             ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303          231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a  310 (409)
                      . ........+++.+.+..|.+.+..+++...  ....+++....+.    +.|..+|++|||||||.++|+.|||+|+|
T Consensus       243 ~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~a  315 (400)
T PRK06475        243 E-VWSKTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMA  315 (400)
T ss_pred             c-cCCCCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHH
Confidence            1 111111245677778899999888887653  3344555443322    13457899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      |+||..|+++|..    .             ....+|+.|++.|++++..++..++....+++. ++.....|+..++..
T Consensus       316 ieDa~~La~~L~~----~-------------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~-~~~~~~~r~~~~~~~  377 (400)
T PRK06475        316 IEDAAALAEALDS----D-------------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA-TGIFALGRNMLFAIR  377 (400)
T ss_pred             HHHHHHHHHHHhc----C-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhc
Confidence            9999999999963    1             356899999999999999999999755544444 445677798888754


Q ss_pred             hhhhh
Q 015303          391 LVGLL  395 (409)
Q Consensus       391 ~~~~~  395 (409)
                      .+..+
T Consensus       378 ~~~~~  382 (400)
T PRK06475        378 SPESF  382 (400)
T ss_pred             Chhhh
Confidence            44333

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=2.5e-46  Score=353.14  Aligned_cols=362  Identities=17%  Similarity=0.192  Sum_probs=259.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC-CCcC----CcccceeccccHHHHHHHcCchhHHHhc-cccccc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLR----VTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRS   74 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~-~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~   74 (409)
                      ||..+||+||||||+|+++|+.|+++|++|+|+|+. +.+.    ...++..++++++++|+++|+++.+.+. ..+...
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   80 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA   80 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence            677899999999999999999999999999999996 3221    2357788999999999999999999764 566666


Q ss_pred             eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEec
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKT  151 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a  151 (409)
                      +.+++...   .....+...........+.+.+..|.+.|.+.+   ++++++++++|++++.+++.+.|++.+|++++|
T Consensus        81 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a  157 (405)
T PRK08850         81 MEVWEQDS---FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA  157 (405)
T ss_pred             EEEEeCCC---CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence            66654321   112222221111122345678888888888765   468999999999999888889999999999999


Q ss_pred             cEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcC
Q 015303          152 KVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQD  229 (409)
Q Consensus       152 d~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~  229 (409)
                      |+||+|||.+|.+|+.++...... ++..++.+.+....++  ......++.+++.+.++|+.++. +.++.........
T Consensus       158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~  235 (405)
T PRK08850        158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAE  235 (405)
T ss_pred             CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHH
Confidence            999999999999999998775432 4556666666543322  22233455665678889998653 3333332221111


Q ss_pred             cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303          230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA  309 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~  309 (409)
                      .....+.+++.+.+.+.+..   .+.. ++.  ......+|...     ...++|..+|++|+|||||.++|+.|||+|+
T Consensus       236 ~~~~~~~~~~~~~l~~~~~~---~~~~-~~~--~~~~~~~pl~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~  304 (405)
T PRK08850        236 ALLAMSDEQFNKALTAEFDN---RLGL-CEV--VGERQAFPLKM-----RYARDFVRERVALVGDAAHTIHPLAGQGVNL  304 (405)
T ss_pred             HHHcCCHHHHHHHHHHHHhh---hhCc-EEE--cccccEEecce-----eeccccccCcEEEEEhhhhcCCccccccHHH
Confidence            11233444555555554321   1100 000  01111222221     1234788999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhh-ccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          310 ALEDGIVLARCINEALK-TKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       310 al~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      ||+||..|+++|..... +.++           ....+|+.|+++|++++..++..++.+.++++..++...++|+.++.
T Consensus       305 ai~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~  373 (405)
T PRK08850        305 GLLDAASLAQEILALWQQGRDI-----------GLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMS  373 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc-----------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            99999999999998764 2211           24689999999999999999999999999999999999999999987


Q ss_pred             H
Q 015303          389 S  389 (409)
Q Consensus       389 ~  389 (409)
                      .
T Consensus       374 ~  374 (405)
T PRK08850        374 L  374 (405)
T ss_pred             H
Confidence            4

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=2.6e-46  Score=351.99  Aligned_cols=359  Identities=17%  Similarity=0.196  Sum_probs=252.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc------ccceeccccHHHHHHHcCchhHHHhc-cccccce
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT------GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSI   75 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~   75 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+|+.+.+...      .++..+++.++++|+++|+++.+.+. ..+....
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~   81 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM   81 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence            3589999999999999999999999999999998875421      25567899999999999999998765 4566666


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTK  152 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  152 (409)
                      .+++...   .....+...........+.+.|..|.+.|.+.+   ++++++++++|++++++++.+++++.+|++++||
T Consensus        82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         82 EVWDKDS---FGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             EEEeCCC---CceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            6654321   112222221111122346899999999998866   3689999999999998888999999999999999


Q ss_pred             EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcCc
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQDK  230 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~  230 (409)
                      +||+|||.+|.+|+.++.+.... +...++.+.+....++. ......|.+++ +++++|..++. ..++.....+....
T Consensus       159 lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~  236 (400)
T PRK08013        159 LVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHD-AVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPEEAQR  236 (400)
T ss_pred             EEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCC-CEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHHHHHH
Confidence            99999999999999998875543 34444454444333221 12233444444 77888997754 33333322211111


Q ss_pred             ccccChHHHHHHHHHHhCCCChHHHHHHHcCCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303          231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA  309 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~  309 (409)
                      ....+.+.+.+.+...+   .+.    +..... .....++....     ..++|..+||+|+|||||.++|+.|||+|+
T Consensus       237 ~~~~~~~~~~~~l~~~~---~~~----l~~~~~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~  304 (400)
T PRK08013        237 MQQAPEEEFNRALAIAF---DNR----LGLCELESERQVFPLTGR-----YARQFAAHRLALVGDAAHTIHPLAGQGVNL  304 (400)
T ss_pred             HHcCCHHHHHHHHHHHH---hHh----hCceEecCCccEEeccee-----ecccccCCcEEEEechhhcCCccccCchhh
Confidence            11223333333333221   111    110000 11112222221     245789999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          310 ALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       310 al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      ||+||..|+++|...+... ++           ....+|++|+++|++++..++..++.+..++++.++...++|+++++
T Consensus       305 gi~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~  373 (400)
T PRK08013        305 GFMDAAELIAELRRLHRQGKDI-----------GQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLK  373 (400)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            9999999999999876432 11           12357999999999999999999999999999999999999999887


Q ss_pred             H
Q 015303          389 S  389 (409)
Q Consensus       389 ~  389 (409)
                      .
T Consensus       374 ~  374 (400)
T PRK08013        374 L  374 (400)
T ss_pred             H
Confidence            4

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.1e-46  Score=331.52  Aligned_cols=399  Identities=38%  Similarity=0.547  Sum_probs=311.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      -+|+|||||++||++|++|+|.|++|+|+|++..++..+.++.+.-+++++|+.+|+.+.+.+.+.+..+....+..++.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~   82 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGK   82 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCCC
Confidence            48999999999999999999999999999999999988999999999999999999999999999999887777777777


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCC------eEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSS------QVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ....+.+....   .+...++.|..+.+.|.++.+..+|+|+.      ....++..+....+++.+|.++++|++|+||
T Consensus        83 ~~~~~~~~~~~---~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCD  159 (420)
T KOG2614|consen   83 EVSRILYGEPD---EYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCD  159 (420)
T ss_pred             eeEecccCCch---HHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcC
Confidence            66677666443   22334567777778888877776777764      4555666666678899999999999999999


Q ss_pred             CCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHH
Q 015303          159 GVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE  238 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (409)
                      |++|.||++++...|.+.+.+++++...++..+++......+.+++.+++..|.....++|.....-.........+++.
T Consensus       160 Ga~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~  239 (420)
T KOG2614|consen  160 GAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEK  239 (420)
T ss_pred             chHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHH
Confidence            99999999999988999999999998887777766444444445555555555555556666532222222223445666


Q ss_pred             HHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHH
Q 015303          239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA  318 (409)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la  318 (409)
                      ++....+....++..+.++++-...+.+...+...+.|++..+.....++|+|+|||||.|-|+.|||+|+|++|+..||
T Consensus       240 l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa  319 (420)
T KOG2614|consen  240 LKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLA  319 (420)
T ss_pred             HhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHH
Confidence            67677777778889999999998888888888999999988888778889999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCCch--hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchh--HHHHHHHHHHHHhhhh
Q 015303          319 RCINEALKTKQGVGEEDE--EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKI--LNFLRDKILASFLVGL  394 (409)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~  394 (409)
                      ++|.++.......+..-+  ..+....+.++..|...|..+.-.....+.....+-+...|+  .-++|+..+...+.+.
T Consensus       320 ~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l~~~  399 (420)
T KOG2614|consen  320 ECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEALERL  399 (420)
T ss_pred             HHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHHHHH
Confidence            999998762111111111  122333788999999999998888888887777777888887  6677788887777777


Q ss_pred             hcccccCCCCcc
Q 015303          395 LLKKADFDCGNL  406 (409)
Q Consensus       395 ~~~~~~~~~g~~  406 (409)
                      ..+...+.+|-.
T Consensus       400 ~~~~~~~~~g~~  411 (420)
T KOG2614|consen  400 GIKKKILNDGSF  411 (420)
T ss_pred             Hhhhhhhcccch
Confidence            766666666543

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.6e-45  Score=347.59  Aligned_cols=379  Identities=24%  Similarity=0.307  Sum_probs=278.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+++.||+||||||+|+++|+.|++.|++|+|+||.+.+...++++.+++++.++|+++|+++.+.+.+.....+.+++.
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   80 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA   80 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence            77889999999999999999999999999999999998888889999999999999999999998877776777766654


Q ss_pred             CCCCccccccccccc-ccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           81 ISGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                      ..+.....++..... .........+.|..|.+.|.+.+.   +++++++++|++++.+++++.+++.+|++++||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  160 (396)
T PRK08163         81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG  160 (396)
T ss_pred             CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence            444443333322110 111223457899999999998763   4789999999999988888999999998999999999


Q ss_pred             cCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCC--CCceeeeecCCcEEEEEecCCCeEE-EEEEecCCCcCcccc
Q 015303          157 CDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGF--EPNFLQFFGKGLRSGFIPCDDQTIY-WFFTWTSSSQDKELE  233 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~  233 (409)
                      |||.+|.+|+.+....+.+.+...+.+.+.....+..  ......+.+++.+++++|..++..+ +++.+..+.... . 
T Consensus       161 AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~-  238 (396)
T PRK08163        161 CDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEE-W-  238 (396)
T ss_pred             CCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcc-c-
Confidence            9999999999873224445566666666553322111  1223445566777888999877543 333332221111 0 


Q ss_pred             cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303          234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~  313 (409)
                      .......+.+.+.+..+.+.+..+++...  .+..+......|    .++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D  312 (396)
T PRK08163        239 GVKDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMALED  312 (396)
T ss_pred             ccCCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHHHHH
Confidence            01111245677888888888888876532  222222222222    347788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhh
Q 015303          314 GIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG  393 (409)
Q Consensus       314 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~  393 (409)
                      |..|++.|...  .             +....+|+.|+++|++++..++..++.+..+++.. ....++|+..+....+.
T Consensus       313 a~~La~~L~~~--~-------------~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~~~~  376 (396)
T PRK08163        313 AVTLGKALEGC--D-------------GDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGRTQE  376 (396)
T ss_pred             HHHHHHHHHhc--c-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhccChh
Confidence            99999999752  1             25688999999999999999999999999998866 46888899888765555


Q ss_pred             hhcccccCCC
Q 015303          394 LLLKKADFDC  403 (409)
Q Consensus       394 ~~~~~~~~~~  403 (409)
                      .......++.
T Consensus       377 ~~~~~~~~~~  386 (396)
T PRK08163        377 QFYDALEWLY  386 (396)
T ss_pred             hhhhhcCccc
Confidence            4444444443

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=2.9e-45  Score=340.48  Aligned_cols=359  Identities=16%  Similarity=0.128  Sum_probs=257.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+++++++.|+++|+++.+.+.+.......+++. .+.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~-~g~   80 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR-DGN   80 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC-CCC
Confidence            3899999999999999999999999999999998888888899999999999999999999887777777776653 333


Q ss_pred             cccccccc-cccccCCccceeccHHHHHHHHHhhC-CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLK-VQGKYGEHEMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      .+...... ..+.........+.|..|.+.|.+.. .+++++++++|++++++++.+++++.+|+++++|+||+|||.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S  160 (372)
T PRK05868         81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS  160 (372)
T ss_pred             EEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence            22211110 01111112234678999999887765 46899999999999988888999999999999999999999999


Q ss_pred             HHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceee-eecCCcEEEEEecCCCeE-EEEEEecCCCcCcccccChHHH
Q 015303          163 IVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQ-FFGKGLRSGFIPCDDQTI-YWFFTWTSSSQDKELEDHSAEL  239 (409)
Q Consensus       163 ~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  239 (409)
                      .+|+.+...... ......+..++..+..... ..+.. +++++.++.++|..++.. ..++.+....... .....+..
T Consensus       161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  238 (372)
T PRK05868        161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQ  238 (372)
T ss_pred             hHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc-ccCChHHH
Confidence            999998433322 2222222333333332221 22333 457777888899886533 3344443322111 11223445


Q ss_pred             HHHHHHHhC--CCC-hHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          240 KQFVLGKLH--DLP-AQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       240 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      ++.+.+.+.  .|. +.+.+.+...  ..+ .++...    ....++|..+||+|||||||.++|+.|||+|+||+||..
T Consensus       239 ~~~l~~~f~~~~w~~~~l~~~~~~~--~~~-~~~~~~----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~  311 (372)
T PRK05868        239 FAELQRRMAEDGWVRAQLLHYMRSA--PDF-YFDEMS----QILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYI  311 (372)
T ss_pred             HHHHHHHHhhCCCchHHHHhhcccC--Cce-eeccce----EEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHH
Confidence            677777776  344 3333333211  111 121111    122348899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      ||++|...  .             ++.+++|+.|++.++++....+.........+.+.+.+..++|+..+.
T Consensus       312 La~~L~~~--~-------------~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~  368 (372)
T PRK05868        312 LAGELKAA--G-------------DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT  368 (372)
T ss_pred             HHHHHHhc--C-------------CCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence            99999762  1             257899999999999999999999999999999999999999876653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=8.2e-46  Score=345.50  Aligned_cols=346  Identities=18%  Similarity=0.181  Sum_probs=249.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc----CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL----RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..    ...++++.++++++++|+++|+++.+.....+...+.+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            69999999999999999999999999999987532    23478999999999999999999998877777777777654


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                      . +.....+..  ..  .....+.+.|..|.+.|.+.+.   +++++++++++++.++++.+++++.++ +++||+||+|
T Consensus        82 ~-g~~~~~~~~--~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgA  155 (374)
T PRK06617         82 K-ASEILDLRN--DA--DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIIC  155 (374)
T ss_pred             C-CceEEEecC--CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEe
Confidence            3 332222221  11  1223578999999999998763   478999999999999888999999876 7999999999


Q ss_pred             CCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcCcccccCh
Q 015303          158 DGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQDKELEDHS  236 (409)
Q Consensus       158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (409)
                      ||.+|.+|+.++........+.++.+.+....++. ...++.|...| .++++|++++. ..++.....+........+.
T Consensus       156 DG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~  233 (374)
T PRK06617        156 DGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHE-NCAMEHFLPLG-PFALLPLKDQYASSVIWSTSSDQAALIVNLPV  233 (374)
T ss_pred             CCCCchhHHhcCCCcccccCCeEEEEEEeccCCCC-CEEEEEecCCC-CEEEeECCCCCeEEEEEeCCHHHHHHHHcCCH
Confidence            99999999998766533333566666555433221 22344554555 58889998875 32332222111111112222


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      +.+.+.+...+   .+.+..+   ........++....     ..++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus       234 ~~~~~~~~~~~---~~~~~~i---~~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~  302 (374)
T PRK06617        234 EEVRFLTQRNA---GNSLGKI---TIDSEISSFPLKAR-----IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEI  302 (374)
T ss_pred             HHHHHHHHHhh---chhcCce---eeccceeEEEeeee-----eccceecCCEEEEEcccccCCCCccccHHHHHHHHHH
Confidence            23322222211   1111111   01112333343332     2347889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      |+++|..                    ..+|++|+++|++++..++..+..+.++++...+...++|+.++..
T Consensus       303 La~~L~~--------------------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~  355 (374)
T PRK06617        303 LSMIVSN--------------------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKV  355 (374)
T ss_pred             HHHHHcC--------------------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9998832                    1579999999999999999999999999999999999999999874

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=2.9e-45  Score=348.03  Aligned_cols=366  Identities=18%  Similarity=0.200  Sum_probs=260.3

Q ss_pred             ccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCcCC------------cccceeccccHHHHHHHcCchhHHHhc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESLRV------------TGFAFTVWTNAWKALDAVGIGNSLRQQ   68 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~~~------------~~~~~~~~~~~~~~l~~~gl~~~~~~~   68 (409)
                      |||+||||||+|+++|+.|++    +|++|+|||+++.+..            .++++.+++.++++|+.+|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999999    8999999999654432            357899999999999999999999765


Q ss_pred             c-ccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---C--CceEEeCCeEEEEEEe-------
Q 015303           69 H-QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---P--SGTIRYSSQVVSIEES-------  135 (409)
Q Consensus        69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~--~~~i~~~~~v~~i~~~-------  135 (409)
                      . .+...+.+++.. +.  ....+.... ......+.+.+..|.+.|.+.+   +  +++++++++|++++.+       
T Consensus        81 ~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~  156 (437)
T TIGR01989        81 RIQPFGRMQVWDGC-SL--ALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDN  156 (437)
T ss_pred             cCCceeeEEEecCC-CC--ceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCC
Confidence            3 455556555432 21  123333211 1123356789999998888765   3  4799999999999752       


Q ss_pred             CCeEEEEecCCcEEeccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCC
Q 015303          136 GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDD  214 (409)
Q Consensus       136 ~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  214 (409)
                      ++.++|++.+|++++||+||+|||.+|.+|+.++...... +.+.++.+.+...........++.|.. ++.++++|+++
T Consensus       157 ~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~-~g~~~~lPl~~  235 (437)
T TIGR01989       157 SNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP-TGPIALLPLPD  235 (437)
T ss_pred             CCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC-CCCEEEeECCC
Confidence            4568999999999999999999999999999998876654 344455555554332222334455554 44688899998


Q ss_pred             CeEEEEEEecCCCcCcccccChHHHHHHHHHHhC----CCCh------HHHHHHH--------------------cCCCC
Q 015303          215 QTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH----DLPA------QVKAVIE--------------------KTPLD  264 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~--------------------~~~~~  264 (409)
                      +..+|+..............+.+++.+.+.+.+.    .++.      .+..+.+                    .....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T TIGR01989       236 NNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDK  315 (437)
T ss_pred             CCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecc
Confidence            8766655543332222234556666666655551    1100      0000000                    00000


Q ss_pred             ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhH
Q 015303          265 SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRV  343 (409)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~  343 (409)
                      ....+++..     ..+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|..+.+.. ++           ..
T Consensus       316 ~~~~~~~~~-----~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~-----------~~  379 (437)
T TIGR01989       316 SRAAFPLGL-----GHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADI-----------GS  379 (437)
T ss_pred             cceeEEecc-----cchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCh-----------hH
Confidence            001122211     12347889999999999999999999999999999999999999887542 11           22


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303          344 EMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL  391 (409)
Q Consensus       344 ~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  391 (409)
                      ..+|+.|+++|++++..++..++.+.++++...+...++|++++..+.
T Consensus       380 ~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~  427 (437)
T TIGR01989       380 ISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTN  427 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999999999998543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=3e-44  Score=336.55  Aligned_cols=363  Identities=23%  Similarity=0.324  Sum_probs=269.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |.+..||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.++.+++++++.|+++|+.+.+.+.+.+.....+++.
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP   80 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence            66778999999999999999999999999999999988888889999999999999999999998887777777666643


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .+..+..++..............+.|..|.+.|.+.+  .+++++++++|++++.+++.+.+++.+|+++++|+||+||
T Consensus        81 -~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         81 -DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             -CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence             3333322222111111112234688999999998866  3689999999999998888899999999999999999999


Q ss_pred             CCchHHHhhh-CCC-CCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccCh
Q 015303          159 GVNSIVAKWL-GFK-NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS  236 (409)
Q Consensus       159 G~~S~vr~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (409)
                      |.+|.+|+.+ +.. .+.+.+..++.+.+..+.  . ......+.+++..+.++|.+++..++++....+..   ...+.
T Consensus       160 G~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~  233 (375)
T PRK06847        160 GLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--E-VDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDN---PRIEP  233 (375)
T ss_pred             CCCcchhhHhcCCCCCceeccceEEEEEecCCC--C-ccceEEEeCCCcEEEEEcCCCCeEEEEEeccCccc---ccCCh
Confidence            9999999987 443 344556666665544322  1 12235566777788899998887655544332221   23345


Q ss_pred             HHHHHHHHHHhCCCCh-HHHHHHHcCC-CCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          237 AELKQFVLGKLHDLPA-QVKAVIEKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                      +.+.+.+.+.+..+++ ....+.+... ...+...+.....+    ..+|..+|++|+|||||.++|++|||+|+||+||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA  309 (375)
T PRK06847        234 DTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLV----PAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA  309 (375)
T ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccC----CCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence            5566777777777765 3444443221 12222333332221    1257889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCch---hHHHHHHHHHHHH
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK---ILNFLRDKILASF  390 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~---~~~~~r~~~~~~~  390 (409)
                      ..|++.|.+.                +...++|+.|+++|++++..++..++.+...++...+   ....+|++++..+
T Consensus       310 ~~La~~L~~~----------------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (375)
T PRK06847        310 IVLAEELARH----------------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA  372 (375)
T ss_pred             HHHHHHHhhC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence            9999999761                2568899999999999999999999999999876666   6667788777643

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=1.2e-44  Score=352.39  Aligned_cols=359  Identities=23%  Similarity=0.287  Sum_probs=260.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+.+++...+.+.....+++. .
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~   87 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-K   87 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-C
Confidence            358999999999999999999999999999999998888889999999999999999999999887777777766643 3


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec--CC--cEEeccEEE
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DG--TILKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~~~ad~vV  155 (409)
                      +.....+...............+.+..+.+.|.+.+   ++++++++++|++++++++++++++.  +|  .+++||+||
T Consensus        88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence            433333332111111122234678889998888754   47899999999999999999888886  45  379999999


Q ss_pred             ecCCCchHHHhhhCCCCCcccceeeEEE-eecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303          156 GCDGVNSIVAKWLGFKNPAFVGRSAIRG-YSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED  234 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      +|||.+|.+|+.++...........+.. .+..............+++++..+.++|.+++...|.+...+.+... ...
T Consensus       168 gADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~  246 (538)
T PRK06183        168 GCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLA  246 (538)
T ss_pred             ecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcC
Confidence            9999999999999876543322222221 11121111112234455667777888999988877777664433211 112


Q ss_pred             ChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                      +.+.    +.+.+..+...       .....+..... +.. ....+++|..+||+|+|||||.++|+.|||+|+||+||
T Consensus       247 ~~~~----~~~~l~~~~~~-------~~~~~~~~~~~-~~~-~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA  313 (538)
T PRK06183        247 SPEN----VWRLLAPWGPT-------PDDAELIRHAV-YTF-HARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDA  313 (538)
T ss_pred             CHHH----HHHHHHhhCCC-------CcceEEEEEEe-eeE-ccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHH
Confidence            2232    33322222100       00011111111 111 11234578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      .+|+++|...+++.             ..+.+|+.|+++|++++..++..+..+..+++..++....+|+.+++.
T Consensus       314 ~~La~kLa~~~~g~-------------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~  375 (538)
T PRK06183        314 ANLAWKLAAVLRGR-------------AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRA  375 (538)
T ss_pred             HHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHh
Confidence            99999999877653             457899999999999999999999999999999999999999988864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=4.5e-45  Score=346.63  Aligned_cols=360  Identities=20%  Similarity=0.222  Sum_probs=252.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC--cccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV--TGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||++.+..  .++++.+++++++.|+++|+++++...+.+.....+.+.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            468999999999999999999999999999999987653  467889999999999999999998877767666666543


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEE
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVL  154 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~v  154 (409)
                      . +...  ..+...........+...+..|.+.|++++   ++++++++++|++++.+++.+.|++.++   .+++||+|
T Consensus        97 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlv  173 (415)
T PRK07364         97 D-YPGV--VKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLV  173 (415)
T ss_pred             C-CCce--eeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEE
Confidence            2 2111  122211111111223344456888887765   4689999999999998888888888643   36999999


Q ss_pred             EecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE  233 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |+|||.+|.+|+.++.....+ ....++...+.....+. ...+..|+..+ +++++|.+++...+++....+.......
T Consensus       174 IgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~  251 (415)
T PRK07364        174 VAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHN-DIAYERFWPSG-PFAILPLPGNRCQIVWTAPHAQAKALLA  251 (415)
T ss_pred             EEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence            999999999999997765433 22333344443332221 22233444544 5788999988765544322111111122


Q ss_pred             cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303          234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~  313 (409)
                      .+.+++.+.+.+.+..+...+.    .  ......++...     ...++|..+|++|||||||.++|++|||+|+||+|
T Consensus       252 ~~~~~~~~~l~~~~~~~~~~~~----~--~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D  320 (415)
T PRK07364        252 LPEAEFLAELQQRYGDQLGKLE----L--LGDRFLFPVQL-----MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRD  320 (415)
T ss_pred             CCHHHHHHHHHHHhhhhhcCce----e--cCCCceecchh-----hhhhhhcCCcEEEEecccccCCCcccccHhHHHHH
Confidence            3445556666655443222211    0  11112233221     12347889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          314 GIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       314 a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      |..|+++|...+.. .++           ....+|+.|++.|++++..++..++.+.+++..++++..++|+.+++.
T Consensus       321 A~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  386 (415)
T PRK07364        321 AAALAQVLQTAHQRGEDI-----------GSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWL  386 (415)
T ss_pred             HHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            99999999887642 211           124899999999999999999999999999999999999999998774

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=7.9e-45  Score=343.72  Aligned_cols=362  Identities=20%  Similarity=0.256  Sum_probs=258.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|+++|  ++|+|+||.+...  ..+++..++++++++|+++|+++.+...+.+.....+++.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            79999999999999999999996  9999999987643  3578999999999999999999999888877777776654


Q ss_pred             CCCCcccc--cccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           81 ISGKPSSE--RSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                      ..+.....  +.+...........+.++|..|.+.|.+.+.  +++++++++|++++.+++.+.+++.+|.+++||+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333         82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence            33222111  2222111111223457899999999988763  6899999999999998889999999998999999999


Q ss_pred             cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303          157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH  235 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.++...... ++...+.........+  ......++..+.+++++|.++++..+.+.............+
T Consensus       162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~  239 (403)
T PRK07333        162 ADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPH--GGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALD  239 (403)
T ss_pred             cCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCC--CCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCC
Confidence            9999999999998765332 3444444444433222  122233444445678899998876554332211110101123


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~  315 (409)
                      .+.+.+.+.+.+..+...+.    .  ......++...     ...++|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus       240 ~~~~~~~l~~~~~~~~~~~~----~--~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~  308 (403)
T PRK07333        240 DLVFEAELEQRFGHRLGELK----V--LGKRRAFPLGL-----TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA  308 (403)
T ss_pred             HHHHHHHHHHHhhhhcCceE----e--ccCccEeechh-----hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHH
Confidence            33344445444432211110    0  01111122211     1344788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      .|+++|...++.++          .....++|+.|+++|++++..++..++.+..+++..++....+|+.+++.
T Consensus       309 ~La~~L~~~~~~~~----------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  372 (403)
T PRK07333        309 ALAEVVVEAARLGL----------DIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGL  372 (403)
T ss_pred             HHHHHHHHHHhcCC----------CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            99999998875310          01357999999999999999999999999999999999999999988764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=6.9e-45  Score=343.73  Aligned_cols=359  Identities=19%  Similarity=0.257  Sum_probs=252.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--------CCcccceeccccHHHHHHHcCchhHHHhc-cccccc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--------RVTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRS   74 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~   74 (409)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+..        ....++..++++++++|+++|+++.+.+. ..+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            479999999999999999999999999999998631        12345678999999999999999988753 445566


Q ss_pred             eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTK  152 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  152 (409)
                      +.+++.. +.  ..+.+...........+.+.+..+.+.|.+.+.  +++++++++++++++++++++|++.+|.+++||
T Consensus        82 ~~~~~~~-~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         82 MQVWDGS-GT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             EEEEcCC-CC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            6665432 21  122332211111223457888899988887653  588999999999999888899999999889999


Q ss_pred             EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEE-EEEecCCCcC
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYW-FFTWTSSSQD  229 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~~~~~~~~  229 (409)
                      +||+|||.+|.+|+.++...+.. +...++...+....++. ...+.. +.++..++++|++++. ..| .+.|..+...
T Consensus       159 ~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~  236 (405)
T PRK05714        159 LVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQR-FTDDGPLAFLPLERDGDEHWCSIVWSTTPEE  236 (405)
T ss_pred             EEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEE-cCCCCCeEEeeCCCCCCCCeEEEEEECCHHH
Confidence            99999999999999997765432 22333333333322221 222333 3444578889986432 122 2333322211


Q ss_pred             --cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccch
Q 015303          230 --KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGG  307 (409)
Q Consensus       230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~  307 (409)
                        .....+.+.+.+++.+.+.   ..+.+++..   .....++....     ..++|..+||+|+|||||.++|+.|||+
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~rv~LlGDAAH~~~P~~GQG~  305 (405)
T PRK05714        237 AERLMALDDDAFCAALERAFE---GRLGEVLSA---DPRLCVPLRQR-----HAKRYVEPGLALIGDAAHTIHPLAGQGV  305 (405)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH---HHhCCceec---CCccEEeccee-----ehhhhccCCEEEEEeccccCCCcccccc
Confidence              1122344455555555432   222222211   12223333332     2457889999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHH
Q 015303          308 CAALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKI  386 (409)
Q Consensus       308 ~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~  386 (409)
                      |+||+||..|+++|..+.... ++           ....+|+.|++.|++++..++..++.+.++++..++...++|+..
T Consensus       306 n~al~DA~~La~~L~~~~~~g~~~-----------~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~  374 (405)
T PRK05714        306 NLGFLDAAVLAEVLLHAAERGERL-----------ADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTG  374 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            999999999999998765421 11           235899999999999999999999999999999999999999999


Q ss_pred             HHH
Q 015303          387 LAS  389 (409)
Q Consensus       387 ~~~  389 (409)
                      ++.
T Consensus       375 l~~  377 (405)
T PRK05714        375 LKL  377 (405)
T ss_pred             HHH
Confidence            873

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=2.7e-44  Score=340.24  Aligned_cols=357  Identities=21%  Similarity=0.282  Sum_probs=259.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccc----ccceeeee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQ----LRSIVATP   79 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~~~~~~~   79 (409)
                      .+|+||||||+||++|+.|+++| ++|+|+||.+.+...|.++.++|++++.|+++|+.+.+......    .....+.+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            37999999999999999999998 69999999998888899999999999999999998877654421    11111111


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                       ..+.....+....   ........+.|..|.+.|.+.+++..++++++|++++.+++++++++.+|.++++|+||+|||
T Consensus        81 -~~~~~~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG  156 (414)
T TIGR03219        81 -RNGSDASYLGATI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG  156 (414)
T ss_pred             -EecCccceeeeec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence             1111111111100   001122368999999999999887889999999999998888999999999999999999999


Q ss_pred             CchHHHhhhCC------CCCcccceeeEEEeecCCCC----------CCCCCceeeeecCCcEEEEEecCCCeEEEEEEe
Q 015303          160 VNSIVAKWLGF------KNPAFVGRSAIRGYSDFKGS----------HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTW  223 (409)
Q Consensus       160 ~~S~vr~~l~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  223 (409)
                      .+|.+|+.+..      ..+.+.+..++.+.+.....          .........+++.+.++.++|..++..++++.+
T Consensus       157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~  236 (414)
T TIGR03219       157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF  236 (414)
T ss_pred             ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence            99999998731      23445677777776542110          001112345667777888899988875443333


Q ss_pred             cCCCcC------cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcC
Q 015303          224 TSSSQD------KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH  297 (409)
Q Consensus       224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~  297 (409)
                      ......      .......+...+.+.+.+..|++.+.++++......  .+++....+    .++|..+||+|+|||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~----~~~w~~grv~LiGDAAH  310 (414)
T TIGR03219       237 ISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT--LWALHDLAE----LPGYVHGRVALIGDAAH  310 (414)
T ss_pred             EcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC--ceeeeeccc----ccceeeCcEEEEEcccC
Confidence            222110      001112233456778888899999998888654322  233332222    33788999999999999


Q ss_pred             CCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCch
Q 015303          298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK  377 (409)
Q Consensus       298 ~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~  377 (409)
                      .+.|+.|||+|+||+||..|++.|.....+            .+.++.+|+.|++.|++++..+++.|+.+..+++..++
T Consensus       311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~------------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~  378 (414)
T TIGR03219       311 AMLPHQGAGAGQGLEDAYFLARLLGDTELE------------AGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDP  378 (414)
T ss_pred             CCCCCcCcchHhHHHHHHHHHHHHHhhccC------------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999875432            13678999999999999999999999999999887666


Q ss_pred             hHHHHH
Q 015303          378 ILNFLR  383 (409)
Q Consensus       378 ~~~~~r  383 (409)
                      .....+
T Consensus       379 ~~~~~~  384 (414)
T TIGR03219       379 AVGADE  384 (414)
T ss_pred             hccCcH
Confidence            554433

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=8.7e-45  Score=342.04  Aligned_cols=363  Identities=18%  Similarity=0.207  Sum_probs=258.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-----CCcccceeccccHHHHHHHcCchhHHHhcc-ccccc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-----RVTGFAFTVWTNAWKALDAVGIGNSLRQQH-QQLRS   74 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~   74 (409)
                      || ++||+||||||+|+++|+.|+++|++|+|+||.+.+     ...+.++.+++.+++.|+++|+++.+.... .+...
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~   79 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD   79 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence            55 699999999999999999999999999999999864     234667788999999999999998886554 24444


Q ss_pred             eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEec
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKT  151 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a  151 (409)
                      ..+++....   ..+.+...........+.+.|..+.+.|.+.+   .+++++++++|++++.+++.+.|++++|++++|
T Consensus        80 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a  156 (392)
T PRK09126         80 AKVLNGRSP---FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA  156 (392)
T ss_pred             EEEEcCCCC---ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence            554432221   12233221111122334678888888887765   478999999999999888888999999989999


Q ss_pred             cEEEecCCCchHHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303          152 KVLIGCDGVNSIVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       152 d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      |+||+|||.+|.+|+.++..... ..+...+...+.....  .......+++.+.+++++|.+++.+++.+....+....
T Consensus       157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~  234 (392)
T PRK09126        157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEA  234 (392)
T ss_pred             CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHH
Confidence            99999999999999999765432 2333333333332221  12233456677777889999988776666543322111


Q ss_pred             ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303          231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a  310 (409)
                      ....+.+.+.+++.+.+......+    .  .......++...     ...++|..+|++|+|||||.++|++|||+|+|
T Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~----~--~~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a  303 (392)
T PRK09126        235 LLALDPEAFAAEVTARFKGRLGAM----R--LVSSRHAYPLVA-----VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLG  303 (392)
T ss_pred             HHcCCHHHHHHHHHHHHhhhccCe----E--EcCCCcEeechH-----HHHHHHhhcceEEEehhhhcCCCcccchhhhh
Confidence            123344555555555443211110    0  011122233221     12346788999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      |+||..|++.|..+++...          ....+.+|+.|+++|++++..++..++.+..+++..++..+.+|+.+++.+
T Consensus       304 i~da~~la~~L~~~~~~~~----------~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  373 (392)
T PRK09126        304 LKGQDILARLILAAARRGQ----------DIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAA  373 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCC----------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            9999999999998875310          013478999999999999999999999999999999999999999998754

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=2.2e-44  Score=338.86  Aligned_cols=363  Identities=21%  Similarity=0.242  Sum_probs=256.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV   76 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~   76 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+.+.+...     .+...+++.++++|+++|+++.+.+. ..+.....
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR   84 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence            4689999999999999999999999999999998765322     24467889999999999999998763 44555555


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL  154 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  154 (409)
                      +++...... ..++....+  .....+.++|..|.+.|.+.+  .+++++++++|++++.+++.+++++.+|+++++|+|
T Consensus        85 ~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  161 (392)
T PRK08773         85 VWDAGGGGE-LGFDADTLG--REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA  161 (392)
T ss_pred             EEeCCCCce-EEechhccC--CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence            544322111 122221111  122345789999999988765  368999999999999988889999988889999999


Q ss_pred             EecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE  233 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |+|||.+|.+|+.++...+.. +....+...+....++ ....+..|..+ ..+.++|.+++...++.............
T Consensus       162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~  239 (392)
T PRK08773        162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLA  239 (392)
T ss_pred             EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHc
Confidence            999999999999998775532 2333333333332222 12234444444 46788999888765544443222111123


Q ss_pred             cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303          234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~  313 (409)
                      .+.+.+.+++.+.+..+...+.    ..  .....++...     ...++|..+|++|+|||||.++|+.|||+|+||+|
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D  308 (392)
T PRK08773        240 LDEAAFSRELTQAFAARLGEVR----VA--SPRTAFPLRR-----QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRD  308 (392)
T ss_pred             CCHHHHHHHHHHHHhhhhcCeE----ec--CCccEeechh-----hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHH
Confidence            3445555555555442221110    00  1111223221     13457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhh
Q 015303          314 GIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV  392 (409)
Q Consensus       314 a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~  392 (409)
                      |..|+++|.+.+.. .++           ....+|+.|+++|+++...+...+..+.+++....+...++|++++..+..
T Consensus       309 a~~La~~L~~~~~~~~~~-----------~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~  377 (392)
T PRK08773        309 VAALQQLVRQAHARRADW-----------AAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGK  377 (392)
T ss_pred             HHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            99999999987653 211           235799999999999988888888899999999999999999999875433

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=1.5e-43  Score=332.76  Aligned_cols=363  Identities=18%  Similarity=0.185  Sum_probs=254.1

Q ss_pred             CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccc-ccceeee
Q 015303            1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQ-LRSIVAT   78 (409)
Q Consensus         1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~~~~~   78 (409)
                      |+ .++||+||||||+|+++|+.|+++|++|+|+|+.+.++..+++..+++.+.++|+++|+++.+.+.+.. ...+.++
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence            44 568999999999999999999999999999999998876666777999999999999999998776543 3333333


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccE
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKV  153 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~  153 (409)
                        ..++....+++.....  ......+.|..|.+.|.+.+   ++++++++++|++++..+++  +.|++.+|+++++|+
T Consensus        81 --~~g~~~~~~~~~~~~~--~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~  156 (388)
T PRK07045         81 --HDKELIASLDYRSASA--LGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV  156 (388)
T ss_pred             --cCCcEEEEecCCcccc--CCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence              2344333333322111  11134578999999998865   46899999999999887654  478888999999999


Q ss_pred             EEecCCCchHHHhhh-CCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcc
Q 015303          154 LIGCDGVNSIVAKWL-GFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE  231 (409)
Q Consensus       154 vV~AdG~~S~vr~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  231 (409)
                      ||+|||.+|.+|+.+ +.+... .+....+.+.+....... ......+..++.+.+++|.+++...|++.+..+.....
T Consensus       157 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  235 (388)
T PRK07045        157 LVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGY  235 (388)
T ss_pred             EEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhc
Confidence            999999999999974 544322 122223344444332221 11122233445567789998887777766654332211


Q ss_pred             -cccChHHHHHHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303          232 -LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA  309 (409)
Q Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~  309 (409)
                       .....+.+.+.+.+.+   .+...+.++..... .+...++.     ....++|..+||+|+|||||.++|++|||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~  307 (388)
T PRK07045        236 LADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLG-----RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL  307 (388)
T ss_pred             cCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecC-----ccccccccCCCEEEEEccccccCCCccccHHH
Confidence             1122334444444332   22233333322111 11111221     12334778899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      ||+||..||+.|..++.+.            ....++|+.|+++|++++..++..++.+...++...+.+..+|.++..
T Consensus       308 ai~Da~~La~~L~~~~~~~------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (388)
T PRK07045        308 AIEDAGELGACLDLHLSGQ------------IALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQT  374 (388)
T ss_pred             HHHHHHHHHHHHHhhcCCc------------hhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhc
Confidence            9999999999998876542            256789999999999999999999999999999999999888888754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=2.1e-44  Score=338.90  Aligned_cols=358  Identities=18%  Similarity=0.185  Sum_probs=256.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      |..+||+||||||+|+++|+.|+++|++|+|||+.+.+.. .++..+++.+.++|+++|+++.+.+...++..+.+++..
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   83 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT   83 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence            3458999999999999999999999999999999876543 466778888999999999999998877777777776543


Q ss_pred             CCCccc--ccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           82 SGKPSS--ERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        82 ~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                       +....  ...+...........+.+.+..+.+.|.+.+.   ++. +++++|++++.+++.+.|++.++++++||+||+
T Consensus        84 -g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~  161 (388)
T PRK07494         84 -GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVG  161 (388)
T ss_pred             -CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEE
Confidence             22211  11221111111223457899999999988663   344 889999999998889999999998999999999


Q ss_pred             cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303          157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH  235 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.++...... +++.++...+....++. ......+. +.+.+.++|++++...++.....+........+
T Consensus       162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~  239 (388)
T PRK07494        162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQ-NVSTEFHT-EGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS  239 (388)
T ss_pred             ecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCC-CEEEEEeC-CCCcEEEEECCCCcEEEEEECCHHHHHHHHcCC
Confidence            9999999999998775432 45555555554332221 22233333 444678899987765444332222111112334


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                      .+.+.+.+.+.+.       .++..... .....+++...     ..++|..+||+|+|||||.++|++|||+|+|++||
T Consensus       240 ~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da  307 (388)
T PRK07494        240 DAALSAAIEERMQ-------SMLGKLTLEPGRQAWPLSGQ-----VAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDV  307 (388)
T ss_pred             HHHHHHHHHHHHh-------hhcCCeEEccCCcEeechHH-----HHHhhccCceEEEEhhhhcCCchhhcccchhHHHH
Confidence            4555555544332       22221110 11222333222     23467889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      ..|++.|.....+             .....+|+.|+++|++++..++..+..+.+.+....+....+|+.++..
T Consensus       308 ~~La~~L~~~~~~-------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~  369 (388)
T PRK07494        308 ATLVEIVEDRPED-------------PGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHL  369 (388)
T ss_pred             HHHHHHHHhcCCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9999999874322             1457899999999999999999999999999999999999999999874

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=6.8e-44  Score=334.00  Aligned_cols=354  Identities=18%  Similarity=0.185  Sum_probs=243.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC--C----cccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR--V----TGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV   76 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~--~----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~   76 (409)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+...  .    ..+...++++++++|+++|+++.+... ..+...+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            4899999999999999999999999999999875321  1    124468999999999999999988653 34444444


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKV  153 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  153 (409)
                      .++....    ...+...........+.+.+..|...|.+++   ++++++++++|++++.+++.+++++.+|.+++||+
T Consensus        83 ~~~~~~~----~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l  158 (384)
T PRK08849         83 TWEHPEC----RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW  158 (384)
T ss_pred             EEeCCCc----eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence            4332111    1112111100111235667777888887654   46899999999999998889999999999999999


Q ss_pred             EEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          154 LIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       154 vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.++...... +.+.++...+.....+ ....+..|...+. ..++|+.++...+++...+.......
T Consensus       159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~g~-~~~~pl~~~~~~~~~~~~~~~~~~~~  236 (384)
T PRK08849        159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQ-QDITWQQFTPSGP-RSFLPLCGNQGSLVWYDSPKRIKQLS  236 (384)
T ss_pred             EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCC-CCEEEEEeCCCCC-EEEeEcCCCceEEEEECCHHHHHHHH
Confidence            9999999999999998764433 2333333333332222 2334445554443 45678876643322221111110112


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+++.+.+.+.+.+.   +.+.++    .......++..     ....++|..+|++|+|||||.++|+.|||+|+||+
T Consensus       237 ~~~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~l~-----~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~  304 (384)
T PRK08849        237 AMNPEQLRSEILRHFP---AELGEI----KVLQHGSFPLT-----RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFK  304 (384)
T ss_pred             cCCHHHHHHHHHHHhh---hhhCcE----EeccceEeecc-----ccccchhccCCEEEEEcccccCCCCccchHhHHHH
Confidence            2355666666666543   221111    11111122221     12345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      ||..|+++|...  +             ...+++|+.|++.|++++..++..++.+.++++..++....+|+.++...
T Consensus       305 Da~~L~~~l~~~--~-------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~  367 (384)
T PRK08849        305 DVDVLLAETEKQ--G-------------VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLA  367 (384)
T ss_pred             HHHHHHHHHHhc--C-------------CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            999999998642  1             14578999999999999999999999999999988888999999998753

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-43  Score=333.95  Aligned_cols=360  Identities=18%  Similarity=0.179  Sum_probs=251.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcc-ccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQH-QQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~   81 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+|+++.+....++..+++.+.++|+++|+++.+.+.. .+...+.+++  
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~--   82 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI--   82 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE--
Confidence            5699999999999999999999999999999998765555678899999999999999999887633 3455555543  


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE---EEEecCCc-EEeccEE
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK---LLHLADGT-ILKTKVL  154 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v---~v~~~~g~-~~~ad~v  154 (409)
                      .+......++...... ....+.+.+..+.+.|.+.+   ++++++++++|+++..+++.+   .+...+++ +++||+|
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~v  161 (407)
T PRK06185         83 GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLV  161 (407)
T ss_pred             CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEE
Confidence            2222223333332221 22345688889998887754   478999999999998877764   34445664 7999999


Q ss_pred             EecCCCchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE  233 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |+|||.+|.+|+.++...+... ....+.  +..+..+........++.++..++++|.+ +.+.+..............
T Consensus       162 I~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~  238 (407)
T PRK06185        162 VGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRA  238 (407)
T ss_pred             EECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhh
Confidence            9999999999999987755432 222222  22222221111223345566678899987 5443333332222211122


Q ss_pred             cChHHHHHHHHHHhCCCChHHHHHHHcCC-CCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          234 DHSAELKQFVLGKLHDLPAQVKAVIEKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      .+.    +.+.+.+..+.+.+.+.+.... ......++....     ..++|..+|++|+|||||.++|++|||+|+||+
T Consensus       239 ~~~----~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~  309 (407)
T PRK06185        239 AGL----EAFRERVAELAPELADRVAELKSWDDVKLLDVRVD-----RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQ  309 (407)
T ss_pred             hhH----HHHHHHHHHhCccHHHHHhhcCCccccEEEEEecc-----ccccccCCCeEEEeccccccCcccccchhHHHH
Confidence            233    3344444333333333343221 122223333221     234678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc--hhHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG--KILNFLRDKILAS  389 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~--~~~~~~r~~~~~~  389 (409)
                      ||..|++.|.+.+++.|            .....|+.|+++|++++..++..++.+.+++..+.  +...++|+++|..
T Consensus       310 Da~~La~~l~~~~~~~~------------~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~  376 (407)
T PRK06185        310 DAVAAANILAEPLRRGR------------VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRL  376 (407)
T ss_pred             HHHHHHHHHHHHhccCC------------ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHH
Confidence            99999999999876532            23489999999999999999999999999999888  8899999999874

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-43  Score=337.90  Aligned_cols=350  Identities=18%  Similarity=0.149  Sum_probs=250.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+.+.+.+.....+.... +
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-~   80 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD-T   80 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc-c
Confidence            489999999999999999999999999999999988888899999999999999999999998877666655543221 1


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEec--CC-cEEeccEEEecC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA--DG-TILKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~--~g-~~~~ad~vV~Ad  158 (409)
                          .+++...... ......+.+..+.+.|.+.+  .++++++++++++++++++++++++.  +| .++++|+||+||
T Consensus        81 ----~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgAD  155 (493)
T PRK08244         81 ----RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGAD  155 (493)
T ss_pred             ----cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECC
Confidence                1222211111 12235688999999888765  36899999999999988888877765  45 479999999999


Q ss_pred             CCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCc-CcccccCh
Q 015303          159 GVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ-DKELEDHS  236 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~  236 (409)
                      |.+|.+|+.+++..+.. .....+.+.+......  ......++.++.+++++|++++.+.+++....... ......+.
T Consensus       156 G~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (493)
T PRK08244        156 GAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTL  233 (493)
T ss_pred             CCChHHHHhcCCCccCCCcceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCH
Confidence            99999999998765433 2333344444333222  22233445666688999999887666543322111 11123455


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      +++.+.+.+.+..   .    +..........++.     ....+++|..+||+|+|||||.++|++|||||+||+||.+
T Consensus       234 ~~~~~~l~~~~~~---~----~~~~~~~~~~~~~~-----~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~  301 (493)
T PRK08244        234 EELKTSLIRICGT---D----FGLNDPVWMSRFGN-----ATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN  301 (493)
T ss_pred             HHHHHHHHHhhCC---C----CCcCCeeEEEeccc-----ceeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence            5555555544321   0    00000011111111     1223457888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHH
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKIL  387 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~  387 (409)
                      |+++|...+++.             ..+..|+.|+++|++++..++..+..+..++... +....+|+.+.
T Consensus       302 La~~La~~l~g~-------------~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~  358 (493)
T PRK08244        302 LGWKLAAAIKGW-------------APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLS  358 (493)
T ss_pred             HHHHHHHHHcCC-------------CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHH
Confidence            999999988653             4467899999999999999999998888887654 55667777643

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=2.2e-43  Score=331.54  Aligned_cols=356  Identities=19%  Similarity=0.202  Sum_probs=253.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCc----ccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVT----GFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.++..    ++++.+++.+++.|+++|+++.+.+.+.+.....+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 999999999877543    46789999999999999999998777666665555432


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                      ....   ...+...........+.++|..|.+.|.+.+   ++++++++++|++++.+++.+++++.+|.+++||+||+|
T Consensus        81 ~~~~---~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        81 GHFG---ATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             CCCc---eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence            1111   1111111111122345789999999999876   368999999999999888889999998889999999999


Q ss_pred             CCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCC-eEEEEEEecCCCcCcccccC
Q 015303          158 DGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKELEDH  235 (409)
Q Consensus       158 dG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~  235 (409)
                      ||.+|.+|+.++.+.+.. ++..++...+....+.. ...+. ++..+..+.++|.+++ .+.+++....+........+
T Consensus       158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  235 (382)
T TIGR01984       158 DGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQ-GCAFE-RFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP  235 (382)
T ss_pred             cCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCC-CEEEE-eeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence            999999999998664433 34455555444332221 12222 3444446788999887 54444333221111112234


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~  315 (409)
                      .+++.+.+.+.+.   +.+..+..   ......++...     ...++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus       236 ~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~  304 (382)
T TIGR01984       236 DAEFLAELQQAFG---WRLGKITQ---VGERKTYPLKL-----RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVE  304 (382)
T ss_pred             HHHHHHHHHHHHh---hhccCeEE---cCCccEeecch-----hhhhheecCCEEEEeecccccCCccccchhhhHHHHH
Confidence            4455555555432   22111111   11222233222     1233678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      .|+++|.......             ..+++|+.|+++|++++..++..+..+..++..+++....+|+.+++.+
T Consensus       305 ~La~~L~~~~~~~-------------~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  366 (382)
T TIGR01984       305 TLAEVLIDARIDL-------------GTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALRNLGLLAL  366 (382)
T ss_pred             HHHHHHHHhccCc-------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            9999998765221             3478899999999999999999999999999999988999999988754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=5.4e-43  Score=329.62  Aligned_cols=359  Identities=21%  Similarity=0.267  Sum_probs=258.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHh-ccccccceeeee
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQ-QHQQLRSIVATP   79 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~   79 (409)
                      ||+||||||+|+++|+.|+++|++|+|+||++.++..     ++++.+++++.+.|+++|+++++.+ .+.+.....++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            7999999999999999999999999999999886543     4778999999999999999999887 676777766654


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                      ... ..  .+.+...........+.++|..|.+.|.+.+.   +++++++++|++++.+++.+.+++.+|+++++|+||+
T Consensus        81 ~~~-~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        81 GGS-FG--ALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             CCC-Cc--eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence            322 11  12222111111233467999999999998763   3799999999999988888999999998999999999


Q ss_pred             cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303          157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH  235 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.++.+.... .....+...+......  ......++.++..++++|.+++...+.+.............+
T Consensus       158 adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (385)
T TIGR01988       158 ADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS  235 (385)
T ss_pred             eCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence            9999999999997654432 2334444444333222  111222333445678899999876555544322111112345


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~  315 (409)
                      ++++.+++.+.+..+...+    ..  ......++....     ..+.|..+||+|+|||||.++|++|||+|+||+||.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~-----~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~  304 (385)
T TIGR01988       236 DEEFLAELQRAFGSRLGAI----TL--VGERHAFPLSLT-----HAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVA  304 (385)
T ss_pred             HHHHHHHHHHHHhhhcCce----Ee--ccCcceeechhh-----hhhheecCceEEEecccccCCccccchhhhhHHHHH
Confidence            5666666666543221110    00  112222333221     223678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      .|++.|.+++...+          ......+|+.|++.|++++..++..++.+..++...++....+|++.++.+
T Consensus       305 ~La~~L~~~~~~~~----------~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  369 (385)
T TIGR01988       305 ALAEVLEDARRRGE----------DIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLL  369 (385)
T ss_pred             HHHHHHHHHHhcCC----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            99999998765310          002478999999999999999999999999999999999999999888743

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-42  Score=326.87  Aligned_cols=337  Identities=23%  Similarity=0.299  Sum_probs=243.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+|+++|+.|+++|++|+|+|+.+.++..+.++.++|++++.|+++|+++.+...+.+.....+++. .+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~   79 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQ   79 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCC
Confidence            3899999999999999999999999999999988888889999999999999999999998887777777766643 233


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCC---C-ceEEeCCeEEEEEEeCCeEEEEecCC-----cEEeccEEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---S-GTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~ad~vV  155 (409)
                      .+....... ........+.++|..|.+.|++.+.   + .+++++++|++++++++++.+.+.++     .+++||+||
T Consensus        80 ~~~~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvI  158 (413)
T PRK07538         80 RIWSEPRGL-AAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLI  158 (413)
T ss_pred             EEeeccCCc-ccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEE
Confidence            222211111 0111223456899999999987652   3 46999999999998877766666543     389999999


Q ss_pred             ecCCCchHHHhhhCCC--CCcccceeeEEEeecCCCCCCCCCceeeeec-CCcEEEEEecCCC-------eEEEEEEecC
Q 015303          156 GCDGVNSIVAKWLGFK--NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG-KGLRSGFIPCDDQ-------TIYWFFTWTS  225 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~  225 (409)
                      +|||.+|.+|+.+...  .+.+.+...|.+....+...  ......+.+ .+..+.++|..++       .+.|++....
T Consensus       159 gADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~  236 (413)
T PRK07538        159 GADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV  236 (413)
T ss_pred             ECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence            9999999999998544  34456666777665543221  112223332 3456788898753       5677776654


Q ss_pred             CCc--CcccccChHHHHHHHHHHhCCCChH---HHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCC
Q 015303          226 SSQ--DKELEDHSAELKQFVLGKLHDLPAQ---VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT  300 (409)
Q Consensus       226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~  300 (409)
                      +..  ......+.....+++++.+..|...   +.+++...  ..+..+++....|.    ++|..+|++|||||||.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~p~~~~~~~----~~w~~grv~LvGDAAH~~~  310 (413)
T PRK07538        237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA--EAIYEYPMVDRDPL----PRWTRGRVTLLGDAAHPMY  310 (413)
T ss_pred             CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC--cceeeccccccCCC----CcccCCcEEEEeeccCcCC
Confidence            321  1111122223355666666655442   45555533  23334455443333    3788999999999999999


Q ss_pred             CCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 015303          301 PDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYL  367 (409)
Q Consensus       301 P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~  367 (409)
                      |++|||+|+||+||..|+++|.+.   .             ...++|+.|+++|++++..++..++.
T Consensus       311 P~~GqG~~~Ai~Da~~La~~L~~~---~-------------~~~~aL~~Ye~~R~~~~~~~~~~s~~  361 (413)
T PRK07538        311 PVGSNGASQAILDARALADALAAH---G-------------DPEAALAAYEAERRPATAQIVLANRL  361 (413)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHhc---C-------------CHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence            999999999999999999999872   1             46899999999999999999998877

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=4.2e-42  Score=331.15  Aligned_cols=372  Identities=25%  Similarity=0.345  Sum_probs=264.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcc---cceeccccHHHHHHHcCc--hhHHHhcccccc-ce
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTG---FAFTVWTNAWKALDAVGI--GNSLRQQHQQLR-SI   75 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~---~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~~-~~   75 (409)
                      ++++|+||||||+|+++|+.|+++|++|+||||++.. +..+   .++.+++++++.|+++|+  .+++.+.+.... .+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            4589999999999999999999999999999998632 2222   468899999999999985  455555543221 11


Q ss_pred             -eeeecCCCCcccccccccc-cccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303           76 -VATPTISGKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKV  153 (409)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  153 (409)
                       .+.+...+.....++.... ........+.+.|..|.+.|.+.++...++++++|++++..++.+++++.+|.++++|+
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDl  239 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDL  239 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCE
Confidence             1122222222112211110 11111224579999999999988755567889999999999999999999998899999


Q ss_pred             EEecCCCchHHHhhh-CCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          154 LIGCDGVNSIVAKWL-GFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       154 vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.+ +...+.+.+..+|++.+..............+.+.+.++...|.+++..+|+..+..+..   .
T Consensus       240 VVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~  316 (668)
T PLN02927        240 LVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---G  316 (668)
T ss_pred             EEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---c
Confidence            999999999999987 555566778888888776533221122344556777777777887777766654433221   1


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ....+..++++++.+..|.+.+.++++..+...+..++++...+..    +|..+||+|+|||||.++|+.|||.|+||+
T Consensus       317 ~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~Aie  392 (668)
T PLN02927        317 ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIE  392 (668)
T ss_pred             cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHH
Confidence            1234556788889999999999998887655555556666554432    688899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc-------hhHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG-------KILNFLRDK  385 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~-------~~~~~~r~~  385 (409)
                      ||..|+..|.++.++..      .......+..+|+.|+++|++++..++..++....++....       ..+.+++.+
T Consensus       393 Da~~La~~L~~~~~~~~------~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~  466 (668)
T PLN02927        393 DSFQLALELDEAWKQSV------ETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKF  466 (668)
T ss_pred             HHHHHHHHHHHhhcccc------ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence            99999999988754310      00112357899999999999999999988665544443222       234555655


Q ss_pred             HH
Q 015303          386 IL  387 (409)
Q Consensus       386 ~~  387 (409)
                      .+
T Consensus       467 ~~  468 (668)
T PLN02927        467 RV  468 (668)
T ss_pred             CC
Confidence            54

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=4.3e-42  Score=329.98  Aligned_cols=376  Identities=18%  Similarity=0.148  Sum_probs=259.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||.... .....|..++|++.+.|+++|+++.+.+...+..++.+++. 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~-  110 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH-  110 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence            3579999999999999999999999999999998622 22346778999999999999999999887777777777653 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC-----CCceEEeCCeEEEEEEeCC-------eEEEEecC----
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL-----PSGTIRYSSQVVSIEESGH-------FKLLHLAD----  145 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~i~~~~~-------~v~v~~~~----  145 (409)
                      .+... .+++..     ......+++..|.+.|.+.+     ++++++. .+++++..+++       +++++..+    
T Consensus       111 ~G~~~-~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~  183 (567)
T PTZ00367        111 KGKQV-KLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDV  183 (567)
T ss_pred             CCCEE-EecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccc
Confidence            23321 222221     12234567888888887754     5678865 47887754432       35555544    


Q ss_pred             -------------------CcEEeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcE
Q 015303          146 -------------------GTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLR  206 (409)
Q Consensus       146 -------------------g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (409)
                                         +++++||+||+|||.+|.+|+.++...+.+.....+.+........+.......+++++..
T Consensus       184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp  263 (567)
T PTZ00367        184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP  263 (567)
T ss_pred             cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence                               5579999999999999999999976555444444544433221122223334566788889


Q ss_pred             EEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhC-CCChHHHHHHHc-CC-CCceEeecccccCcccccccc
Q 015303          207 SGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH-DLPAQVKAVIEK-TP-LDSIISSRLQYRQPQEVLWGN  283 (409)
Q Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  283 (409)
                      ++++|++++..++.+.+..+..+     +.++..+.+.+.+. .+++.+.+.+.. .. ...+..++....++.     .
T Consensus       264 i~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~-----~  333 (567)
T PTZ00367        264 ILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPA-----F  333 (567)
T ss_pred             EEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCc-----c
Confidence            99999999987766655433221     11233444444433 345555554422 11 123444444443322     4


Q ss_pred             cCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh--ccCCCCCCchhhhhhhHHHHHH----HHHHhhhhh
Q 015303          284 ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK--TKQGVGEEDEEEFNKRVEMGLK----RYAKERRWR  357 (409)
Q Consensus       284 ~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~----~Y~~~r~~~  357 (409)
                      +..+|++|||||||+++|++|||||+||+||..|++.|....+  +.|+       .+...+.++|+    .|++.|+++
T Consensus       334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~-------~d~~~v~~aL~~~~~~Y~~~Rk~~  406 (567)
T PTZ00367        334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQ-------NEMAEIEDAIQAAILSYARNRKTH  406 (567)
T ss_pred             CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCc-------hhHHHHHHHHHHhHHHHHHHhhhh
Confidence            5678999999999999999999999999999999999976432  1111       11224466666    999999999


Q ss_pred             HHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhh--hhcccccCCCCcccC
Q 015303          358 CFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG--LLLKKADFDCGNLTS  408 (409)
Q Consensus       358 ~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~g~~~~  408 (409)
                      +..+...+..++++++.     ..+|+..+++|-..  .......++.|-.|+
T Consensus       407 a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~  454 (567)
T PTZ00367        407 ASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPS  454 (567)
T ss_pred             HHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCC
Confidence            99999999999999988     57999999987555  445556666666553

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=8.5e-42  Score=326.87  Aligned_cols=381  Identities=17%  Similarity=0.154  Sum_probs=260.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhc-cccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~~   82 (409)
                      .+||+||||||+|+++|+.|++.|++|+|+||.......+.+..++|.+.+.|+++|+++.+... ..+..++.++.  .
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~--~  120 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK--D  120 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--C
Confidence            58999999999999999999999999999999876556667899999999999999999988764 33555555543  2


Q ss_pred             CCccccccccccc--ccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEecc
Q 015303           83 GKPSSERSLKVQG--KYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTK  152 (409)
Q Consensus        83 ~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad  152 (409)
                      ++. ...+++...  .......+.++|.+|.+.|++++   +++++..+ +++++..+++.   +++...+|+  +++||
T Consensus       121 g~~-~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~Ad  198 (514)
T PLN02985        121 GKE-AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAP  198 (514)
T ss_pred             CEE-EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECC
Confidence            322 122332111  11122345789999999998865   46788766 56666555543   344445665  46799


Q ss_pred             EEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +||+|||.+|.+|+.++...+..  .....++.........+.....+++.+..+.++|+++++..+.+....+..+   
T Consensus       199 LVVgADG~~S~vR~~l~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~---  273 (514)
T PLN02985        199 LTVVCDGCYSNLRRSLNDNNAEV--LSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP---  273 (514)
T ss_pred             EEEECCCCchHHHHHhccCCCcc--eeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC---
Confidence            99999999999999997654321  1122222221111122333455667777889999998887666555443222   


Q ss_pred             ccChHHHHHHHHHHhC-CCChHHHHHHHc-CCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303          233 EDHSAELKQFVLGKLH-DLPAQVKAVIEK-TPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA  309 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~  309 (409)
                      ..+..++.+.+.+... ..++.+.+.+.. ... ..+...+....     ....+..+|++|||||||+++|++|||||+
T Consensus       274 ~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l-----~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~  348 (514)
T PLN02985        274 SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRM-----SATLSDKKGVIVLGDAFNMRHPAIASGMMV  348 (514)
T ss_pred             CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccc-----cccccCCCCEEEEecccccCCCCccccHhH
Confidence            2223444555544332 455566665432 111 12333333222     122455789999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec-cCchhHHHHHHHHHH
Q 015303          310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ-SDGKILNFLRDKILA  388 (409)
Q Consensus       310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~-~~~~~~~~~r~~~~~  388 (409)
                      |++||..|++.|.+.-.-          .+.+...++|+.|+++|++++..+...|..++.+|. ..++....+|+..|.
T Consensus       349 AleDA~vLa~lL~~~~~~----------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~  418 (514)
T PLN02985        349 LLSDILILRRLLQPLSNL----------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYD  418 (514)
T ss_pred             HHHHHHHHHHHhhhcccc----------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999874210          013366899999999999999999999999999996 567778999999999


Q ss_pred             HHhhh--hhcccccCCCCcccC
Q 015303          389 SFLVG--LLLKKADFDCGNLTS  408 (409)
Q Consensus       389 ~~~~~--~~~~~~~~~~g~~~~  408 (409)
                      +|...  .......++.|-.|+
T Consensus       419 y~~~g~~~~~~~~~ll~~~~~~  440 (514)
T PLN02985        419 YLCSGGFRTSGMMALLGGMNPR  440 (514)
T ss_pred             HHHcCCccccccHHHHcCCCCC
Confidence            86555  444556666665553

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=2.1e-42  Score=325.61  Aligned_cols=359  Identities=21%  Similarity=0.199  Sum_probs=248.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC------cccceeccccHHHHHHHcCchhHHHhc-cccccce
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV------TGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSI   75 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~   75 (409)
                      +.+||+||||||+|+++|+.|++.|++|+|+|+.+.+..      ..+...+++.+.++|+.+|+++.+... ..+....
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            458999999999999999999999999999999864321      225578899999999999999888653 3334444


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTK  152 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  152 (409)
                      ..+.+..+..    .+...........+.+.|..|.+.|.+.+   ++++++++++|+++..+++.+.|++.++++++||
T Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~  159 (391)
T PRK08020         84 ETWEWETAHV----VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK  159 (391)
T ss_pred             EEEeCCCCeE----EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence            4433322211    11111111122345789999999998765   4789999999999998888899999898889999


Q ss_pred             EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcc
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE  231 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  231 (409)
                      +||+|||.+|.+|+.++...... +.+.++...+..+..+ ....+..+...+ ...++|..++...++....+......
T Consensus       160 ~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~~~~v~~~~~~~~~~~  237 (391)
T PRK08020        160 LVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPP-GDSTWQQFTPSG-PRAFLPLFDNWASLVWYDSPARIRQL  237 (391)
T ss_pred             EEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCC-CCEEEEEEcCCC-CEEEeECCCCcEEEEEECCHHHHHHH
Confidence            99999999999999997664332 3344444444443322 123344455544 35678988765433222111111111


Q ss_pred             cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303          232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al  311 (409)
                      ...+.+++.+.+.+.+   +..+..+..    .....++...     ...++|..+|++|+|||||.++|+.|||+|+||
T Consensus       238 ~~~~~~~~~~~l~~~~---~~~~~~~~~----~~~~~~pl~~-----~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al  305 (391)
T PRK08020        238 QAMSMAQLQQEIAAHF---PARLGAVTP----VAAGAFPLTR-----RHALQYVQPGLALVGDAAHTINPLAGQGVNLGY  305 (391)
T ss_pred             HCCCHHHHHHHHHHHh---hhhccceEe----ccccEeecce-----eehhhhccCcEEEEechhhccCCcccchhHHHH
Confidence            2223344444444432   222111100    0112223221     234478899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          312 EDGIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       312 ~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      +||..|+++|.+.... .++           ....+|+.|++.|+++...++..++.+.+++..+.+..+.+|+.++..+
T Consensus       306 ~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~  374 (391)
T PRK08020        306 RDVDALLDVLVNARSYGEAW-----------ASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAA  374 (391)
T ss_pred             HHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            9999999999887542 111           3468999999999999999999999999999999999999999999843

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-42  Score=321.57  Aligned_cols=338  Identities=20%  Similarity=0.244  Sum_probs=243.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.++|+||||||+|+++|+.|++.|++|+|+||.+.+ ...+.++.+++++++.|+++|+.+.. ..+.+.....+++ .
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~-~   82 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD-R   82 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-C
Confidence            4579999999999999999999999999999998754 34567888999999999999997654 4444444444443 2


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .++.+.....         ....+.+..+.+.|.+.+++++++++++|++++.+++.+++++.+|++++||+||+|||.+
T Consensus        83 ~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~  153 (386)
T PRK07236         83 DGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR  153 (386)
T ss_pred             CCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            3332221111         1123567889999998888889999999999999888999999999999999999999999


Q ss_pred             hHHHhhh-CCCCCcccceeeEEEeecCCC---CC--CCCCceeeeecCCcEEEEEecCCC---------eEEEEEEecCC
Q 015303          162 SIVAKWL-GFKNPAFVGRSAIRGYSDFKG---SH--GFEPNFLQFFGKGLRSGFIPCDDQ---------TIYWFFTWTSS  226 (409)
Q Consensus       162 S~vr~~l-~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~~~~~~~  226 (409)
                      |.+|+.+ +...+.+.+..++.+.+....   ..  .....+..+.+++..+.++|+++.         .++|+.....+
T Consensus       154 S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (386)
T PRK07236        154 STVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAP  233 (386)
T ss_pred             chHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCC
Confidence            9999997 333445666677766554211   11  112334455566767777887532         23344333222


Q ss_pred             CcC---cc--------------cccChHHHHHHHHHHhCC-CChHHHHHHHcCCCCceEeecccccCcccccccccCCCc
Q 015303          227 SQD---KE--------------LEDHSAELKQFVLGKLHD-LPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS  288 (409)
Q Consensus       227 ~~~---~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (409)
                      ...   ..              .....+...+.+.+.+.. +++.+..+++.....  ..+++...     ..++|..+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~gr  306 (386)
T PRK07236        234 AGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL-----EVPRMAFGR  306 (386)
T ss_pred             CccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-----cCcccccCc
Confidence            100   00              001123455666666654 888888888765322  11222221     123678899


Q ss_pred             EEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 015303          289 VCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLV  368 (409)
Q Consensus       289 v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~  368 (409)
                      ++|+|||||.++|+.|||+|+||+||..|+++|....               +....+|+.|++.|++++..++..++.+
T Consensus       307 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---------------~~~~~al~~Ye~~R~~r~~~~~~~s~~~  371 (386)
T PRK07236        307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---------------GDIDAALAAWEAERLAVGAAIVARGRRL  371 (386)
T ss_pred             EEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999997631               1367999999999999999999999988


Q ss_pred             heeec
Q 015303          369 GSIQQ  373 (409)
Q Consensus       369 ~~~~~  373 (409)
                      ...++
T Consensus       372 ~~~~~  376 (386)
T PRK07236        372 GARLQ  376 (386)
T ss_pred             HHHHH
Confidence            88776

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=7.7e-42  Score=326.63  Aligned_cols=345  Identities=19%  Similarity=0.166  Sum_probs=246.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..+++.+++.|+++|+++.+.+.+.......+.   
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~---   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA---   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee---
Confidence            35899999999999999999999999999999998765 34578889999999999999999998765433221110   


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                       .   ..+++...... ......+.+..+.+.|.+.+.  +++++++++|++++++++++.+++.++.+++||+||+|||
T Consensus        79 -~---~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG  153 (488)
T PRK06834         79 -A---TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDG  153 (488)
T ss_pred             -e---EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence             0   11111111111 122346778888888877653  6899999999999999999999988888899999999999


Q ss_pred             CchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecC-CCeEEEEEEecCCCcCcccccChH
Q 015303          160 VNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD-DQTIYWFFTWTSSSQDKELEDHSA  237 (409)
Q Consensus       160 ~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      .+|.+|+.+++..+... ....+...+.....+    .+.....+...+.+.|.. ++.+.+++.....  ......+.+
T Consensus       154 ~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  227 (488)
T PRK06834        154 GRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATGEPTLD  227 (488)
T ss_pred             CCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCCCCCHH
Confidence            99999999988776543 333344444433221    122233444456677776 5544333332221  111244556


Q ss_pred             HHHHHHHHHhC-CCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          238 ELKQFVLGKLH-DLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      ++.+.+.+.+. .+..        ........++.     ....+++|..+||+|+|||||.++|+.|||||+||+||.+
T Consensus       228 ~~~~~l~~~~g~~~~~--------~~~~~~~~~~~-----~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~n  294 (488)
T PRK06834        228 DLREALIAVYGTDYGI--------HSPTWISRFTD-----MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVN  294 (488)
T ss_pred             HHHHHHHHhhCCCCcc--------ccceeEEeccc-----cceecccccCCcEEEEeeccccCCccccccccccHHHHHH
Confidence            66666666553 2211        00011111111     2234568889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      |+++|...+++.             ..+.+|+.|+++|++.+..++..+..+..++. .++....+|+.++.
T Consensus       295 LawkLa~vl~g~-------------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~  352 (488)
T PRK06834        295 LGWKLAQVVKGT-------------SPESLLDTYHAERHPVAARVLRNTMAQVALLR-PDDRTEALRDIVAE  352 (488)
T ss_pred             HHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHH
Confidence            999999988864             45799999999999999999999988887776 67778999998875

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=4.4e-42  Score=336.81  Aligned_cols=351  Identities=18%  Similarity=0.171  Sum_probs=241.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      |.+++||+||||||+||++|+.|++. |++|+|||+.+.+...+++..++++++++|+++|+++++.+.+.......++.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~  108 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK  108 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence            44578999999999999999999995 99999999998888888999999999999999999999988887777666654


Q ss_pred             cCCC--Cccccc-cccccc-ccCCccceeccHHHHHHHHHhhCC----CceEEeCCeEEEEEEeC---CeEEEEec----
Q 015303           80 TISG--KPSSER-SLKVQG-KYGEHEMRCVRRKLLLETLAKELP----SGTIRYSSQVVSIEESG---HFKLLHLA----  144 (409)
Q Consensus        80 ~~~~--~~~~~~-~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~----~~~i~~~~~v~~i~~~~---~~v~v~~~----  144 (409)
                      ....  ..+... .+.... ....+....+++..+.+.|++.+.    ++++.+++++++++.++   ..|++++.    
T Consensus       109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~  188 (634)
T PRK08294        109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG  188 (634)
T ss_pred             CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence            3211  111000 000000 011223457889999999988663    25789999999998764   24777775    


Q ss_pred             --CC--cEEeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecC--CCCCC-CCCceeeeecCCcEEEEEecCCCe-
Q 015303          145 --DG--TILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDF--KGSHG-FEPNFLQFFGKGLRSGFIPCDDQT-  216 (409)
Q Consensus       145 --~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~-  216 (409)
                        +|  ++++||+||+|||++|.||+.+++..........| +..+.  ....+ ......+....++.+.++|..++. 
T Consensus       189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~  267 (634)
T PRK08294        189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL  267 (634)
T ss_pred             CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence              34  47999999999999999999998876544322222 22111  11111 111122233455678899998875 


Q ss_pred             EEEEEEecC---CCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCccccccccc---------
Q 015303          217 IYWFFTWTS---SSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNI---------  284 (409)
Q Consensus       217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  284 (409)
                      +.+++....   .........+.+++.+.+.+.+..+...+         ..+.++..+..  .+..++++         
T Consensus       268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~---------~~v~w~s~y~i--~~r~a~~f~~~~~~~~~  336 (634)
T PRK08294        268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV---------KEVAWWSVYEV--GQRLTDRFDDVPAEEAG  336 (634)
T ss_pred             EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce---------eEEeEEecccc--cceehhhcccccccccc
Confidence            333332211   11111134566666666665443222221         12222222111  11122222         


Q ss_pred             -CCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 015303          285 -SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELIS  363 (409)
Q Consensus       285 -~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~  363 (409)
                       ..+||+|+|||||.++|.+|||||+||+||.+|++.|...+++.             ..+..|+.|+++|+++++.+++
T Consensus       337 ~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-------------a~~~lL~tYe~ERrp~a~~li~  403 (634)
T PRK08294        337 TRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-------------SPPELLHTYSAERQAIAQELID  403 (634)
T ss_pred             cccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHH
Confidence             35899999999999999999999999999999999999988764             4578999999999999999999


Q ss_pred             HHHHhheeeccCc
Q 015303          364 IAYLVGSIQQSDG  376 (409)
Q Consensus       364 ~s~~~~~~~~~~~  376 (409)
                      .+..+..++....
T Consensus       404 ~~~~~~~l~~~~~  416 (634)
T PRK08294        404 FDREWSTMMAAPP  416 (634)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999887543

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-42  Score=333.52  Aligned_cols=340  Identities=18%  Similarity=0.192  Sum_probs=238.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+++.+.+.+......+.. .
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~-~   80 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD-D   80 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC-C
Confidence            458999999999999999999999999999999998888889999999999999999999999887776666555432 1


Q ss_pred             CCcccccccccc----cccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEe---cCCcEEeccE
Q 015303           83 GKPSSERSLKVQ----GKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHL---ADGTILKTKV  153 (409)
Q Consensus        83 ~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~---~~g~~~~ad~  153 (409)
                      +. +....+...    ..........+.+..+++.|.+.+.  +++++++++|++++++++++++++   .++++++||+
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~  159 (502)
T PRK06184         81 GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY  159 (502)
T ss_pred             ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence            21 111111110    0011122356888889988887663  689999999999999888888877   5566899999


Q ss_pred             EEecCCCchHHHhhhCCCCCcccc-e-eeEEEeecCCCCCCCCCceeeeecCC-cEEEEEecCCCeEEEEEEecCCCcCc
Q 015303          154 LIGCDGVNSIVAKWLGFKNPAFVG-R-SAIRGYSDFKGSHGFEPNFLQFFGKG-LRSGFIPCDDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       154 vV~AdG~~S~vr~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      ||+|||.+|.+|+.+++....... . ..+.........  ....+..+..+. ..+.++|+.++.. |.+.+..+.. .
T Consensus       160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~  235 (502)
T PRK06184        160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPG-G  235 (502)
T ss_pred             EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCC-c
Confidence            999999999999999877654422 1 222322322221  122344444443 6778889876643 3332222221 1


Q ss_pred             ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303          231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a  310 (409)
                      ....+.+.+.+.+.+.+......         ...+.+.. .+. .....+++|..+||+|+|||||.++|+.|||||+|
T Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~-~~~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g  304 (502)
T PRK06184        236 EPDLSADGLTALLAERTGRTDIR---------LHSVTWAS-AFR-MNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS  304 (502)
T ss_pred             cCCCCHHHHHHHHHHhcCCCCcc---------eeeeeeee-ccc-cceeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence            12344555555555443311110         11111111 111 11223457889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      |+||.+|++.|...+++              ..+.+|+.|+++|++++..+++.+..+...+.
T Consensus       305 i~DA~~LawkLa~vl~g--------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~  353 (502)
T PRK06184        305 VQDAYNLGWKLAAVLAG--------------APEALLDTYEEERRPVAAAVLGLSTELLDAIK  353 (502)
T ss_pred             HHHHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988775              23678999999999999999999988776654

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=3e-42  Score=324.18  Aligned_cols=351  Identities=16%  Similarity=0.136  Sum_probs=248.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC----CceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHhcccccccee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG----IRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV   76 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g----~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      +.+||+||||||+|+++|+.|+++|    ++|+|+|+.+.+.  ...+++.+++.++++|+++|+++.   ...+...+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~~~~   86 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIH   86 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCcccEEE
Confidence            3589999999999999999999987    4799999986543  345799999999999999999876   334444554


Q ss_pred             eeecC-CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCC---cEEe
Q 015303           77 ATPTI-SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADG---TILK  150 (409)
Q Consensus        77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~  150 (409)
                      +.+.. .+..  .+.....  ......+.++|..|.+.|.+.+.  ++++++++++++++++++++++++.++   ++++
T Consensus        87 ~~~~~~~g~~--~~~~~~~--~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~  162 (398)
T PRK06996         87 VSQRGHFGRT--LIDRDDH--DVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLR  162 (398)
T ss_pred             EecCCCCceE--Eeccccc--CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEe
Confidence            44321 1111  1222111  11234568999999999998764  578999999999999889999998865   5899


Q ss_pred             ccEEEecCCC-chHHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe---EEEEEEecC
Q 015303          151 TKVLIGCDGV-NSIVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT---IYWFFTWTS  225 (409)
Q Consensus       151 ad~vV~AdG~-~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~  225 (409)
                      ||+||+|||. +|.+|+.++..... .++..++.+.+....++. ...+..+...| ++.++|.+++.   +.++....+
T Consensus       163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G-~~~~lp~~~~~~~~~~~v~~~~~  240 (398)
T PRK06996        163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEG-PLALLPLGGPRQADYALVWCCAP  240 (398)
T ss_pred             eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCCCcEEEEEECCH
Confidence            9999999996 57888888765443 356677777666543332 22333444444 57888998654   333322222


Q ss_pred             CCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCccc
Q 015303          226 SSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQ  305 (409)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~  305 (409)
                      +........+.+.+.+.+.+.+......+   ...   .....++....     ..++|..+||+|+|||||.++|+.||
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~---~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQ  309 (398)
T PRK06996        241 DEAARRAALPDDAFLAELGAAFGTRMGRF---TRI---AGRHAFPLGLN-----AARTLVNGRIAAVGNAAQTLHPVAGQ  309 (398)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccccCce---EEe---cceEEEeeecc-----cccceecCCEEEEEhhhccCCcccch
Confidence            21111123455566666666554321111   110   11112222211     23378899999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHH
Q 015303          306 GGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDK  385 (409)
Q Consensus       306 G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~  385 (409)
                      |+|+||+||..||++|...  +              ....+|+.|+++|++++..++..+..+.++++..++....+|+.
T Consensus       310 G~n~ai~Da~~La~~L~~~--~--------------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~  373 (398)
T PRK06996        310 GLNLGLRDAHTLADALSDH--G--------------ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGA  373 (398)
T ss_pred             hHHHHHHHHHHHHHHHHhc--C--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhH
Confidence            9999999999999999651  1              23577999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 015303          386 ILAS  389 (409)
Q Consensus       386 ~~~~  389 (409)
                      ++..
T Consensus       374 ~l~~  377 (398)
T PRK06996        374 ALTA  377 (398)
T ss_pred             HHHH
Confidence            9874

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=7.4e-42  Score=321.83  Aligned_cols=359  Identities=19%  Similarity=0.206  Sum_probs=251.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV   76 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~   76 (409)
                      +++||+||||||+|+++|+.|++.|++|+|+||++.+...     .+...+++.++++|+.+|+++.+... ..+.....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            4689999999999999999999999999999999876543     34478999999999999999887543 23444555


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--C-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKV  153 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  153 (409)
                      ++....    ..+.+.......+...+.+++..|.+.|.+++.  + ++++ +++|+++..+++.+.|++.+|.+++||+
T Consensus        84 ~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~  158 (388)
T PRK07608         84 VFGDAH----ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL  158 (388)
T ss_pred             EEECCC----ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence            443221    122222221122333457889999999988663  3 6777 9999999888888999999988899999


Q ss_pred             EEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          154 LIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       154 vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.++...... .....+...+..+..+  ......++.++.+++++|++++...+.+...........
T Consensus       159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  236 (388)
T PRK07608        159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPH--RGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELL  236 (388)
T ss_pred             EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHH
Confidence            9999999999999998765432 2233333333333222  223345556767888999999876544333211111112


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+++.+.+.+.+.+..   .+.. +...  .....++...     ...+.|..+||++||||||.++|++|||+|+||+
T Consensus       237 ~~~~~~~~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~  305 (388)
T PRK07608        237 ALSPEALAARVERASGG---RLGR-LECV--TPAAGFPLRL-----QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLR  305 (388)
T ss_pred             CCCHHHHHHHHHHHHHH---hcCC-ceec--CCcceeecch-----hhhhhhhcCceEEEeccccccCCccccccchhHH
Confidence            23445555555443321   1100 1110  1111222221     1234678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF  390 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  390 (409)
                      ||..||++|.......+.           ....+|+.|+++|++++..++..++.+..+++.+++....+|+..++.+
T Consensus       306 da~~La~~L~~~~~~~~~-----------~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  372 (388)
T PRK07608        306 DVAALADVLAGREPFRDL-----------GDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARWLRNAGMALV  372 (388)
T ss_pred             HHHHHHHHHHHhhccCCC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            999999999876422111           2247999999999999999999999999999999999999999998854

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=2.9e-41  Score=329.66  Aligned_cols=356  Identities=19%  Similarity=0.210  Sum_probs=245.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+.+..+.....+... 
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-  100 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD-  100 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC-
Confidence            4579999999999999999999999999999999888778889999999999999999999998777655443333321 


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec--CCc-EEeccEEEe
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DGT-ILKTKVLIG  156 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~-~~~ad~vV~  156 (409)
                       .....+...............+.+..+++.|.+.+   ++++++++++|++++++++.+++++.  ++. +++||+||+
T Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg  179 (547)
T PRK08132        101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA  179 (547)
T ss_pred             -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence             22222222111111112234578889999988765   46899999999999998888777654  444 689999999


Q ss_pred             cCCCchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeee---ecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          157 CDGVNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQF---FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      |||.+|.+|+.++....... ....+...+....... ...+..+   +.++..+++.|.+++.+.+.+....... ...
T Consensus       180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  257 (547)
T PRK08132        180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDAD-PEA  257 (547)
T ss_pred             CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCC-chh
Confidence            99999999999987655432 1222222222222211 1112222   1345566666776664433332222111 111


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+.+.+.+.+.+.+.           ......+.+...+.  .....+++|..+||+|+|||||.++|+.|||||+||+
T Consensus       258 ~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~--~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~  324 (547)
T PRK08132        258 EKKPENVIPRVRALLG-----------EDVPFELEWVSVYT--FQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQ  324 (547)
T ss_pred             hcCHHHHHHHHHHHcC-----------CCCCeeEEEEEeee--eeeeeecccccccEEEEecccccCCCcccccccchHH
Confidence            2233444444443332           11011111111111  1122345788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      ||.+|++.|...+++.             ..+.+|+.|+++|++++..++..+..+..+++..++....+|+.++.
T Consensus       325 DA~~LawkLa~vl~g~-------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  387 (547)
T PRK08132        325 DADNLAWKLALVLRGR-------------APDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLR  387 (547)
T ss_pred             HHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Confidence            9999999999988764             45789999999999999999999999888888888888888887765

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-41  Score=322.93  Aligned_cols=339  Identities=17%  Similarity=0.181  Sum_probs=237.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.++++|+.+|+++++...+.+......+.  .
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~--~   81 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA--N   81 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec--C
Confidence            35899999999999999999999999999999999888888999999999999999999999887665555443332  1


Q ss_pred             CCcccccc--cccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           83 GKPSSERS--LKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      +..+....  +.............+.+..+++.|.+.+  .+++++++++|++++++++++.+++.+|++++|++||+||
T Consensus        82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD  161 (487)
T PRK07190         82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD  161 (487)
T ss_pred             CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence            21111100  1111101112234678888888887654  3689999999999999888888888888899999999999


Q ss_pred             CCchHHHhhhCCCCCcccceeeEE-EeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303          159 GVNSIVAKWLGFKNPAFVGRSAIR-GYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA  237 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      |.+|.+|+.++++.+.......+. .........+.......+....+.+.++|.+++...+++..  +.    ...+.+
T Consensus       162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~----~~~t~~  235 (487)
T PRK07190        162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DT----KDFTLE  235 (487)
T ss_pred             CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CC----CCCCHH
Confidence            999999999998876543322221 11112111111112222334444677788887654433322  11    233445


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccC-CCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303          238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNIS-RGSVCVAGDALHPMTPDIGQGGCAALEDGIV  316 (409)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~  316 (409)
                      ++.+.+.+.+.....         .+..+.++. .+ ......+++|. .+||+|+|||||.++|++|||||+||+||.+
T Consensus       236 ~~~~~l~~~~~~~~~---------~~~~~~w~s-~~-~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~n  304 (487)
T PRK07190        236 QAIAKINHAMQPHRL---------GFKEIVWFS-QF-SVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFN  304 (487)
T ss_pred             HHHHHHHHhcCCCCC---------ceEEEEEEE-Ee-eeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHH
Confidence            555555543332111         111221211 11 11233455775 7999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      |+++|...+++.             ..+..|+.|+++|++.+..++..+..+..+..
T Consensus       305 L~wkLa~v~~g~-------------a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~  348 (487)
T PRK07190        305 LIWKLNMVIHHG-------------ASPELLQSYEAERKPVAQGVIETSGELVRSTK  348 (487)
T ss_pred             HHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999988864             45799999999999999999999998877664

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.1e-41  Score=321.41  Aligned_cols=364  Identities=18%  Similarity=0.169  Sum_probs=251.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHc---CCceEEEeCCC-C----cCCcccceeccccHHHHHHHcCchhHHHhcccccc
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSE-S----LRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLR   73 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~-~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~   73 (409)
                      |+++||+||||||+|+++|+.|+++   |++|+|+||.. .    +...++++.+++.+++.|+++|+++.+.+.+.+..
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~   80 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT   80 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence            3568999999999999999999998   99999999953 2    12345789999999999999999999988776666


Q ss_pred             ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEe
Q 015303           74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILK  150 (409)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  150 (409)
                      .+.+.+..  .. ....+...........+.+.|..|.+.|.+.+   ++++++++++|+++..+++.+.+++.++.+++
T Consensus        81 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~  157 (395)
T PRK05732         81 HIHVSDRG--HA-GFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLT  157 (395)
T ss_pred             EEEEecCC--CC-ceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence            55443221  11 11111111111112235688888888887754   46899999999999988888999998888899


Q ss_pred             ccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD  229 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  229 (409)
                      +|+||+|||.+|.+|+.++...... .+..++...+...... ....+..+.. +..++++|.++++..++.....+...
T Consensus       158 a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~~~p~~~g~~~~~~~~~~~~~~  235 (395)
T PRK05732        158 GRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH-QGRAFERFTE-HGPLALLPMSDGRCSLVWCHPLEDAE  235 (395)
T ss_pred             eCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC-CCEEEEeecC-CCCEEEeECCCCCeEEEEECCHHHHH
Confidence            9999999999999999987764433 3444544444332211 1222333333 34578899999876554443222111


Q ss_pred             cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303          230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA  309 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~  309 (409)
                      .....+.+.+.+.+.+.+.   .....+..   ......+++...     ..++|..+|++|+|||||.++|++|||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~l~~~-----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~  304 (395)
T PRK05732        236 EVLSWSDAQFLAELQQAFG---WRLGRITH---AGKRSAYPLALV-----TAAQQISHRLALVGNAAQTLHPIAGQGFNL  304 (395)
T ss_pred             HHHcCCHHHHHHHHHHHHH---hhhcceee---cCCcceeccccc-----chhhhccCcEEEEeecccccCCccccccch
Confidence            1122344445555555431   11111111   111112222221     223677899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      ||+||..|+++|...+.+..          .....++|+.|+++|++++..++..+..+..++..+..+...+|+.+++.
T Consensus       305 al~Da~~La~~L~~~~~~~~----------~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  374 (395)
T PRK05732        305 GLRDVMSLAETLTQALARGE----------DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGLMA  374 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            99999999999988765420          00235889999999999999999999999999998888899999999875


Q ss_pred             Hh
Q 015303          390 FL  391 (409)
Q Consensus       390 ~~  391 (409)
                      +.
T Consensus       375 ~~  376 (395)
T PRK05732        375 MD  376 (395)
T ss_pred             Hc
Confidence            43

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=1.7e-41  Score=318.62  Aligned_cols=359  Identities=17%  Similarity=0.153  Sum_probs=240.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+|+++|+.|++.|++|+|+|+++.+  ....++..++++++++|+++|+++.+...+.+.....+++. 
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-   80 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD-   80 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence            479999999999999999999999999999999854  23345667999999999999999999888877777777642 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE-eCCeEEEEe-cCCc--EEeccEEE
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKLLHL-ADGT--ILKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~-~~~~v~v~~-~~g~--~~~ad~vV  155 (409)
                       +. ...+++....  .......+.+..+.+.|++.+  .++++++++++++++. +++.+.|++ .+|+  +++||+||
T Consensus        81 -g~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV  156 (392)
T PRK08243         81 -GR-RHRIDLTELT--GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA  156 (392)
T ss_pred             -CE-EEEecccccc--CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence             22 2334443221  122333566777777777653  4689999999999987 566677777 3664  68999999


Q ss_pred             ecCCCchHHHhhhCCCCCc-ccce--eeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          156 GCDGVNSIVAKWLGFKNPA-FVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++..... +...  ..+.+.... .+. ..........++.+.++.|.+++...+++.+......  .
T Consensus       157 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  232 (392)
T PRK08243        157 GCDGFHGVSRASIPAGALRTFERVYPFGWLGILAE-APP-VSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKV--E  232 (392)
T ss_pred             ECCCCCCchhhhcCcchhhceecccCceEEEEeCC-CCC-CCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCc--c
Confidence            9999999999998654322 2111  223332211 111 1112222223444555555555544444444322211  2


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+.+...+.+.+.+.....  ..++ .........++..     ...+++|..+||+|||||||.++|++|||+|+||+
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~  304 (392)
T PRK08243        233 DWSDERFWDELRRRLPPEDA--ERLV-TGPSIEKSIAPLR-----SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAAS  304 (392)
T ss_pred             cCChhHHHHHHHHhcCcccc--cccc-cCccccccceeee-----eceeccceeCCEEEEecccccCCCCcCcchhHHHH
Confidence            23445556666665543210  0000 0000000111111     12234677899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc---CchhHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS---DGKILNFLRDKILAS  389 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~~~~  389 (409)
                      ||..|++.|.+.+++              ....+|+.|++.|++++..++..+..+..+++.   ..++...+|+..|+.
T Consensus       305 Da~~La~~L~~~~~~--------------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (392)
T PRK08243        305 DVRYLARALVEFYRE--------------GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDY  370 (392)
T ss_pred             HHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence            999999999987664              236899999999999999999999999888774   455677788888876


Q ss_pred             Hhhh
Q 015303          390 FLVG  393 (409)
Q Consensus       390 ~~~~  393 (409)
                      ++.-
T Consensus       371 ~~~~  374 (392)
T PRK08243        371 LTSS  374 (392)
T ss_pred             HhcC
Confidence            5443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=2.2e-42  Score=322.13  Aligned_cols=336  Identities=24%  Similarity=0.263  Sum_probs=219.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccc--eeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRS--IVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~~~~~~   81 (409)
                      .+||+||||||+|+++|+.|+++|++|+||||++.+...+++..+++.++++|+.+|+++.+.....+...  ..+....
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            37999999999999999999999999999999999988889999999999999999999999887644332  2222210


Q ss_pred             CCCcccc---ccccccc-ccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-----cEEe
Q 015303           82 SGKPSSE---RSLKVQG-KYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-----TILK  150 (409)
Q Consensus        82 ~~~~~~~---~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~  150 (409)
                      .+.....   ....... .........+.|..|.+.|.+.+  .++++++++++++++++++++.+.+.++     ++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~  160 (356)
T PF01494_consen   81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE  160 (356)
T ss_dssp             TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred             CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence            1110000   0000000 11234456789999999999876  3589999999999999988876665543     2789


Q ss_pred             ccEEEecCCCchHHHhhhCCCCCcccce--eeEEEeecCCCCCCCC-CceeeeecCCcEEEEEecCC-CeEEEEEEecCC
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAFVGR--SAIRGYSDFKGSHGFE-PNFLQFFGKGLRSGFIPCDD-QTIYWFFTWTSS  226 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~  226 (409)
                      ||+||+|||.+|.+|+.++...+.....  ..+............. ............++++|..+ +...+.+.+...
T Consensus       161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  240 (356)
T PF01494_consen  161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFD  240 (356)
T ss_dssp             ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETT
T ss_pred             EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeecc
Confidence            9999999999999999997664333221  1222222211111111 12333334555568899988 333333333333


Q ss_pred             Cc--CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcc
Q 015303          227 SQ--DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIG  304 (409)
Q Consensus       227 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g  304 (409)
                      ..  ........+.+.+.+.+.+..   ..   ... .......++...     ....+|..+||+|||||||.++|++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAh~~~P~~G  308 (356)
T PF01494_consen  241 ESKEERPEEFSPEELFANLPEIFGP---DL---LET-EIDEISAWPIPQ-----RVADRWVKGRVLLIGDAAHAMDPFSG  308 (356)
T ss_dssp             TTTCCSTHCHHHHHHHHHHHHHHHT---CH---HHH-EEEEEEEEEEEE-----EEESSSEETTEEE-GGGTEEE-CCTS
T ss_pred             ccccccccccccccccccccccccc---cc---ccc-cccccccccccc-----ccccccccceeEEeccceeeeccccc
Confidence            22  111222223333333332211   11   111 222333333322     23346788999999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303          305 QGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI  364 (409)
Q Consensus       305 ~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~  364 (409)
                      ||+|+||+||..|++.|..+.++.             ...++|+.|+++|++++..+++.
T Consensus       309 qG~n~Ai~da~~La~~L~~~~~g~-------------~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  309 QGINMAIEDAAALAELLAAALKGE-------------ASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTS-------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHHhcCC-------------cHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999988754             55789999999999999998865

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=322.80  Aligned_cols=342  Identities=22%  Similarity=0.321  Sum_probs=235.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccc---ceeeee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLR---SIVATP   79 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~---~~~~~~   79 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+++.+.+.+..   ...+..
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~   85 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT   85 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence            35899999999999999999999999999999998888888999999999999999999999988765432   222222


Q ss_pred             cCCCCcccccccccccc------------cCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec
Q 015303           80 TISGKPSSERSLKVQGK------------YGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA  144 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~------------~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~  144 (409)
                      ...+..+..+.+.....            ..+...+.+.+..|.+.|.+.+   ++++++++++|++++.+++++++++.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~  165 (545)
T PRK06126         86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE  165 (545)
T ss_pred             cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence            22333333332221100            1122345688999999998765   46899999999999998888777764


Q ss_pred             C---Cc--EEeccEEEecCCCchHHHhhhCCCCCcccc-eeeEEEeecCCC---CCCCCCceeee-ecCCcEEEEEecCC
Q 015303          145 D---GT--ILKTKVLIGCDGVNSIVAKWLGFKNPAFVG-RSAIRGYSDFKG---SHGFEPNFLQF-FGKGLRSGFIPCDD  214 (409)
Q Consensus       145 ~---g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~  214 (409)
                      +   |+  ++++|+||+|||.+|.+|+.++........ ...+..++..+.   .......+..+ .+++....+.|..+
T Consensus       166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~  245 (545)
T PRK06126        166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDG  245 (545)
T ss_pred             ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECC
Confidence            3   53  689999999999999999999876544321 122222232221   11112223333 45555555666655


Q ss_pred             CeEEEEEE-ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEec
Q 015303          215 QTIYWFFT-WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAG  293 (409)
Q Consensus       215 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG  293 (409)
                      +.. |.+. ......  ....+.+.+.+.+.+.+.   ..+..     .+.....|.     .....+++|..+||+|+|
T Consensus       246 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~-----~i~~~~~w~-----~~~~~a~~~~~gRv~L~G  309 (545)
T PRK06126        246 RDE-WLFHQLRGGED--EFTIDDVDARAFVRRGVG---EDIDY-----EVLSVVPWT-----GRRLVADSYRRGRVFLAG  309 (545)
T ss_pred             CCe-EEEEEecCCCC--CCCCCHHHHHHHHHHhcC---CCCCe-----EEEeecccc-----hhheehhhhccCCEEEec
Confidence            443 4443 222221  123445556666665443   11100     000111111     123345578899999999


Q ss_pred             cCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          294 DALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       294 DAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      ||||.++|+.|||+|+||+||.+||++|...+++.             ..+.+|+.|+++|++++..++..+..+...+.
T Consensus       310 DAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-------------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~  376 (545)
T PRK06126        310 DAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-------------AGPALLDSYEAERRPIAARNTDYARRNADALG  376 (545)
T ss_pred             hhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-------------CcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999887653             44789999999999999999999987776554

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=3.4e-40  Score=308.74  Aligned_cols=356  Identities=15%  Similarity=0.158  Sum_probs=234.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+||+||||||+|+++|+.|+++|++|+|+||.+.+  ....++..++++++++|+++|+++++...+.+.....+.+. 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-   80 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD-   80 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence            479999999999999999999999999999999853  22345566899999999999999999887777776666542 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE-eCCeEEEEec-CCc--EEeccEEE
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKLLHLA-DGT--ILKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~-~~~~v~v~~~-~g~--~~~ad~vV  155 (409)
                       + ....+++.....  ........+..+.+.|.+.+  .++.++++++++.+.. +++.+.|++. +|+  ++++|+||
T Consensus        81 -~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI  156 (390)
T TIGR02360        81 -G-QRFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA  156 (390)
T ss_pred             -C-EEEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence             2 123333332211  11112345667777777654  2578999998888765 4556677775 775  68999999


Q ss_pred             ecCCCchHHHhhhCCCCCc-ccce--eeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCC-eEEEEEEecCCCcCcc
Q 015303          156 GCDGVNSIVAKWLGFKNPA-FVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKE  231 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~  231 (409)
                      +|||.+|.+|++++..... +.+.  ..|.+...... . .... ..+...+..+.++|..++ ...|++.......  .
T Consensus       157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  231 (390)
T TIGR02360       157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP-P-VSHE-LIYSNHERGFALCSMRSATRSRYYVQVPLTDK--V  231 (390)
T ss_pred             ECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC-C-CCCc-eEEEeCCCceEEEeccCCCcceEEEEcCCCCC--h
Confidence            9999999999998554322 2221  23344332111 1 1111 234444555667777533 2234444332211  1


Q ss_pred             cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303          232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al  311 (409)
                      ...+.+.+.+.+.+.+   .+.+.+++...........+..     ....++|..+||+|||||||.++|+.|||+|+||
T Consensus       232 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ai  303 (390)
T TIGR02360       232 EDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLR-----SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA  303 (390)
T ss_pred             hhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHH-----hhccccCccCCEEEEEccccCCCCCcCCchhHHH
Confidence            2333444555665544   3444433332211111111221     1223467889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC---chhHHHHHHHHHH
Q 015303          312 EDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD---GKILNFLRDKILA  388 (409)
Q Consensus       312 ~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~---~~~~~~~r~~~~~  388 (409)
                      +||..|+++|.+....              ....+|+.|++.|++++..+++.|+.+..+++..   .+....++..-|.
T Consensus       304 eDA~~La~~L~~~~~~--------------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (390)
T TIGR02360       304 SDVHYLYEALLEHYQE--------------GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELE  369 (390)
T ss_pred             HHHHHHHHHHHHHhcc--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence            9999999999875432              4578999999999999999999999988887622   3444455555555


Q ss_pred             HHh
Q 015303          389 SFL  391 (409)
Q Consensus       389 ~~~  391 (409)
                      .++
T Consensus       370 ~~~  372 (390)
T TIGR02360       370 YLL  372 (390)
T ss_pred             HHh
Confidence            433

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=5.5e-34  Score=267.25  Aligned_cols=321  Identities=17%  Similarity=0.181  Sum_probs=209.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      |||+||||||||+++|+.|++.|++|+|+|+.. +....|+..+++   ..++.+++++++...  .+.+..++... +.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~-~~   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPS-RV   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCC-Cc
Confidence            799999999999999999999999999999982 344557777776   567788887776543  34455555432 21


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecC------C--cEEeccEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD------G--TILKTKVL  154 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~------g--~~~~ad~v  154 (409)
                      . .....+.   . ......++|..|++.|.+++  .+++++.+ +|+++..+++.+.+++.+      +  .+++||+|
T Consensus        74 ~-~~~~~~~---~-~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~V  147 (388)
T TIGR02023        74 P-IKVTIPS---E-DGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVV  147 (388)
T ss_pred             e-eeeccCC---C-CCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEE
Confidence            1 1111110   0 11123589999999999876  36788655 699998888888887663      2  37999999


Q ss_pred             EecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeee----cCCcEEEEEecCCCeEEEEEEecCCCc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFF----GKGLRSGFIPCDDQTIYWFFTWTSSSQ  228 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~  228 (409)
                      |+|||.+|.+|+.++.+.... ...++...+..+.. .... .....++    .++.+.|++|.++. .........   
T Consensus       148 I~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~---  222 (388)
T TIGR02023       148 IGADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT---  222 (388)
T ss_pred             EECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC---
Confidence            999999999999998764322 11223333322221 1112 2223333    34568899999854 333222111   


Q ss_pred             CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303          229 DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC  308 (409)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~  308 (409)
                         ...+.+++.+.+.+.+. +        ...+.......++...     ..+++..+++++||||||.++|++|+|++
T Consensus       223 ---~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~ip~~-----~~~~~~~~~v~lvGDAAg~v~P~tG~GI~  285 (388)
T TIGR02023       223 ---HGFDAKQLQANLRRRAG-L--------DGGQTIRREAAPIPMK-----PRPRWDFGRAMLVGDAAGLVTPASGEGIY  285 (388)
T ss_pred             ---CCCCHHHHHHHHHHhhC-C--------CCceEeeeeeEecccc-----ccccccCCCEEEEeccccCcCCcccccHH
Confidence               12234444444544332 0        0000001111111111     12256778999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc
Q 015303          309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS  374 (409)
Q Consensus       309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~  374 (409)
                      +||.+|..+|+.|.+++.++              ....|+.|++.++......+..+..+..++..
T Consensus       286 ~A~~sg~~aa~~i~~~l~~~--------------~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~  337 (388)
T TIGR02023       286 FAMKSGQMAAQAIAEYLQNG--------------DATDLRHYERKFMKLYGTTFRVLRVLQMVYYR  337 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999988642              14679999999998887777777777777643

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=6.2e-34  Score=268.64  Aligned_cols=334  Identities=15%  Similarity=0.129  Sum_probs=209.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||||+++|+.|+++|++|+|+||... ....|+..++.   ..++++|+++.+...  .+....+.... 
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~lgl~~~~~~~--~i~~~~~~~p~-  110 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEFDLPLDIIDR--KVTKMKMISPS-  110 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhhcCcHHHHHH--HhhhheEecCC-
Confidence            358999999999999999999999999999999853 44567777764   667788887766442  23344444321 


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe---CCeEEEEecC-------C--cE
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLAD-------G--TI  148 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~---~~~v~v~~~~-------g--~~  148 (409)
                      +.   .+.+...... .....+++|..|++.|++++  .+++++.+ ++++++..   ++.+.|++.+       +  .+
T Consensus       111 ~~---~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~  185 (450)
T PLN00093        111 NV---AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT  185 (450)
T ss_pred             ce---EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence            11   1222211110 12223689999999999876  46788765 57777643   2446666532       3  47


Q ss_pred             EeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeeec----CCcEEEEEecCCCeEEEEEE
Q 015303          149 LKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFFG----KGLRSGFIPCDDQTIYWFFT  222 (409)
Q Consensus       149 ~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~~  222 (409)
                      ++||+||+|||.+|.+|+.++....  .....+...+..+.. .... .....+++    ++.+.|++|.++. ....+.
T Consensus       186 v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g  262 (450)
T PLN00093        186 LEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTG  262 (450)
T ss_pred             EEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEE
Confidence            9999999999999999999987532  111222222222221 1112 22344443    5568899999964 333332


Q ss_pred             ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCC
Q 015303          223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPD  302 (409)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~  302 (409)
                      ....      ..+...+.+.+.+.+.       ..+...+.......++...     ...++..++++|||||||.++|+
T Consensus       263 ~~~~------~~~~~~~~~~l~~~~~-------~~l~~~~~~~~~~~~ip~~-----~~~~~~~~~vlLvGDAAg~v~P~  324 (450)
T PLN00093        263 TVVN------KPAIKKYQRATRNRAK-------DKIAGGKIIRVEAHPIPEH-----PRPRRVRGRVALVGDAAGYVTKC  324 (450)
T ss_pred             EccC------CCChHHHHHHHHHHhh-------hhcCCCeEEEEEEEEcccc-----cccceeCCCcEEEeccccCCCcc
Confidence            1111      1122233333332211       1111111112222222221     12256788999999999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhH
Q 015303          303 IGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKIL  379 (409)
Q Consensus       303 ~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~  379 (409)
                      +|+||+.||.++..+|+.+.+++.+++          .+.....|+.|++.++......+..+..+.+++..+++..
T Consensus       325 tGeGI~~Am~sg~~AAe~i~~~~~~g~----------~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~~  391 (450)
T PLN00093        325 SGEGIYFAAKSGRMCAEAIVEGSENGT----------RMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPAR  391 (450)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCC----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            999999999999999999999876421          0123567899999888888888888887777776544433

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=100.00  E-value=1e-33  Score=256.84  Aligned_cols=288  Identities=22%  Similarity=0.237  Sum_probs=189.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      |||+||||||+|+++|+.|++.|++|+|+||+..+....++..+++.+.+.+...+.. ..    .......++.. .+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~~~~~~~~~~~-~~~   74 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IV----NLVRGARFFSP-NGD   74 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hh----hheeeEEEEcC-CCc
Confidence            6999999999999999999999999999999988777778888888777776655421 11    11222233222 221


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~  161 (409)
                      .. .....      ......++|..|.+.|.+.+  .+++++++++|+++..+++.+.+.+.++ .++++|+||+|||.+
T Consensus        75 ~~-~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        75 SV-EIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR  147 (295)
T ss_pred             EE-EeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence            11 11111      23345789999999998876  3689999999999998888877766554 579999999999999


Q ss_pred             hHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeec----CCcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303          162 SIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA  237 (409)
Q Consensus       162 S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      |.+|+.++...........+...+..+...........+.+    ++.+.+++|+++++..+.+....+.    ...+.+
T Consensus       148 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~  223 (295)
T TIGR02032       148 SIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLK  223 (295)
T ss_pred             hHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHH
Confidence            99999887654322222333334443322222233344443    3568899999998765555544322    123333


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHH
Q 015303          238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVL  317 (409)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~l  317 (409)
                      +..+.+.+.   .+.     +..........++....    ....++..+||+++|||||+++|++|||||+||+||..|
T Consensus       224 ~~~~~~~~~---~~~-----l~~~~~~~~~~~~~~~~----~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a  291 (295)
T TIGR02032       224 KYLKDFLAR---RPE-----LKDAETVEVIGAPIPIG----RPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA  291 (295)
T ss_pred             HHHHHHHHh---Ccc-----cccCcEEeeeceeeccC----CCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence            333333332   221     11111112222222222    123366789999999999999999999999999999999


Q ss_pred             HHHH
Q 015303          318 ARCI  321 (409)
Q Consensus       318 a~~l  321 (409)
                      |++|
T Consensus       292 a~~~  295 (295)
T TIGR02032       292 AEVI  295 (295)
T ss_pred             HhhC
Confidence            9875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11445 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.1e-33  Score=261.20  Aligned_cols=329  Identities=18%  Similarity=0.113  Sum_probs=201.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC----CcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR----VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||||+++|+.|++. ++|+|+|+.+.+.    ...|+..+++++.+.|+++|++........+ .....   
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~---   76 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAV---   76 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-cccee---
Confidence            7999999999999999999999 9999999987543    3458899999999999999985321110000 00000   


Q ss_pred             CCCCcccccccccc-cccCCccceeccHHHHHHHHHhhC-CCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEE
Q 015303           81 ISGKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLI  155 (409)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV  155 (409)
                            ..+++... ..........++|..|++.|.+.. .++++++++++++++++++++.|++ .+|+  +++||+||
T Consensus        77 ------~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV  150 (351)
T PRK11445         77 ------KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLV  150 (351)
T ss_pred             ------eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEE
Confidence                  01111100 000112334699999999998765 4689999999999998888888876 4564  68999999


Q ss_pred             ecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeee---cCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          156 GCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFF---GKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++.... ......+..++....+.+   ....++   ....+.|.+|.++... ....+ +.      
T Consensus       151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~-~~------  218 (351)
T PRK11445        151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEKHPVP---FYSCIFDNEITDCYSWSISKDGYFI-FGGAY-PM------  218 (351)
T ss_pred             ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCCCCCC---CcceEEeccCCCceEEEeCCCCcEE-ecccc-cc------
Confidence            999999999999865422 122223333333222111   111112   1234677788765322 11111 11      


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                       .+.....+.+.+.+........+.+...  .   ....   .+..........+|+++||||||.++|++|+|++.||+
T Consensus       219 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~  289 (351)
T PRK11445        219 -KDGRERFETLKEKLSAFGFQFGKPVKTE--A---CTVL---RPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALD  289 (351)
T ss_pred             -cchHHHHHHHHHHHHhcccccccccccc--c---cccc---CcccccccccCCCCEEEEEcccCccCCccCccHHHHHH
Confidence             0111112222222222111111111110  0   0000   01100000224589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS  389 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  389 (409)
                      ||..|++.|.+..                  ...++.|++.++.....+...      .+..+--+..++|.+++++
T Consensus       290 sa~~la~~l~~~~------------------~~~~~~y~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  342 (351)
T PRK11445        290 SARILSEVLNKQP------------------EKLNTAYWRKTRKLRLKLFGK------ILKSPFMYNPALRKLIMRS  342 (351)
T ss_pred             hHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHHHHHH------HhcChhhhhHHHHHHHHHh
Confidence            9999999998733                  356889998887766444322      2344445667888888875

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=7.1e-33  Score=259.45  Aligned_cols=332  Identities=16%  Similarity=0.129  Sum_probs=204.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||||+++|+.|+++|++|+|+||... ....|+..+++   ..++++|+++.+...  .+....++... + 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~~~~cg~~i~~---~~l~~~g~~~~~~~~--~i~~~~~~~p~-~-   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-NAKPCGGAIPL---CMVDEFALPRDIIDR--RVTKMKMISPS-N-   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hhHhhccCchhHHHh--hhceeEEecCC-c-
Confidence            5999999999999999999999999999999754 34557777764   667888887665442  23344443221 1 


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE---eCCeEEEEe--cC-----C--cEEe
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE---SGHFKLLHL--AD-----G--TILK  150 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~---~~~~v~v~~--~~-----g--~~~~  150 (409)
                        ....+...... ......++|..|++.|.+++  .+++++.++ +++++.   .++.+.|++  .+     |  .+++
T Consensus        73 --~~~~~~~~~~~-~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~  148 (398)
T TIGR02028        73 --IAVDIGRTLKE-HEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE  148 (398)
T ss_pred             --eEEEeccCCCC-CCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence              11222111111 11123689999999999876  368887774 777653   234455543  22     3  3799


Q ss_pred             ccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeeec----CCcEEEEEecCCCeEEEEEEec
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFFG----KGLRSGFIPCDDQTIYWFFTWT  224 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~  224 (409)
                      ||+||+|||.+|.+|+.++....  .....+...+..+.. .... .....+++    ++++.|++|.++. ....+...
T Consensus       149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~  225 (398)
T TIGR02028       149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV  225 (398)
T ss_pred             eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC
Confidence            99999999999999999986532  112222222332221 1112 22334443    5668999999854 33322211


Q ss_pred             CCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcc
Q 015303          225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIG  304 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g  304 (409)
                       .     .....    +.+++.+...   ....+.......+...++....     .+++..+++++||||||.++|++|
T Consensus       226 -~-----~~~~~----~~~~~~l~~~---~~~~~~~~~~~~~~~~~ip~~~-----~~~~~~~~~llvGDAAg~v~P~tG  287 (398)
T TIGR02028       226 -A-----AKPEI----KRLQSGIRAR---AAGKVAGGRIIRVEAHPIPEHP-----RPRRVVGRVALVGDAAGYVTKCSG  287 (398)
T ss_pred             -C-----CCccH----HHHHHhhhhh---hhhccCCCcEEEEEEEeccccc-----cccEECCCEEEEEcCCCCCCcccc
Confidence             1     01111    2233322211   0000111111122222222211     225667899999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhH
Q 015303          305 QGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKIL  379 (409)
Q Consensus       305 ~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~  379 (409)
                      +||+.||.++..+|+.+.+++..++.          ......|+.|++.++......+..+..+.+++..++...
T Consensus       288 eGI~~A~~sg~~aa~~i~~~~~~~~~----------~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (398)
T TIGR02028       288 EGIYFAAKSGRMCAEAIVEESRLGGA----------VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSNAGR  352 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCC----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            99999999999999999998864310          124577999999888877777777777777766544333

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=100.00  E-value=9.3e-32  Score=252.19  Aligned_cols=325  Identities=19%  Similarity=0.148  Sum_probs=204.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccc-eeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFA-FTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++|||+||||||||++||+.|++.|++|+|+||+..+..+.++ ..+++..++.+......+    .........++.. 
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~-   76 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFP-   76 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEec-
Confidence            4699999999999999999999999999999999998766555 666664444332221111    1112222233222 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecC-CcEEeccEEEecC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD-GTILKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~-g~~~~ad~vV~Ad  158 (409)
                      ...  ..+..+      ....+.++|..|+++|++.+  .+++++.+++++.+..+++++.+.... +.++++++||+||
T Consensus        77 ~~~--~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~Ad  148 (396)
T COG0644          77 GEK--VAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDAD  148 (396)
T ss_pred             CCc--eEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECC
Confidence            111  111111      13467899999999999876  478999999999999988775555444 4689999999999


Q ss_pred             CCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeee-----ecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303          159 GVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQF-----FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE  233 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |.+|.+++.++.. ... +.....+.......+........+     ...+++.|++|.+++.+...+...... .. ..
T Consensus       149 G~~s~l~~~lg~~-~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~-~~  224 (396)
T COG0644         149 GVNSALARKLGLK-DRK-PEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PS-LS  224 (396)
T ss_pred             CcchHHHHHhCCC-CCC-hhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cC-CC
Confidence            9999999999888 211 111112222211111111111222     245778999999999776666655443 11 11


Q ss_pred             cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccc-cCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGN-ISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..    . +.+++|...+. ....+......+.....+....+.    .. +..+++++|||||++++|++|+|+..||.
T Consensus       225 ~~----~-~~l~~f~~~~~-~~~~~~~~~~~~~~~~~ip~~g~~----~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~  294 (396)
T COG0644         225 PF----L-ELLERFKEHPA-IRKLLLGGKILEYAAGGIPEGGPA----SRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIK  294 (396)
T ss_pred             ch----H-HHHHHHHhCcc-cchhccCCceEEEeeeecccCCcC----CCccccCCEEEEeccccCCCCcccCcHHHHHH
Confidence            11    1 22222222221 111111112222222222222222    13 57789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVG  369 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~  369 (409)
                      +|..+|+.|.++..+              . ...|..|++.++.....-........
T Consensus       295 sg~~Aa~~i~~~~~~--------------~-~~~l~~Y~~~~~~~~~~~~~~~~~~~  336 (396)
T COG0644         295 SGKLAAEAIAEALEG--------------G-EEALAEYERLLRKSLAREDLKSLRLL  336 (396)
T ss_pred             HHHHHHHHHHHHHHc--------------C-hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999998764              1 56777788777765555444443333

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=100.00  E-value=2.5e-32  Score=274.25  Aligned_cols=324  Identities=20%  Similarity=0.179  Sum_probs=212.9

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcC--chhHHHhccccccceeeeecC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG--IGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +|+||||||+||++|+.|++.  |++|+|+||++.....|+++.+++++++.|+.++  +...+......+....+..  
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF--   79 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence            899999999999999999998  8999999999887778899999999998888776  3333333333333344332  


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .+...     ...    ...+..+.|..|.+.|++++.  +++++++++|+++...            ..++|+||+|||
T Consensus        80 ~g~~~-----~~~----g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG  138 (765)
T PRK08255         80 KGRRI-----RSG----GHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDG  138 (765)
T ss_pred             CCEEE-----EEC----CeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCC
Confidence            12110     001    122346899999999998763  6899999998776421            147999999999


Q ss_pred             CchHHHhhhCCCC-Cc-c--cceeeEEEeecCCCCCCCCCcee-eeecCCc-EEEEEecCCCeEEEEEEecCCCcCc--c
Q 015303          160 VNSIVAKWLGFKN-PA-F--VGRSAIRGYSDFKGSHGFEPNFL-QFFGKGL-RSGFIPCDDQTIYWFFTWTSSSQDK--E  231 (409)
Q Consensus       160 ~~S~vr~~l~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~--~  231 (409)
                      .+|.+|+.+.... +. .  .....|.+......    ...+. .....+. ....+|..++..+|++....+....  .
T Consensus       139 ~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~----~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~  214 (765)
T PRK08255        139 LNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFD----AFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGL  214 (765)
T ss_pred             CCHHHHHHHHhhcCCceecCCCceEEecCCCccc----ceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCC
Confidence            9999999763211 11 1  11122332211111    00110 0112221 2345787777666666553221111  1


Q ss_pred             cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCc----EEEeccCcCCCCCCcccch
Q 015303          232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS----VCVAGDALHPMTPDIGQGG  307 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~lvGDAA~~~~P~~g~G~  307 (409)
                      ...+.+...+.+.+.+..+.+.. .++..........|....    ....++|..+|    ++|+|||||.++|+.|||+
T Consensus       215 ~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~----~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~  289 (765)
T PRK08255        215 DEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFP----RVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT  289 (765)
T ss_pred             ccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecc----eeccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence            22355667777888777665432 222221110111121111    11234788888    9999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc
Q 015303          308 CAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG  376 (409)
Q Consensus       308 ~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~  376 (409)
                      |+||+||..|+++|....               ..++.+|+.|++.|++++..++..++.+..++...+
T Consensus       290 ~~aieDa~~La~~L~~~~---------------~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~  343 (765)
T PRK08255        290 KLALEDAIELARCLHEHP---------------GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENVE  343 (765)
T ss_pred             HHHHHHHHHHHHHHHHcc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecc
Confidence            999999999999998731               156899999999999999999999998888886543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-30  Score=225.64  Aligned_cols=381  Identities=15%  Similarity=0.115  Sum_probs=279.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccc-cccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQ-QLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~~   82 (409)
                      .+||+|||||.+|.++|+.|+|.|.+|.||||+-.....--|..++|.+...|.++|+.|.++.... ...++.++.  +
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk--~  122 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK--D  122 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe--C
Confidence            5799999999999999999999999999999998777677789999999999999999998877543 344555553  3


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEeccEE
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVL  154 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~v  154 (409)
                      ++. ..++++.......+.....+..+|.+.|++.+   +++++..++ |+++-++++.   |+...++|+  +..|.+-
T Consensus       123 gk~-v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApLT  200 (509)
T KOG1298|consen  123 GKE-VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT  200 (509)
T ss_pred             Cce-eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence            332 34555544444456677788899999998865   678888775 4444444433   333334444  5678999


Q ss_pred             EecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED  234 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |.|||..|.+||.+-.+.... -..+++|++......+.+...+..+++-..+.++|++...+.+.+-......+   ..
T Consensus       201 vVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P---si  276 (509)
T KOG1298|consen  201 VVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP---SI  276 (509)
T ss_pred             EEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC---cc
Confidence            999999999999985533321 22345666555444455667778888777889999999888777777665443   33


Q ss_pred             ChHHHHHHHHHHhC-CCChHHHHHHHc-CCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          235 HSAELKQFVLGKLH-DLPAQVKAVIEK-TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       235 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ...+++.++.+.+. ..++.+++.+.. ...+.+...|....++     +.....+++++|||..+-||++|.||..|+.
T Consensus       277 ~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa-----~~~~~~G~illGDAfNMRHPltggGMtV~l~  351 (509)
T KOG1298|consen  277 ANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPA-----TLNDKKGVILLGDAFNMRHPLTGGGMTVALS  351 (509)
T ss_pred             cchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCC-----CcCCCCceEEEcccccccCCccCCceEeehh
Confidence            44566777777776 666666665543 3333444444444333     3456788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc-CchhHHHHHHHHHHHHh
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS-DGKILNFLRDKILASFL  391 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~r~~~~~~~~  391 (409)
                      |+..|-+.|.....          ..+.+.+.+.+.+|...|++....+.-++..++.++.. .+.....+|...+.++-
T Consensus       352 Di~lLr~ll~pl~d----------L~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~  421 (509)
T KOG1298|consen  352 DIVLLRRLLKPLPD----------LSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLK  421 (509)
T ss_pred             HHHHHHHHhccccc----------cccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            99999999877322          23366888999999999999999999999999999986 78888899999988654


Q ss_pred             hhhh--cccccCCCCccc
Q 015303          392 VGLL--LKKADFDCGNLT  407 (409)
Q Consensus       392 ~~~~--~~~~~~~~g~~~  407 (409)
                      ..=.  .+...++.|-.|
T Consensus       422 ~GG~c~sGpv~lLsGlnP  439 (509)
T KOG1298|consen  422 RGGFCVSGPVALLSGLNP  439 (509)
T ss_pred             cCCccccchHHHhcCCCC
Confidence            3322  344555555544

>PRK10015 oxidoreductase; Provisional

Probab=100.00  E-value=1.4e-30  Score=245.72  Aligned_cols=346  Identities=16%  Similarity=0.128  Sum_probs=197.5

Q ss_pred             CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-ccceeccccHHHHHHHcCchh-HHHhccccccceee
Q 015303            1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-GFAFTVWTNAWKALDAVGIGN-SLRQQHQQLRSIVA   77 (409)
Q Consensus         1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~~~   77 (409)
                      |+ .+|||+||||||||+++|+.|++.|++|+|+||.+.+..+ .++..++....+.+.. ++.. ...........+.+
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~   79 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISF   79 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEE
Confidence            54 3599999999999999999999999999999999887654 3455555433332210 1211 00011111112222


Q ss_pred             eecCCCCcccccccccccc-cCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303           78 TPTISGKPSSERSLKVQGK-YGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL  154 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  154 (409)
                      ... .+.  ..+++..... ......+.+.|..|+++|.+++  .+++++.+++|+.+..+++++.+...++.+++||+|
T Consensus        80 ~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~V  156 (429)
T PRK10015         80 LTE-ESA--VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVV  156 (429)
T ss_pred             EeC-CCc--eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEE
Confidence            221 111  1222221110 0012356789999999998866  478999999999998877776644445567999999


Q ss_pred             EecCCCchHHHhhhCCCCCcccceeeEEEe---ecCCCCC--------CCCCceeeeec--CCc---EEEEEecCCCeEE
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGY---SDFKGSH--------GFEPNFLQFFG--KGL---RSGFIPCDDQTIY  218 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~--~~~---~~~~~p~~~~~~~  218 (409)
                      |+|||.+|.+++.++........ ....+.   ...+...        .....+..+++  .++   ..++++. ++.+.
T Consensus       157 I~AdG~~s~v~~~lg~~~~~~~~-~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d~v~  234 (429)
T PRK10015        157 ILADGVNSMLGRSLGMVPASDPH-HYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KDSIS  234 (429)
T ss_pred             EEccCcchhhhcccCCCcCCCcC-eEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CCcEE
Confidence            99999999999998774332222 111222   2221110        00001111111  011   1223333 33343


Q ss_pred             EEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceE--eecccccCcccccccccCCCcEEEeccCc
Q 015303          219 WFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSII--SSRLQYRQPQEVLWGNISRGSVCVAGDAL  296 (409)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~lvGDAA  296 (409)
                      ..+.+...... ....++.++.    +.+. .++.+.+++......+..  ..|.....    ..++...+++++|||||
T Consensus       235 vGv~~~~~~~~-~~~~~~~~~l----~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~----~~~~~~~~g~llvGDAA  304 (429)
T PRK10015        235 LGLVCGLGDIA-HAQKSVPQML----EDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLA----MVPQLVNDGVMIVGDAA  304 (429)
T ss_pred             EEEEEehhhhc-cCCCCHHHHH----HHHh-hChHHHHHhcCCEEEEEeeEEcccCCcc----cCCccccCCeEEEeccc
Confidence            33322211110 1223333333    3332 355566666543322221  11211110    11256789999999999


Q ss_pred             CCCCC--CcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHhheeec
Q 015303          297 HPMTP--DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWR-CFELISIAYLVGSIQQ  373 (409)
Q Consensus       297 ~~~~P--~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~s~~~~~~~~  373 (409)
                      ++++|  ++|+||+.||.++..+|+.+.+++..+|            .....|+.|++.++.. +.+-....+.+..++.
T Consensus       305 g~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d------------~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~  372 (429)
T PRK10015        305 GFCLNLGFTVRGMDLAIASAQAAATTVIAAKERAD------------FSASSLAQYKRELEQSCVMRDMQHFRKIPALME  372 (429)
T ss_pred             ccccccCccccchhHHHHHHHHHHHHHHHHHhcCC------------CccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence            99985  6999999999999999999999887532            4467789998887755 4343444555555554


Q ss_pred             c
Q 015303          374 S  374 (409)
Q Consensus       374 ~  374 (409)
                      .
T Consensus       373 ~  373 (429)
T PRK10015        373 N  373 (429)
T ss_pred             C
Confidence            4

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.98  E-value=2.9e-31  Score=232.32  Aligned_cols=369  Identities=17%  Similarity=0.209  Sum_probs=261.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCcCC---------cccceeccccHHHHHHHcCchhHHHh-cc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESLRV---------TGFAFTVWTNAWKALDAVGIGNSLRQ-QH   69 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~~~---------~~~~~~~~~~~~~~l~~~gl~~~~~~-~~   69 (409)
                      .|||+||||||+|+++|..|...    .++|.|+|-...+.-         ..+-..+++.+...++.+|.|+.+.. +.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~  115 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY  115 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence            68999999999999999999853    479999998744311         12446688899999999999987765 44


Q ss_pred             ccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHH-----hhCCCceEEeCCeEEEEEEe--------C
Q 015303           70 QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLA-----KELPSGTIRYSSQVVSIEES--------G  136 (409)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~-----~~~~~~~i~~~~~v~~i~~~--------~  136 (409)
                      .+..++..++.-...   .+.++...- .....+++....+...|+     .+.+++++....++..+...        +
T Consensus       116 ~~~~~~~v~Ds~s~a---~I~~~~d~~-~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~  191 (481)
T KOG3855|consen  116 QKFSRMLVWDSCSAA---LILFDHDNV-GIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG  191 (481)
T ss_pred             ccccceeeecccchh---hhhhccccc-cccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence            555666665543322   222322211 112234555545554444     34467899999998887653        2


Q ss_pred             CeEEEEecCCcEEeccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCC-CCCCCCceeeeecCCcEEEEEecCC
Q 015303          137 HFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKG-SHGFEPNFLQFFGKGLRSGFIPCDD  214 (409)
Q Consensus       137 ~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~  214 (409)
                      ..+.+++.+|..+.+|++|+|||.+|.+|+..++..... +.+++.++...+.. .......|+.|+..|. ++++|+++
T Consensus       192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~d  270 (481)
T KOG3855|consen  192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLSD  270 (481)
T ss_pred             ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeeccccc
Confidence            347888999999999999999999999999998887664 67777787777665 4444567888888884 78999998


Q ss_pred             CeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHH------H-----------HHHHcC-CCCc------e--Ee
Q 015303          215 QTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQV------K-----------AVIEKT-PLDS------I--IS  268 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~-~~~~------~--~~  268 (409)
                      +-........++........+++.+.+.+...|..-.+.+      .           .++... ...+      +  ..
T Consensus       271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~  350 (481)
T KOG3855|consen  271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG  350 (481)
T ss_pred             ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence            8553333333333334466777777777666655111110      0           111110 0001      1  11


Q ss_pred             ecccccCccccc-ccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh-ccCCCCCCchhhhhhhHHHH
Q 015303          269 SRLQYRQPQEVL-WGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK-TKQGVGEEDEEEFNKRVEMG  346 (409)
Q Consensus       269 ~~~~~~~~~~~~-~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~  346 (409)
                      ...+..+|.... ++.|..+|+.++|||||.++|+.|||.|++..|...|...|.++.. +.|+           .+..-
T Consensus       351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~Dl-----------gS~~~  419 (481)
T KOG3855|consen  351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDL-----------GSVEH  419 (481)
T ss_pred             ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccc-----------cchhh
Confidence            122333343322 3368889999999999999999999999999999999999999987 6766           34788


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          347 LKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       347 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      |+.|+.+|.+....+.-....+.++|+.+.|.+..+|.++|.
T Consensus       420 L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~  461 (481)
T KOG3855|consen  420 LEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ  461 (481)
T ss_pred             hhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence            999999999999999999999999999999999999998887

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.97  E-value=2.8e-29  Score=237.24  Aligned_cols=342  Identities=17%  Similarity=0.149  Sum_probs=195.7

Q ss_pred             CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc-cceeccccHHHHHHHcCchhHHHhc-----ccccc
Q 015303            1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG-FAFTVWTNAWKALDAVGIGNSLRQQ-----HQQLR   73 (409)
Q Consensus         1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~   73 (409)
                      |+ .+|||+||||||||+++|+.|+++|++|+|+||.+.++.+. ++..++....   +.+  ...+...     .....
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~~~~~~~~~~~   75 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADSAPVERLITHE   75 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhcCcccceeeee
Confidence            54 36999999999999999999999999999999998876543 3444444332   222  1111110     01111


Q ss_pred             ceeeeecCCCCccccccccccc-ccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEe
Q 015303           74 SIVATPTISGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILK  150 (409)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  150 (409)
                      ...+... .+.  ..+++.... .......+.+.|..|+++|.+.+  .+++++.+++|+++..+++.+.+...++.+++
T Consensus        76 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~  152 (428)
T PRK10157         76 KLAFMTE-KSA--MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIE  152 (428)
T ss_pred             eEEEEcC-CCc--eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEE
Confidence            1222211 111  112221111 01122356789999999998876  47899999999999887777655556677899


Q ss_pred             ccEEEecCCCchHHHhhhCCCCCcccceeeEEE--eecCCCCC--------CCCCceeeeec---CCc--EEEEEecCCC
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRG--YSDFKGSH--------GFEPNFLQFFG---KGL--RSGFIPCDDQ  215 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~---~~~--~~~~~p~~~~  215 (409)
                      ||+||+|||.+|.+++.++...+......++..  ....+...        ........+.+   .+.  ..++++. ++
T Consensus       153 A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~  231 (428)
T PRK10157        153 AKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-EN  231 (428)
T ss_pred             CCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CC
Confidence            999999999999999998876443333333211  11121100        00111122221   110  1133343 33


Q ss_pred             eEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEe--ecccccCcccccccccCCCcEEEec
Q 015303          216 TIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIIS--SRLQYRQPQEVLWGNISRGSVCVAG  293 (409)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~lvG  293 (409)
                      .....+....... .....++.++.    +.+.. .+.+...+......+...  .|.....    ..++...+++++||
T Consensus       232 ~~svG~~~~~~~~-~~~~~~~~~~l----~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~----~~~~~~~~g~llvG  301 (428)
T PRK10157        232 TLSLGLVCGLHHL-HDAKKSVPQML----EDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGIN----MLPELVGDGVLIAG  301 (428)
T ss_pred             eEEEEEEEehHHh-cccCCCHHHHH----HHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcc----cCCceecCCeEEEe
Confidence            3333332222211 11223333333    33322 344444443322111111  1111000    11245679999999


Q ss_pred             cCcCCCCC--CcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303          294 DALHPMTP--DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSI  371 (409)
Q Consensus       294 DAA~~~~P--~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~  371 (409)
                      |||++++|  ++|+||+.||.++..+|+.+.++++.+            +.....|..|++..+..+-.-....+.+..+
T Consensus       302 DAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------------~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~  369 (428)
T PRK10157        302 DAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------------DFSKQKLAEYRQHLESGPLRDMRMYQKLPAF  369 (428)
T ss_pred             cccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC------------CcchhhHHHHHHHHHHhHHHHHHHHhccHHH
Confidence            99999998  599999999999999999999998764            2456789999887766653433444334444


Q ss_pred             ec
Q 015303          372 QQ  373 (409)
Q Consensus       372 ~~  373 (409)
                      +.
T Consensus       370 ~~  371 (428)
T PRK10157        370 LD  371 (428)
T ss_pred             hc
Confidence            43

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.97  E-value=1.1e-28  Score=232.30  Aligned_cols=304  Identities=19%  Similarity=0.210  Sum_probs=184.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKP   85 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      ||+||||||||+++|+.|++.|++|+|+|+.+.... .....+++.   .++.+++.+.+.   ..+.....+...... 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~-   72 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVE---HVWPDVYEYRFPKQP-   72 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHh---hcCCCceEEecCCcc-
Confidence            899999999999999999999999999999865321 223334432   234444322221   122221111111111 


Q ss_pred             ccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCch
Q 015303           86 SSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                         ...       ...+..+++..|.+.|.+.+.  +++++ .++|+.+..+ ++.+.|++.+|.+++|++||+|||.+|
T Consensus        73 ---~~~-------~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        73 ---RKL-------GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ---hhc-------CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence               001       233446899999999988663  56664 6688888877 566888888888899999999999999


Q ss_pred             HHHhhhCCCCCcccceeeEEEe-ecCCCCC-CCCC-ceeeee-c--------CCc--EEEEEecCCCeEEEEEEecCCCc
Q 015303          163 IVAKWLGFKNPAFVGRSAIRGY-SDFKGSH-GFEP-NFLQFF-G--------KGL--RSGFIPCDDQTIYWFFTWTSSSQ  228 (409)
Q Consensus       163 ~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~-~--------~~~--~~~~~p~~~~~~~~~~~~~~~~~  228 (409)
                      .+++......   .+.....++ +....+. .... .++.+. .        ...  +++++|.+++++.+..+..... 
T Consensus       142 ~~~~~~~~~~---~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~-  217 (388)
T TIGR01790       142 LVQYVRFPLN---VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADR-  217 (388)
T ss_pred             hcccccCCCC---ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCC-
Confidence            6654321111   111222333 2222111 1111 111111 1        122  7889999988764433221111 


Q ss_pred             CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303          229 DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC  308 (409)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~  308 (409)
                         ...+.+.+++.+.+.+........++++    .+....|+....+       ...+|+++||||||.++|++|+|++
T Consensus       218 ---~~~~~~~~~~~l~~~~~~~g~~~~~i~~----~~~~~iP~~~~~~-------~~~~rv~liGdAAg~~~P~tG~Gi~  283 (388)
T TIGR01790       218 ---PALPRDRLRQRILARLNAQGWQIKTIEE----EEWGALPVGLPGP-------FLPQRVAAFGAAAGMVHPTTGYSVA  283 (388)
T ss_pred             ---CCCCHHHHHHHHHHHHHHcCCeeeEEEe----eeeEEEecccCCC-------ccCCCeeeeechhcCcCCcccccHH
Confidence               2345566777777666543322211111    1222233322211       2578999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHH
Q 015303          309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFE  360 (409)
Q Consensus       309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~  360 (409)
                      .|+.+|..+|+.|.+++..              ....+++.|++.++++...
T Consensus       284 ~al~~a~~la~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       284 RALSDAPGLAAAIAQALCQ--------------SSELATAAWDGLWPTERRR  321 (388)
T ss_pred             HHHHHHHHHHHHHHHHhcc--------------CHHHHHHHHHHhchHHHHH
Confidence            9999999999999998764              2367788887666655554

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02697 lycopene epsilon cyclase

Probab=99.97  E-value=4.6e-28  Score=230.70  Aligned_cols=319  Identities=17%  Similarity=0.226  Sum_probs=199.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||||+++|..|++.|++|+|+|+.....   +..+++.   ..++.+|+.+.+..   .+....++.. .+
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~---~n~GvW~---~~l~~lgl~~~i~~---~w~~~~v~~~-~~  177 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFKDLGLEDCIEH---VWRDTIVYLD-DD  177 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC---Cccccch---hHHHhcCcHHHHHh---hcCCcEEEec-CC
Confidence            5899999999999999999999999999999863322   2233443   45677787554432   2333333322 11


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ...   ..       ...+..++|..|.+.|++++.  ++++ .+++|+.+..+++.+. +++.+|.+++|++||+|||.
T Consensus       178 ~~~---~~-------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~  246 (529)
T PLN02697        178 KPI---MI-------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGA  246 (529)
T ss_pred             cee---ec-------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCc
Confidence            111   01       122336899999999988763  6776 6789999988776654 45677888999999999999


Q ss_pred             chHHHhhhCCC--CCcccceeeEEEeecCCCCCCCCCceeeeec---------------CCcEEEEEecCCCeEEEEEEe
Q 015303          161 NSIVAKWLGFK--NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG---------------KGLRSGFIPCDDQTIYWFFTW  223 (409)
Q Consensus       161 ~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~  223 (409)
                      +|.  +.++..  .+....+.++........+ +++.....+++               ...++|++|.+++++..--++
T Consensus       247 ~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~  323 (529)
T PLN02697        247 ASG--RLLQYEVGGPRVCVQTAYGVEVEVENN-PYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC  323 (529)
T ss_pred             Chh--hhhccccCCCCcccEEEEEEEEEecCC-CCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee
Confidence            993  333322  1222233443333333322 22223233332               124788999999987664444


Q ss_pred             cCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCc
Q 015303          224 TSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDI  303 (409)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~  303 (409)
                      .....    ..+.+.+++.+.+++...+....+++    ..+....|+....|      . ..++++++||||+.++|.|
T Consensus       324 l~~~~----~l~~~~l~~~L~~~l~~~Gi~~~~i~----~~E~g~iPm~g~~~------~-~~~~vl~vG~AAG~vhPsT  388 (529)
T PLN02697        324 LASKD----AMPFDLLKKRLMSRLETMGIRILKTY----EEEWSYIPVGGSLP------N-TEQKNLAFGAAASMVHPAT  388 (529)
T ss_pred             eccCC----CCCHHHHHHHHHHHHHhCCCCcceEE----EEEeeeecCCCCCc------c-cCCCeeEeehhhcCCCCch
Confidence            32221    33456677777777664432211111    12223344432211      2 2678999999999999999


Q ss_pred             ccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303          304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI  364 (409)
Q Consensus       304 g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~  364 (409)
                      |.|+..++.+|..+|+.|.++++..+...   .....+.....++.|++.+..........
T Consensus       389 Gy~v~~~l~~A~~~A~~ia~~l~~~~~~~---~~~~~~~~~~~l~~~~~lw~~e~~r~~~~  446 (529)
T PLN02697        389 GYSVVRSLSEAPKYASVIARILKNVSSGG---KLGTSNSSNISMQAWNTLWPQERKRQRAF  446 (529)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHhhCCcccc---ccccccchHHHHHHHHHhChHHHHHHHHH
Confidence            99999999999999999999998542000   00001356788999988887765544433

>PLN02463 lycopene beta cyclase

Probab=99.97  E-value=1.3e-27  Score=224.52  Aligned_cols=287  Identities=18%  Similarity=0.236  Sum_probs=183.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||||+++|..|++.|++|+|+|+.+.... .++..++   ...++.+|+.+.+...   +....++.....
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~w---~~~l~~lgl~~~l~~~---w~~~~v~~~~~~  100 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGVW---VDEFEALGLLDCLDTT---WPGAVVYIDDGK  100 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccchH---HHHHHHCCcHHHHHhh---CCCcEEEEeCCC
Confidence            58999999999999999999999999999999764221 1122222   3567788887666432   222222211111


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      ..  ..         ...+..++|..|.+.|.+++.  +++++ .++|++++..++.+.|++++|.+++||+||+|||.+
T Consensus       101 ~~--~~---------~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~  168 (447)
T PLN02463        101 KK--DL---------DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS  168 (447)
T ss_pred             Cc--cc---------cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence            10  00         123346899999999988763  57775 579999999888899999999899999999999999


Q ss_pred             hHHHhhhCCCCCcccceeeEEEe-ecCCCCCCCCCceeeee-------c---------C--CcEEEEEecCCCeEEEEEE
Q 015303          162 SIVAKWLGFKNPAFVGRSAIRGY-SDFKGSHGFEPNFLQFF-------G---------K--GLRSGFIPCDDQTIYWFFT  222 (409)
Q Consensus       162 S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~---------~--~~~~~~~p~~~~~~~~~~~  222 (409)
                      |.+++.   ..+...+.....+. ..... +++......++       +         .  -.+++++|.++++++.-.+
T Consensus       169 s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT  244 (447)
T PLN02463        169 RCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET  244 (447)
T ss_pred             cCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence            987643   22222333333333 22222 11122111111       1         0  2378899999998654443


Q ss_pred             ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCC
Q 015303          223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPD  302 (409)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~  302 (409)
                      .....    ...+.+.+++.+.++++..+....++.    ..+....|+....|       ...++++++||||+.++|.
T Consensus       245 ~l~s~----~~~~~~~lk~~L~~~l~~~Gi~~~~i~----~~E~~~IPmg~~~~-------~~~~~~~~~G~aag~v~p~  309 (447)
T PLN02463        245 SLVAR----PGLPMDDIQERMVARLRHLGIKVKSVE----EDEKCVIPMGGPLP-------VIPQRVLGIGGTAGMVHPS  309 (447)
T ss_pred             eeecC----CCCCHHHHHHHHHHHHHHCCCCcceee----eeeeeEeeCCCCCC-------CCCCCEEEecchhcCcCCC
Confidence            21111    123455666777766653332211111    12222334432222       2357899999999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHhhcc
Q 015303          303 IGQGGCAALEDGIVLARCINEALKTK  328 (409)
Q Consensus       303 ~g~G~~~al~~a~~la~~l~~~~~~~  328 (409)
                      +|.|+..++..|..+|+.|.++++.+
T Consensus       310 tG~~i~~~~~~~~~~a~~~~~~~~~~  335 (447)
T PLN02463        310 TGYMVARTLAAAPIVADAIVEYLGSS  335 (447)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999854

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.95  E-value=3e-26  Score=211.92  Aligned_cols=304  Identities=16%  Similarity=0.119  Sum_probs=177.8

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ||+|||||+||+++|..|++.  |++|+|+|+.+..... ...+++.....-...- ..+.+  ....+....+..... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~-   75 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY-   75 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence            899999999999999999987  9999999998643321 2222222111100000 00111  122333333332110 


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .  ..+         ...+..|.+.+|.+.+.+.+... ++++++|+.+  +++++++  .+|.+++||+||+|+|.+|.
T Consensus        76 ~--~~l---------~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        76 R--RKL---------KTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             h--hhc---------CCCceEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCC
Confidence            0  011         13456899999999998877433 8889999988  3445544  78889999999999998874


Q ss_pred             HHhhhCCCCCcccceeeEEEeec-CCCCCCCC-Cceeeee---cC-CcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303          164 VAKWLGFKNPAFVGRSAIRGYSD-FKGSHGFE-PNFLQFF---GK-GLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA  237 (409)
Q Consensus       164 vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~---~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      -..        +.+.+.+.|+.- ...++... ...+-+.   .. ..+++++|.+++++++-.++..+..    ..+.+
T Consensus       140 ~~~--------~~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~----~l~~~  207 (370)
T TIGR01789       140 AHL--------KGGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADDP----LLDRN  207 (370)
T ss_pred             ccc--------cceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCCC----CCCHH
Confidence            111        123344444422 22222211 1122122   22 3466679999999988766655422    44556


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHH
Q 015303          238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVL  317 (409)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~l  317 (409)
                      .+.+.+.+++...+....+++.    .+....|+....+..  ......++++++|||||.++|.+|+|++.++++|..|
T Consensus       208 ~l~~~l~~~~~~~g~~~~~i~~----~e~g~iPm~~~~~~~--~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l  281 (370)
T TIGR01789       208 ALSQRIDQYARANGWQNGTPVR----HEQGVLPVLLGGDFS--AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL  281 (370)
T ss_pred             HHHHHHHHHHHHhCCCceEEEE----eeeeEEeeecCCCcc--cccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence            6666666655432322222111    111233332211000  0001246699999999999999999999999999999


Q ss_pred             HHHHH-HHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303          318 ARCIN-EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI  364 (409)
Q Consensus       318 a~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~  364 (409)
                      ++.+. +   +             .....++..|...|+++.......
T Consensus       282 a~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
T TIGR01789       282 AAQPDLS---S-------------EQLAAFIDSRARRHWSKTGYYRLL  313 (370)
T ss_pred             HhccCcC---c-------------cchhhhhhHHHHHHHHHhHHHHHH
Confidence            99885 2   1             133455678877766666544433

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.95  E-value=1e-25  Score=213.14  Aligned_cols=323  Identities=18%  Similarity=0.147  Sum_probs=192.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhH--HHhcc-ccccceeeee
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS--LRQQH-QQLRSIVATP   79 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~-~~~~~~~~~~   79 (409)
                      ||+|||||+||.++|..|++.+   ++|+|||+...++. +-|....|....+++.+|+.+.  +.+.. ....++.+.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~-~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRI-GVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCC-CccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999998   89999999877654 4577888888889999999866  44332 2233444432


Q ss_pred             cCCCCccccccccc-------------------------------------------cc---ccCCccceeccHHHHHHH
Q 015303           80 TISGKPSSERSLKV-------------------------------------------QG---KYGEHEMRCVRRKLLLET  113 (409)
Q Consensus        80 ~~~~~~~~~~~~~~-------------------------------------------~~---~~~~~~~~~i~r~~l~~~  113 (409)
                      +.........+|..                                           ..   .......+.++|..|++.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence            22110000001100                                           00   011234568999999999


Q ss_pred             HHhhC--CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHHHhh-hCCCCCcccce----eeEEEe
Q 015303          114 LAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFKNPAFVGR----SAIRGY  184 (409)
Q Consensus       114 L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~vr~~-l~~~~~~~~~~----~~~~~~  184 (409)
                      |++.+  .|++++.++ |+++..++++  ..|++.+|.+++||++|+|+|..|.+.+. ++.+.......    .++...
T Consensus       160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~  238 (454)
T PF04820_consen  160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ  238 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred             HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence            99876  578998885 7777766554  46888899999999999999999988666 33332222111    222222


Q ss_pred             ecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCC
Q 015303          185 SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD  264 (409)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (409)
                      .....  ...+.......+.+|+|.+|+.++... .+.+.....      ++++..+.+.+.+......          .
T Consensus       239 ~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~~~~~----------~  299 (454)
T PF04820_consen  239 VPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGGSPEA----------E  299 (454)
T ss_dssp             EE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTCHCTT----------S
T ss_pred             cCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcchhhhc----------c
Confidence            22222  223333344456668999999998765 444444322      3334444555544321110          0


Q ss_pred             ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHH
Q 015303          265 SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVE  344 (409)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~  344 (409)
                      . ...+....     ...+...+++++|||||++++|+.+.|+.+++..+..+++.|....                ..+
T Consensus       300 ~-~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~----------------~~~  357 (454)
T PF04820_consen  300 P-RHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD----------------FSP  357 (454)
T ss_dssp             C-EEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT----------------CCH
T ss_pred             h-hhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC----------------CCH
Confidence            0 11111111     1224456889999999999999999999999998777777776521                226


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303          345 MGLKRYAKERRWRCFELISIAYLVGSI  371 (409)
Q Consensus       345 ~~l~~Y~~~r~~~~~~~~~~s~~~~~~  371 (409)
                      .+++.|++..+...+.+.+.....+.+
T Consensus       358 ~~~~~Yn~~~~~~~~~~~~fi~~hY~~  384 (454)
T PF04820_consen  358 AALDRYNRRMRREYERIRDFISLHYQL  384 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            788999999988888887777666665

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.93  E-value=6.2e-24  Score=197.50  Aligned_cols=277  Identities=21%  Similarity=0.224  Sum_probs=182.0

Q ss_pred             cEEEECCChHHHHHHHHH--HHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            6 DIVIVGAGIAGLTTSLGL--YRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L--~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ||+||||||||+++|+.|  ++.|.+|+|+|+++.. ....+..+++......      .+.+..  ..+....+.....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v~--~~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLVS--HRWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHHh--eecCceEEEeCCC
Confidence            899999999999999999  7889999999998765 1222344443322211      222222  2234444443222


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      ...     ..      .+.+.+|++..|.+.|.+++. +..+..+++|++|+..++.+.+++.+|.+++|++||+|+|..
T Consensus        73 ~~~-----~~------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~  141 (374)
T PF05834_consen   73 SRI-----LI------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS  141 (374)
T ss_pred             ceE-----Ec------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence            111     11      134558999999999999875 456788999999999999899999999999999999999976


Q ss_pred             hHHHhhhCCCCCcccceeeEEEe-ecCCCCCCCCCc---eeeee-c----CCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          162 SIVAKWLGFKNPAFVGRSAIRGY-SDFKGSHGFEPN---FLQFF-G----KGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       162 S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~-~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +...+        ....+.+.|+ +....+ .+...   ++-|. .    .-.+++++|.+++++..-.++..+..    
T Consensus       142 ~~~~~--------~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~----  208 (374)
T PF05834_consen  142 SPKAR--------PLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRP----  208 (374)
T ss_pred             ccccc--------ccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCC----
Confidence            65111        1122233443 333332 12222   22222 1    23588899999999877766665532    


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+.+.+++.+.+++...+....++++    .+....|+....+.     ....++++.+|+|++.++|.||.++..++.
T Consensus       209 ~~~~~~~~~~l~~~l~~~g~~~~~i~~----~E~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~  279 (374)
T PF05834_consen  209 ALPEEELKARLRRYLERLGIDDYEILE----EERGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQR  279 (374)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEEE----eecceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence            355667777777777654443333222    22334555322222     224567999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 015303          313 DGIVLARCINE  323 (409)
Q Consensus       313 ~a~~la~~l~~  323 (409)
                      .|..+|+.|.+
T Consensus       280 ~a~~ia~~l~~  290 (374)
T PF05834_consen  280 QADAIADALAK  290 (374)
T ss_pred             HHHHHHHHHhh
Confidence            99988888876

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.90  E-value=9.3e-22  Score=167.99  Aligned_cols=237  Identities=19%  Similarity=0.138  Sum_probs=180.3

Q ss_pred             ccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      |.++|+|||..|.+|+.+....+  .....+.|..-.....+.+..-++++++...+.+++++.+.....+-+..+..+ 
T Consensus         2 A~LtivaDG~~S~fRk~l~~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P-   78 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP-   78 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC-
Confidence            78999999999999999984433  344556666665555555667788888888999999999988777766655332 


Q ss_pred             ccccChHHHHHHHHHHhC-CCChHHHHHHHc-CCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303          231 ELEDHSAELKQFVLGKLH-DLPAQVKAVIEK-TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC  308 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~  308 (409)
                        ..+.+++++.+++.+. .+++.+++.+.. .+...+...|..+.++.     ....++++++|||+++.||+||+||+
T Consensus        79 --~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGMT  151 (276)
T PF08491_consen   79 --SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGMT  151 (276)
T ss_pred             --CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccchh
Confidence              2345677888887766 677777665443 33344555555554443     34568899999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      .|+.|+..|++.|...   .       +..+.+.+.++++.|+.+|++....+.-++..++.+|...++....+|+..|.
T Consensus       152 VAl~Dv~lL~~lL~~~---~-------dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr~gcf~  221 (276)
T PF08491_consen  152 VALNDVVLLRDLLSPI---P-------DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALRQGCFK  221 (276)
T ss_pred             hHHHHHHHHHHHHhhh---c-------CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999886   1       12235678899999999999999999999999999999999999999999999


Q ss_pred             HHhhh--hhcccccCCCCccc
Q 015303          389 SFLVG--LLLKKADFDCGNLT  407 (409)
Q Consensus       389 ~~~~~--~~~~~~~~~~g~~~  407 (409)
                      ++-..  .......++.|-.|
T Consensus       222 Yf~~GG~~~~gpv~LLsgl~p  242 (276)
T PF08491_consen  222 YFQLGGECVSGPVALLSGLNP  242 (276)
T ss_pred             HHHcCCCCCcchHHHhccCCC
Confidence            86544  33455566666544

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.65  E-value=1.7e-15  Score=134.64  Aligned_cols=157  Identities=22%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-------ccceeccccHHHHHHHcCchhHH----Hhccc
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-------GFAFTVWTNAWKALDAVGIGNSL----RQQHQ   70 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~----~~~~~   70 (409)
                      |+.+||+|||||||||++|..++++|.+|+|||+.+.+.++       .|++.-.....+++.+..-...+    .....
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence            34689999999999999999999999999999999876433       23333333334444444311111    11111


Q ss_pred             cc--------cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE
Q 015303           71 QL--------RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL  140 (409)
Q Consensus        71 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~  140 (409)
                      +.        .++.++....|..   ++            ....-+.+.+.|+.++  .+++++.+++|.++..++....
T Consensus        81 ~~d~i~~~e~~Gi~~~e~~~Gr~---Fp------------~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~  145 (408)
T COG2081          81 PEDFIDWVEGLGIALKEEDLGRM---FP------------DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFR  145 (408)
T ss_pred             HHHHHHHHHhcCCeeEEccCcee---cC------------CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEE
Confidence            11        1233332222221   00            0133466777777765  4799999999999999998999


Q ss_pred             EEecCCcEEeccEEEecCCCchH-----------HHhhhCCCCC
Q 015303          141 LHLADGTILKTKVLIGCDGVNSI-----------VAKWLGFKNP  173 (409)
Q Consensus       141 v~~~~g~~~~ad~vV~AdG~~S~-----------vr~~l~~~~~  173 (409)
                      +.+.+|++++||.+|.|+|..|.           +.+++|.+..
T Consensus       146 l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~  189 (408)
T COG2081         146 LDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTIT  189 (408)
T ss_pred             EEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccc
Confidence            99999989999999999996654           4666665533

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.60  E-value=1.2e-14  Score=127.32  Aligned_cols=135  Identities=22%  Similarity=0.233  Sum_probs=90.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc--ce-----eccccHHHHHHHcCchhHHHhcccccccee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF--AF-----TVWTNAWKALDAVGIGNSLRQQHQQLRSIV   76 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      .+||+||||||||+++|+.|++.|++|+|+|+...+...-+  +.     .+.......|+++|+.         +    
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~---------~----   91 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR---------Y----   91 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC---------c----
Confidence            58999999999999999999999999999999876532111  11     1111222333333321         0    


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEE-EEec--------
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKL-LHLA--------  144 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~-v~~~--------  144 (409)
                       ...                  ....+.+++..+...|.+.+  .+++++++++|+++..+++ ++. +...        
T Consensus        92 -~~~------------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g  152 (257)
T PRK04176         92 -KEV------------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG  152 (257)
T ss_pred             -eee------------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence             000                  01123567888888888765  4789999999999986554 322 2211        


Q ss_pred             ---CCcEEeccEEEecCCCchHHHhhhCC
Q 015303          145 ---DGTILKTKVLIGCDGVNSIVAKWLGF  170 (409)
Q Consensus       145 ---~g~~~~ad~vV~AdG~~S~vr~~l~~  170 (409)
                         +..+++|++||+|+|.+|.+.+.+..
T Consensus       153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~  181 (257)
T PRK04176        153 LHVDPLTIEAKAVVDATGHDAEVVSVLAR  181 (257)
T ss_pred             CCCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence               22479999999999999999887743

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.58  E-value=5.9e-14  Score=122.48  Aligned_cols=133  Identities=22%  Similarity=0.253  Sum_probs=88.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccccee-------ccccHHHHHHHcCchhHHHhcccccccee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT-------VWTNAWKALDAVGIGNSLRQQHQQLRSIV   76 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~-------~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      .+||+||||||+|+++|+.|++.|++|+|+||+..+....++..       +.....++++.+|+.              
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~--------------   86 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR--------------   86 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence            58999999999999999999999999999999977532211110       111112222222211              


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC--eE-EEEec-------
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH--FK-LLHLA-------  144 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~--~v-~v~~~-------  144 (409)
                                    +...    ....+..++..+.+.|.+++  .+++++++++|+++..+++  ++ -|...       
T Consensus        87 --------------~~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~  148 (254)
T TIGR00292        87 --------------YEDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA  148 (254)
T ss_pred             --------------eeec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc
Confidence                          0000    01123456778888887755  3689999999999987766  22 22221       


Q ss_pred             ----CCcEEeccEEEecCCCchHHHhhh
Q 015303          145 ----DGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       145 ----~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                          +..+++|++||+|+|..|.+.+.+
T Consensus       149 g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       149 GLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             CCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence                224789999999999999887776

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.58  E-value=5.4e-13  Score=125.27  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .++...+...+.+.+  .+++++++++|+++..+++.+.|++.++ +++||.||.|+|.++.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence            455566666555443  4789999999999998888888888877 6999999999999864

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.57  E-value=1.5e-12  Score=122.36  Aligned_cols=69  Identities=22%  Similarity=0.261  Sum_probs=54.2

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc-hHHHhhhCCCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN-SIVAKWLGFKNP  173 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~-S~vr~~l~~~~~  173 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+.|.+.++ ++++|.||.|+|.+ +.+++.++...+
T Consensus       141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCC
Confidence            566677777776654  4789999999999998888888887766 69999999999987 567777765544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.54  E-value=1.8e-13  Score=127.54  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=54.3

Q ss_pred             ceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH-HhhhCCC
Q 015303          102 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFK  171 (409)
Q Consensus       102 ~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~  171 (409)
                      ...++...+.+.|.+.+  .|++++.+++|++|..++++|+ |.+.+|+ ++||.||.|+|.++.. .+.++..
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~  213 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLD  213 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTS
T ss_pred             cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccccc
Confidence            34577888888888765  4799999999999999999988 9999998 9999999999998865 3344443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.54  E-value=8.1e-12  Score=110.84  Aligned_cols=304  Identities=15%  Similarity=0.096  Sum_probs=167.8

Q ss_pred             cccEEEECCChHHHHHHHHHHH------cCCceEEEeCCCCcCCcc-cceeccccHHHHHHHcCchhHHHhccccc----
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR------LGIRSMVLESSESLRVTG-FAFTVWTNAWKALDAVGIGNSLRQQHQQL----   72 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~------~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----   72 (409)
                      .+||+|||||||||++|+.|.+      ..++|.|+||...+..+. .|-.+.|.++.   ++ + ....+.+.+.    
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL-~-P~wke~~apl~t~v  150 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL-L-PDWKEDGAPLNTPV  150 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh-C-cchhhcCCcccccc
Confidence            5899999999999999999976      347999999998865332 34445553333   22 1 1122222221    


Q ss_pred             --cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCe-E-EEEe---
Q 015303           73 --RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHF-K-LLHL---  143 (409)
Q Consensus        73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v-~v~~---  143 (409)
                        +.+.+.-   ++.  .++.+......+...++++-..|.++|-+.+.  +++|+-+..+..+-.++++ | -|.+   
T Consensus       151 T~d~~~fLt---~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~  225 (621)
T KOG2415|consen  151 TSDKFKFLT---GKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDV  225 (621)
T ss_pred             cccceeeec---cCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccc
Confidence              1222221   111  12222211112334568888999999987663  5677776666655444322 2 2222   


Q ss_pred             ------------cCCcEEeccEEEecCCCchHHHhhh----CCCCCcccceeeEEEeecC----CCCCCCCCceeee---
Q 015303          144 ------------ADGTILKTKVLIGCDGVNSIVAKWL----GFKNPAFVGRSAIRGYSDF----KGSHGFEPNFLQF---  200 (409)
Q Consensus       144 ------------~~g~~~~ad~vV~AdG~~S~vr~~l----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---  200 (409)
                                  +.|-.+.|+.-|-|.|.+..+.+++    +.+.. ...+.+-.+..+.    +..+. +....+-   
T Consensus       226 GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n-~e~qtYglGlKEvWei~~~~~~-pG~v~HT~Gw  303 (621)
T KOG2415|consen  226 GISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLREN-CEPQTYGLGLKEVWEIDPENHN-PGEVAHTLGW  303 (621)
T ss_pred             cccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccC-CCcceeccccceeEecChhhcC-CcceeeeccC
Confidence                        2334688999999999998887765    33321 2233333333221    11111 1111111   


Q ss_pred             -ecCC--cEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcc
Q 015303          201 -FGKG--LRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQ  277 (409)
Q Consensus       201 -~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (409)
                       +.+.  +-..++.+++..+...+....+-..  -..++   ..++++.  +.+|.+..+++...........+-..- .
T Consensus       304 Pl~~~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP---~~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGG-f  375 (621)
T KOG2415|consen  304 PLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSP---YKEFQKM--KHHPSISKVLEGGKRIAYGARALNEGG-F  375 (621)
T ss_pred             cccCCccCceeEEEcCCCeEEEEEEEEecCCC--CCCCH---HHHHHHh--hcCcchhhhhcCcceeeehhhhhccCC-c
Confidence             1111  1134677788766544443322111  12233   3444443  567778887775422111000000000 0


Q ss_pred             cccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc
Q 015303          278 EVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK  328 (409)
Q Consensus       278 ~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~  328 (409)
                      + ..+....++=+|||=+|++++=---.|-..||.++..+|+.|-+++.+.
T Consensus       376 Q-siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~  425 (621)
T KOG2415|consen  376 Q-SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGL  425 (621)
T ss_pred             c-cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcC
Confidence            0 0112344556799999999999899999999999999999999998753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.54  E-value=1.3e-12  Score=126.38  Aligned_cols=163  Identities=16%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCc---hhHH------Hhcc-
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGI---GNSL------RQQH-   69 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl---~~~~------~~~~-   69 (409)
                      |++.+||+|||||++|+++|+.|+++|++|+|+||++... ..+++..+-..+.++++...+   .+.+      .... 
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p   82 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP   82 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence            5567999999999999999999999999999999986532 122222233233333322110   0000      0000 


Q ss_pred             ---c------ccc-----------ceeeeecCCC-Ccc---cccccc------ccccc----CCccceeccHHHHHHHHH
Q 015303           70 ---Q------QLR-----------SIVATPTISG-KPS---SERSLK------VQGKY----GEHEMRCVRRKLLLETLA  115 (409)
Q Consensus        70 ---~------~~~-----------~~~~~~~~~~-~~~---~~~~~~------~~~~~----~~~~~~~i~r~~l~~~L~  115 (409)
                         .      +..           +..+++.... ..+   ..+.+.      .....    ..+....++...|...+.
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~  162 (508)
T PRK12266         83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA  162 (508)
T ss_pred             CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence               0      000           0000000000 000   000000      00000    011112355566655555


Q ss_pred             hhC--CCceEEeCCeEEEEEEeCCeEEEEecC---Cc--EEeccEEEecCCCchH
Q 015303          116 KEL--PSGTIRYSSQVVSIEESGHFKLLHLAD---GT--ILKTKVLIGCDGVNSI  163 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~--~~~ad~vV~AdG~~S~  163 (409)
                      ..+  .+++++.+++|+++..+++.+.+++.+   |+  +++|+.||.|+|.|+.
T Consensus       163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            433  478999999999998887777777654   43  6899999999999985

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.53  E-value=2.6e-13  Score=111.18  Aligned_cols=129  Identities=25%  Similarity=0.226  Sum_probs=81.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc-c------eeccccHHHHHHHcCchhHHHhcccccccee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF-A------FTVWTNAWKALDAVGIGNSLRQQHQQLRSIV   76 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~-~------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      ++||+||||||+||++|+.|++.|++|+|+|++..+...-+ |      +.+...+..+|+++|+.              
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~--------------   82 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP--------------   82 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT----------------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce--------------
Confidence            58999999999999999999999999999999987643221 1      23344455666666541              


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC-CeEEEEec---------
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFKLLHLA---------  144 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~v~~~---------  144 (409)
                      +...                  ....+..+...+...|..++  ++++|+..+.|.++...+ +++.-..-         
T Consensus        83 y~~~------------------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g  144 (230)
T PF01946_consen   83 YEEY------------------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG  144 (230)
T ss_dssp             -EE-------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-
T ss_pred             eEEe------------------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh
Confidence            1100                  11233456667777776654  689999999999987766 55432221         


Q ss_pred             ---CCcEEeccEEEecCCCchHH
Q 015303          145 ---DGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       145 ---~g~~~~ad~vV~AdG~~S~v  164 (409)
                         |..++++++||+|||..+.+
T Consensus       145 lHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen  145 LHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             -T-B-EEEEESEEEE---SSSSS
T ss_pred             cCCCcceEEEeEEEeCCCCchHH
Confidence               23479999999999998765

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.52  E-value=3.8e-12  Score=123.34  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=92.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCch---hH------HHhcc-
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIG---NS------LRQQH-   69 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~~------~~~~~-   69 (409)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||++... ..+++..+-..+.++++..++.   +.      +.... 
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap   82 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP   82 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence            4456999999999999999999999999999999996542 1222222222233333332110   00      00000 


Q ss_pred             ccccceeee-ecCCCC-----------------------ccccccccc------cc----ccCCccceeccHHHHHHHHH
Q 015303           70 QQLRSIVAT-PTISGK-----------------------PSSERSLKV------QG----KYGEHEMRCVRRKLLLETLA  115 (409)
Q Consensus        70 ~~~~~~~~~-~~~~~~-----------------------~~~~~~~~~------~~----~~~~~~~~~i~r~~l~~~L~  115 (409)
                      .......+. ......                       ....++...      ..    ....+....++...+...+.
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~  162 (502)
T PRK13369         83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA  162 (502)
T ss_pred             ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence            000000000 000000                       000000000      00    00011122456677766665


Q ss_pred             hhC--CCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEEEecCCCchH
Q 015303          116 KEL--PSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSI  163 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~vV~AdG~~S~  163 (409)
                      ..+  .+++++.+++|+++..+++.+.|++.++    .+++|++||.|+|.|+.
T Consensus       163 ~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        163 LDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            544  4789999999999998887777777664    26899999999999985

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.51  E-value=3.4e-12  Score=121.12  Aligned_cols=67  Identities=25%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             ccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-----cEEeccEEEecCCCchH-HHhhhCCC
Q 015303          105 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLIGCDGVNSI-VAKWLGFK  171 (409)
Q Consensus       105 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~ad~vV~AdG~~S~-vr~~l~~~  171 (409)
                      ++-..+...|.+.+  .+++++++++|++++.+++.+++.+.++     .+++||.||.|+|.+|. +.+.++..
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~  268 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR  268 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence            34456666665554  3789999999999998888777655443     36899999999999975 34444543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.50  E-value=9.9e-13  Score=106.96  Aligned_cols=132  Identities=22%  Similarity=0.268  Sum_probs=89.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc--ce-----eccccHHHHHHHcCchhHHHhccccccceee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF--AF-----TVWTNAWKALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      .||+||||||+||++|+.|+++|++|+|+||+-.+.-..+  |.     .+...+.++|+.+|+.              +
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~--------------y   96 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIR--------------Y   96 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCc--------------c
Confidence            5999999999999999999999999999999876532211  11     1223344555555442              1


Q ss_pred             eecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEEEEe-----------
Q 015303           78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHL-----------  143 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~-----------  143 (409)
                      ...                  ....+..+...+...|+.++  .+++|+.++.|.++...++ ++.-..           
T Consensus        97 e~~------------------e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l  158 (262)
T COG1635          97 EEE------------------EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL  158 (262)
T ss_pred             eec------------------CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence            100                  11233455566777776654  3689999999999876665 332211           


Q ss_pred             -cCCcEEeccEEEecCCCchHHHhhh
Q 015303          144 -ADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       144 -~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                       -|..++++++||+|||....+-+.+
T Consensus       159 hvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         159 HVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             ccCcceeeEEEEEeCCCCchHHHHHH
Confidence             1344789999999999987775554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.49  E-value=3.1e-12  Score=128.17  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             eccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .++...+.+.|.+.+. +++++++++|++++..++.+.|.+.++..++||.||.|+|.++.
T Consensus       404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            4677888888887764 58999999999999888889898888877889999999999985

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.49  E-value=1.7e-13  Score=127.35  Aligned_cols=138  Identities=21%  Similarity=0.269  Sum_probs=73.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----c---cceec---------------cccHHHHHHHcCch
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----G---FAFTV---------------WTNAWKALDAVGIG   62 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~---~~~~~---------------~~~~~~~l~~~gl~   62 (409)
                      |||+|||||||||+||+.|++.|.+|+|+||++.+..+    |   |.+.-               ..-....|++++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            79999999999999999999999999999999865221    1   11111               00112333333221


Q ss_pred             h---HHHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC
Q 015303           63 N---SLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH  137 (409)
Q Consensus        63 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~  137 (409)
                      +   -+.+.+     +.......+..     ++          ..-.-..+.+.|.+++  .+++++++++|++|+.+++
T Consensus        81 d~~~ff~~~G-----v~~~~~~~gr~-----fP----------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~  140 (409)
T PF03486_consen   81 DLIAFFEELG-----VPTKIEEDGRV-----FP----------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED  140 (409)
T ss_dssp             HHHHHHHHTT-------EEE-STTEE-----EE----------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT
T ss_pred             HHHHHHHhcC-----CeEEEcCCCEE-----CC----------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC
Confidence            1   111111     11111111111     00          0112355566665554  2799999999999998887


Q ss_pred             e-EEEEecCCcEEeccEEEecCCCch
Q 015303          138 F-KLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       138 ~-v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      . +.|.++++.++.||.||.|+|..|
T Consensus       141 ~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  141 GVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             EEEEEEETTTEEEEESEEEE----SS
T ss_pred             ceeEeeccCcccccCCEEEEecCCCC
Confidence            7 888887777899999999999766

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.44  E-value=5.1e-11  Score=113.44  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH-HhhhCCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFKN  172 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~  172 (409)
                      .++...+.+.|.+.+  .+++|+++++|++++.+++.+. +++.++ +++||.||.|+|.++.- .+.++...
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~  268 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDI  268 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCc
Confidence            345567777776554  4789999999999988777754 555544 69999999999999853 33344443

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.43  E-value=1.6e-11  Score=113.10  Aligned_cols=165  Identities=19%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcc---------cceeccccHH-------------HHHHH
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTG---------FAFTVWTNAW-------------KALDA   58 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~---------~~~~~~~~~~-------------~~l~~   58 (409)
                      +++||+|||||+.|+++|+.|++.+  ++|+|+||...+....         .|+...|.+.             ++-++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998  9999999987652211         1222333211             11111


Q ss_pred             cCc-----------------------hhHHHhccccccceeeeecCCCCcccc-ccccc---ccccCCccceeccHHHHH
Q 015303           59 VGI-----------------------GNSLRQQHQQLRSIVATPTISGKPSSE-RSLKV---QGKYGEHEMRCVRRKLLL  111 (409)
Q Consensus        59 ~gl-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~r~~l~  111 (409)
                      +++                       ++...+.+..  .....   +...+.. .+.-.   .+-...+....++-..+.
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~--~~~~l---d~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t  156 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVF--DLEIL---DKEEIKELEPLLNEGAVAALLVPSGGIVDPGELT  156 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCc--ceeec---CHHHHHhhCccccccceeeEEcCCCceEcHHHHH
Confidence            110                       0111111111  01110   0000000 00000   000112233356666777


Q ss_pred             HHHHhhC--CCceEEeCCeEEEEEEeCC-eEEEEecCCcE-EeccEEEecCCCchH-HHhhhCCCC
Q 015303          112 ETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHLADGTI-LKTKVLIGCDGVNSI-VAKWLGFKN  172 (409)
Q Consensus       112 ~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~-~~ad~vV~AdG~~S~-vr~~l~~~~  172 (409)
                      ..|.+.+  .+++++++++|++|++.++ ...+.+.+|++ ++|++||.|.|..|- +.+..+.+.
T Consensus       157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         157 RALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            6666654  4789999999999999888 57778888876 999999999999875 456666665

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.43  E-value=7.6e-11  Score=111.80  Aligned_cols=69  Identities=19%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe-CCe-EEEEecCCcEEeccEEEecCCCc-hHHHhhhCCCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES-GHF-KLLHLADGTILKTKVLIGCDGVN-SIVAKWLGFKNP  173 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vV~AdG~~-S~vr~~l~~~~~  173 (409)
                      .++...+...|++.+  .+++++++++|++++.. ++. +.|++.+| ++.++.||.|.|.+ +.+++.++...+
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~  252 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP  252 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC
Confidence            345556666565544  47899999999999754 344 45777777 58998766655555 567777766544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.43  E-value=2e-12  Score=124.05  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=88.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccc----cHHHHHHHcC-chhHH-Hhcccccc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWT----NAWKALDAVG-IGNSL-RQQHQQLR   73 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~----~~~~~l~~~g-l~~~~-~~~~~~~~   73 (409)
                      |+.+|||+||||||||+.+|+.+++.|.+|+|+|++. .+...+|.-.+..    ...+.++.+| +.... ...+..  
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq--   78 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ--   78 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc--
Confidence            5667999999999999999999999999999999874 2222223221211    1122333343 11111 111111  


Q ss_pred             ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEecCCcEE
Q 015303           74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTIL  149 (409)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~  149 (409)
                       ........+..   .         ......+++..+...+.+.+   ++++++ ..+|+++..+++.+ .|.+.+|..+
T Consensus        79 -~r~ln~skGpA---V---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I  144 (618)
T PRK05192         79 -FRMLNTSKGPA---V---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEF  144 (618)
T ss_pred             -eeecccCCCCc---e---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEE
Confidence             11111001100   0         00112477777777776544   467774 56788887766664 4778888899


Q ss_pred             eccEEEecCCCch
Q 015303          150 KTKVLIGCDGVNS  162 (409)
Q Consensus       150 ~ad~vV~AdG~~S  162 (409)
                      .|+.||+|+|.++
T Consensus       145 ~Ak~VIlATGTFL  157 (618)
T PRK05192        145 RAKAVVLTTGTFL  157 (618)
T ss_pred             ECCEEEEeeCcch
Confidence            9999999999765

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.42  E-value=2.6e-11  Score=114.31  Aligned_cols=68  Identities=25%  Similarity=0.442  Sum_probs=55.2

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCCC
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGFK  171 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~  171 (409)
                      ..++...+.+.|.+.+  .+++++++++|++++.+++.+.|.+.++ +++||.||.|+|.+|. +.+.++..
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence            3567788888887665  3789999999999988888888888776 6999999999999984 56666654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.39  E-value=1.8e-12  Score=110.65  Aligned_cols=136  Identities=20%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             EEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCcc
Q 015303            8 VIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPS   86 (409)
Q Consensus         8 ~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~   86 (409)
                      +||||||+|+++|..|.+.|++ |+|+|+++.+...-.   -.+..          ..+...........+.      ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~---~~~~~----------~~~~~~~~~~~~~~~~------~~   61 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR---RYYSY----------TRLHSPSFFSSDFGLP------DF   61 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH---CH-TT----------TT-BSSSCCTGGSS--------CC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE---EeCCC----------CccccCccccccccCC------cc
Confidence            7999999999999999999999 999999876322110   00000          0000000000000000      00


Q ss_pred             cccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           87 SERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..+.+...+. .........+..+.++|.+.+  -+.+++++++|++++.++++|.|++.++.+++||.||.|+|..|.
T Consensus        62 ~~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   62 ESFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             CHSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             cccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            0011110000 000111255666666665543  256799999999999999999999999988999999999997553

...

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.39  E-value=2.6e-12  Score=122.18  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHh-ccccccceeeeec
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ-QHQQLRSIVATPT   80 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~~   80 (409)
                      ++..+|+||||||+||++|..|++.|++|+|+|+++..   |..+.+.+....  +.+++...... ....+.....   
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v---GG~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~t---   79 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV---GGLWVYTPKSES--DPLSLDPTRSIVHSSVYESLRT---   79 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC---cceeecCCCcCC--CccccCCCCcccchhhhhhhhc---
Confidence            34689999999999999999999999999999998763   222222221100  00111100000 0000000000   


Q ss_pred             CCCCccccccccccccc------CCccceeccHHHHHHHHHhhCC--Cce--EEeCCeEEEEEEeCCeEEEEecCCc---
Q 015303           81 ISGKPSSERSLKVQGKY------GEHEMRCVRRKLLLETLAKELP--SGT--IRYSSQVVSIEESGHFKLLHLADGT---  147 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~------~~~~~~~i~r~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~~~v~v~~~~g~---  147 (409)
                        +.+...+.+...+..      .........+..+.++|.+.+.  ++.  |+++++|++++..++.|.|++.++.   
T Consensus        80 --n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~  157 (461)
T PLN02172         80 --NLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFS  157 (461)
T ss_pred             --cCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCce
Confidence              000001111110000      0001113456778888877653  444  8999999999988888999886432   


Q ss_pred             -EEeccEEEecCCCch
Q 015303          148 -ILKTKVLIGCDGVNS  162 (409)
Q Consensus       148 -~~~ad~vV~AdG~~S  162 (409)
                       +..+|.||.|+|..+
T Consensus       158 ~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        158 KDEIFDAVVVCNGHYT  173 (461)
T ss_pred             EEEEcCEEEEeccCCC
Confidence             457999999999754

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.36  E-value=2.5e-11  Score=116.52  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..++..++...|++.+  .+++|+.+++|++++. ++.+.|++.+| +++||.||.|+|.++.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            3567788888887655  4799999999999975 45577777777 5999999999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.35  E-value=1.7e-09  Score=104.54  Aligned_cols=50  Identities=16%  Similarity=0.243  Sum_probs=40.2

Q ss_pred             HHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303          113 TLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       113 ~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      .|.+.+.+++|+++++|+.|+.++++|+|++.+|++++||.||.|.-...
T Consensus       230 ~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~  279 (462)
T TIGR00562       230 EIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA  279 (462)
T ss_pred             HHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence            33333433579999999999998888999988888899999999988653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.34  E-value=6.2e-11  Score=99.68  Aligned_cols=141  Identities=23%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC-------cc-----cceeccccHHHHHHHcCchhHHHhccc--c
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV-------TG-----FAFTVWTNAWKALDAVGIGNSLRQQHQ--Q   71 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~-------~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~--~   71 (409)
                      +|+|||+||+|+++|+.|+..|++|+|+||......       .+     .+..+.++...+++.+   +.+.+.+.  .
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~glV~~   79 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGLVDV   79 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCceee
Confidence            799999999999999999999999999999864311       11     1222333333333332   11222221  0


Q ss_pred             c-cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EE
Q 015303           72 L-RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-IL  149 (409)
Q Consensus        72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~  149 (409)
                      + ..+..+. ..+       ....+...+ ....-..+.|.+.|+.   +.+|.++++|+.+...++.|++++++|. ..
T Consensus        80 W~~~~~~~~-~~~-------~~~~~d~~p-yvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~  147 (331)
T COG3380          80 WTPAVWTFT-GDG-------SPPRGDEDP-YVGEPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDGTRHT  147 (331)
T ss_pred             ccccccccc-cCC-------CCCCCCCCc-cccCcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence            1 0110000 000       000010001 0001223455555544   6789999999999999999999997764 67


Q ss_pred             eccEEEecCCCc
Q 015303          150 KTKVLIGCDGVN  161 (409)
Q Consensus       150 ~ad~vV~AdG~~  161 (409)
                      .+|.||.|--+.
T Consensus       148 ~~d~vvla~PAP  159 (331)
T COG3380         148 QFDDVVLAIPAP  159 (331)
T ss_pred             ccceEEEecCCC
Confidence            899888875543

>PRK07233 hypothetical protein; Provisional

Probab=99.32  E-value=9.4e-10  Score=105.45  Aligned_cols=59  Identities=22%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             HHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303          109 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       109 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      .+.+.|.+.+  .+++|+++++|++|+.+++++.+...++.++++|.||.|...+. +.+.+
T Consensus       199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~-~~~ll  259 (434)
T PRK07233        199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI-LARLV  259 (434)
T ss_pred             HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH-HHhhc
Confidence            3455555544  26789999999999988887766667777899999999998753 33443

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.32  E-value=1.5e-11  Score=114.82  Aligned_cols=140  Identities=18%  Similarity=0.200  Sum_probs=90.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++..+|+|||||||||++|..|.+.|++|+++||.+.+   |.-+.+.+..-.      .      .....+.....   
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i---GGlW~y~~~~~~------~------~ss~Y~~l~tn---   65 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI---GGLWKYTENVEV------V------HSSVYKSLRTN---   65 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc---cceEeecCcccc------c------ccchhhhhhcc---
Confidence            34679999999999999999999999999999999773   222222221110      0      00001111110   


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCC----ceEEeCCeEEEEEEeC-CeEEEEecCCc----EEecc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS----GTIRYSSQVVSIEESG-HFKLLHLADGT----ILKTK  152 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ad  152 (409)
                        .+.....+.+.+.......+..++..+.++|.+.+..    ..|.++++|..++... +.|.|.+.+..    ..-+|
T Consensus        66 --~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd  143 (448)
T KOG1399|consen   66 --LPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFD  143 (448)
T ss_pred             --CChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEee
Confidence              0001111222211112233356777999999887753    4699999999999888 78999987653    56799


Q ss_pred             EEEecCCCc
Q 015303          153 VLIGCDGVN  161 (409)
Q Consensus       153 ~vV~AdG~~  161 (409)
                      .||.|+|.+
T Consensus       144 ~VvVctGh~  152 (448)
T KOG1399|consen  144 AVVVCTGHY  152 (448)
T ss_pred             EEEEcccCc
Confidence            999999987

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.32  E-value=7.1e-10  Score=106.81  Aligned_cols=56  Identities=27%  Similarity=0.379  Sum_probs=43.3

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                      .+.+.|.+.+...+|+++++|++|+.+++++.|++.+|+++.||.||.|.-.....
T Consensus       222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~  277 (451)
T PRK11883        222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP  277 (451)
T ss_pred             HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence            34444444443337999999999999888899999999899999999998865433

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.32  E-value=4.4e-10  Score=105.97  Aligned_cols=61  Identities=20%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             eccHHHHHHHHHhhC--CC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303          104 CVRRKLLLETLAKEL--PS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr  165 (409)
                      .++...+...|.+.+  .+ ..+..++.+..++.....+.|.+.+|. +.+|.||.|+|.++...
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l  215 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGEL  215 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence            456667777777655  24 456669999998875355788888887 99999999999997653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.29  E-value=3.6e-10  Score=106.45  Aligned_cols=209  Identities=14%  Similarity=0.166  Sum_probs=120.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCch---hHHHhccc--------
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIG---NSLRQQHQ--------   70 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~--------   70 (409)
                      +.+||+|||||+.|+-+|.-++.+|++|+|+|+++... ..++...+-..+++++++..+.   +.+.+...        
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            56999999999999999999999999999999998763 4456666767778888776432   22222110        


Q ss_pred             --cccceeee-----------------ecCCCC-----cccccccc-------cccc-----cCCccceeccHHHHHHHH
Q 015303           71 --QLRSIVAT-----------------PTISGK-----PSSERSLK-------VQGK-----YGEHEMRCVRRKLLLETL  114 (409)
Q Consensus        71 --~~~~~~~~-----------------~~~~~~-----~~~~~~~~-------~~~~-----~~~~~~~~i~r~~l~~~L  114 (409)
                        +.......                 +...+.     ....+...       ....     ...+....++-..|.-..
T Consensus        91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~  170 (532)
T COG0578          91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN  170 (532)
T ss_pred             cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence              00000000                 000110     00000000       0000     112233345555555444


Q ss_pred             HhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCc-----EEeccEEEecCCCchHH-HhhhCCCCCc------ccceee
Q 015303          115 AKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGT-----ILKTKVLIGCDGVNSIV-AKWLGFKNPA------FVGRSA  180 (409)
Q Consensus       115 ~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-----~~~ad~vV~AdG~~S~v-r~~l~~~~~~------~~~~~~  180 (409)
                      +..+  .|.++...++|+++..+++.+.|...|..     +++|+.||.|+|+|+-- ++..+.....      ..+.+.
T Consensus       171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHl  250 (532)
T COG0578         171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHL  250 (532)
T ss_pred             HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEE
Confidence            4333  57899999999999999886566665432     68999999999999864 5555333221      123232


Q ss_pred             EEEeecCCCCCCCCCceeeee-cCCcEEEEEecCCCe
Q 015303          181 IRGYSDFKGSHGFEPNFLQFF-GKGLRSGFIPCDDQT  216 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~  216 (409)
                      +..     .-.+....+.... .++....++|..+..
T Consensus       251 Vv~-----~~~~~~~a~~~~~~~d~r~~f~iP~~~~~  282 (532)
T COG0578         251 VVD-----KKFPINQAVINRCRKDGRIVFAIPYEGKT  282 (532)
T ss_pred             Eec-----ccCCCCceEEeecCCCCceEEEecCCCCE
Confidence            221     1111122222222 267778888888874

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.28  E-value=6e-10  Score=110.18  Aligned_cols=66  Identities=18%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe--CCeE-EEEe---cCCc--EEeccEEEecCCCchH-HHhhhC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES--GHFK-LLHL---ADGT--ILKTKVLIGCDGVNSI-VAKWLG  169 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~--~~~v-~v~~---~~g~--~~~ad~vV~AdG~~S~-vr~~l~  169 (409)
                      .++...+...|++.+  .+++++.+++|+++..+  ++.+ .|+.   .+++  ++++|.||.|+|+||. +++.++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            467778887777655  47899999999999876  3433 3343   2333  6899999999999986 566654

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.28  E-value=1.1e-10  Score=111.17  Aligned_cols=70  Identities=21%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             eeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEe-CCeEEEEe---cCCc--EEeccEEEecCCCchH-HHhhhCCCC
Q 015303          103 RCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GHFKLLHL---ADGT--ILKTKVLIGCDGVNSI-VAKWLGFKN  172 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~v~v~~---~~g~--~~~ad~vV~AdG~~S~-vr~~l~~~~  172 (409)
                      ..++...+.+.|.+.+   .+++++++++|++++.. ++.|+++.   .+++  +++||+||.|.|.+|. +.+.+|...
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~  258 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE  258 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence            3577888888887654   36899999999999887 66787763   3442  6899999999999985 566667653

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.28  E-value=2.2e-10  Score=109.95  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             eeccHHHHHHHHHhhCC--C-ceEEeCCeEEEEEEeCCe-EEEEec---CCc--EEeccEEEecCCCchH-HHhhhCCCC
Q 015303          103 RCVRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHF-KLLHLA---DGT--ILKTKVLIGCDGVNSI-VAKWLGFKN  172 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~~--~-~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~l~~~~  172 (409)
                      ..++...+.+.|.+.+.  + ++++++++|++++.++++ |.+++.   +|+  +++|++||.|+|.+|. +++.+|...
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~  257 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE  257 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence            35777788888877652  4 799999999999886554 766653   353  6899999989888764 566777663

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.28  E-value=2.6e-09  Score=103.10  Aligned_cols=59  Identities=10%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      .|.+.|.+.+++++|+++++|+.|+.+++++.|++.+++++.||.||.|.- ...+.+.+
T Consensus       227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll  285 (463)
T PRK12416        227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP-HDIAETLL  285 (463)
T ss_pred             HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence            455556665544679999999999999888999888888899999999885 33344444

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.27  E-value=6.7e-11  Score=107.79  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEE-eCCCCcCCcccceeccccH----HHHHHHcC-chhHHHhccccccceeeee
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVL-ESSESLRVTGFAFTVWTNA----WKALDAVG-IGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~----~~~l~~~g-l~~~~~~~~~~~~~~~~~~   79 (409)
                      ||+|||||.||+.||+.+++.|.+|+|+ ++.+.....+|.-.+...+    .+.++.+| +.-..    .....+++..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~----aD~~~i~~~~   76 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA----ADETGIHFRM   76 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH----HHHHEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH----HhHhhhhhhc
Confidence            8999999999999999999999999999 4444444455554444332    23344444 11111    1111222222


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEE
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLI  155 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV  155 (409)
                      ....+-          .........++|..+.+.+.+.+   ++++|+ ..+|+++..+++. +.|.+.+|+.+.+|.||
T Consensus        77 lN~skG----------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vV  145 (392)
T PF01134_consen   77 LNRSKG----------PAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVV  145 (392)
T ss_dssp             ESTTS-----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEE
T ss_pred             ccccCC----------CCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEE
Confidence            111110          00011223688988888887654   568886 5689999887766 56788899999999999


Q ss_pred             ecCCC
Q 015303          156 GCDGV  160 (409)
Q Consensus       156 ~AdG~  160 (409)
                      +|+|.
T Consensus       146 laTGt  150 (392)
T PF01134_consen  146 LATGT  150 (392)
T ss_dssp             E-TTT
T ss_pred             Eeccc
Confidence            99998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.24  E-value=3.5e-10  Score=98.17  Aligned_cols=172  Identities=18%  Similarity=0.127  Sum_probs=97.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceecccc-------------HHHHHHHcCchhHHHh
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTN-------------AWKALDAVGIGNSLRQ   67 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~-------------~~~~l~~~gl~~~~~~   67 (409)
                      |.+.+||+|||||+-|+++|+.|+|+|.++.++|+.+.+...|.+...+.-             ..+.++.+--.+.+..
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g   83 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG   83 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence            456789999999999999999999999999999999887655544332221             1122222200011100


Q ss_pred             ccccccceeeeecCCC-------------------------Ccccccc----cccccc-cCCccceeccHHHHHHHHHhh
Q 015303           68 QHQQLRSIVATPTISG-------------------------KPSSERS----LKVQGK-YGEHEMRCVRRKLLLETLAKE  117 (409)
Q Consensus        68 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~----~~~~~~-~~~~~~~~i~r~~l~~~L~~~  117 (409)
                      ... ..+.........                         +....++    ++..-. .......++...+-...|.+.
T Consensus        84 ~~~-~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~  162 (399)
T KOG2820|consen   84 VKL-HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK  162 (399)
T ss_pred             eee-cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence            000 000000000000                         0000011    100000 012223345555555666555


Q ss_pred             CC--CceEEeCCeEEEEEE---eCCeEEEEecCCcEEeccEEEecCCCch--HHHhhhCCCCC
Q 015303          118 LP--SGTIRYSSQVVSIEE---SGHFKLLHLADGTILKTKVLIGCDGVNS--IVAKWLGFKNP  173 (409)
Q Consensus       118 ~~--~~~i~~~~~v~~i~~---~~~~v~v~~~~g~~~~ad~vV~AdG~~S--~vr~~l~~~~~  173 (409)
                      +.  |+.++.+.+|+.+..   ++..+.|.+.+|..+.++-+|.+.|+|-  .++..++...|
T Consensus       163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~P  225 (399)
T KOG2820|consen  163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFP  225 (399)
T ss_pred             HHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCc
Confidence            53  688999999988763   3456899999999999999999999973  23333444444

>PLN02568 polyamine oxidase

Probab=99.24  E-value=1.5e-09  Score=105.28  Aligned_cols=53  Identities=32%  Similarity=0.423  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303          108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..|.+.|.+.+++..|+++++|+.|+..+++++|++.+|++++||.||.|.-.
T Consensus       242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            55788888888767899999999999999999999999988999999998774

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.24  E-value=1.5e-10  Score=110.55  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             eeccHHHHHHHHHhhCC------C--ceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCC
Q 015303          103 RCVRRKLLLETLAKELP------S--GTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGF  170 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~~------~--~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~  170 (409)
                      ..++...+...|.+.+.      +  ++++++++|++|+.+ ++.+.|++.+| +++||.||.|.|.+|. +.+.+|.
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence            35677777777766542      3  678999999999987 45678888777 5999999999999985 5666665

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.23  E-value=2.3e-10  Score=108.52  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +.++||+|||||++|+++|+.|.+.|.+ ++|+||++.+...                   |...     .++++.....
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~-------------------W~~~-----ry~~l~~~~p   61 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-------------------WRYN-----RYPGLRLDSP   61 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc-------------------chhc-----cCCceEECCc
Confidence            4568999999999999999999999998 9999999764321                   0000     0111111100


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcE--EeccEEEe
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTI--LKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~--~~ad~vV~  156 (409)
                      ..-......++.   ....+....-.+..+..++.+......+.+++.|+....++  +.|+|+++++.+  ++||.||.
T Consensus        62 ~~~~~~~~~p~~---~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~  138 (443)
T COG2072          62 KWLLGFPFLPFR---WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV  138 (443)
T ss_pred             hheeccCCCccC---CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence            000000011111   00011111124566666666554445777777777665554  579999998875  45999999


Q ss_pred             cCCCch
Q 015303          157 CDGVNS  162 (409)
Q Consensus       157 AdG~~S  162 (409)
                      |+|..|
T Consensus       139 ATG~~~  144 (443)
T COG2072         139 ATGHLS  144 (443)
T ss_pred             eecCCC
Confidence            999854

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.22  E-value=5e-12  Score=119.88  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccccee---ccc-cHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT---VWT-NAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~---~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      |||||||||+|+++|+.+++.|.+|+|+|+...+........   +.. .... ...-|+..++.+.......... ...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~-~~~   78 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQ-EDR   78 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccc-ccc
Confidence            899999999999999999999999999999987643222111   111 1111 1111334444333221111100 000


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEec--CC-cEEeccEEEec
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLA--DG-TILKTKVLIGC  157 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~--~g-~~~~ad~vV~A  157 (409)
                      .+.. ....+.          ...-+..|.+++.+  .++++++++.|+++..++++ +.|++.  +| .+++|+++|+|
T Consensus        79 ~~~~-~~~~~~----------~~~~~~~l~~~l~e--~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDa  145 (428)
T PF12831_consen   79 YGWV-SNVPFD----------PEVFKAVLDEMLAE--AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDA  145 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-cccccc----------cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000 000000          01222334444422  37999999999999988755 233333  33 47999999999


Q ss_pred             CCCchHHHhhhCCC
Q 015303          158 DGVNSIVAKWLGFK  171 (409)
Q Consensus       158 dG~~S~vr~~l~~~  171 (409)
                      +|- ..+....|.+
T Consensus       146 TG~-g~l~~~aG~~  158 (428)
T PF12831_consen  146 TGD-GDLAALAGAP  158 (428)
T ss_dssp             --------------
T ss_pred             ccc-cccccccccc
Confidence            994 5555444443

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.22  E-value=4.3e-10  Score=107.84  Aligned_cols=71  Identities=18%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             ceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC-CeEEEEec---CC--cEEeccEEEecCCCchH-HHhhhCCCC
Q 015303          102 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFKLLHLA---DG--TILKTKVLIGCDGVNSI-VAKWLGFKN  172 (409)
Q Consensus       102 ~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~v~~~---~g--~~~~ad~vV~AdG~~S~-vr~~l~~~~  172 (409)
                      ...++...+...|.+.+  .+++++++++|++++.++ +.|.+++.   ++  .+++||+||.|.|.+|. +++.+|...
T Consensus       172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~  251 (483)
T TIGR01320       172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE  251 (483)
T ss_pred             CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence            34678888888887765  378999999999998865 45666543   33  26899999999998764 577777663

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR00275 flavoprotein, HI0933 family

Probab=99.19  E-value=4.9e-11  Score=112.13  Aligned_cols=156  Identities=21%  Similarity=0.177  Sum_probs=85.7

Q ss_pred             EEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----ccce-eccc--cHHHHHHHcCchhH-HHhccc---ccccee
Q 015303            8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----GFAF-TVWT--NAWKALDAVGIGNS-LRQQHQ---QLRSIV   76 (409)
Q Consensus         8 ~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~-~~~~--~~~~~l~~~gl~~~-~~~~~~---~~~~~~   76 (409)
                      +|||||++|+++|+.|+++|.+|+|+||.+.+..+    +.+- .++.  ....+++..+-... +.....   ....+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            69999999999999999999999999998765321    1111 0111  01112122211000 000000   000000


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL  154 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  154 (409)
                      ++. ..+-.   +.....+.  .+. ..-....+.+.|.+.+  .+++++++++|+++..+++.+.+++ ++.++.+|.|
T Consensus        81 ~~~-~~Gv~---~~~~~~g~--~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~V  152 (400)
T TIGR00275        81 FFE-SLGLE---LKVEEDGR--VFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKV  152 (400)
T ss_pred             HHH-HcCCe---eEEecCCE--eEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEE
Confidence            110 00100   00000000  000 0112345555555544  3789999999999988777777777 4567999999


Q ss_pred             EecCCCch-----------HHHhhhCCC
Q 015303          155 IGCDGVNS-----------IVAKWLGFK  171 (409)
Q Consensus       155 V~AdG~~S-----------~vr~~l~~~  171 (409)
                      |.|+|.+|           .+.+.+|..
T Consensus       153 IlAtG~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       153 ILATGGLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             EECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence            99999977           456666665

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02612 phytoene desaturase

Probab=99.19  E-value=7.4e-09  Score=101.61  Aligned_cols=61  Identities=30%  Similarity=0.448  Sum_probs=46.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc------------c----eeccccHHHHHHHcCchhH
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF------------A----FTVWTNAWKALDAVGIGNS   64 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~------------~----~~~~~~~~~~l~~~gl~~~   64 (409)
                      ..+|+|||||++|+++|+.|+++|++|+|+|+++.+....+            |    ....++..++++++|+.+.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            47899999999999999999999999999999765321110            1    1123567788888887543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.17  E-value=2.2e-10  Score=111.93  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEec---CC--cEEeccEEEecCCCchH-HHhhhCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DG--TILKTKVLIGCDGVNSI-VAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~~~ad~vV~AdG~~S~-vr~~l~~~  171 (409)
                      .++...|...+...+  .+++++++++|+++..+++++. |++.   ++  .+++||.||.|+|.|+. +.+..+..
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~  221 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR  221 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC
Confidence            567777777665544  4789999999999988776543 4432   23  36899999999999985 44445543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.16  E-value=4.7e-10  Score=101.86  Aligned_cols=110  Identities=24%  Similarity=0.381  Sum_probs=74.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      |||+||||||+|+++|..|++.|++|+|+|+.+.   .+ .....             ..          +..+   .+ 
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---gg-~~~~~-------------~~----------~~~~---~~-   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP---GG-QLTTT-------------TE----------VENY---PG-   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC---Cc-ceeec-------------cc----------cccc---CC-
Confidence            6999999999999999999999999999998752   11 00000             00          0000   00 


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                          +.            ..+....+...+.+.+  .++++++ ++|++++..++.+.+++.++.++++|.||.|+|...
T Consensus        50 ----~~------------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        50 ----FP------------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             ----CC------------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence                00            0011122333333322  2688888 899999988888888888888899999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.16  E-value=1.6e-10  Score=111.49  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=80.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++||++|..|.+.|++|+++||.+..   |.-+....+.     .-|       ....++.....   .  
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i---GG~W~~~~~~-----~~g-------~~~~y~sl~~n---~--   61 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI---GGLWRYTENP-----EDG-------RSSVYDSLHTN---T--   61 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS---SGGGCHSTTC-----CCS-------EGGGSTT-B-S---S--
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC---CccCeeCCcC-----CCC-------ccccccceEEe---e--
Confidence            48999999999999999999999999999999773   2111111000     000       00011111111   0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCC--C--ceEEeCCeEEEEEEeC-----CeEEEEecCCc---EEecc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--S--GTIRYSSQVVSIEESG-----HFKLLHLADGT---ILKTK  152 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~--~~i~~~~~v~~i~~~~-----~~v~v~~~~g~---~~~ad  152 (409)
                      ......+.+.+.+..+ ....++.++.++|.+.+.  +  -.|+++|+|+++++.+     +.|.|++.++.   +..+|
T Consensus        62 sk~~~~fsdfp~p~~~-p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD  140 (531)
T PF00743_consen   62 SKEMMAFSDFPFPEDY-PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD  140 (531)
T ss_dssp             -GGGSCCTTS-HCCCC-SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC
T ss_pred             CchHhcCCCcCCCCCC-CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC
Confidence            0011112221111111 124688999999988663  2  3799999999998865     36999886542   45689


Q ss_pred             EEEecCCCch
Q 015303          153 VLIGCDGVNS  162 (409)
Q Consensus       153 ~vV~AdG~~S  162 (409)
                      .||.|+|.++
T Consensus       141 ~VvvatG~~~  150 (531)
T PF00743_consen  141 AVVVATGHFS  150 (531)
T ss_dssp             EEEEEE-SSS
T ss_pred             eEEEcCCCcC
Confidence            9999999986

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02268 probable polyamine oxidase

Probab=99.14  E-value=6.6e-10  Score=106.35  Aligned_cols=41  Identities=20%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +++|+++++|++|...++++.|++.+|+++.||.||.|.-.
T Consensus       210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            45799999999999998899999999988999999999853

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.14  E-value=9.6e-09  Score=100.18  Aligned_cols=61  Identities=26%  Similarity=0.426  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      ..+.+.|.+.+  .+++|+++++|++|..++++ +.|++.+|++++||.||.|.+......+.+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence            45666666654  37899999999999887765 678888888899999999999877776655

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.7e-10  Score=98.52  Aligned_cols=112  Identities=23%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.+||+|||||||||++|.++++++++ ++|+|+... .  +.                          +.... ...+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g~--------------------------~~~~~-~veny   51 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--GQ--------------------------LTKTT-DVENY   51 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--Cc--------------------------cccce-eecCC
Confidence            468999999999999999999999999 666665432 1  10                          00000 00000


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .+       +          ...+.-..|.+.+.+.+  .++++.. ..|..++..++.+.|++.++. ++|+.||.|+|
T Consensus        52 pg-------~----------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG  112 (305)
T COG0492          52 PG-------F----------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATG  112 (305)
T ss_pred             CC-------C----------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcC
Confidence            00       0          00134456677776665  4667666 677777776668899999988 99999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ....
T Consensus       113 ~~~~  116 (305)
T COG0492         113 AGAR  116 (305)
T ss_pred             Cccc
Confidence            8653

>PLN02576 protoporphyrinogen oxidase

Probab=99.13  E-value=2.5e-08  Score=97.15  Aligned_cols=37  Identities=32%  Similarity=0.651  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      .++||+|||||++||++|+.|++. |++|+|+|+++.+
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv   48 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV   48 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            357999999999999999999999 9999999998764

>PLN02661 Putative thiazole synthesis

Probab=99.12  E-value=9.6e-10  Score=98.76  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=76.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcc--cceecc-----ccHHHHHHHcCchhHHHhccccccce
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTG--FAFTVW-----TNAWKALDAVGIGNSLRQQHQQLRSI   75 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~--~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (409)
                      ++||+|||||++|+++|+.|++. |++|+|+||...+....  .+..+.     ....++|+++|+.         ++. 
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd~-  161 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP---------YDE-  161 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC---------ccc-
Confidence            57999999999999999999986 89999999987653211  111111     1122333333331         100 


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE-EEe------cC
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHL------AD  145 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~------~~  145 (409)
                           ..+                + ....+-..+.+.|.+.+   ++++++.++.+.++..+++.+. +.+      .+
T Consensus       162 -----~dg----------------y-~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~  219 (357)
T PLN02661        162 -----QEN----------------Y-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN  219 (357)
T ss_pred             -----CCC----------------e-eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc
Confidence                 000                0 00011123334444432   4789999999999987766522 221      11


Q ss_pred             --------CcEEeccEEEecCCCchH
Q 015303          146 --------GTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       146 --------g~~~~ad~vV~AdG~~S~  163 (409)
                              ...++|+.||.|+|..++
T Consensus       220 ~~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        220 HDTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             cCCCCccceeEEECCEEEEcCCCCCc
Confidence                    126899999999996554

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.11  E-value=6.3e-10  Score=107.35  Aligned_cols=38  Identities=29%  Similarity=0.527  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.++||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus         1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            67789999999999999999999999999999999863

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.11  E-value=9.8e-10  Score=102.70  Aligned_cols=55  Identities=18%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             eccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .++...+...|.+.+   .+++++.+++|++++..    .|++.+|. ++||.||.|+|.+|.
T Consensus       141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence            566777777777653   37899999999999643    56677665 789999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02730 carot_isom carotene isomerase

Probab=99.11  E-value=1.3e-08  Score=98.86  Aligned_cols=62  Identities=27%  Similarity=0.297  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhhC
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWLG  169 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (409)
                      ..+.+.|.+.+  .+++|+++++|+.|..++++ +.|.+.+|+++++|.||.|.|.+..+++.++
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~  293 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK  293 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence            45556666554  37899999999999876554 5677888888999999999999988877763

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.09  E-value=4.2e-09  Score=99.23  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             ceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeC-CeEEEEecCCcEEeccEEEecCCCchHH-HhhhCCCCCcccc
Q 015303          102 MRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESG-HFKLLHLADGTILKTKVLIGCDGVNSIV-AKWLGFKNPAFVG  177 (409)
Q Consensus       102 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~~~~~  177 (409)
                      ...++...+.+.|+..+.  ++.|+.+|.|++|.... +.+-|++..|. +++..+|.|+|.|... -+..+...|-.+-
T Consensus       181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~  259 (856)
T KOG2844|consen  181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPM  259 (856)
T ss_pred             CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceee
Confidence            347888999999987663  78999999999997554 45778888887 9999999999999754 3344666665555


Q ss_pred             eeeEEEeecCCC
Q 015303          178 RSAIRGYSDFKG  189 (409)
Q Consensus       178 ~~~~~~~~~~~~  189 (409)
                      .+.+.-...++.
T Consensus       260 ~H~YvvT~~IeG  271 (856)
T KOG2844|consen  260 HHAYVVTSRIEG  271 (856)
T ss_pred             eeeEEEecccCC
Confidence            555555444443

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.09  E-value=1.3e-09  Score=106.06  Aligned_cols=110  Identities=25%  Similarity=0.301  Sum_probs=76.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||+|+++|..|++.|++|+|+|+.     .|. . +.       ...++           .   ..   . 
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-----~GG-~-~~-------~~~~~-----------~---~~---~-  258 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-----FGG-Q-VL-------DTMGI-----------E---NF---I-  258 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CCC-e-ee-------ccCcc-----------c---cc---C-
Confidence            589999999999999999999999999999753     111 0 00       00000           0   00   0 


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                          .+  .           ......+.+.|.+.+  -+++++++++|+++...++.+.+++.++.++.+|.||.|+|..
T Consensus       259 ----~~--~-----------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        259 ----SV--P-----------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             ----CC--C-----------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence                00  0           012234444444433  2689999999999998877888888888889999999999986


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      +
T Consensus       322 ~  322 (517)
T PRK15317        322 W  322 (517)
T ss_pred             c
Confidence            5

>PLN02676 polyamine oxidase

Probab=99.08  E-value=3.5e-08  Score=95.02  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhhCC--------CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303          107 RKLLLETLAKELP--------SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       107 r~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      -..+.+.|.+.+.        +.+|+++++|++|..++++|+|++.+|++++||.||.|...+.
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v  286 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV  286 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence            3556677766542        2579999999999999999999999999999999999998543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.06  E-value=2.4e-09  Score=104.18  Aligned_cols=110  Identities=23%  Similarity=0.329  Sum_probs=74.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||||+++|..|++.|++|+|+|..     .| |...        ...+              +..+   .+
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-----~G-G~~~--------~~~~--------------~~~~---~~  260 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-----IG-GQVK--------DTVG--------------IENL---IS  260 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CC-Cccc--------cCcC--------------cccc---cc
Confidence            589999999999999999999999999999743     11 1000        0000              0000   00


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                             ..           ......+.+.+.+.+  .+++++.+++|+++..+++.+.+++.++.++.+|.||.|+|..
T Consensus       261 -------~~-----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       261 -------VP-----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             -------cC-----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence                   00           011122333333222  2789999999999988777788888888889999999999986


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      .
T Consensus       323 ~  323 (515)
T TIGR03140       323 W  323 (515)
T ss_pred             c
Confidence            3

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.05  E-value=3e-07  Score=84.06  Aligned_cols=201  Identities=16%  Similarity=0.028  Sum_probs=100.3

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhhCCC--CCcccce--------eeEEEeecCCC
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFK--NPAFVGR--------SAIRGYSDFKG  189 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~--~~~~~~~--------~~~~~~~~~~~  189 (409)
                      +-.|..+.+|..|.+.+++|+|++.+..++++|++|.+-= .+.+ .++...  .+....+        .+....+.++.
T Consensus       220 ~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP-l~~l-~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~r  297 (450)
T COG1231         220 GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP-LAIL-GQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSR  297 (450)
T ss_pred             hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC-HHHH-hhcccCCCCCHHHHHHhcCcCcchheeeeeecCc
Confidence            4578889999999999999999999966799999998765 3332 222222  1111000        00111122222


Q ss_pred             CCCCC---CceeeeecCCcEEEEEecC---CCeEEEEEE--ecCCCcCcccccChHHHHHHHHHHhCCCCh-HHHHHHHc
Q 015303          190 SHGFE---PNFLQFFGKGLRSGFIPCD---DQTIYWFFT--WTSSSQDKELEDHSAELKQFVLGKLHDLPA-QVKAVIEK  260 (409)
Q Consensus       190 ~~~~~---~~~~~~~~~~~~~~~~p~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  260 (409)
                      +.-..   -.-..+......+..+|-.   ++.. ..+.  ...+........++++..+.++..+....+ .....++.
T Consensus       298 pFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~g-Vl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~  376 (450)
T COG1231         298 PFWEEAGILGGESLTDLGLGFISYPSAPFADGPG-VLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDY  376 (450)
T ss_pred             hhhhhcccCCceEeecCCcceEecCccccCCCce-EEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhcccccc
Confidence            11000   1112222333333334443   3322 1222  113333344677788888888887774433 44333332


Q ss_pred             CCCCceEeeccccc---Ccccccccc------cCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh
Q 015303          261 TPLDSIISSRLQYR---QPQEVLWGN------ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK  326 (409)
Q Consensus       261 ~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~  326 (409)
                      .....+...+....   ...+-...+      -..+||.++|   --..|..+.=+.-|++++..+|..|...+.
T Consensus       377 ~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Ag---tEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~  448 (450)
T COG1231         377 GASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAG---TEHASEFGGWLEGAIRSGQRAAAEIHALLS  448 (450)
T ss_pred             ceeeecccCCcCCccccccCCcccccccccccCCCCceEEee---ecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence            11111100000000   000000001      1347888887   123445555566799999999999887654

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.05  E-value=2.3e-09  Score=103.08  Aligned_cols=143  Identities=18%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccc----cHHHHHHHcC-chhHHHhccccccceeee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWT----NAWKALDAVG-IGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~----~~~~~l~~~g-l~~~~~~~~~~~~~~~~~   78 (409)
                      |||+|||||++|+.+|..+++.|.+|+|+|++... ...+|.-.+..    ...+.++.+| ....+.+..    .+.+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~----~i~~r   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKA----GLQFR   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhh----ceehe
Confidence            69999999999999999999999999999987431 11122111111    0122333332 111111100    11111


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEe-CC-eEEEEecCCcEEeccE
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GH-FKLLHLADGTILKTKV  153 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~~~ad~  153 (409)
                      .....+          +.........+++..+...+.+.+   ++++++.+ +|+.+..+ ++ .+.|.+.+|..+.|+.
T Consensus        77 ~ln~sk----------gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~  145 (617)
T TIGR00136        77 VLNSSK----------GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKA  145 (617)
T ss_pred             ecccCC----------CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCE
Confidence            100000          000001112578877777776544   46777654 67777554 33 4567888888899999


Q ss_pred             EEecCCCch
Q 015303          154 LIGCDGVNS  162 (409)
Q Consensus       154 vV~AdG~~S  162 (409)
                      ||+|+|.+.
T Consensus       146 VILATGtfL  154 (617)
T TIGR00136       146 VIITTGTFL  154 (617)
T ss_pred             EEEccCccc
Confidence            999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.04  E-value=5.8e-09  Score=101.21  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+|++|+++|+.+++.|.+|+|+||.+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~   96 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA   96 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3689999999999999999999999999999998764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.04  E-value=4.7e-09  Score=85.06  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             EEECCChHHHHHHHHHHHc-----CCceEEEeCCCCcCCcccceecccc-HHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            8 VIVGAGIAGLTTSLGLYRL-----GIRSMVLESSESLRVTGFAFTVWTN-AWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         8 ~IiG~G~aGl~~A~~L~~~-----g~~V~v~E~~~~~~~~~~~~~~~~~-~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +||||||+|++++..|.+.     ..+|+|||+.+.    +.|..+.+. ....+  ++...........-.+..+..+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~l--lN~~a~~~s~~~~~~~~~f~~Wl   74 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSHL--LNTPADQMSLFPDDPGDDFVDWL   74 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHHh--hcccccccccccccCCCCHHHHH
Confidence            6999999999999999887     468999999543    333333332 11111  11110000000000001111110


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhh-------CC-CceEE-eCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE-------LP-SGTIR-YSSQVVSIEESGHFKLLHLADGTILKTK  152 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~-------~~-~~~i~-~~~~v~~i~~~~~~v~v~~~~g~~~~ad  152 (409)
                      .......       ..........+|..+-++|.+.       ++ +++|. ...+|++++..++++.+.+.+|..+.+|
T Consensus        75 ~~~~~~~-------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d  147 (156)
T PF13454_consen   75 RANGADE-------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD  147 (156)
T ss_pred             HhcCccc-------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence            0000000       0001112235555555444432       22 44443 3679999999999999999999999999


Q ss_pred             EEEecCCC
Q 015303          153 VLIGCDGV  160 (409)
Q Consensus       153 ~vV~AdG~  160 (409)
                      .||.|+|.
T Consensus       148 ~VvLa~Gh  155 (156)
T PF13454_consen  148 AVVLATGH  155 (156)
T ss_pred             EEEECCCC
Confidence            99999995

>PLN02487 zeta-carotene desaturase

Probab=99.03  E-value=1.4e-07  Score=91.75  Aligned_cols=61  Identities=26%  Similarity=0.475  Sum_probs=47.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC--------ccc----ce----eccccHHHHHHHcCchhHH
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV--------TGF----AF----TVWTNAWKALDAVGIGNSL   65 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~--------~~~----~~----~~~~~~~~~l~~~gl~~~~   65 (409)
                      .+|+|||||++|+++|+.|++.|++|+|+|+.+.+..        .+.    |.    ...++..++++++|+.+.+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~  152 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL  152 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence            5999999999999999999999999999999876531        111    11    1235678899999987654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.03  E-value=6.8e-08  Score=90.10  Aligned_cols=61  Identities=23%  Similarity=0.460  Sum_probs=47.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCC-------c-------ccceecc-ccHHHHHHHcCchhHHH
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRV-------T-------GFAFTVW-TNAWKALDAVGIGNSLR   66 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~-------~-------~~~~~~~-~~~~~~l~~~gl~~~~~   66 (409)
                      .|+|||||++||++|+.|++++  .+|+|+|+++...-       .       +...... +..++.+.++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6999999999999999999999  99999999864311       1       1122233 56778888999887776

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.03  E-value=4.8e-08  Score=97.60  Aligned_cols=36  Identities=36%  Similarity=0.644  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +.+|+|||||++|+++|+.|++.|++|+|+|++..+
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            478999999999999999999999999999998754

>PLN02529 lysine-specific histone demethylase 1

Probab=99.02  E-value=3.8e-08  Score=97.85  Aligned_cols=35  Identities=37%  Similarity=0.672  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||++|+++|..|+++|++|+|+|+++.
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            47999999999999999999999999999999764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.02  E-value=2.3e-09  Score=103.21  Aligned_cols=38  Identities=29%  Similarity=0.536  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+.
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~   38 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST   38 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            67789999999999999999999999999999998753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.02  E-value=3.3e-09  Score=104.01  Aligned_cols=113  Identities=20%  Similarity=0.327  Sum_probs=73.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |.+.|||+||||||||+++|..|+++|++|+|+|++..    + |.....            ..+            .+ 
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----G-G~~~~~------------~~i------------~~-   50 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----G-GQITIT------------SEV------------VN-   50 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----C-ceEEec------------ccc------------cc-
Confidence            66679999999999999999999999999999998632    1 110000            000            00 


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ..+.                  ..+....+.+.+.+.+  .+++++ +++|+.++.+++.+.+.+.++ .+.++.||.|+
T Consensus        51 ~pg~------------------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlAT  110 (555)
T TIGR03143        51 YPGI------------------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIAT  110 (555)
T ss_pred             CCCC------------------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECC
Confidence            0000                  0112233444443332  256764 778999887766677777666 58999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |....
T Consensus       111 Ga~p~  115 (555)
T TIGR03143       111 GASPR  115 (555)
T ss_pred             CCccC
Confidence            98653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02976 amine oxidase

Probab=99.02  E-value=1.5e-07  Score=97.51  Aligned_cols=36  Identities=42%  Similarity=0.610  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+|||||++|+++|+.|++.|++|+|+|+++.+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            479999999999999999999999999999997644

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.99  E-value=3.3e-09  Score=102.39  Aligned_cols=36  Identities=28%  Similarity=0.560  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |...|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            667899999999999999999999999999999986

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.99  E-value=1e-07  Score=91.74  Aligned_cols=59  Identities=31%  Similarity=0.481  Sum_probs=45.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------c----cc----eeccccHHHHHHHcCchhH
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------G----FA----FTVWTNAWKALDAVGIGNS   64 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~----~~----~~~~~~~~~~l~~~gl~~~   64 (409)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+.-.        +    .|    ....++..++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            5899999999999999999999999999998754211        1    11    1123678899999987543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN03000 amine oxidase

Probab=98.99  E-value=1.4e-07  Score=94.36  Aligned_cols=36  Identities=39%  Similarity=0.660  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+.+|..|++.|++|+|+|+++.+
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            479999999999999999999999999999998754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.99  E-value=1.2e-07  Score=91.37  Aligned_cols=60  Identities=32%  Similarity=0.528  Sum_probs=45.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------ccc--------eeccccHHHHHHHcCchhHH
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------GFA--------FTVWTNAWKALDAVGIGNSL   65 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~--------~~~~~~~~~~l~~~gl~~~~   65 (409)
                      +|+|||||++|+++|+.|+++|++|+|+|+++.+...        +..        ....++..++++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            5899999999999999999999999999998765311        110        01234567888888876544

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.98  E-value=2e-09  Score=99.26  Aligned_cols=112  Identities=18%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------ccceeccccHHHHHHHcCchh-HHHhccccccce
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------GFAFTVWTNAWKALDAVGIGN-SLRQQHQQLRSI   75 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~   75 (409)
                      .||+|||||++|+.+|+.|+++|++|+|+|+++.+...        ......+..+...+...|++. ++...+.    .
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l   78 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L   78 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence            59999999999999999999999999999987654211        122233444556677778764 3333221    1


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEE
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIE  133 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~  133 (409)
                      .+.. ..     ....+      ......++|..+.+.|.+.+   ++++++ ..+|+++.
T Consensus        79 ~~~a-ad-----~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         79 IMEA-AD-----AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             heec-cc-----ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence            1110 00     01111      11223688888888887765   567887 56787774

>PRK06370 mercuric reductase; Validated

Probab=98.97  E-value=3.2e-09  Score=102.24  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ||.+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            6778999999999999999999999999999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.97  E-value=8.6e-09  Score=98.73  Aligned_cols=34  Identities=35%  Similarity=0.666  Sum_probs=32.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~   39 (409)
                      ||+|||||++|+++|+.++++| .+|+|+||.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999999 999999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.96  E-value=4.1e-09  Score=101.42  Aligned_cols=35  Identities=26%  Similarity=0.519  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+++|..+++.|.+|+|+|++.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~   36 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS   36 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            35999999999999999999999999999999754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.94  E-value=1.9e-08  Score=99.04  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE----EEecCCc--EEeccEEEecCCCchHH
Q 015303          108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~~~ad~vV~AdG~~S~v  164 (409)
                      ..+...|.+.+   ++++++.++.++++..+++.+.    +...+++  .+.|+.||.|||..|.+
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            34555555543   4689999999999987766543    2344664  68999999999999875

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.94  E-value=1.4e-08  Score=100.21  Aligned_cols=34  Identities=35%  Similarity=0.618  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ||+|||||+||+++|+.+++.|.+|+|+||....
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            8999999999999999999999999999998653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.94  E-value=2.4e-08  Score=94.88  Aligned_cols=38  Identities=29%  Similarity=0.539  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |...+||+|||+|.||+++|+.++ .|.+|+|+||.+..
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            556799999999999999999985 69999999998754

>PRK09897 hypothetical protein; Provisional

Probab=98.94  E-value=4.6e-09  Score=101.04  Aligned_cols=145  Identities=16%  Similarity=0.144  Sum_probs=78.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceecccc--HHHHHHHcC---c---hhHHHhccccccc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTN--AWKALDAVG---I---GNSLRQQHQQLRS   74 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~--~~~~l~~~g---l---~~~~~~~~~~~~~   74 (409)
                      .+|+||||||+|+++|..|.+.+  ++|+|||++..+   |.|..+++.  +..++-...   +   ...+.+-... ..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~-~~   77 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQK-QE   77 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCCChHHHHHHhhh-hh
Confidence            48999999999999999998865  589999997653   344444431  222221110   0   0011000000 00


Q ss_pred             eeeeecCCCCcccccccccccccCCccceecc----HHHHHHHHHhhC--CC--ceEEeCCeEEEEEEeCCeEEEEecCC
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVR----RKLLLETLAKEL--PS--GTIRYSSQVVSIEESGHFKLLHLADG  146 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----r~~l~~~L~~~~--~~--~~i~~~~~v~~i~~~~~~v~v~~~~g  146 (409)
                      ..... ..+......  . .+   .+..+.+.    +..|... .+.+  .+  +.++.+++|++++..++++.+++.++
T Consensus        78 ~~~~~-~~g~~~~~l--~-~~---~f~PR~l~G~YL~~~f~~l-~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g  149 (534)
T PRK09897         78 DSHLQ-RYGVKKETL--H-DR---QFLPRILLGEYFRDQFLRL-VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD  149 (534)
T ss_pred             HHHHH-hcCCcceee--c-CC---ccCCeecchHHHHHHHHHH-HHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC
Confidence            00000 000000000  0 00   11111122    2333332 2332  23  67788999999999888899988654


Q ss_pred             -cEEeccEEEecCCCc
Q 015303          147 -TILKTKVLIGCDGVN  161 (409)
Q Consensus       147 -~~~~ad~vV~AdG~~  161 (409)
                       .++.+|.||.|+|..
T Consensus       150 g~~i~aD~VVLAtGh~  165 (534)
T PRK09897        150 LPSETFDLAVIATGHV  165 (534)
T ss_pred             CeEEEcCEEEECCCCC
Confidence             679999999999963

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.93  E-value=2.1e-08  Score=98.91  Aligned_cols=36  Identities=33%  Similarity=0.571  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      ..+||+|||||+||+++|+.+++.|  .+|+|+||...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            4589999999999999999999874  89999999865

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=1.7e-08  Score=99.53  Aligned_cols=37  Identities=27%  Similarity=0.487  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+|||++|+.+++.|   .+|+|+||....
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~   43 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM   43 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence            4689999999999999999999998   899999998754

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.92  E-value=2.2e-08  Score=98.34  Aligned_cols=57  Identities=16%  Similarity=0.087  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE----EEecCCc--EEeccEEEecCCCchHH
Q 015303          108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~~~ad~vV~AdG~~S~v  164 (409)
                      ..+...|.+.+   ++++++.++.++++..+++.+.    +...+|+  .+.|+.||.|||..+.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            45666666543   4689999999999987766543    2334564  68899999999998864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.91  E-value=2e-08  Score=98.21  Aligned_cols=37  Identities=38%  Similarity=0.620  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            3589999999999999999999999999999998754

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.91  E-value=1.9e-08  Score=92.12  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe-EEEEecC---C--cEEeccEEEecCCCchHH-HhhhCCCCC
Q 015303          105 VRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLAD---G--TILKTKVLIGCDGVNSIV-AKWLGFKNP  173 (409)
Q Consensus       105 i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~~---g--~~~~ad~vV~AdG~~S~v-r~~l~~~~~  173 (409)
                      ++-..|.+.|.+.+   ++++++++++|++|.+.+++ |.|+..|   +  .++++++|++..|.+|-. .+..|++..
T Consensus       178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~  256 (488)
T PF06039_consen  178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEG  256 (488)
T ss_pred             ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhh
Confidence            44455555555443   47899999999999998766 9998753   2  379999999988888754 455566543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.91  E-value=2e-08  Score=96.59  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +||+|||||+||+++|+.+++.|.+|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.89  E-value=8e-09  Score=98.94  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|+++|..++++|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.89  E-value=1.5e-08  Score=96.58  Aligned_cols=58  Identities=28%  Similarity=0.282  Sum_probs=39.0

Q ss_pred             cHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEe---cCCc--EEeccEEEecCCCchH
Q 015303          106 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHL---ADGT--ILKTKVLIGCDGVNSI  163 (409)
Q Consensus       106 ~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~---~~g~--~~~ad~vV~AdG~~S~  163 (409)
                      ....+.+.|.+.+  .+++|+++++++++..++++|+ +..   .+++  +++|+.||.|+|..+.
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            3456666666654  3699999999999999887633 222   2444  6889999999999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.88  E-value=1e-08  Score=98.87  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|||+||||||+|+++|..|++.|++|+|+|++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~   39 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN   39 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            469999999999999999999999999999998654

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.88  E-value=5.7e-08  Score=95.39  Aligned_cols=37  Identities=35%  Similarity=0.627  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.++||+|||+|.|||++|+.+++.|.+|+|+||.+
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6778999999999999999999999999999999987

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.88  E-value=2.3e-08  Score=95.84  Aligned_cols=35  Identities=34%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+.+|+.|+++|++|+|+|+.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            56999999999999999999999999999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.88  E-value=2.8e-08  Score=98.34  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      ++||+|||||+||+++|+.+++.  |.+|+|+||....
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            47999999999999999999998  9999999998753

>PRK06116 glutathione reductase; Validated

Probab=98.87  E-value=1.3e-08  Score=97.65  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |+.+|||+||||||+|+++|..|+++|++|+|+|+.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            666799999999999999999999999999999986

>TIGR00551 nadB L-aspartate oxidase

Probab=98.87  E-value=3.5e-08  Score=95.54  Aligned_cols=58  Identities=10%  Similarity=0.086  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE-EEecC-C--cEEeccEEEecCCCchHHH
Q 015303          108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHLAD-G--TILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~-g--~~~~ad~vV~AdG~~S~vr  165 (409)
                      ..+...|.+.+   ++++++++++++++..+++.+. +...+ +  ..++++.||.|+|.+|.+.
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~  192 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLY  192 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence            45666666544   4789999999999987666543 33332 2  3689999999999999753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.87  E-value=4.1e-08  Score=89.95  Aligned_cols=112  Identities=20%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++.+||+||||||||+++|..|+++|++|+++|+...   .+. ....+                         ..... 
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~---gg~-~~~~~-------------------------~~~~~-   53 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK---GGQ-LTTTT-------------------------EVENW-   53 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC---CCc-eecCc-------------------------eECCC-
Confidence            3568999999999999999999999999999995422   111 10000                         00000 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .+..                 ..+....+.+.+.+...  +.++.++ +|+.++..++.++++..++ .+.+|.||.|+|
T Consensus        54 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG  114 (321)
T PRK10262         54 PGDP-----------------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATG  114 (321)
T ss_pred             CCCC-----------------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCC
Confidence            0000                 00112233333333221  3455554 5777877777777766544 689999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       115 ~~~  117 (321)
T PRK10262        115 ASA  117 (321)
T ss_pred             CCC
Confidence            864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=6.4e-08  Score=96.19  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            579999999999999999999999999999986543

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.86  E-value=8.8e-07  Score=77.44  Aligned_cols=36  Identities=31%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||..|++.|+.|.+    .|++|+|+||++..
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            5799999999999999999976    47999999998754

>PRK14694 putative mercuric reductase; Provisional

Probab=98.84  E-value=1.3e-08  Score=98.18  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            6999999999999999999999999999999863

>PRK07121 hypothetical protein; Validated

Probab=98.83  E-value=2e-08  Score=97.51  Aligned_cols=36  Identities=33%  Similarity=0.511  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            589999999999999999999999999999998764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=1.6e-08  Score=97.64  Aligned_cols=35  Identities=29%  Similarity=0.574  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      |..+|||+||||||+|+++|..+++.|.+|+|+|+
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            66789999999999999999999999999999998

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.82  E-value=9.1e-09  Score=87.55  Aligned_cols=33  Identities=42%  Similarity=0.758  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=7.4e-08  Score=95.70  Aligned_cols=36  Identities=33%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|+||+++|+.+++.|.+|+|+||....
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            589999999999999999999999999999998643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.81  E-value=1.1e-08  Score=98.56  Aligned_cols=36  Identities=31%  Similarity=0.582  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ||.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            677899999999999999999999999999999986

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.80  E-value=1.8e-08  Score=96.43  Aligned_cols=35  Identities=17%  Similarity=0.442  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            36999999999999999999999999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.80  E-value=1.7e-07  Score=90.46  Aligned_cols=46  Identities=13%  Similarity=0.145  Sum_probs=38.7

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCCCchHHH
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~S~vr  165 (409)
                      +++++.+++|++++.+++.+.+.+.+|  .++.+|.||.|.|..+...
T Consensus       225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            689999999999988777787877777  4799999999999876543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.78  E-value=1.9e-07  Score=66.28  Aligned_cols=80  Identities=28%  Similarity=0.394  Sum_probs=62.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKP   85 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+.+.                  +..                      
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~~~----------------------   40 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------FDP----------------------   40 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------SSH----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------cCH----------------------
Confidence            5899999999999999999999999999998763310                  000                      


Q ss_pred             ccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC
Q 015303           86 SSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG  146 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g  146 (409)
                                         -.+..+.+.|.+.  ++++++++.++.++.++++++|+++||
T Consensus        41 -------------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   41 -------------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             -------------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                               0123345555554  899999999999999987777888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.78  E-value=2.5e-08  Score=93.85  Aligned_cols=37  Identities=32%  Similarity=0.582  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.+||++|||+||+|..+|..+++.|.+|+++|+..
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            6778999999999999999999999999999999995

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.77  E-value=1.2e-07  Score=89.52  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=37.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |++.|||+|||+|++|+.+|..|++.|.+|+++|+++...
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG   40 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG   40 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence            7888999999999999999999999999999999997653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.77  E-value=2.9e-08  Score=94.98  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|||+||||||||+++|..|++.|.+|+|+||++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            469999999999999999999999999999999853

>PRK08275 putative oxidoreductase; Provisional

Probab=98.77  E-value=1.2e-07  Score=93.24  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      .+||+|||||+||+++|+.+++.  |.+|+|+||....
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            48999999999999999999987  6899999998753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=4.8e-08  Score=94.24  Aligned_cols=35  Identities=23%  Similarity=0.532  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46999999999999999999999999999999875

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.75  E-value=1.3e-06  Score=80.11  Aligned_cols=35  Identities=43%  Similarity=0.690  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||||+||+++|..|.+.|. +|+|+|..+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR   56 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR   56 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence            4689999999999999999997765 8999998774

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=1.8e-07  Score=91.93  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            458999999999999999999999999999999864

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.74  E-value=1.8e-07  Score=91.82  Aligned_cols=37  Identities=30%  Similarity=0.539  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4689999999999999999999999999999998754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.74  E-value=2.1e-08  Score=68.29  Aligned_cols=32  Identities=41%  Similarity=0.672  Sum_probs=29.2

Q ss_pred             EECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         9 IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |||||++||++|+.|++.|++|+|+|+++.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999998754

...

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.73  E-value=1.6e-07  Score=91.14  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~   37 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR   37 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence            35899999999999999999987 8999999998754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.72  E-value=8.9e-08  Score=94.49  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999998643

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.72  E-value=4e-08  Score=90.67  Aligned_cols=56  Identities=16%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHH
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDA   58 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~   58 (409)
                      ..|||+|||||-+|.-+|+-.+-+|++|.|+|++++.. ..+++..+-..+.++|++
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek  122 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK  122 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence            35999999999999999999999999999999998753 233444444555666554

>PLN02507 glutathione reductase

Probab=98.72  E-value=8.4e-08  Score=92.87  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|||+||||||+|+.+|..+++.|.+|+|+|+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999997

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=2.4e-07  Score=91.50  Aligned_cols=37  Identities=19%  Similarity=0.397  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4579999999999999999999999999999988653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.70  E-value=7.2e-08  Score=89.64  Aligned_cols=34  Identities=21%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .||+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            4899999999999999999999999999998765

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.70  E-value=6.4e-08  Score=95.52  Aligned_cols=36  Identities=28%  Similarity=0.625  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            589999999999999999999999999999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.70  E-value=3.3e-07  Score=91.37  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||||.|||++|+.+++.|.+|+|+||.+..
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            589999999999999999999999999999998654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=2.7e-07  Score=91.26  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            57999999999999999999999999999999764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.69  E-value=1.8e-07  Score=92.49  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999999987

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=4.1e-07  Score=89.88  Aligned_cols=35  Identities=34%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++||+|||||+||+++|+.+++. .+|+|+||...
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence            468999999999999999999986 89999999864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=2.4e-07  Score=90.91  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+|||+|.||+++|+.+ +.|.+|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            47999999999999999999 89999999999753

>PLN02815 L-aspartate oxidase

Probab=98.68  E-value=2.5e-07  Score=90.93  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||+|.|||++|+.+++.| +|+|+||....
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            589999999999999999999999 99999998753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.67  E-value=4.8e-07  Score=89.69  Aligned_cols=36  Identities=39%  Similarity=0.558  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||.||+++|+.+++.|.+|+|+||....
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            579999999999999999999999999999998653

>PRK14727 putative mercuric reductase; Provisional

Probab=98.66  E-value=1.3e-07  Score=91.39  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++||+||||||+|+++|..|++.|.+|+|+|++..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~   50 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV   50 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            368999999999999999999999999999998744

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.66  E-value=5.4e-07  Score=89.39  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|+||+++|+.+++.|.+|+|+||....
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            479999999999999999999999999999998643

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.64  E-value=5.2e-07  Score=89.05  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~   41 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP   41 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            57999999999999999999999999999999854

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=8.7e-07  Score=87.59  Aligned_cols=35  Identities=43%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            57999999999999999999999999999999753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.62  E-value=4.6e-07  Score=85.55  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=70.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+.+|+|||||+||+.+|..|++.|.  +|+|+++.+.....-.     +          +...+...            
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-----~----------l~~~~~~~------------   54 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-----P----------LSKSMLLE------------   54 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-----C----------CCHHHHCC------------
Confidence            45699999999999999999999886  7999998865321100     0          11111000            


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ...+.   ..             ...    .+++.+  .+++++.+++|+.++.+..  .+++.+|.++.+|.||.|+|.
T Consensus        55 ~~~~~---~~-------------~~~----~~~~~~--~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs  110 (396)
T PRK09754         55 DSPQL---QQ-------------VLP----ANWWQE--NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGA  110 (396)
T ss_pred             CCccc---cc-------------cCC----HHHHHH--CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCC
Confidence            00000   00             000    112222  2789999999999987654  455678888999999999998


Q ss_pred             ch
Q 015303          161 NS  162 (409)
Q Consensus       161 ~S  162 (409)
                      ..
T Consensus       111 ~~  112 (396)
T PRK09754        111 AA  112 (396)
T ss_pred             CC
Confidence            75

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.62  E-value=3.6e-07  Score=88.99  Aligned_cols=35  Identities=20%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~   41 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF   41 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            5899999999 9999999999999999999998753

>TIGR02053 MerA mercuric reductase

Probab=98.61  E-value=1.2e-07  Score=91.46  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            799999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.61  E-value=3.1e-07  Score=88.64  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ++|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4599999999999999999999999999999984

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.60  E-value=7e-07  Score=87.40  Aligned_cols=35  Identities=34%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||+|+||+++|+.+++. .+|+|+||....
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            58999999999999999999986 899999998653

>PTZ00058 glutathione reductase; Provisional

Probab=98.60  E-value=9.5e-08  Score=93.11  Aligned_cols=34  Identities=21%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|||+||||||+|.++|..+++.|.+|+|||++
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            3689999999999999999999999999999986

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.60  E-value=4.5e-07  Score=88.17  Aligned_cols=33  Identities=36%  Similarity=0.452  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||+|.|||++|+.++  |.+|+|+||.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            589999999999999999997  569999999875

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.60  E-value=3.4e-07  Score=89.89  Aligned_cols=37  Identities=24%  Similarity=0.552  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.+++.|.+|+||||....
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3689999999999999999999999999999998653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.59  E-value=6.3e-07  Score=85.68  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+|||||++|+.+|..|++.  +.+|+|+|+.+......++.               +..+.  +       ..  ...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~l---------------p~~~~--~-------~~--~~~   56 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL---------------PYYIG--E-------VV--EDR   56 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCc---------------chhhc--C-------cc--CCH
Confidence            899999999999999999886  57999999987633222111               00000  0       00  000


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC-c--EEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG-T--ILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~--~~~ad~vV~AdG~  160 (409)
                      .  ..+              .+..    +.+.++ .+++++.+++|+.|+.++..+.+...++ +  ++++|.||.|+|.
T Consensus        57 ~--~~~--------------~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs  115 (438)
T PRK13512         57 K--YAL--------------AYTP----EKFYDR-KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA  115 (438)
T ss_pred             H--Hcc--------------cCCH----HHHHHh-CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC
Confidence            0  000              0111    222222 2789999999999998888777765432 2  4689999999997


Q ss_pred             ch
Q 015303          161 NS  162 (409)
Q Consensus       161 ~S  162 (409)
                      ..
T Consensus       116 ~~  117 (438)
T PRK13512        116 SA  117 (438)
T ss_pred             CC
Confidence            65

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.59  E-value=7.7e-07  Score=83.49  Aligned_cols=107  Identities=19%  Similarity=0.307  Sum_probs=79.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                                  ..      
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~------  181 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------------------------LM------  181 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------------------------hC------
Confidence            47999999999999999999999999999987542100                                  00      


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch--
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS--  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S--  162 (409)
                             +       .    -.+..+.+.|.+.  +++++++++++.+..+++.+.+++.+|+++.||+||.|+|..+  
T Consensus       182 -------~-------~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        182 -------P-------P----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             -------C-------H----HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence                   0       0    0012344445432  7899999999999887777888899999999999999999855  


Q ss_pred             HHHhhhCCC
Q 015303          163 IVAKWLGFK  171 (409)
Q Consensus       163 ~vr~~l~~~  171 (409)
                      .+.+..+..
T Consensus       242 ~l~~~~gl~  250 (377)
T PRK04965        242 ALARRAGLA  250 (377)
T ss_pred             HHHHHCCCC
Confidence            344444443

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.58  E-value=4e-07  Score=87.00  Aligned_cols=59  Identities=19%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEe--CCeEE-EEec-CCcEEeccEEEecCCCchHHHh
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEES--GHFKL-LHLA-DGTILKTKVLIGCDGVNSIVAK  166 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~--~~~v~-v~~~-~g~~~~ad~vV~AdG~~S~vr~  166 (409)
                      ..+.+.|.+.+  .+++|+++++|+++..+  ++.+. +... ++.+++++.||.|+|..+..+.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~  187 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRD  187 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence            34556665544  37899999999999876  34433 3333 3347899999999998766443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12839 hypothetical protein; Provisional

Probab=98.56  E-value=3.9e-07  Score=89.54  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.|++.|.+|+|+||....
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.56  E-value=1.4e-07  Score=86.44  Aligned_cols=148  Identities=17%  Similarity=0.202  Sum_probs=74.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHH--HHHHHcCchhHHHhccccccceeeeec
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAW--KALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+|+++||.||++|++|..|...+ .++..+|+.+....+. |+.+....+  .+|+.+      .....|.....+.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl------vt~~~P~s~~sflnY   74 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL------VTLRDPTSPFSFLNY   74 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS------STTT-TTSTTSHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc------CcCcCCCCcccHHHH
Confidence            489999999999999999999886 8999999998776554 222211000  111111      000011111111100


Q ss_pred             --CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCC--ceEEeCCeEEEEEEeCC----eEEEEec----CCcE
Q 015303           81 --ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGH----FKLLHLA----DGTI  148 (409)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~----~v~v~~~----~g~~  148 (409)
                        ..+.. ..+-        ......+.|..+.+++.-.+..  ..+.++++|++|+..++    .++|++.    ++.+
T Consensus        75 L~~~~rl-~~f~--------~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~  145 (341)
T PF13434_consen   75 LHEHGRL-YEFY--------NRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET  145 (341)
T ss_dssp             HHHTT-H-HHHH--------HH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE
T ss_pred             HHHcCCh-hhhh--------hcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE
Confidence              01111 1110        0112246788888777665432  35999999999987754    4888884    3458


Q ss_pred             EeccEEEecCCCchHHHhh
Q 015303          149 LKTKVLIGCDGVNSIVAKW  167 (409)
Q Consensus       149 ~~ad~vV~AdG~~S~vr~~  167 (409)
                      +.|+-||.|+|....+-..
T Consensus       146 ~~ar~vVla~G~~P~iP~~  164 (341)
T PF13434_consen  146 YRARNVVLATGGQPRIPEW  164 (341)
T ss_dssp             EEESEEEE----EE---GG
T ss_pred             EEeCeEEECcCCCCCCCcc
Confidence            9999999999955444333

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.56  E-value=3.8e-07  Score=88.45  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            344689999999999999999999999999999973

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.55  E-value=1.5e-06  Score=86.00  Aligned_cols=32  Identities=25%  Similarity=0.500  Sum_probs=30.3

Q ss_pred             EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|||+|+|||++|+.+++.|.+|+|+||...
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            79999999999999999999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.55  E-value=9.2e-07  Score=84.69  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr  165 (409)
                      +.+|+++++|+.|+.+++++.|++.+|++++||.||.|.......+
T Consensus       223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred             CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence            4589999999999999999999999999999999999888554433

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.55  E-value=1.5e-06  Score=92.35  Aligned_cols=37  Identities=24%  Similarity=0.498  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            3589999999999999999999999999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.55  E-value=8.8e-07  Score=85.11  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=68.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+|||||++|+++|..|++.+  .+|+|||+++......++               +..             +......
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~~~-------------~~~~~~~   53 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------LPY-------------FVGGFFD   53 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------Cce-------------EeccccC
Confidence            7999999999999999999875  589999998763211110               000             0000000


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-CCcEEe--ccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-DGTILK--TKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~--ad~vV~AdG~  160 (409)
                      ..              ..  .+.+  ..+.+.+  .+++++.+++|+.++.++..+.+... ++.+++  +|+||.|+|.
T Consensus        54 ~~--------------~~--~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~  113 (444)
T PRK09564         54 DP--------------NT--MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA  113 (444)
T ss_pred             CH--------------HH--hhcC--CHHHHHH--CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence            00              00  0000  0122222  27899999999999888777777642 355566  9999999997


Q ss_pred             ch
Q 015303          161 NS  162 (409)
Q Consensus       161 ~S  162 (409)
                      ..
T Consensus       114 ~~  115 (444)
T PRK09564        114 RP  115 (444)
T ss_pred             CC
Confidence            64

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.53  E-value=7.2e-07  Score=85.95  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~   36 (409)
                      ++|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            579999999999999999999997 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.52  E-value=6.9e-07  Score=86.06  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .||+||||||+|+.+|..|+++|.+|+|+|+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            389999999999999999999999999999875

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.51  E-value=1e-06  Score=86.16  Aligned_cols=36  Identities=31%  Similarity=0.411  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~   43 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK   43 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence            46899999999999999999974 9999999998653

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.51  E-value=5.2e-07  Score=88.41  Aligned_cols=36  Identities=28%  Similarity=0.643  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            36899999999 8999999999999999999998654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=4e-07  Score=84.00  Aligned_cols=146  Identities=14%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++|+|||+|++|+..|.+|.+.-   -.|.|+|++..   .|+|+.++...-..+  +++...-.....+-..-.++.+-
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~---~G~GiaYs~~~p~~~--lNv~a~~mS~~~pD~p~~F~~WL   76 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN---FGQGIAYSTEEPEHL--LNVPAARMSAFAPDIPQDFVRWL   76 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc---cCCCccCCCCCchhh--hccccccccccCCCCchHHHHHH
Confidence            69999999999999999998842   23999999877   677777766332111  11110000000000000000000


Q ss_pred             CCC--ccc-ccccccccccCCccceeccHHHHHHHHHh-------hCCCceE-EeCCeEEEEEEe--CCeEEEEecCCcE
Q 015303           82 SGK--PSS-ERSLKVQGKYGEHEMRCVRRKLLLETLAK-------ELPSGTI-RYSSQVVSIEES--GHFKLLHLADGTI  148 (409)
Q Consensus        82 ~~~--~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-------~~~~~~i-~~~~~v~~i~~~--~~~v~v~~~~g~~  148 (409)
                      ...  ... ...+...+.  .    ...|..|-++|.+       ..+...+ +...+++++.+.  ...+.++..+|.+
T Consensus        77 ~~~~~~~~d~~~~~~d~~--~----y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~  150 (474)
T COG4529          77 QKQLQRYRDPEDINHDGQ--A----YPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPS  150 (474)
T ss_pred             HhcccccCChhhcCCccc--c----ccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCe
Confidence            000  000 000111111  1    1223333333322       2222223 336677777766  5678899999999


Q ss_pred             EeccEEEecCCCc
Q 015303          149 LKTKVLIGCDGVN  161 (409)
Q Consensus       149 ~~ad~vV~AdG~~  161 (409)
                      ..||.+|.|+|..
T Consensus       151 ~~ad~~Vlatgh~  163 (474)
T COG4529         151 EIADIIVLATGHS  163 (474)
T ss_pred             eeeeEEEEeccCC
Confidence            9999999999954

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.5e-07  Score=87.50  Aligned_cols=145  Identities=18%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccH----HHHHHHcC-chhHH-Hhcccccc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNA----WKALDAVG-IGNSL-RQQHQQLR   73 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~----~~~l~~~g-l~~~~-~~~~~~~~   73 (409)
                      |+..|||+|||||-||+-+|.+.+|.|.+++|+-.+... ...+|.-.+...+    .+..+.|| +.... +..+..+.
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r   80 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR   80 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence            566799999999999999999999999999999866431 2233332222211    12233332 11111 11111111


Q ss_pred             ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCC--eEEEEecCCcE
Q 015303           74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGH--FKLLHLADGTI  148 (409)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~--~v~v~~~~g~~  148 (409)
                         +.+...|..+..            .-..++|....+.+.+.+   ++..++.+ .|.++..+++  .+.|.+.+|..
T Consensus        81 ---~LN~sKGPAVra------------~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~  144 (621)
T COG0445          81 ---MLNSSKGPAVRA------------PRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPE  144 (621)
T ss_pred             ---hccCCCcchhcc------------hhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCe
Confidence               111111111000            011244444444444433   46677665 4555555443  36788899999


Q ss_pred             EeccEEEecCCCc
Q 015303          149 LKTKVLIGCDGVN  161 (409)
Q Consensus       149 ~~ad~vV~AdG~~  161 (409)
                      +.|+.||.++|-.
T Consensus       145 ~~a~aVVlTTGTF  157 (621)
T COG0445         145 FHAKAVVLTTGTF  157 (621)
T ss_pred             eecCEEEEeeccc
Confidence            9999999999975

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.51  E-value=1.1e-07  Score=91.66  Aligned_cols=53  Identities=21%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCC
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..+.+.|.+.+  .|++|+++++|++|..++++ ++++..+++.+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            44555565544  37999999999999988764 7888888877899999988776

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.50  E-value=7.1e-07  Score=82.32  Aligned_cols=152  Identities=19%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc------ccceecccc-HH--HHHHHc----Cc-----------
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT------GFAFTVWTN-AW--KALDAV----GI-----------   61 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~-~~--~~l~~~----gl-----------   61 (409)
                      ||+|||+|+|||++|+.|++. ++|+|+-|.+.....      |-+..+.+. +.  -..+.+    |+           
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 999999998754211      111112221 00  000111    11           


Q ss_pred             -----hhHHHhccccccceeeeecCCCCcccccccccccccCCccce---eccHHHHHHHHHhhC---CCceEEeCCeEE
Q 015303           62 -----GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMR---CVRRKLLLETLAKEL---PSGTIRYSSQVV  130 (409)
Q Consensus        62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~r~~l~~~L~~~~---~~~~i~~~~~v~  130 (409)
                           .+.+...+.+++.-     ..+    .+.+.-.+-+...-..   --.-..+.+.|.+.+   ++++++.++.+.
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~-----~~g----~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~  158 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRD-----EDG----RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEAL  158 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCC-----CCC----ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence                 11222223222211     111    0111111100000000   012256667776665   589999999999


Q ss_pred             EEEEeCC-eE-EEEe--cCC--cEEeccEEEecCCCchHHHhh
Q 015303          131 SIEESGH-FK-LLHL--ADG--TILKTKVLIGCDGVNSIVAKW  167 (409)
Q Consensus       131 ~i~~~~~-~v-~v~~--~~g--~~~~ad~vV~AdG~~S~vr~~  167 (409)
                      ++..+++ .+ -+.+  .++  .++.++.||.|+|.-+.+-+.
T Consensus       159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~  201 (518)
T COG0029         159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY  201 (518)
T ss_pred             hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence            9887776 33 3333  323  368899999999988765433

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.49  E-value=3e-07  Score=90.60  Aligned_cols=37  Identities=30%  Similarity=0.532  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.+++.|.+|+|+||.+..
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            4689999999999999999999999999999998754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.49  E-value=3.6e-07  Score=94.30  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~  340 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD  340 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence            46999999999999999999999999999998754

>PLN02546 glutathione reductase

Probab=98.49  E-value=6e-07  Score=87.63  Aligned_cols=32  Identities=28%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.48  E-value=9.3e-06  Score=76.37  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             eeccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          103 RCVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..++...+...|.+.+. +++++++++|++++.+++.+.|++.+|.+++||.||.|+|.++.
T Consensus       130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            35677888888887664 68999999999999888889999988888999999999999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.47  E-value=8.7e-07  Score=85.30  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+||||||+|+++|..|++.|.+|+|+|++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            899999999999999999999999999998753

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.46  E-value=2.4e-06  Score=84.18  Aligned_cols=34  Identities=24%  Similarity=0.539  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHH----HcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLY----RLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~----~~g~~V~v~E~~~~~   39 (409)
                      ||+|||||.|||++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998653

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07208 hypothetical protein; Provisional

Probab=98.46  E-value=2.2e-07  Score=90.16  Aligned_cols=39  Identities=38%  Similarity=0.589  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ||++.||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~   39 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV   39 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            788899999999999999999999999999999998754

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.46  E-value=1.1e-06  Score=86.73  Aligned_cols=36  Identities=28%  Similarity=0.545  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            579999999999999999999999999999997653

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.46  E-value=3e-06  Score=77.32  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=38.7

Q ss_pred             CceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303          120 SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      +++++|+++|.+|+..++. ..+.+.+|.++.+|.||.|-|+.+.
T Consensus       187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            6899999999999988764 6778889989999999999997663

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.45  E-value=1.3e-06  Score=86.51  Aligned_cols=33  Identities=18%  Similarity=0.514  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|.++|..+++.|.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999975

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.44  E-value=1.2e-06  Score=75.88  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCc---------ccceeccccHHHHH---HHcC-chhHHHh
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVT---------GFAFTVWTNAWKAL---DAVG-IGNSLRQ   67 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~---------~~~~~~~~~~~~~l---~~~g-l~~~~~~   67 (409)
                      .+||++|||||++|++.|..|.-+  +.+|.|+|+......+         ..|+.+.|.+++.=   +-.. +.+...+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e  126 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE  126 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence            469999999999999999999766  8999999998754211         13555666554320   0000 1111111


Q ss_pred             ccccc------------------------------cceeeeecCCCCcccccc--cccccccCCccceeccHHHHHHHHH
Q 015303           68 QHQQL------------------------------RSIVATPTISGKPSSERS--LKVQGKYGEHEMRCVRRKLLLETLA  115 (409)
Q Consensus        68 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~L~  115 (409)
                      ...+.                              .++.+....   .+.++.  ......-..+...+++-..+...+.
T Consensus       127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~---ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~  203 (453)
T KOG2665|consen  127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGS---EIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG  203 (453)
T ss_pred             cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccc---hhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence            11111                              122221110   000000  0000000011122344445544444


Q ss_pred             hhC--CCceEEeCCeEEEEEEeCCe-----EEEEecCCcEEeccEEEecCCCchHH
Q 015303          116 KEL--PSGTIRYSSQVVSIEESGHF-----KLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~i~~~~~~-----v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                      +.+  .+.++..+-++..+.+..+.     ++|.-..+++++++++|.|+|..|--
T Consensus       204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr  259 (453)
T KOG2665|consen  204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR  259 (453)
T ss_pred             HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence            433  26789999999999876542     44544456789999999999987754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.42  E-value=1.3e-06  Score=89.20  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            36899999999999999999999999999998865

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.42  E-value=2.9e-06  Score=88.09  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=98.42  E-value=7.1e-07  Score=85.58  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+|||+||+|..+|.  ++.|.+|+|+|++.
T Consensus         1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            3699999999999988864  45799999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.41  E-value=2.1e-06  Score=75.47  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=38.8

Q ss_pred             ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303          121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       121 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr  165 (409)
                      .+|..++.|+.|..-.+++.++..+|++-++|-+|.|+-..-.++
T Consensus       232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~  276 (447)
T COG2907         232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA  276 (447)
T ss_pred             ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH
Confidence            358899999999999999999999999889999999987665443

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.40  E-value=4e-06  Score=80.98  Aligned_cols=99  Identities=21%  Similarity=0.328  Sum_probs=75.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                    
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  217 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------LDDE--------------------  217 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------CCHH--------------------
Confidence            58999999999999999999999999999987532100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           .+..+.+.|.+.  +++++.+++|+.++.+++.+.+++.+++++++|.||.|+|.....
T Consensus       218 ---------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        218 ---------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             ---------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence                                 012344444433  799999999999987777788888888889999999999987654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.39  E-value=3.4e-06  Score=79.19  Aligned_cols=107  Identities=14%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||+||+.+|..|++.+  .+|+|+++++........               +...+             .  .
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~-------------~--~   52 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF-------------S--Q   52 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH-------------h--C
Confidence            49999999999999999998854  589999988753221100               00000             0  0


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      +.....                +.+... +.+.+.. +++++.+++|++++.+...  +++ ++.++.+|.||.|+|...
T Consensus        53 ~~~~~~----------------~~~~~~-~~~~~~~-gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         53 GQRADD----------------LTRQSA-GEFAEQF-NLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             CCCHHH----------------hhcCCH-HHHHHhC-CCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCCC
Confidence            000000                000001 1222222 7899999999999876553  333 556799999999999764

>PRK07846 mycothione reductase; Reviewed

Probab=98.38  E-value=8e-07  Score=85.17  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||++||||||+|..+|..  +.|.+|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988865  4699999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.38  E-value=3.1e-06  Score=88.62  Aligned_cols=35  Identities=34%  Similarity=0.595  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~  197 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE  197 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            57999999999999999999999999999999866

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.38  E-value=3e-06  Score=81.82  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.37  E-value=5.8e-06  Score=79.83  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=74.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+.+.                  +..++                   
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~~-------------------  215 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------EDKEI-------------------  215 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------CCHHH-------------------
Confidence            47999999999999999999999999999987542100                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                                            ...+.+.|.+.  +++++.+++|+.++.+++.+.+.+.++   +++.+|.||.|.|..
T Consensus       216 ----------------------~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~  271 (462)
T PRK06416        216 ----------------------SKLAERALKKR--GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR  271 (462)
T ss_pred             ----------------------HHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence                                  12334444433  799999999999988777787877665   579999999999976


Q ss_pred             hHH
Q 015303          162 SIV  164 (409)
Q Consensus       162 S~v  164 (409)
                      ...
T Consensus       272 p~~  274 (462)
T PRK06416        272 PNT  274 (462)
T ss_pred             cCC
Confidence            543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.34  E-value=2.8e-06  Score=82.53  Aligned_cols=39  Identities=26%  Similarity=0.431  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ..++||+|||||.|||.+|+.+++.|++|+|+||....+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            356899999999999999999999999999999986543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.33  E-value=7.7e-06  Score=77.27  Aligned_cols=98  Identities=21%  Similarity=0.273  Sum_probs=72.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                . .                    .  
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-~--------------------~--  185 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N-A--------------------P--  185 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-c--------------------C--
Confidence            47999999999999999999999999999987531100                0 0                    0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                     .    .....+.+.+.+  .++++++++++++++. ++.+.+++.+|+++.||+||.|.|....
T Consensus       186 ---------------~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        186 ---------------P----PVQRYLLQRHQQ--AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             ---------------H----HHHHHHHHHHHH--CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence                           0    001123333433  2799999999999976 5567788889989999999999998654

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.30  E-value=7.6e-07  Score=85.15  Aligned_cols=37  Identities=30%  Similarity=0.660  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++.+|+|||||+|||+||..|.+.|++|+|+|.++.+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            3579999999999999999999999999999998864

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.29  E-value=3e-06  Score=72.45  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC------CceEEEeCCCCcC-Ccccceec-----cccHHHHHHHc------CchhH
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG------IRSMVLESSESLR-VTGFAFTV-----WTNAWKALDAV------GIGNS   64 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g------~~V~v~E~~~~~~-~~~~~~~~-----~~~~~~~l~~~------gl~~~   64 (409)
                      ...+|+|||||+.|.++|++|++++      +.|+++|+..... ..|.+.++     .+....-|..+      +|.++
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde   88 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE   88 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence            3468999999999999999999988      8899999876431 11111110     01001111111      22333


Q ss_pred             HHhc-cccccceeeeecC-------CCCccccccccccc-------ccCCccceeccHHHHHHHHHhhCC---CceEEeC
Q 015303           65 LRQQ-HQQLRSIVATPTI-------SGKPSSERSLKVQG-------KYGEHEMRCVRRKLLLETLAKELP---SGTIRYS  126 (409)
Q Consensus        65 ~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~  126 (409)
                      +... ...++....+...       .++....+++-...       ........+++...|...+++++.   ++++.++
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G  168 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG  168 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence            3221 1111111111100       01111111111100       011223346888999999988773   4788887


Q ss_pred             CeEEEEEEeCCeEE-EEec---C-CcEEeccEEEecCCCchH
Q 015303          127 SQVVSIEESGHFKL-LHLA---D-GTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       127 ~~v~~i~~~~~~v~-v~~~---~-g~~~~ad~vV~AdG~~S~  163 (409)
                       +|..+..+.+++. +...   + ......+.+|.+.|.|+.
T Consensus       169 -kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  169 -KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             -eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence             4666653333321 1111   1 224678899999999974

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.29  E-value=3.2e-06  Score=75.24  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=34.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|||+||||||.|-.+|+..++.|++.+.+|++...
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L   74 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL   74 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence            589999999999999999999999999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.28  E-value=5.2e-06  Score=84.99  Aligned_cols=109  Identities=16%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccccee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV   76 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      |+ +.+|+|||+|+||+.+|..|.++    +++|+||++.+.+.....               .+...+.          
T Consensus         1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~---------------~L~~~~~----------   54 (847)
T PRK14989          1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV---------------HLSSYFS----------   54 (847)
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC---------------cchHhHc----------
Confidence            54 35999999999999999999764    479999999877432211               1111110          


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                            +.....+.              +..   .+++.+  .+++++.+++|+.++.+..  .|++.+|.++.+|.||.
T Consensus        55 ------~~~~~~l~--------------~~~---~~~~~~--~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVI  107 (847)
T PRK14989         55 ------HHTAEELS--------------LVR---EGFYEK--HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIM  107 (847)
T ss_pred             ------CCCHHHcc--------------CCC---HHHHHh--CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEE
Confidence                  00000000              000   122222  3789999999999977543  56677888899999999


Q ss_pred             cCCCch
Q 015303          157 CDGVNS  162 (409)
Q Consensus       157 AdG~~S  162 (409)
                      |+|...
T Consensus       108 ATGs~p  113 (847)
T PRK14989        108 ATGSYP  113 (847)
T ss_pred             CCCCCc
Confidence            999754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.28  E-value=7.1e-06  Score=78.16  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|||||||.||+.+|..|.+.+.+|+|||+++.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            356999999999999999999877899999998764

>PRK07846 mycothione reductase; Reviewed

Probab=98.28  E-value=1.3e-05  Score=76.91  Aligned_cols=98  Identities=27%  Similarity=0.373  Sum_probs=73.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +..+                    
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~--------------------  208 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDD--------------------  208 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999986531000                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                          + +..+.+ +.+  .+++++.++++++++.+++.+.+++.+++++.+|.||.|+|.....
T Consensus       209 --------------------~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        209 --------------------I-SERFTE-LAS--KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             --------------------H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence                                0 112222 222  2689999999999987777788888888899999999999986543

>PRK06116 glutathione reductase; Validated

Probab=98.27  E-value=1.2e-05  Score=77.38  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=74.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                  ...+                    
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~--------------------  209 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FDPD--------------------  209 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cCHH--------------------
Confidence            58999999999999999999999999999987542100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           .+..+.+.|.+  .+++++++++|++++.++++ +.+++.+|+++.+|.||.|.|....
T Consensus       210 ---------------------~~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        210 ---------------------IRETLVEEMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             ---------------------HHHHHHHHHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence                                 01233444443  27999999999999876554 7788888888999999999997654


Q ss_pred             H
Q 015303          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       267 ~  267 (450)
T PRK06116        267 T  267 (450)
T ss_pred             C
Confidence            3

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.26  E-value=1.8e-06  Score=88.17  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            46999999999999999999999999999998644

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.26  E-value=5.1e-06  Score=77.63  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             cEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +|+|||||+||+.+|..|+++   +.+|+|||+++.......                +. .+..      +  .   ..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~----------------~~-~~~~------g--~---~~   52 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM----------------LP-GMIA------G--H---YS   52 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch----------------hh-HHHh------e--e---CC
Confidence            489999999999999999643   689999998765221110                00 0000      0  0   00


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      .   ..+              ..   .+.+.+.+  .+++++.+ +|++++.++.  +|.+.+|+++++|+||.|+|...
T Consensus        53 ~---~~~--------------~~---~~~~~~~~--~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        53 L---DEI--------------RI---DLRRLARQ--AGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             H---HHh--------------cc---cHHHHHHh--cCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence            0   000              00   11122221  26787765 7999987765  56677888899999999999764


Q ss_pred             H
Q 015303          163 I  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       108 ~  108 (364)
T TIGR03169       108 P  108 (364)
T ss_pred             C
Confidence            3

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.25  E-value=2.1e-05  Score=68.93  Aligned_cols=35  Identities=34%  Similarity=0.661  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+|||+|+|||.+|..|+.+|.+|+|+|+...
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            58999999999999999999999999999998764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.25  E-value=1.4e-05  Score=76.99  Aligned_cols=99  Identities=20%  Similarity=0.321  Sum_probs=75.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||..|+-+|..|++.|.+|+++++.+.+....                  ..+                    
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------d~~--------------------  219 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE------------------DAD--------------------  219 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC------------------CHH--------------------
Confidence            479999999999999999999999999999765421100                  000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           .+..+.+.|.+.  +++++.+++++.++.+++++.+.+.+|+++.+|.||.|.|.....
T Consensus       220 ---------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        220 ---------------------AAEVLEEVFARR--GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             ---------------------HHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence                                 012334444433  799999999999987777788888888889999999999986554

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.2e-06  Score=81.76  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV   41 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      ++|+|+|||+|||++|+.|+++|++|+|+|+++.+..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            3799999999999999999999999999999987543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=6.2e-06  Score=72.45  Aligned_cols=108  Identities=27%  Similarity=0.409  Sum_probs=70.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEE-eCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVL-ESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .|||+||||||||.++|++.+|+|++.-|+ ||-      | |        +.|+.+++..-          +.+-  . 
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf------G-G--------QvldT~~IENf----------Isv~--~-  262 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF------G-G--------QVLDTMGIENF----------ISVP--E-  262 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh------C-C--------eeccccchhhe----------eccc--c-
Confidence            599999999999999999999999875443 221      1 0        22223322110          0000  0 


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEe---CCeEEEEecCCcEEeccEEEec
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES---GHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~---~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                                            ..-.+|...|.+..+  ++++....+.++++..   ++-.+|++.+|-.++++-||.+
T Consensus       263 ----------------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIls  320 (520)
T COG3634         263 ----------------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILA  320 (520)
T ss_pred             ----------------------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEe
Confidence                                  111344555555443  4666666667777664   4568999999999999999999


Q ss_pred             CCCc
Q 015303          158 DGVN  161 (409)
Q Consensus       158 dG~~  161 (409)
                      +|+.
T Consensus       321 tGAr  324 (520)
T COG3634         321 TGAR  324 (520)
T ss_pred             cCcc
Confidence            9963

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.19  E-value=3.2e-05  Score=73.16  Aligned_cols=99  Identities=23%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +..++|||||+.|+=.|..+++.|.+|+|+|+.+.+-+.                  ..+++                  
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~ei------------------  216 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDPEI------------------  216 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCHHH------------------
Confidence            347999999999999999999999999999988662221                  00000                  


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc--EEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~--~~~ad~vV~AdG~~  161 (409)
                                             +..+.+.|.+  .+++++.+++++.++..++++.+++++++  ++++|.|+.|.|+.
T Consensus       217 -----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         217 -----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             -----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence                                   1234455544  47899999999999988877888888876  78999999999965


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       272 Pn  273 (454)
T COG1249         272 PN  273 (454)
T ss_pred             cC
Confidence            43

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.19  E-value=9e-06  Score=83.14  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             EEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      |+|||||+||+.+|..|.+.   +++|+|||+.+.+.....               .+.. +.. +           .. 
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l~-g-----------~~-   51 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VLQ-G-----------EA-   51 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HHC-C-----------CC-
Confidence            68999999999999998775   479999998876432111               0110 000 0           00 


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                       ....+.+              ..   .+++.+  .+++++.+++|+.|+.+..  .|++.+|.++.+|.||.|+|...
T Consensus        52 -~~~~l~~--------------~~---~~~~~~--~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        52 -DLDDITL--------------NS---KDWYEK--HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             -CHHHccC--------------CC---HHHHHH--CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence             0000000              00   122222  3799999999999987654  56677888899999999999754

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.18  E-value=2.4e-06  Score=74.53  Aligned_cols=36  Identities=36%  Similarity=0.602  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +++||+|||||+||+++|+.|.++|.++.|+-++..
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            369999999999999999999999999999998764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.18  E-value=2.2e-05  Score=75.26  Aligned_cols=97  Identities=19%  Similarity=0.252  Sum_probs=71.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~--------------------  199 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------EEPS--------------------  199 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------CCHH--------------------
Confidence            47999999999999999999999999999987542100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                          + +..+.+.|.+.  +++++.+++|+.++.+++.+.++. +++++.+|.||.|.|....
T Consensus       200 --------------------~-~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        200 --------------------V-AALAKQYMEED--GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             --------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence                                0 11233444332  789999999999987666666654 4567999999999997654

>PLN02507 glutathione reductase

Probab=98.17  E-value=3e-05  Score=75.26  Aligned_cols=99  Identities=10%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-..                  +..+                    
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~--------------------  245 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE--------------------  245 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH--------------------
Confidence            47999999999999999999999999999976431100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           .+..+.+.|.+.  +++++.+++|++++.+++++.+.+.+++++.+|.|+.|.|.....
T Consensus       246 ---------------------~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        246 ---------------------MRAVVARNLEGR--GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             ---------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence                                 012334445433  799999999999987777788888888889999999999976543

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.16  E-value=9.4e-05  Score=63.89  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-------CceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-------IRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-------~~V~v~E~~~~~~   40 (409)
                      ..+|+|||+|..||++|..+.+.+       .+|+|++.+..+.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~   46 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED   46 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence            469999999999999998888744       5799999876653

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=4.7e-06  Score=76.19  Aligned_cols=144  Identities=22%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccccHH----HHHHHcCchhHHHhccccccceee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWTNAW----KALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      .+|||+|||||-||+-+|.+.++.|-+.+|+-.+- .....+|.-.+..-+.    +..+.++   -+-.......++.+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd---Gl~~rvcD~s~vq~  103 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD---GLCSRVCDQSGVQY  103 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc---chHhhhhhhhhhhH
Confidence            46899999999999999999999999988887653 2233333333222111    1122221   11111111111111


Q ss_pred             e--ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCC-----eEEEEecCCc
Q 015303           78 T--PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGH-----FKLLHLADGT  147 (409)
Q Consensus        78 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~-----~v~v~~~~g~  147 (409)
                      .  +...|..  .          ...-..++|+.+...+.+++   ++..|+.+.-..-+..+++     ..-|.+.||.
T Consensus       104 k~LNrs~GPA--V----------wg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt  171 (679)
T KOG2311|consen  104 KVLNRSKGPA--V----------WGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGT  171 (679)
T ss_pred             HHhhccCCCc--c----------cChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCc
Confidence            1  1111111  0          01112577777777777665   4456665533333333332     2446678899


Q ss_pred             EEeccEEEecCCCc
Q 015303          148 ILKTKVLIGCDGVN  161 (409)
Q Consensus       148 ~~~ad~vV~AdG~~  161 (409)
                      .+.++-||..+|-+
T Consensus       172 ~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  172 VVYAESVILTTGTF  185 (679)
T ss_pred             EeccceEEEeeccc
Confidence            99999999999965

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.15  E-value=2.7e-05  Score=74.72  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+++.+.+...                  +.++                    
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~--------------------  208 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD--------------------  208 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH--------------------
Confidence            47999999999999999999999999999976442000                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                          + +..+.+.|.+.  +++++.+++|+.++.+++.+.+++.+++++.+|.||.|.|....
T Consensus       209 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       209 --------------------M-RALLARNMEGR--GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence                                0 12233444432  79999999999998777777788888888999999999997654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.14  E-value=2.8e-06  Score=78.45  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~   35 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH   35 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            6999999999999999999999999999999753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.13  E-value=2.8e-06  Score=82.76  Aligned_cols=35  Identities=40%  Similarity=0.600  Sum_probs=33.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999999999999999999754

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.12  E-value=4.4e-05  Score=73.29  Aligned_cols=99  Identities=23%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +..+                    
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d~~--------------------  208 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FDSM--------------------  208 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cCHH--------------------
Confidence            58999999999999999999999999999987441110                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCC-cEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADG-TILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-~~~~ad~vV~AdG~~S  162 (409)
                                           .+..+.+.|.+.  +++++.+++++.++.+++. +.+++.++ +.+.+|.||.|.|...
T Consensus       209 ---------------------~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       209 ---------------------ISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             ---------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence                                 012344455433  7899999999999876443 67777777 5799999999999765


Q ss_pred             HH
Q 015303          163 IV  164 (409)
Q Consensus       163 ~v  164 (409)
                      ..
T Consensus       266 n~  267 (450)
T TIGR01421       266 NT  267 (450)
T ss_pred             Cc
Confidence            54

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.11  E-value=5e-05  Score=73.38  Aligned_cols=99  Identities=23%  Similarity=0.297  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  ...+                    
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~~--------------------  214 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------EDAE--------------------  214 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------cCHH--------------------
Confidence            48999999999999999999999999999965431110                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec--CCc--EEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA--DGT--ILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~--~~~ad~vV~AdG~  160 (409)
                                          + +..+.+.|.+.  +++++.+++|+.++.+++.+.+++.  +|+  ++.+|.||.|.|.
T Consensus       215 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        215 --------------------V-SKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence                                0 12233445433  8999999999999877666666554  553  6999999999997


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       272 ~pn~  275 (466)
T PRK07818        272 APRV  275 (466)
T ss_pred             ccCC
Confidence            6543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.09  E-value=5.9e-05  Score=72.71  Aligned_cols=99  Identities=17%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                                   ..   .  
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----------------------------------~~---d--  210 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----------------------------------GE---D--  210 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----------------------------------cc---c--
Confidence            4799999999999999999999999999998754100                                   00   0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~S~  163 (409)
                                     ..   + +..+.+.|.+.  +++++++++|+.++.++..+.+...++ .++.+|.||.|+|....
T Consensus       211 ---------------~e---~-~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 ---------------ED---I-AHILREKLEND--GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             ---------------HH---H-HHHHHHHHHHC--CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence                           00   0 12344455433  899999999999987666555554322 36899999999997765


Q ss_pred             H
Q 015303          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      +
T Consensus       270 ~  270 (458)
T PRK06912        270 V  270 (458)
T ss_pred             C
Confidence            4

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.09  E-value=9.1e-06  Score=73.28  Aligned_cols=149  Identities=15%  Similarity=0.105  Sum_probs=92.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHH--HHHHHcCchhHHHhccccccceee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAW--KALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      |+..+|++.||-||.-|.+|+.|...+ +++..+||.+....++. ..+...++  .+++.|      ..-..|.....+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL------VTl~~PTs~ySF   74 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL------VTLVDPTSPYSF   74 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh------ccccCCCCchHH
Confidence            556799999999999999999999876 78999999999877753 32322111  112221      111111111111


Q ss_pred             eec-CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCC-ceEEeCCeEEEEEEeC-C-eEE--EEecCCcEEec
Q 015303           78 TPT-ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESG-H-FKL--LHLADGTILKT  151 (409)
Q Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~-~-~v~--v~~~~g~~~~a  151 (409)
                      .+. ....++..+        .......+.|.++.+++.-.+.. -.++|+.+|++|...+ + ...  +.+.++++++|
T Consensus        75 LNYL~~h~RLy~F--------l~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~a  146 (436)
T COG3486          75 LNYLHEHGRLYEF--------LNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRA  146 (436)
T ss_pred             HHHHHHcchHhhh--------hhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEe
Confidence            110 000111111        12334468898888888765533 4788999999774332 2 233  66677778999


Q ss_pred             cEEEecCCCchHH
Q 015303          152 KVLIGCDGVNSIV  164 (409)
Q Consensus       152 d~vV~AdG~~S~v  164 (409)
                      +-||...|..-.+
T Consensus       147 r~lVlg~G~~P~I  159 (436)
T COG3486         147 RNLVLGVGTQPYI  159 (436)
T ss_pred             eeEEEccCCCcCC
Confidence            9999999976544

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.09  E-value=3.6e-05  Score=71.08  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.+|||||||.+|+.+|..|.+.-  .+|+|+|++..-...+           .     +. ++               .
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------l-----L~-ev---------------a   50 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------L-----LY-EV---------------A   50 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------h-----hh-hh---------------h
Confidence            459999999999999999999974  8999999987622111           0     00 00               0


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+..    +..         ...   ..+...+ +...++++..+ +|++|+.++..  |++.++..+.+|++|.|.|..
T Consensus        51 ~g~l----~~~---------~i~---~p~~~~~-~~~~~v~~~~~-~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~  110 (405)
T COG1252          51 TGTL----SES---------EIA---IPLRALL-RKSGNVQFVQG-EVTDIDRDAKK--VTLADLGEISYDYLVVALGSE  110 (405)
T ss_pred             cCCC----Chh---------hee---ccHHHHh-cccCceEEEEE-EEEEEcccCCE--EEeCCCccccccEEEEecCCc
Confidence            1000    000         000   0122222 22224666654 79999888774  555666679999999999986


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       111 ~~  112 (405)
T COG1252         111 TN  112 (405)
T ss_pred             CC
Confidence            54

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.09  E-value=3.7e-06  Score=86.39  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            369999999999999999999999999999998653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06370 mercuric reductase; Validated

Probab=98.08  E-value=4.8e-05  Score=73.45  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~~~~--------------------  213 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------EDED--------------------  213 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------cCHH--------------------
Confidence            58999999999999999999999999999987542100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe--cC-CcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL--AD-GTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~--~~-g~~~~ad~vV~AdG~~  161 (409)
                                          + +..+.+.|.+  .+++++++++|+.++.+++.+.+.+  .+ +.++.+|.||.|.|..
T Consensus       214 --------------------~-~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        214 --------------------V-AAAVREILER--EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             --------------------H-HHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence                                0 1223344433  3799999999999988766655444  23 3479999999999976


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       271 pn  272 (463)
T PRK06370        271 PN  272 (463)
T ss_pred             cC
Confidence            54

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.07  E-value=3.5e-05  Score=73.63  Aligned_cols=97  Identities=23%  Similarity=0.358  Sum_probs=70.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                                  .       
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------------------------------~-------  176 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------------------------------L-------  176 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------------------------------c-------
Confidence            48999999999999999999999999999987542000                                  0       


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                          ++         ..   + +..+.+.|.+.  +++++++++|+.++.++. + +.+.+|+++.+|.||.|+|....
T Consensus       177 ----~~---------~~---~-~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       177 ----FD---------EE---M-NQIVEEELKKH--EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             ----cC---------HH---H-HHHHHHHHHHc--CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence                00         00   0 12334444432  789999999999976543 3 55677888999999999998643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.06  E-value=5.7e-05  Score=73.14  Aligned_cols=98  Identities=20%  Similarity=0.291  Sum_probs=69.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                                   .   .  
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-----------------------------------~---~--  220 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-----------------------------------E---D--  220 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----------------------------------C---C--
Confidence            58999999999999999999999999999987542000                                   0   0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEE--eCCeEEEEecCCc--EEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE--SGHFKLLHLADGT--ILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~--~~~ad~vV~AdG~  160 (409)
                                     .   .+ ...+.+.|.+.  +++++.+++|+.++.  .++...+.+.+|+  ++.+|.||.|.|.
T Consensus       221 ---------------~---~~-~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~  279 (472)
T PRK05976        221 ---------------A---EL-SKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR  279 (472)
T ss_pred             ---------------H---HH-HHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence                           0   00 12233444332  799999999999975  3333334455663  6899999999997


Q ss_pred             chH
Q 015303          161 NSI  163 (409)
Q Consensus       161 ~S~  163 (409)
                      ...
T Consensus       280 ~p~  282 (472)
T PRK05976        280 RPN  282 (472)
T ss_pred             ccC
Confidence            654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.06  E-value=1.7e-05  Score=69.02  Aligned_cols=34  Identities=32%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .|+|||+|+|||+++..+...|-.|+++|+....
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence            6999999999999999999988779999998754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.05  E-value=6.9e-05  Score=72.57  Aligned_cols=99  Identities=22%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  225 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------ADEQ--------------------  225 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------CCHH--------------------
Confidence            58999999999999999999999999999987531100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC--C--cEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD--G--TILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~--g--~~~~ad~vV~AdG~  160 (409)
                                          + +..+.+.|.+  .+++++.+++|+.++.+++.+.+.+.+  |  .++.+|.||.|.|.
T Consensus       226 --------------------~-~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~  282 (475)
T PRK06327        226 --------------------V-AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR  282 (475)
T ss_pred             --------------------H-HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence                                0 1223334433  379999999999998877777776654  3  36899999999997


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       283 ~p~~  286 (475)
T PRK06327        283 VPNT  286 (475)
T ss_pred             ccCC
Confidence            6553

>TIGR02053 MerA mercuric reductase

Probab=98.05  E-value=5.8e-05  Score=72.93  Aligned_cols=98  Identities=20%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                  ...+                    
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  208 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------EEPE--------------------  208 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------cCHH--------------------
Confidence            58999999999999999999999999999987542100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---CcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---GTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~~~~ad~vV~AdG~~  161 (409)
                                          + +..+.+.|.+  .+++++++++|+.++.+++.+.+++.+   ++++.+|.||.|.|..
T Consensus       209 --------------------~-~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~  265 (463)
T TIGR02053       209 --------------------I-SAAVEEALAE--EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR  265 (463)
T ss_pred             --------------------H-HHHHHHHHHH--cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence                                0 1223344433  279999999999998776665555532   3579999999999975


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       266 p~  267 (463)
T TIGR02053       266 PN  267 (463)
T ss_pred             cC
Confidence            54

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.02  E-value=6.9e-05  Score=72.32  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=70.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                                   .   .  
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----------------------------------~---d--  214 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----------------------------------T---D--  214 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------C---C--
Confidence            58999999999999999999999999999986442000                                   0   0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---C--CcEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---D--GTILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~--g~~~~ad~vV~AdG  159 (409)
                            .             -.+..+.+.|.+.  +++++.+++|+.++.+++.+.+++.   +  ++++.+|.||.|.|
T Consensus       215 ------~-------------~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G  273 (466)
T PRK06115        215 ------T-------------ETAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG  273 (466)
T ss_pred             ------H-------------HHHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence                  0             0012233444432  7999999999999876666655543   2  24799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ....
T Consensus       274 ~~pn  277 (466)
T PRK06115        274 RRPY  277 (466)
T ss_pred             Cccc
Confidence            7644

>TIGR03452 mycothione_red mycothione reductase

Probab=98.02  E-value=8.5e-05  Score=71.37  Aligned_cols=97  Identities=26%  Similarity=0.348  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..++                   
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~-------------------  212 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------LDEDI-------------------  212 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------cCHHH-------------------
Confidence            48999999999999999999999999999976431000                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                            +..+.+.+ +  .+++++.+++|+.++.+++.+.+++.+|+++.+|.|+.|.|....
T Consensus       213 ----------------------~~~l~~~~-~--~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       213 ----------------------SDRFTEIA-K--KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             ----------------------HHHHHHHH-h--cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence                                  01222222 2  268999999999998777778888888888999999999997543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.02  E-value=6.4e-06  Score=78.69  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHH--cCCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR--LGIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~--~g~~V~v~E~~~~~~   40 (409)
                      ..+|+||||||||+.+|..|++  .|++|+|||+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4689999999999999999997  799999999998653

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.02  E-value=0.00033  Score=64.64  Aligned_cols=61  Identities=21%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                      ..++...+...|.+.+  .+++++++++|++++.+++.+. |.+.+| +++||.||.|+|+++..
T Consensus       132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            3567788888887765  3789999999999998877654 566666 79999999999998853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.01  E-value=6.6e-06  Score=79.06  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~  174 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE  174 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            47999999999999999999999999999998765

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.01  E-value=5.6e-06  Score=74.97  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      ||+||||+|++|+.+|..|++.| .+|+|+|++..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            79999999999999999999997 79999999874

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=5.2e-05  Score=62.60  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=72.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+.+|+|||.|||+-++|+++++..++-+|+|-.-... .+-|..++.                     ...+       
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQLtT---------------------TT~v-------   57 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQLTT---------------------TTDV-------   57 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCceeee---------------------eecc-------
Confidence            44599999999999999999999999999999432210 000000000                     0000       


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                            -+|+..     +.  .+.-.+|.+.+++...  +.+|+. ..|.+++....-+.+.++. ..+.||.||.|+|+
T Consensus        58 ------eNfPGF-----Pd--gi~G~~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~-~~v~~~avI~atGA  122 (322)
T KOG0404|consen   58 ------ENFPGF-----PD--GITGPELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDA-RPVTADAVILATGA  122 (322)
T ss_pred             ------ccCCCC-----Cc--ccccHHHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEecC-CceeeeeEEEeccc
Confidence                  111111     11  3555778888877652  344544 3577777777667776644 45999999999996


Q ss_pred             c
Q 015303          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       123 s  123 (322)
T KOG0404|consen  123 S  123 (322)
T ss_pred             c
Confidence            4

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.99  E-value=4.3e-05  Score=78.30  Aligned_cols=98  Identities=20%  Similarity=0.408  Sum_probs=72.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..               .  +                 +.    
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--l-----------------d~----  182 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--L-----------------DQ----  182 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--c-----------------CH----
Confidence            47999999999999999999999999999976431000               0  0                 00    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                                          .....+.+.|.+.  +++++.++.++.+..++....|++.+|+++.+|+||.|.|...
T Consensus       183 --------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       183 --------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             --------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence                                0012333444333  7899999999998766555678888999999999999999764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.98  E-value=8.8e-06  Score=74.70  Aligned_cols=35  Identities=29%  Similarity=0.707  Sum_probs=33.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+++|||||+||+++|+.|++.|++|.|+||++..
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi  159 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI  159 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            58999999999999999999999999999999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.96  E-value=0.00014  Score=69.73  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-+.                  ...+                    
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~--------------------  200 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------EDRD--------------------  200 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------cCHH--------------------
Confidence            47999999999999999999999999999986431100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                          + ...+.+.|.+.  +++++++++|++++.+++.+.+...++ ++.+|.||.|.|.....
T Consensus       201 --------------------~-~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        201 --------------------I-ADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                                0 11234444433  799999999999988777777776665 48999999999987643

>PRK02106 choline dehydrogenase; Validated

Probab=97.96  E-value=8.6e-06  Score=80.45  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHH-cCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~   37 (409)
                      |+..||+||||+|++|+.+|..|++ .|++|+|||+++
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            3456899999999999999999999 899999999985

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.95  E-value=1e-05  Score=76.00  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999874

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.94  E-value=1.4e-05  Score=69.75  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=33.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|++|||||++|+.+|..|++.|.+|+|+||++..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI   36 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI   36 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence            79999999999999999999999999999998754

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.93  E-value=9.4e-06  Score=82.20  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            4699999999999999999999999999999863

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.93  E-value=0.00015  Score=70.11  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..+                    
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d~~--------------------  216 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------ADKD--------------------  216 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CCHH--------------------
Confidence            48999999999999999999999999999987541000                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~vV~AdG~  160 (409)
                                          + +..+.+.|.+.   ++++.+++|+.++..++.+.+++.++    .++.+|.||.|.|.
T Consensus       217 --------------------~-~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~  272 (471)
T PRK06467        217 --------------------I-VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR  272 (471)
T ss_pred             --------------------H-HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence                                0 12233334332   78889999999987777777766542    36999999999998


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       273 ~pn~  276 (471)
T PRK06467        273 VPNG  276 (471)
T ss_pred             cccC
Confidence            7654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.92  E-value=1.3e-05  Score=76.79  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            479999999999999999999999999999997653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.90  E-value=0.00014  Score=74.67  Aligned_cols=99  Identities=21%  Similarity=0.329  Sum_probs=72.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ..++|||||+.|+-+|..|++.|.+|+|+|+.+..-..                     .             .+.    
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------------~-------------ld~----  187 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------------Q-------------LDQ----  187 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------------h-------------cCH----
Confidence            47999999999999999999999999999976431000                     0             000    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                                          -....+.+.|.+.  +++++.++.++.|..++  ....+++.+|+++.+|+||.|.|...
T Consensus       188 --------------------~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        188 --------------------MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             --------------------HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence                                0012344444433  89999999999997643  34567888999999999999999865


Q ss_pred             H
Q 015303          163 I  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       246 n  246 (847)
T PRK14989        246 Q  246 (847)
T ss_pred             C
Confidence            4

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.89  E-value=0.00013  Score=69.91  Aligned_cols=93  Identities=18%  Similarity=0.367  Sum_probs=68.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.....                  +..+                    
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~--------------------  190 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD--------------------  190 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH--------------------
Confidence            47999999999999999999999999999987541100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                                          + ...+.+.|.+.  +++++.+++|+.++.  .  .+++.+++++.+|.|+.|.|...
T Consensus       191 --------------------~-~~~l~~~l~~~--gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        191 --------------------M-NQPILDELDKR--EIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             --------------------H-HHHHHHHHHhc--CCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCc
Confidence                                0 12334444432  789999999999863  2  45667788899999999999764

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.89  E-value=0.00017  Score=70.12  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++... -..                  +..+                    
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~------------------~d~~--------------------  223 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG------------------FDRQ--------------------  223 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc------------------CCHH--------------------
Confidence            4799999999999999999999999999985311 000                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           ....+.+.|.+.  +++++.++.++.++..++.+.+.+.+|+++.+|.|+.|.|.....
T Consensus       224 ---------------------~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        224 ---------------------CSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             ---------------------HHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence                                 012233444332  789999999999887666677778888889999999999986554

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.89  E-value=1.6e-05  Score=74.96  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHH-HHcCCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGL-YRLGIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L-~~~g~~V~v~E~~~~~~   40 (409)
                      ..+|+||||||||+.+|..| ++.|++|+|+|+.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            46899999999999999976 46799999999998764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.89  E-value=0.00018  Score=69.50  Aligned_cols=99  Identities=14%  Similarity=0.137  Sum_probs=70.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||+.|+-+|..++..   |.+|+|+|+.+.+-+.                  +..+                 
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~------------------~d~~-----------------  232 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG------------------FDST-----------------  232 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc------------------cCHH-----------------
Confidence            5799999999999999877654   8999999977541100                  0000                 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                             + +..+.+.|.+  .+++++.+++++.+..+++. ..+++.+++++.+|.||.|.|.
T Consensus       233 -----------------------~-~~~l~~~L~~--~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~  286 (486)
T TIGR01423       233 -----------------------L-RKELTKQLRA--NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR  286 (486)
T ss_pred             -----------------------H-HHHHHHHHHH--cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence                                   0 1234444543  37899999999999865443 5677777888999999999997


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       287 ~Pn~  290 (486)
T TIGR01423       287 VPRT  290 (486)
T ss_pred             CcCc
Confidence            6554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.89  E-value=6.8e-05  Score=68.82  Aligned_cols=131  Identities=16%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcc----cceeccccHHHHHHHcCchhHHHhccccccceee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTG----FAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ...|+|||||.++.-++..|.+++-  +|+++=|+.......    ....+.|...+.+..+.  ++.+.........  
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~--~~~R~~~l~~~~~--  265 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP--DEERRELLREQRH--  265 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHHTGG--
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC--HHHHHHHHHHhHh--
Confidence            4689999999999999999999875  899999987653221    12345665555555542  2221111100000  


Q ss_pred             eecCCCCcccccccccccccCCccceeccHHHH---HHHHHhh----CCCceEEeCCeEEEEEEeCC-eEEEEecCC---
Q 015303           78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLL---LETLAKE----LPSGTIRYSSQVVSIEESGH-FKLLHLADG---  146 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~L~~~----~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g---  146 (409)
                                 .           .+-.|+...+   -+.+++.    -..+++..+++|++++..++ ++.+++.+.   
T Consensus       266 -----------~-----------ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~  323 (341)
T PF13434_consen  266 -----------T-----------NYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTG  323 (341)
T ss_dssp             -----------G-----------TSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT-
T ss_pred             -----------h-----------cCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCC
Confidence                       0           0001222211   1222211    12478999999999999884 899988862   


Q ss_pred             --cEEeccEEEecCCC
Q 015303          147 --TILKTKVLIGCDGV  160 (409)
Q Consensus       147 --~~~~ad~vV~AdG~  160 (409)
                        .++++|+||.|||.
T Consensus       324 ~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  324 EEETLEVDAVILATGY  339 (341)
T ss_dssp             -EEEEEESEEEE---E
T ss_pred             CeEEEecCEEEEcCCc
Confidence              37899999999995

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.88  E-value=0.00021  Score=68.77  Aligned_cols=97  Identities=20%  Similarity=0.280  Sum_probs=67.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.....                                  .+      
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------~~------  189 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------------------------------SF------  189 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------------------------------hc------
Confidence            57999999999999999999999999999876431000                                  00      


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                             +       ..   + ...+.+.|.+  .+++++++++|+++..++....+.+. +.++.||+||.|.|...
T Consensus       190 -------~-------~~---~-~~~l~~~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p  246 (444)
T PRK09564        190 -------D-------KE---I-TDVMEEELRE--NGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKP  246 (444)
T ss_pred             -------C-------HH---H-HHHHHHHHHH--CCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCc
Confidence                   0       00   0 1233344433  27899999999999654443444444 44699999999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=97.87  E-value=0.00022  Score=68.98  Aligned_cols=97  Identities=22%  Similarity=0.321  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+|+++......                   ...+                    
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~~~--------------------  219 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------EDPA--------------------  219 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CCHH--------------------
Confidence            4799999999999999999999999999986311000                   0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                          + ...+.+.|.+.  +++++.+++++.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus       220 --------------------~-~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        220 --------------------V-GEAIEAAFRRE--GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence                                0 12334444432  799999999999987776666666554 69999999999987654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.87  E-value=1.7e-05  Score=79.72  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            469999999999999999999999999999998654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.86  E-value=1.6e-05  Score=83.00  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            469999999999999999999999999999998654

>PRK14727 putative mercuric reductase; Provisional

Probab=97.86  E-value=0.00022  Score=69.16  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++......                   ...++                   
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d~~~-------------------  230 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR-------------------EDPLL-------------------  230 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc-------------------chHHH-------------------
Confidence            4799999999999999999999999999986421000                   00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                            ...+.+.|.+.  +++++++++|+.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus       231 ----------------------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        231 ----------------------GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             ----------------------HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence                                  11233444332  789999999999987777777776665 58999999999987654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.84  E-value=1.9e-05  Score=76.32  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |||+|||+||+|+++|..|++.|++|+|+|++....
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999987654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.83  E-value=3.9e-05  Score=69.57  Aligned_cols=63  Identities=22%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCce--EEEeCCCCcC----C-c----------cccee----ccccHHHHHHHcCch
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRS--MVLESSESLR----V-T----------GFAFT----VWTNAWKALDAVGIG   62 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V--~v~E~~~~~~----~-~----------~~~~~----~~~~~~~~l~~~gl~   62 (409)
                      ..+|+|||||++||++|++|++++.+|  +|+|+.+...    . .          ++++.    .....+..+..+|+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            479999999999999999999998765  5699887531    1 0          01111    111366778888987


Q ss_pred             hHHH
Q 015303           63 NSLR   66 (409)
Q Consensus        63 ~~~~   66 (409)
                      +++.
T Consensus        91 ~e~~   94 (491)
T KOG1276|consen   91 DELQ   94 (491)
T ss_pred             ceee
Confidence            6654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.83  E-value=2.3e-05  Score=75.69  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            369999999999999999999999999999998654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.82  E-value=2.9e-05  Score=74.67  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~   39 (409)
                      +.+|+|||||+|||++|..|++.    |.+|+|+|+.+.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            46999999999999999999995    6899999999865

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.82  E-value=2.7e-05  Score=72.41  Aligned_cols=33  Identities=30%  Similarity=0.661  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||+|||+|++|+++|+.|++.|++|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00058 glutathione reductase; Provisional

Probab=97.80  E-value=0.0004  Score=68.12  Aligned_cols=99  Identities=21%  Similarity=0.234  Sum_probs=70.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-+.                  +..+                   
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~-------------------  279 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET-------------------  279 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence            358999999999999999999999999999976431000                  0000                   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC-cEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG-TILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g-~~~~ad~vV~AdG~~  161 (409)
                                           + ...+.+.|.+  .+++++.++++..++.+++ ++.+.+.++ +++.+|.|+.|.|..
T Consensus       280 ---------------------i-~~~l~~~L~~--~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        280 ---------------------I-INELENDMKK--NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             ---------------------H-HHHHHHHHHH--CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence                                 0 1233444443  3789999999999986543 465655444 479999999999975


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       336 Pn  337 (561)
T PTZ00058        336 PN  337 (561)
T ss_pred             CC
Confidence            44

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.78  E-value=2.7e-05  Score=74.98  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            469999999999999999999999999999998653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.77  E-value=0.00033  Score=67.82  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=69.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      -+++|||||+.|+-+|..|++.|.+|+|+++. .+.+                  .+..++                   
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~------------------~~d~~~-------------------  222 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR------------------GFDQDC-------------------  222 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc------------------ccCHHH-------------------
Confidence            47999999999999999999999999999853 1000                  000000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                                            +..+.+.|.+.  +++++.++.++.+...++.+.+++.++   .++.+|.||.|.|..
T Consensus       223 ----------------------~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       223 ----------------------ANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             ----------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence                                  12334445433  789999999999887666666776655   379999999999975


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       279 pn  280 (484)
T TIGR01438       279 AC  280 (484)
T ss_pred             cC
Confidence            43

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.77  E-value=0.0004  Score=67.09  Aligned_cols=98  Identities=22%  Similarity=0.338  Sum_probs=68.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                    
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  211 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPE--------------------  211 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHH--------------------
Confidence            58999999999999999999999999999987542100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC--cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG--TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--~~~~ad~vV~AdG~~  161 (409)
                                          + ...+.+.|.+  . +++++++++++++.+++ .++++..++  .++.+|.||.|.|..
T Consensus       212 --------------------~-~~~~~~~l~~--~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~  267 (460)
T PRK06292        212 --------------------V-SKQAQKILSK--E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRR  267 (460)
T ss_pred             --------------------H-HHHHHHHHhh--c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCc
Confidence                                0 1223334432  2 78999999999987654 455544344  469999999999976


Q ss_pred             hHH
Q 015303          162 SIV  164 (409)
Q Consensus       162 S~v  164 (409)
                      ...
T Consensus       268 p~~  270 (460)
T PRK06292        268 PNT  270 (460)
T ss_pred             cCC
Confidence            443

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.74  E-value=0.0003  Score=66.88  Aligned_cols=98  Identities=24%  Similarity=0.314  Sum_probs=73.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||+|++|+.+|..|+++|++|+++|+.+.+......                                       
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~---------------------------------------  177 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD---------------------------------------  177 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence            58999999999999999999999999999988663322100                                       


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE---EEecCCcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL---LHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~---v~~~~g~~~~ad~vV~AdG~~  161 (409)
                             .            --...+.+.|.+.  +++++.++++..++..++...   +...++..+.+|+++.+.|..
T Consensus       178 -------~------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~  236 (415)
T COG0446         178 -------P------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER  236 (415)
T ss_pred             -------H------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence                   0            0012334444433  688999999999988776543   577788889999999999965


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      -
T Consensus       237 p  237 (415)
T COG0446         237 P  237 (415)
T ss_pred             c
Confidence            4

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.74  E-value=3.8e-05  Score=77.02  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            368999999999999999999999999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=97.73  E-value=0.00046  Score=68.48  Aligned_cols=97  Identities=15%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++......                   ...++                   
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~d~~~-------------------  312 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------EDPAI-------------------  312 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------cCHHH-------------------
Confidence            4799999999999999999999999999996421000                   00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                            ...+.+.|.+.  +++++.+++++.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus       313 ----------------------~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        313 ----------------------GEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence                                  11233444332  789999999999987777777776665 59999999999976543

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.72  E-value=0.0054  Score=60.17  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEec---CC--cEEeccEEEecCCCchHH-HhhhCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA---DG--TILKTKVLIGCDGVNSIV-AKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~---~g--~~~~ad~vV~AdG~~S~v-r~~l~~~  171 (409)
                      .++...+...+...+  .|++++++++|+++..+++.+ .|++.   ++  .+++|+.||.|+|.|+.- .+.++..
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~  200 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD  200 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC
Confidence            567777777776655  378999999999999877764 24432   34  268999999999999864 4445553

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.72  E-value=4.2e-05  Score=73.65  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            468999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.69  E-value=4e-05  Score=74.91  Aligned_cols=37  Identities=38%  Similarity=0.493  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |..++|+||||+|.+|+.+|..|+..|++|+|+|+..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            3457999999999999999999999999999999984

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.66  E-value=0.00061  Score=64.98  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+  .+++++.+++|+.+..+    .+++++|+++.+|++|.|.|..
T Consensus       233 ~~~~~L~~--~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~  279 (424)
T PTZ00318        233 YGQRRLRR--LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVG  279 (424)
T ss_pred             HHHHHHHH--CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCCC
Confidence            44555544  38999999999988643    3567888899999999999954

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.64  E-value=0.00053  Score=67.08  Aligned_cols=91  Identities=25%  Similarity=0.381  Sum_probs=65.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+....                     +                     
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~---------------------~---------------------  390 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA---------------------D---------------------  390 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh---------------------h---------------------
Confidence            4899999999999999999999999999986532100                     0                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE-EEecC---C--cEEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL-LHLAD---G--TILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~-v~~~~---g--~~~~ad~vV~Ad  158 (409)
                                             ..+.+.|.+ ..++++++++.++.+..+++.+. |++.+   +  +++.||.|+.|.
T Consensus       391 -----------------------~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~  446 (515)
T TIGR03140       391 -----------------------KVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQI  446 (515)
T ss_pred             -----------------------HHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEe
Confidence                                   011223322 24789999999999977655543 55543   2  368999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       447 G~~  449 (515)
T TIGR03140       447 GLV  449 (515)
T ss_pred             CCc
Confidence            953

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.63  E-value=6.4e-05  Score=75.37  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            468999999999999999999999999999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.63  E-value=0.00071  Score=61.27  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=64.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.+.+|+++++.+...                    .                    .  
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~--------------------~--  179 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------A--------------------E--  179 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------c--------------------C--
Confidence            489999999999999999999999999999863210                    0                    0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g--~~~~ad~vV~AdG  159 (409)
                                             ..+.+.|.+ ..+++++++++++++..++....+++.   ++  .++.+|.||.|+|
T Consensus       180 -----------------------~~~~~~l~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  235 (300)
T TIGR01292       180 -----------------------KILLDRLRK-NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG  235 (300)
T ss_pred             -----------------------HHHHHHHHh-CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence                                   012233332 237889999999998765532233332   23  4789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       236 ~~  237 (300)
T TIGR01292       236 HE  237 (300)
T ss_pred             CC
Confidence            53

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.63  E-value=7.9e-05  Score=69.20  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+.+|..|++.|++|+|+|+.+.+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            469999999999999999999999999999998653

>PLN02546 glutathione reductase

Probab=97.58  E-value=0.00081  Score=65.99  Aligned_cols=99  Identities=17%  Similarity=0.092  Sum_probs=69.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+...                                   ++.    
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-----------------------------------~d~----  293 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-----------------------------------FDE----  293 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------cCH----
Confidence            58999999999999999999999999999976431100                                   000    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                          -.+..+.+.|.+  .+++++.+++++.+... ++.+.+.+.++....+|.||.|.|....
T Consensus       294 --------------------~~~~~l~~~L~~--~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn  351 (558)
T PLN02546        294 --------------------EVRDFVAEQMSL--RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN  351 (558)
T ss_pred             --------------------HHHHHHHHHHHH--CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence                                001233444433  38999999999999764 3446666655554558999999998765


Q ss_pred             H
Q 015303          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       352 t  352 (558)
T PLN02546        352 T  352 (558)
T ss_pred             C
Confidence            4

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.58  E-value=0.00069  Score=67.54  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +..+                    
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~d~e--------------------  354 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------LDAD--------------------  354 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------CCHH--------------------
Confidence            47999999999999999999999999999987541100                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEecC-------C--------c
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLAD-------G--------T  147 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~-------g--------~  147 (409)
                                          + ...+.+.+.+ ..+++++.++.|+.++..++.  +.+.+.+       +        +
T Consensus       355 --------------------i-s~~l~~~ll~-~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~  412 (659)
T PTZ00153        355 --------------------V-AKYFERVFLK-SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK  412 (659)
T ss_pred             --------------------H-HHHHHHHHhh-cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence                                0 1122232322 237899999999999876532  5555431       1        2


Q ss_pred             EEeccEEEecCCCchHH
Q 015303          148 ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       148 ~~~ad~vV~AdG~~S~v  164 (409)
                      ++.+|.|+.|.|....+
T Consensus       413 ~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        413 ETYVDSCLVATGRKPNT  429 (659)
T ss_pred             EEEcCEEEEEECcccCC
Confidence            69999999999976543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.55  E-value=7.7e-05  Score=70.67  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||+||+|+++|..|++.|++|+++|+.+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            58999999999999999999999999999998764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.54  E-value=0.00011  Score=71.24  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            69999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00015  Score=63.55  Aligned_cols=35  Identities=23%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|-|||||+||.-+|+.++++|++|.|+|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            45899999999999999999999999999997753

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.52  E-value=0.0001  Score=72.90  Aligned_cols=35  Identities=29%  Similarity=0.590  Sum_probs=32.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||+||+||++|..|++.|++|+|+|+.+.+
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999999999999999998764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.44  E-value=0.00015  Score=59.48  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLR   40 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~   40 (409)
                      .||+|||+|-+||++|+..+++  .++|.+||..-.|.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            4999999999999999999864  58999999886653

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.41  E-value=0.0011  Score=61.53  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             HHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCCCc-hHHHhh
Q 015303          110 LLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVN-SIVAKW  167 (409)
Q Consensus       110 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG~~-S~vr~~  167 (409)
                      ..+.|.+.  ++++..++.|++++.++    |++++++ ++.++.+|=|.|.. |++-+.
T Consensus       215 a~~~L~~~--GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~  268 (405)
T COG1252         215 AERALEKL--GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKD  268 (405)
T ss_pred             HHHHHHHC--CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence            34444443  89999999999997763    6777777 59999999999974 444444

>TIGR01810 betA choline dehydrogenase

Probab=97.40  E-value=0.00013  Score=71.67  Aligned_cols=33  Identities=33%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      |+||||||.+|+.+|..|++.| ++|+|+|+++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 79999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02785 Protein HOTHEAD

Probab=97.40  E-value=0.00018  Score=70.94  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .||++|||||.+|+.+|..|++ +.+|+|||++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5999999999999999999999 689999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=97.36  E-value=0.00024  Score=71.08  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999998764

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0013  Score=58.15  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      .+||.+|||||-+||++|...+..|.+|.++|-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            369999999999999999999999999999994

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.29  E-value=0.00035  Score=62.53  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~   40 (409)
                      +..|+|||+||||+.+|..|.++  +++|.|+|+.+.|.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            34899999999999999999884  68999999998763

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.28  E-value=0.0024  Score=59.35  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      ..|+|||+|+.|+-+|..|++.|.+ |+|++++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99998753

>PRK10262 thioredoxin reductase; Provisional

Probab=97.28  E-value=0.0024  Score=58.56  Aligned_cols=33  Identities=12%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            489999999999999999999999999999864

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=97.27  E-value=0.0094  Score=56.78  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEe-cCCcEEeccEEEecCCCchHHHhhh
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHL-ADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      +++|+++++|++|+.+++++++.. .+|+++.||.||.|..... +.+.+
T Consensus       211 g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~-~~~ll  259 (419)
T TIGR03467       211 GGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH-AASLL  259 (419)
T ss_pred             CCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH-HHHhC
Confidence            679999999999999888766544 3677899999999877554 34444

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.21  E-value=0.00027  Score=61.76  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CC-ceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GI-RSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~-~V~v~E~~~~   38 (409)
                      .+++|+|||||-+|+..|..+.++ |- +|.|+|..+.
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            468999999999999999999774 43 7999997754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.16  E-value=0.0035  Score=61.41  Aligned_cols=91  Identities=22%  Similarity=0.329  Sum_probs=65.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||..|+-+|..|++.+.+|+|+++.+....                                        .  
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~----------------------------------------~--  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA----------------------------------------D--  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc----------------------------------------c--
Confidence            4899999999999999999999999999986643100                                        0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE-EEec---CCc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL-LHLA---DGT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.+. ..++++++.++.++++..+++.++ +++.   +++  ++.+|.|+.|.
T Consensus       390 -----------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~  445 (517)
T PRK15317        390 -----------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQI  445 (517)
T ss_pred             -----------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeE
Confidence                                   00112222 234889999999999987655433 4443   232  68999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       446 G~~  448 (517)
T PRK15317        446 GLV  448 (517)
T ss_pred             CCc
Confidence            953

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.10  E-value=0.0067  Score=56.18  Aligned_cols=67  Identities=16%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             cHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCch-----------HHHhhhCCC
Q 015303          106 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNS-----------IVAKWLGFK  171 (409)
Q Consensus       106 ~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~S-----------~vr~~l~~~  171 (409)
                      .-+.+.+.|..++  .+++|+++++|++|  +++.+.+.+.++ .+++||.||.|+|..|           .+.+.+|..
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~  161 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS  161 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence            3456666666655  47999999999999  344577776543 4699999999999876           456777766


Q ss_pred             CCc
Q 015303          172 NPA  174 (409)
Q Consensus       172 ~~~  174 (409)
                      ...
T Consensus       162 i~~  164 (376)
T TIGR03862       162 VAP  164 (376)
T ss_pred             ccC
Confidence            443

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.07  E-value=0.0075  Score=56.33  Aligned_cols=48  Identities=25%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      .+.+.|.+.  +++++.+++++.++..    .+.+.+|+++.+|.||.|.|...
T Consensus       196 ~~~~~l~~~--gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       196 LVLRLLARR--GIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHC--CCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence            344445443  7899999999988532    46677888999999999999643

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.05  E-value=0.0075  Score=57.96  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|++.|.+|+|++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999999774

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.04  E-value=0.0049  Score=59.47  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999998 899999764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.02  E-value=0.00067  Score=68.69  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=33.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++|+|||.|||||++|-.|-+.|+-|+|+||.+.+
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            58999999999999999999999999999999874

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.99  E-value=0.0055  Score=54.51  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..||.+|||||-.|+++|...+.+|.+|.|+|..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            3699999999999999999999999999999976

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.98  E-value=0.0054  Score=56.99  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +++++++++|+.++....  +|.+.+|++++++.++.|+|.
T Consensus       141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence            789999999999988766  688999999999999999997

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.97  E-value=0.0011  Score=62.44  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..+|||+|+|.|+.-+.+|.+|++.|.+|+.+|+++.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y   38 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY   38 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence            67889999999999999999999999999999999985

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.87  E-value=0.0069  Score=56.33  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      -.|+++|+|..|+-+|..|...+.+|+++++.+.+-+.-                                  +   .  
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l----------------------------------f---~--  254 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL----------------------------------F---G--  254 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh----------------------------------h---h--
Confidence            469999999999999999999999999999875522210                                  0   0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                          .               --++.+..++.+.  +++++.++.+.+++.+.  ....|.+.++.++.||+||.+.|+.+
T Consensus       255 ----~---------------~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  255 ----P---------------SIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             ----H---------------HHHHHHHHHHHhc--CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence                0               0022344455443  78999999999998766  44788999999999999999999754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.86  E-value=0.0024  Score=61.30  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            579999999999999999999999999999864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.82  E-value=0.0015  Score=52.92  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||||..|.++|..|+++|++|+|+.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.81  E-value=0.0086  Score=63.29  Aligned_cols=91  Identities=13%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+|+|||+|+.|+.+|..|++.|. .|+|+|..+..         .    .                             
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~----~-----------------------------  355 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------S----P-----------------------------  355 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------h----H-----------------------------
Confidence            589999999999999999999995 58899866321         0    0                             


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEe--cCCcEEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHL--ADGTILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~--~~g~~~~ad~vV~AdG  159 (409)
                                               .+.+.|.+  .+++++.++.++.+..++..  +++..  .+++++.||.|+.+.|
T Consensus       356 -------------------------~l~~~L~~--~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G  408 (985)
T TIGR01372       356 -------------------------EARAEARE--LGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG  408 (985)
T ss_pred             -------------------------HHHHHHHH--cCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC
Confidence                                     01223322  27888999988888655432  33332  1445799999999999


Q ss_pred             CchHH
Q 015303          160 VNSIV  164 (409)
Q Consensus       160 ~~S~v  164 (409)
                      .....
T Consensus       409 ~~Pnt  413 (985)
T TIGR01372       409 WTPVV  413 (985)
T ss_pred             cCchh
Confidence            76543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.81  E-value=0.0011  Score=60.83  Aligned_cols=49  Identities=24%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             CceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303          120 SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      |.+|.++..|.+|..+++. +-|.++||.+++++.||-=.+.|-..-+.+
T Consensus       278 GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  278 GAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             cceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            6799999999999877755 778999999999999998888887776665

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.74  E-value=0.017  Score=55.98  Aligned_cols=38  Identities=26%  Similarity=0.200  Sum_probs=30.0

Q ss_pred             CCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc
Q 015303          286 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK  328 (409)
Q Consensus       286 ~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~  328 (409)
                      .++|+.+||+++.  |   .-+..|+.++..+|..|.+++.+.
T Consensus       430 ~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g~  467 (471)
T PRK12810        430 NPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMGS  467 (471)
T ss_pred             CCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence            4679999999972  1   135679999999999999988753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.71  E-value=0.002  Score=53.41  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..++..|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12831 putative oxidoreductase; Provisional

Probab=96.68  E-value=0.022  Score=54.93  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999999764

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.60  E-value=0.0023  Score=61.83  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      ..||.+|||||-||+.+|..|++. .++|+|+|++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999985 5899999998754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0028  Score=54.49  Aligned_cols=57  Identities=21%  Similarity=0.305  Sum_probs=42.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-----C--CcccceeccccHHHHHHHcCch
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-----R--VTGFAFTVWTNAWKALDAVGIG   62 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-----~--~~~~~~~~~~~~~~~l~~~gl~   62 (409)
                      +++|||+|..|..+|..|.+.|++|+++|+++..     .  ...............|++.|+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            7999999999999999999999999999998753     1  1222333334445777777653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.0032  Score=56.81  Aligned_cols=38  Identities=18%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ||+..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            56667899999999999999999999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.55  E-value=0.026  Score=55.91  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            479999999999999999999999999999774

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.54  E-value=0.12  Score=50.44  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEecCC-----cEEeccEEEecCCCch
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLADG-----TILKTKVLIGCDGVNS  162 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~~g-----~~~~ad~vV~AdG~~S  162 (409)
                      ..|.+.|.+.+  .+++|+++++|++|..+++++ .+...++     +++++|.||.+.....
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~  294 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS  294 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence            45666666655  478999999999998877642 2333333     5789999998888653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.47  E-value=0.021  Score=51.67  Aligned_cols=97  Identities=22%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ..++|||||..||-.+.--.+.|-+|+++|-.+....                                   ..   +++
T Consensus       212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----------------------------------~m---D~E  253 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----------------------------------VM---DGE  253 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----------------------------------cc---CHH
Confidence            4789999999999999999999999999995432100                                   00   100


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC-----cEEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG-----TILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g-----~~~~ad~vV~Ad  158 (409)
                                          + .+.+.+.|..  ++.++..+++|+.....++ .+.++..+-     ++++||.+..|.
T Consensus       254 --------------------i-sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsi  310 (506)
T KOG1335|consen  254 --------------------I-SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSI  310 (506)
T ss_pred             --------------------H-HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEc
Confidence                                0 1233344443  4889999999999998877 577766542     379999999999


Q ss_pred             CCch
Q 015303          159 GVNS  162 (409)
Q Consensus       159 G~~S  162 (409)
                      |+.-
T Consensus       311 GRrP  314 (506)
T KOG1335|consen  311 GRRP  314 (506)
T ss_pred             cCcc
Confidence            9643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.37  E-value=0.0048  Score=55.32  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=33.5

Q ss_pred             CCCc-ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESV-EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~-~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.. .+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4443 3799999999999999999999999999998865

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.0047  Score=59.72  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|+|||.|++|+++|..|++.|++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.0055  Score=59.55  Aligned_cols=33  Identities=27%  Similarity=0.596  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999765

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.23  E-value=0.0055  Score=50.91  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|-.|+.+|..|++.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            799999999999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.22  E-value=0.0077  Score=48.35  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             EEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+|+|+|-.|+..|..|++.|++|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7999999999999999999999999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.22  E-value=0.012  Score=57.41  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+-.|..|++...+|.+.=|+..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            35899999999999999999999889999888753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.09  E-value=0.007  Score=55.02  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            799999999999999999999999999998854

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.07  E-value=0.011  Score=57.27  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            58999999999999999999999999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.03  E-value=0.063  Score=55.29  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~   38 (409)
                      .+|+|||||..|+-+|..|.+.|.+ |+|+++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4899999999999999999999987 999997643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.01  Score=57.27  Aligned_cols=34  Identities=29%  Similarity=0.579  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.97  E-value=0.011  Score=53.93  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4689999999999999999999999999999864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.96  E-value=0.094  Score=52.98  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|.+.|. +|+|++++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            489999999999999999999996 599998765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.93  E-value=0.011  Score=53.59  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|+|+|-.|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            589999999999999999999999999999863

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.92  E-value=0.012  Score=53.38  Aligned_cols=34  Identities=12%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|...|..++.+|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.88  E-value=0.012  Score=52.92  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.84  E-value=0.016  Score=46.76  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      ...|+|||||..|...|..|.+.|.+|+|+.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            46899999999999999999999999999953

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.81  E-value=0.014  Score=53.27  Aligned_cols=38  Identities=24%  Similarity=0.510  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++-.+|.|||+|..|...|..|++.|++|+++|++..
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            55546899999999999999999999999999997654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.81  E-value=0.013  Score=52.94  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            55546799999999999999999999999999998754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.81  E-value=0.075  Score=48.73  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CCceEEeCCeEEEEEEeCCe-EEEEecCC-----cEEeccEEEecCCCch
Q 015303          119 PSGTIRYSSQVVSIEESGHF-KLLHLADG-----TILKTKVLIGCDGVNS  162 (409)
Q Consensus       119 ~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-----~~~~ad~vV~AdG~~S  162 (409)
                      +.+.+..+++|.+++..+++ +.+.+...     ++++.|.||.|||.+-
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR  340 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence            46789999999999998866 77776543     3789999999999873

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.73  E-value=0.014  Score=53.89  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ||+  +|.|||+|..|...|..|++.|++|+++++.
T Consensus         1 ~~m--kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          1 MMA--RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CCc--eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            553  7999999999999999999999999999974

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.73  E-value=0.016  Score=53.21  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |...++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            44556899999999999999999999999999998643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.014  Score=52.44  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.60  E-value=0.02  Score=48.39  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||||.+|..-+..|.+.|.+|+|+++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            358999999999999999999999999999865

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.59  E-value=0.017  Score=52.07  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998754

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.57  E-value=0.018  Score=45.17  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|+|+|-.|..+|..|++.|+ +++|+|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            4689999999999999999999998 7999998754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.55  E-value=0.018  Score=52.40  Aligned_cols=30  Identities=33%  Similarity=0.337  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|+|||+|..|.++|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999997

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.53  E-value=0.019  Score=51.54  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3799999999999999999999999999998754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.52  E-value=0.012  Score=43.76  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            34689999999999999999999999999999874

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.52  E-value=0.037  Score=50.61  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          119 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       119 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .++.++-+..|.++......+.+.++||.+++.|+||.|.|-.
T Consensus       406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e  448 (659)
T KOG1346|consen  406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE  448 (659)
T ss_pred             cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence            3789999999999988888899999999999999999999963

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.51  E-value=0.018  Score=52.21  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|++.|++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999853

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.44  E-value=0.045  Score=53.91  Aligned_cols=106  Identities=23%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ..-+|||||.-|+-+|..|...|.+|+|++=.+..-               -++|                   +...+ 
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------erQL-------------------D~~ag-  190 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------ERQL-------------------DRTAG-  190 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------HHhh-------------------hhHHH-
Confidence            346999999999999999999999999998543310               0000                   00000 


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-  163 (409)
                                             ..|...|.+.  +++++.+...+.+...+....+.++||..+.||+||-|+|..-. 
T Consensus       191 -----------------------~lL~~~le~~--Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~  245 (793)
T COG1251         191 -----------------------RLLRRKLEDL--GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND  245 (793)
T ss_pred             -----------------------HHHHHHHHhh--cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence                                   1112222221  55666665555555545556788999999999999999998533 


Q ss_pred             -HHhhhCC
Q 015303          164 -VAKWLGF  170 (409)
Q Consensus       164 -vr~~l~~  170 (409)
                       +.+..|+
T Consensus       246 ela~~aGl  253 (793)
T COG1251         246 ELAKEAGL  253 (793)
T ss_pred             HhHHhcCc
Confidence             3444433

>PRK04148 hypothetical protein; Provisional

Probab=95.44  E-value=0.017  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|++||.| .|..+|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 999999999999999999998755

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.41  E-value=0.025  Score=47.66  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999999 699999874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.40  E-value=0.022  Score=55.45  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++-.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            44545899999999999999999999999999998754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.38  E-value=0.028  Score=47.50  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            468999999999999999999999999999853

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.36  E-value=0.03  Score=51.05  Aligned_cols=37  Identities=11%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+..+|+|||+|-.|.++|..|+..|+ +|+|+|.++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            345789999999999999999999996 8999998765

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.34  E-value=0.022  Score=44.55  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|+|+.+.+++..++..|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998865

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.31  E-value=0.027  Score=42.85  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|||.|..|..++..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.27  E-value=0.032  Score=45.67  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +..|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.23  E-value=0.14  Score=48.51  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             EEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ++|||+|++|+.+|..|.+.+  .+|+++.+........+.+..               .+.              ....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~---------------~~~--------------~~~~   51 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL---------------YVG--------------GGIA   51 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccch---------------HHh--------------cccC
Confidence            589999999999999998854  578877777554333221110               000              0000


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ....+.              ....     .. ...++.+..+++|+.++....  .+.+.++ .+.+|.+|.|+|..-.
T Consensus        52 ~~~~~~--------------~~~~-----~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          52 SLEDLR--------------YPPR-----FN-RATGIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             CHHHhc--------------ccch-----hH-HhhCCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCccc
Confidence            000000              0001     22 223688999999999987666  4555666 7899999999997643

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.16  E-value=0.03  Score=50.79  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|.|||+|..|.++|+.|+..|+  +|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999994  7999998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.13  E-value=0.035  Score=48.80  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4689999999999999999999995 8999997754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.12  E-value=0.31  Score=47.19  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            589999999999999999999995 7999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.12  E-value=0.028  Score=53.33  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.11  E-value=0.044  Score=43.35  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=30.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|+|||+ |..|.++|+.|...++  ++.|+|....
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            7999999 9999999999999885  6999998854

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.042  Score=49.51  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .|||+|+|.|+.=+.++..|+..|.+|+.||+++.-
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y   41 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY   41 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence            499999999999999999999999999999999853

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.03  E-value=0.16  Score=50.17  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      .+.+++|||.|++|..+...+.+   .-++|+++-..+.+...-  +.+++              +            ..
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls~--------------v------------l~   53 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLSS--------------V------------LA   53 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeecc--------------c------------cC
Confidence            34699999999999999999888   346899998776643321  11111              0            00


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      ..  .....+              .+.+.++    +++ .+++++.+.+|+.|+....  .|+.+.|.++.+|-+|.|+|
T Consensus        54 ~~--~~~edi--------------~l~~~dw----y~~-~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATG  110 (793)
T COG1251          54 GE--KTAEDI--------------SLNRNDW----YEE-NGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATG  110 (793)
T ss_pred             CC--ccHHHH--------------hccchhh----HHH-cCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecC
Confidence            00  000000              1111111    122 2789999999999987765  67788899999999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       111 S~p  113 (793)
T COG1251         111 SYP  113 (793)
T ss_pred             ccc
Confidence            654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.01  E-value=0.038  Score=50.22  Aligned_cols=36  Identities=28%  Similarity=0.201  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..+|.|||+|-.|.++|..|++.|++|.++++...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            456899999999999999999999999999998753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.95  E-value=0.059  Score=42.29  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      ...|+|||+|-+|-+++..|++.|.+ |+|+.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            46899999999999999999999987 99999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.014  Score=52.93  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=36.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+..|||+|+|-|..=+.++..|+..|.+|+.+||++.-
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY   39 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence            777899999999999999999999999999999999853

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.92  E-value=0.036  Score=50.88  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|-.|.++|..|++.|++|.+++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999864

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.88  E-value=0.031  Score=46.68  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ....|.|||+|..|.-.|.-.+..|++|.|+|++..
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            346899999999999999999999999999998865

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.87  E-value=0.046  Score=49.49  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|.|||+|..|..+|..|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            479999999999999999999887 8999998533

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.84  E-value=0.043  Score=51.13  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.81  E-value=0.038  Score=50.70  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|++.|++|+++++.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            799999999999999999999999999998643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.72  E-value=0.037  Score=53.34  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .-+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45899999999999999999999999999998754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.72  E-value=0.05  Score=44.29  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||-|-.|...|..|.++|++|.++|+.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            4899999999999999999999999999998753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.70  E-value=0.15  Score=47.98  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCC--cEEeccEEEecCCCc-hH
Q 015303          105 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADG--TILKTKVLIGCDGVN-SI  163 (409)
Q Consensus       105 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g--~~~~ad~vV~AdG~~-S~  163 (409)
                      +.-.+|.+.|.+.+  .++++..+++|+++..++++++ +.+.++  .+++||.+|.|+|.| |.
T Consensus       260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence            45566666666654  3789999999999998888766 444555  379999999999999 75

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.69  E-value=0.059  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|.++|+.|+..|+  ++.|+|.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            4699999999999999999999997  7999998643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.63  E-value=0.039  Score=49.37  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||.|..|.++|..|+++|++|.++|+++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.62  E-value=0.047  Score=51.23  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|+|+|+.|+.+|..|+..|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4899999999999999999999999999998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.57  E-value=0.4  Score=50.22  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-C-CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL-G-IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~-g-~~V~v~E~~~~   38 (409)
                      .+|+|||||.+|+-+|..+.+. | .+|+|+.+++.
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~  704 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  704 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence            4799999999999999998887 5 48999998753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.56  E-value=0.066  Score=43.61  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=30.1

Q ss_pred             cccEEEECCCh-HHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..+|+|||+|- +|..+|..|.+.|.+|+++.|.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999996 6999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.55  E-value=0.061  Score=45.47  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            4689999999999999999999998 8999998754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.53  E-value=0.055  Score=49.64  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|++..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4689999999999999999999998 8999998863

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.53  E-value=0.044  Score=52.09  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.45  E-value=0.054  Score=51.22  Aligned_cols=36  Identities=33%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~   39 (409)
                      +.++=|||+|+|+|++|.+|-|-    |-+|+|+|+.+.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            35788999999999999999884    4689999987643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.43  E-value=0.57  Score=47.53  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            479999999999999999999996 6999887644

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.29  E-value=0.077  Score=46.25  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++..++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            346899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.28  E-value=0.079  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +|+|||+|-.|...|..|++.|+ +++++|.+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            48999999999999999999998 5999998753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.27  E-value=0.062  Score=52.19  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998865

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.20  E-value=0.078  Score=46.11  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            4689999999999999999999997 7999998754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.15  E-value=0.074  Score=45.67  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.||| +|..|.++|..|++.|++|.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.14  E-value=0.073  Score=49.24  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      .+|+|||||-.|..+|..|+++| .+|++.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            48999999999999999999999 8999999984

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.13  E-value=0.081  Score=46.21  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            4689999999999999999999997 7999997743

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.03  E-value=0.085  Score=48.43  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            4689999999999999999999999 8999998753

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.03  E-value=0.085  Score=47.98  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|..|..+|..|+..|+ +|.++|....
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999998644

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.99  E-value=0.073  Score=48.71  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|=.||..|..|++.|++|+.+|.++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            3799999999999999999999999999998764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.98  E-value=0.66  Score=46.16  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEe-CCeEE-E---EecCCc--EEeccEEEecCCCchHH
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFKL-L---HLADGT--ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v---~~~~g~--~~~ad~vV~AdG~~S~v  164 (409)
                      ..+...|.+.+  .+++++.++.++++..+ ++.|. +   ...+|+  .+.|+.||.|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            45666666654  47899999999998764 44432 2   223554  57899999999998754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.98  E-value=0.076  Score=51.70  Aligned_cols=34  Identities=15%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998865

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.97  E-value=0.097  Score=41.52  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999998 7999998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.93  E-value=0.1  Score=44.43  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            4689999999999999999999998 5999998743

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.90  E-value=0.094  Score=45.32  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|...|..|++.|. +++|+|.+..
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            4689999999999999999999998 7999997743

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.80  E-value=0.1  Score=48.79  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            35899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08328 hypothetical protein; Provisional

Probab=93.75  E-value=0.11  Score=44.99  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4689999999999999999999998 6999987744

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.74  E-value=0.11  Score=47.04  Aligned_cols=36  Identities=17%  Similarity=0.487  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++.+|.|||+|-.|.++|+.|+..|+  ++.|+|....
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            35699999999999999999999886  6999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07208 hypothetical protein; Provisional

Probab=93.67  E-value=3.3  Score=40.31  Aligned_cols=57  Identities=25%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE--EEEe--cCCc--EEeccEEEecCCCchHH
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK--LLHL--ADGT--ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v--~v~~--~~g~--~~~ad~vV~AdG~~S~v  164 (409)
                      ..|.+.|.+.+  .+++|+++++|++|..+++++  .++.  .+|.  ++.||.||.|...+...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~  282 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELV  282 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHH
Confidence            34555555544  368999999999999887653  2332  2343  58899999888765544

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.61  E-value=0.1  Score=47.31  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|+|||+|-+|.++|..|+..|+  +|.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            69999999999999999999994  7999998754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05442 malate dehydrogenase; Provisional

Probab=93.58  E-value=0.11  Score=47.34  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~~~   38 (409)
                      |+...+|.|||+ |..|.++|+.|...|+       ++.|+|....
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~   46 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPA   46 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCc
Confidence            777889999998 9999999999998764       6999997643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.58  E-value=0.11  Score=46.82  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||.|.+|.+++..|++.|.+|+++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999999999999999999999999998843

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.58  E-value=0.12  Score=43.45  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|..|+..|..|++.|. +++++|.+..
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            4689999999999999999999998 5999997743

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.50  E-value=0.12  Score=44.45  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4689999999999999999999998 8999997754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.43  E-value=0.085  Score=53.76  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|...|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998865

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.42  E-value=0.13  Score=44.67  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=30.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC-----------CceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG-----------IRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g-----------~~V~v~E~~~~   38 (409)
                      ++.+|+|||+|-.|+.++..|++.|           .+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4679999999999999999999974           38899997744

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=93.42  E-value=0.3  Score=44.93  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=77.3

Q ss_pred             cccEEEECCChHHHHHHHHHHH--cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR--LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~--~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +..-+|||+|-+..+++.....  .+.+|.+|--.+.....-     .|-+.+      ||-.-  .......+.+..+.
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmR-----PPLSKE------LW~~~--dpn~~k~lrfkqws  244 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMR-----PPLSKE------LWWYG--DPNSAKKLRFKQWS  244 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccC-----CCcchh------ceecC--CCChhhheeecccC
Confidence            4568999999888877766644  456888887665432110     010111      11000  00111222222221


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                       |+. ..+-|.       +....++..+|.....   .++-+..+.+|+.|..++.  .|++.||.+|.+|-+++|+|..
T Consensus       245 -Gke-Rsiffe-------pd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~  310 (659)
T KOG1346|consen  245 -GKE-RSIFFE-------PDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVR  310 (659)
T ss_pred             -Ccc-ceeEec-------CCcceeChhHCccccc---CceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcC
Confidence             111 122232       2334566666655432   3678999999999988776  5678899999999999999986


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      -.
T Consensus       311 Pk  312 (659)
T KOG1346|consen  311 PK  312 (659)
T ss_pred             cc
Confidence            54

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.40  E-value=0.1  Score=50.40  Aligned_cols=34  Identities=18%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|+|.|.+|+++|..|++.|++|++.|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            3799999999999999999999999999997653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.39  E-value=0.11  Score=46.91  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|..|...|..|++.|++|.++|+++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3799999999999999999999999999998653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.37  E-value=0.14  Score=43.19  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            4689999999999999999999998 5999997743

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.36  E-value=0.064  Score=41.32  Aligned_cols=33  Identities=30%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +.+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            479999999999999999999999998877644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.34  E-value=0.1  Score=49.26  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            458999999999999999999999999999987765

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.30  E-value=0.13  Score=45.96  Aligned_cols=33  Identities=33%  Similarity=0.558  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|+|+|-+|.++|..|++.|. +|+|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999998 799999873

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.27  E-value=0.11  Score=48.83  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|-.|+.+|..|+. |++|+++|+++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999988885 999999998764

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.25  E-value=0.095  Score=53.31  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|...|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998865

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.23  E-value=0.16  Score=42.80  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999866

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.23  E-value=0.15  Score=46.54  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .+.+|+|||+|-.|.++|+.|+..| .++.|+|.+..
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            4569999999999999999999999 58999998754

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.22  E-value=0.15  Score=43.98  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCc---eEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIR---SMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~---V~v~E~~~   37 (409)
                      ..+|+|+|+|-+|...|..|.+.|.+   |.|+||..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            35899999999999999999999975   99999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.21  E-value=0.11  Score=48.12  Aligned_cols=33  Identities=33%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+||.||+++..++..|. +|+++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            59999999999999888888885 6778887654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.17  E-value=0.11  Score=50.56  Aligned_cols=32  Identities=28%  Similarity=0.559  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..|+|+|.|++|++++..|.+.|.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999965

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.16  E-value=0.13  Score=49.60  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|++|++++..+...|.+|.++|.+..
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.14  E-value=0.1  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|..+|..|++.|++|+++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            489999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.08  E-value=0.16  Score=48.92  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|+|.|.+|+++|..|+++|.+|+++|..+.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999997654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.06  E-value=0.24  Score=35.26  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc-CCceEEEeC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLES   35 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~   35 (409)
                      ..+++|+|+|-+|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45899999999999999999998 578999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.00  E-value=0.14  Score=45.79  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||||..|.-.|..++..|++|+++|.++.
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            5899999999999999999998899999998843

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.99  E-value=0.12  Score=49.80  Aligned_cols=33  Identities=33%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            799999999999999999999999999998654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.97  E-value=0.13  Score=46.65  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|+|+|-.|...|..|++.|.+|+++-|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            799999999999999999999988888877643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.97  E-value=0.095  Score=46.19  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +-+|+|||||.+|.-+|..+..-|-+|+++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4589999999999999999999999999999874

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.96  E-value=0.13  Score=49.36  Aligned_cols=34  Identities=26%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      ++|+|||.|-.|+.+|..|+++|  ++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            37999999999999999999984  78999998764

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.92  E-value=0.13  Score=46.54  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            7 IVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         7 v~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |.|||+|-.|..+|..|+..|+ +|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999999999887 9999998843

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.90  E-value=0.14  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~   37 (409)
                      .+|.|||+|..|.++|..|.+.|   .+|.+++++.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            37999999999999999999998   6888998764

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.87  E-value=0.14  Score=48.80  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||-|.+|+++|..|.+.|++|+++|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999997643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.87  E-value=0.16  Score=45.57  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|.|-+|.++|..|+..|.+|++++|..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=92.86  E-value=0.11  Score=52.93  Aligned_cols=34  Identities=15%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|...|..++..|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            3699999999999999999999999999998865

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=92.86  E-value=0.18  Score=47.61  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            35799999999999999999999999999998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.15  Score=49.13  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            479999999999999999999999999999764

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.84  E-value=0.16  Score=49.01  Aligned_cols=38  Identities=37%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..+--|+|||.|-+|+++|..|++.|++|++.|....
T Consensus         3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            44455799999999999999999999999999997653

>PRK08223 hypothetical protein; Validated

Probab=92.83  E-value=0.18  Score=44.66  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            4689999999999999999999998 7999997754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.75  E-value=0.14  Score=46.50  Aligned_cols=33  Identities=21%  Similarity=0.501  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .+|+|||+|..|.++|..|++.|+  +|.++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999985  899999864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.73  E-value=0.14  Score=50.92  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|..|-.+|..|.++|++|+++|+++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4789999999999999999999999999998854

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.63  E-value=0.21  Score=41.95  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            58999997 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.63  E-value=0.15  Score=46.07  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|..+|..|++.|++|.++++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.59  E-value=0.19  Score=45.48  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|.|||+|-.|.++|+.|...++  ++.|+|....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999999999886  6999997643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.56  E-value=0.15  Score=49.35  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHH-HHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLT-TSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~-~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||.|-+|++ +|..|+++|++|++.|.+..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            347999999999999 69999999999999998654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=92.49  E-value=0.16  Score=45.86  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|...|..|++.|++|+++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998754

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.49  E-value=0.19  Score=47.04  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..|+||| .|..|..+|..|.++|++|.+++++
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            5799999 8999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		3e-22
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		7e-21
3all_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-10
3alh_A	379	Higher Resolution And Native Structure Of 2-Methyl-		3e-10
3gmc_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		4e-10
3alk_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		4e-10
3c96_A	410	Crystal Structure Of The Flavin-Containing Monooxyg		1e-09
3gmb_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-09
2rgj_A	402	Crystal Structure Of Flavin-Containing Monooxygenas		3e-09
4hb9_A	412	Crystal Structure Of A Putative Fad Containing Mono		1e-07
3alm_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		4e-06
3ihg_A	535	Crystal Structure Of A Ternary Complex Of Aklavinon		3e-05

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 21/349 (6%)
Query: 8   VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
           +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G+G+ +  
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86
Query: 68  QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
               LR +      SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct: 87  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 145
Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
            +V   EE      +   DG+     +LI  DG +S +  W+      F  +    GY +
Sbjct: 146 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 201
Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
           + G         P   +  F G+G +   +P      Y+FF     +   E  D   A+L
Sbjct: 202 WNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261
Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
            ++  G    +   + A      LD   ++R++    +   +  + RG V + GDA H  
Sbjct: 262 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 313
Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
           TPDIGQGGCAA+ED +VL     +       + E + +  ++  ++ LK
Sbjct: 314 TPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%)
Query: 8   VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
           +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K    +G G+    
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXET 86
Query: 68  QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
               LR        SG+  ++ SL  +  + G       R +L  E L       ++++ 
Sbjct: 87  FGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREXL-DYWGRDSVQFG 145
Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
            +V   EE      +   DG+     +LI  DG +S +  W+      F  +    GY +
Sbjct: 146 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 201
Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
           + G         P   +  F G+G R    P      Y+FF     +   E  D   A+L
Sbjct: 202 WNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261
Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
            ++  G    +   + A      LD   ++R++    +   +  + RG V + GDA H  
Sbjct: 262 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 313
Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
           TPDIGQGGCAA ED +VL     +       + E + +  ++  ++ LK
Sbjct: 314 TPDIGQGGCAAXEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362

>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68  QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
            H      + +   ++S +  +    ++  +   H+    R + L            I  
Sbjct: 76  SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +      I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
                 +  HG   N +    F+ +  R  + PC++  +Y      + + D        +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
           L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA H 
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKAETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
           M P + QG   A+ +   L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317

>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68  QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
            H      + +   ++S +  +    ++  +   H+    R + L            I  
Sbjct: 76  SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +      I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
                 +  HG   N +    F+ +  R  + PC++  +Y      + + D        +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
           L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA H 
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
           M P + QG   A+ +   L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317

>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 135/327 (41%), Gaps = 37/327 (11%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 111
Query: 68  QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
            H      + +   ++S +  +    ++  +   H+    R + L            I  
Sbjct: 112 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 162
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI---- 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +  +    
Sbjct: 163 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 219
Query: 182 --RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
             R   +    HG   N +    F+ +  R  + PC++  +Y      + + D       
Sbjct: 220 VPRMKKEL--GHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVP 275
Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
            +L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA 
Sbjct: 276 IDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAA 326
Query: 297 HPMTPDIGQGGCAALEDGIVLARCINE 323
           H M P + QG   A+ +   L++ + E
Sbjct: 327 HAMCPALAQGAGCAMVNAFSLSQDLEE 353

>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68  QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
            H      + +   ++S +  +    ++  +   H+    R + L            I  
Sbjct: 76  SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +      I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
                 +  HG   N +    F+ +  R  + PC++  +Y      + + D        +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
           L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA H 
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKFETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
           M P + QG   A+ +   L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317

>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 150/395 (37%), Gaps = 76/395 (19%)
Query: 6   DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
           DI+I GAGI GL+ +L L++ GI +  +LESS  +R  G    +   A +AL  +G+G +
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65  LRQQH---QQLRSIVAT-PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           L        +LR I  +  T+  +P    +     +Y  H  R   + +LL  + + L  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH--RGELQMILLAAVRERLGQ 123
Query: 121 GTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
             +R    V  IEE     L+   DG      L   VL+G DG++S V   L        
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 177 --GRSAIRGYSDF-------------------------KGSHGFEPNFLQFFGKGLRSGF 209
             G +  RG ++F                            H  E   L  +   + S  
Sbjct: 184 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAA 243
Query: 210 IPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLG--KLHDLPAQVKAVIEKTPLDSII 267
           +   D    W       ++D  LED       + LG   + DL  + + +++   +D   
Sbjct: 244 VGQLDNEADW-------NRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVD--- 293
Query: 268 SSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 327
                 R P    WG   RG + + GDA H M P    G   A+ DGI LA  +      
Sbjct: 294 ------RDPLP-HWG---RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR---- 339
Query: 328 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELI 362
                       N  V   L+ Y + RR    ++I
Sbjct: 340 ------------NADVAAALREYEEARRPTANKII 362

>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 38/316 (12%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 111
Query: 68  QHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GTIRY 125
            H        TP         +S+  +  +     R   R  L + L     +    I  
Sbjct: 112 SH--------TPPTYETWXHNKSVSKE-TFNGLPWRIXTRSHLHDALVNRARALGVDISV 162
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI---- 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +  +    
Sbjct: 163 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 219
Query: 182 --RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
             R   +    HG   N +    F+ +  R  + PC++  +Y      + + D       
Sbjct: 220 VPRXKKEL--GHGEWDNTIDXWNFWPRVQRILYSPCNENELY--LGLXAPAADPRGSSVP 275
Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
            +L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA 
Sbjct: 276 IDLEVWV----EXFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAA 326
Query: 297 HPMTPDIGQG-GCAAL 311
           H   P + QG GCA +
Sbjct: 327 HAXCPALAQGAGCAXV 342

>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 149/395 (37%), Gaps = 76/395 (19%)
Query: 6   DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
           DI+I GAGI GL+ +L L++ GI +  +LESS  +R  G    +   A +AL  +G+G +
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65  LRQQH---QQLRSIVAT-PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
           L        +LR I  +  T+  +P    +     +Y  H  R   + +LL  + + L  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH--RGELQXILLAAVRERLGQ 123
Query: 121 GTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
             +R    V  IEE     L+   DG      L   VL+G DG++S V   L        
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 177 --GRSAIRGYSDF-------------------------KGSHGFEPNFLQFFGKGLRSGF 209
             G +  RG ++F                            H  E   L  +   + S  
Sbjct: 184 HGGITXWRGVTEFDRFLDGKTXIVANDEHWSRLVAYPISARHAAEGKSLVNWVCXVPSAA 243
Query: 210 IPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLG--KLHDLPAQVKAVIEKTPLDSII 267
           +   D    W       ++D  LED       + LG   + DL  + + +++   +D   
Sbjct: 244 VGQLDNEADW-------NRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVD--- 293
Query: 268 SSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 327
                 R P    WG   RG + + GDA H   P    G   A+ DGI LA  +      
Sbjct: 294 ------RDPLP-HWG---RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALAR---- 339
Query: 328 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELI 362
                       N  V   L+ Y + RR    ++I
Sbjct: 340 ------------NADVAAALREYEEARRPTANKII 362

>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 102/254 (40%), Gaps = 38/254 (14%)
Query: 95  GKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIE--ESGHFKLLHLADGTILKTK 152
           GK    +   + R  L E L K L + TI+++   V  E  E+G  K+   ADG+     
Sbjct: 99  GKIISEQRLSISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIF-FADGSHENVD 156
Query: 153 VLIGCDGVNSIVAK-WLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIP 211
           VL+G DG NS V K +L F     VG S I G +    +        Q F  G  +  +P
Sbjct: 157 VLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARL--TPALTALLPQNFRDGTPNSIVP 214
Query: 212 CD------------------------DQTIYWFFTWTSSSQDKELEDHSAE-LKQFVLGK 246
                                     D  I W +   + S    + D SAE L   V  +
Sbjct: 215 KSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSR 274
Query: 247 LHDLPAQVKAVIEKTPLDSIISSRLQYRQ-PQEVLWGNISRGSVCVAGDALHPMTPDIGQ 305
                  +  +++++  ++I  S L  R  P  + W +    +V + GDA+H  TP  G 
Sbjct: 275 XISWDPSLHTLVQQSDXENI--SPLHLRSXPHLLPWKS---STVTLLGDAIHNXTPXTGS 329
Query: 306 GGCAALEDGIVLAR 319
           G   AL D ++L +
Sbjct: 330 GANTALRDALLLTQ 343

>pdb|3ALM|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant C294a Length = 379

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9   IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
           + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G + + L+ 
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68  QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
            H      + +   ++S +  +    ++  +   H+    R + L            I  
Sbjct: 76  SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
           +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK   +V +      I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
                 +  HG   N +    F+ +  R  + PC++  +Y      + + D        +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
           L+ +V       P     +IE   L +      +Y + +     + +RG V + GDA H 
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
           M P + QG   A+ +   L++ + E
Sbjct: 293 MAPALAQGAGCAMVNAFSLSQDLEE 317

>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11 Hydroxylase With Fad And Aklavinone Length = 535

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 147/381 (38%), Gaps = 73/381 (19%)
Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-----------------SSESLRVTGFAFTV 48
           D+++VGAG+ GL+T++ L R G+R +V+E                 + E LR+ G A  V
Sbjct: 7   DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEV 66
Query: 49  WTNAWKALDAVGI-------------GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQG 95
                +A D  G              G  LR   +    +VA  T    P+    L  Q 
Sbjct: 67  ----VRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAA-TEPCTPAGWAMLS-QD 120
Query: 96  KYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE------SGHFKLLHLADGTI- 148
           K            +LL    K    G IR+ ++++S  +      +G    L   DG   
Sbjct: 121 KL---------EPILLAQARKH--GGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYD 169
Query: 149 LKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGY---SDFKGSHGFEPNFLQFF---G 202
           L+   L+G DG  S+V + LG         + + G    +D  G    EP    ++    
Sbjct: 170 LRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGI--MEPGTTGWYYLHH 227
Query: 203 KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTP 262
              +  F P D    +  F      + +  ED + +    ++G   D P     +++   
Sbjct: 228 PEFKGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQG 287
Query: 263 LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 322
            +  +++R+  R      W     G V +AGDA     P  G  G AA+ DG  LA  + 
Sbjct: 288 WE--MAARIAER------W---REGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLA 336
Query: 323 EALKTKQGVGEEDEEEFNKRV 343
             L+ + G G  D  E  ++V
Sbjct: 337 AVLQGQAGAGLLDTYEDERKV 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-79
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	1e-59
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-57
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-53
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	9e-49
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-26
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-24
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-22
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	4e-21
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	6e-21
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-20
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	4e-19
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	2e-18
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	2e-17
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	9e-17
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	1e-15
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-15
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	3e-13
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	3e-09
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	7e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	9e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	6e-05
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	8e-05
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	1e-04
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	4e-04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	5e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	5e-04
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	7e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  250 bits (640), Expect = 1e-79
 Identities = 86/392 (21%), Positives = 148/392 (37%), Gaps = 27/392 (6%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
            +     +++GAGI GL+ ++ L + GI   V E+ + ++  G A +VW N  K +  +G
Sbjct: 20  FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLG 79

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELP 119
           +G+ +      LR +      SG+  ++ SL  +  + G      V R  L   +     
Sbjct: 80  MGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTG-SRPCPVSRAELQREMLDYWG 138

Query: 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL--GFKNPAFVG 177
             ++++  +V   EE      +   DG+     +LI  DG +S +  W+        + G
Sbjct: 139 RDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAG 198

Query: 178 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237
                G  +   +      +  F G+G +   +P      Y+FF          L +   
Sbjct: 199 YVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPL---PAGLAEDRD 255

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH 297
            L+  +          V+ +I      +     +   +P         RG V + GDA H
Sbjct: 256 TLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSR-L---VRGRVALLGDAGH 311

Query: 298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWR 357
             TPDIGQGGCAA+ED +VL     +           D       +   L+ Y  +R  R
Sbjct: 312 STTPDIGQGGCAAMEDAVVLGAVFRQT---------RD-------IAAALREYEAQRCDR 355

Query: 358 CFELISIAYLVGSIQQSDGKILNFLRDKILAS 389
             +L+  A     I       L     + L  
Sbjct: 356 VRDLVLKARKRCDITHGKDMQLTEAWYQELRE 387

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  197 bits (503), Expect = 1e-59
 Identities = 69/361 (19%), Positives = 117/361 (32%), Gaps = 47/361 (13%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLR 66
             + G G AGLT ++ L + G    + E S  LR  G    +W N  + L+ +G      
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGAL---- 69

Query: 67  QQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG--TIR 124
                +     TP         +S+  +   G    R + R  L + L     +    I 
Sbjct: 70  ---DDVLQGSHTPPTYETWMHNKSVSKETFNG-LPWRIMTRSHLHDALVNRARALGVDIS 125

Query: 125 YSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKN-PAFVGRSAIRG 183
            +S+ V+ +  G    L L  G +L+  +++G DGV S V   +GFK          IR 
Sbjct: 126 VNSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRL 182

Query: 184 YSDFKGSHGFEP------NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237
                             +   F+ +  R  + PC++  +Y       +           
Sbjct: 183 IVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLM---APAADPRGSSVP 239

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH 297
              +  +     L   +    +                  +  W   +RG V + GDA H
Sbjct: 240 IDLEVWVEMFPFLEPCLIEAAK----LKTARYDKYETTKLDS-W---TRGKVALVGDAAH 291

Query: 298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWR 357
            M P + QG   A+ +   L++ + E                   VE  L  +    R  
Sbjct: 292 AMCPALAQGAGCAMVNAFSLSQDLEEG----------------SSVEDALVAWETRIRPI 335

Query: 358 C 358
            
Sbjct: 336 T 336

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  192 bits (489), Expect = 2e-57
 Identities = 65/379 (17%), Positives = 132/379 (34%), Gaps = 35/379 (9%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLE--SSESLRVTGFAFTVW-TNAWKALD 57
           + S +++ I+G G  GLT +  L + GI   V E  +    R+ G    +   +  +A+ 
Sbjct: 23  LLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMK 82

Query: 58  AVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE 117
             G+  +       +   +A     G   S +++K + ++   E   + R  L   L   
Sbjct: 83  KAGLLQTYYDLALPMGVNIADEK--GNILSTKNVKPENRFDNPE---INRNDLRAILLNS 137

Query: 118 LPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVG 177
           L + T+ +  ++V +E       L   +       ++I  +G  S V K++        G
Sbjct: 138 LENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETG 197

Query: 178 RSAIRGY-----SDFKGSHGFEPNFLQF-FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE 231
              I+        +  G              +G      P ++  +++  ++ +  + K 
Sbjct: 198 TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKN 257

Query: 232 LEDHS----AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRG 287
                      +  F+L +  D   + K +I  T              P E  W +    
Sbjct: 258 QTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVG---LATRIFPLEKPWKSKRPL 314

Query: 288 SVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGL 347
            + + GDA H M P  GQG  + L D ++L+  + +                   +E  +
Sbjct: 315 PITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG--------------KFNSIEEAV 360

Query: 348 KRYAKERRWRCFELISIAY 366
           K Y ++      E    + 
Sbjct: 361 KNYEQQMFIYGKEAQEEST 379

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  180 bits (460), Expect = 6e-53
 Identities = 84/414 (20%), Positives = 141/414 (34%), Gaps = 50/414 (12%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTVWTNAWKALDAV 59
           M    DI+I GAGI GL+ +L L++ GI    +LESS  +R  G    +   A +AL  +
Sbjct: 1   MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL 60

Query: 60  GIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRR----KLLLETLA 115
           G+G +L         +      SG         V+     +    + R     +LL  + 
Sbjct: 61  GLGPALAATAIPTHELRYI-DQSGATVWSEPRGVEAGNA-YPQYSIHRGELQMILLAAVR 118

Query: 116 KELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTK----VLIGCDGVNSIVAKWL-GF 170
           + L    +R    V  IEE     L+   DG          VL+G DG++S V   L   
Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD 178

Query: 171 KNPA-FVGRSAIRG---YSDFKGSHGFEPNFLQFFGK----GLRSGFIPCDDQTIYWFFT 222
           + P    G +  RG   +  F           + + +     + +         + W   
Sbjct: 179 QRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCM 238

Query: 223 WTSSSQDKELEDHS-------AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQ 275
             S++  +   +          ++  F           ++ ++ +     I+   +  R 
Sbjct: 239 VPSAAVGQLDNEADWNRDGRLEDVLPFFAD-WDLGWFDIRDLLTRN--QLILQYPMVDRD 295

Query: 276 PQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEED 335
           P    W    RG + + GDA H M P    G   A+ DGI LA      L     V    
Sbjct: 296 PLPH-W---GRGRITLLGDAAHLMYPMGANGASQAILDGIELAAA----LARNADVAA-- 345

Query: 336 EEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389
                      L+ Y + RR    ++I         + +        +   L +
Sbjct: 346 ----------ALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEA 389

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  169 bits (430), Expect = 9e-49
 Identities = 64/399 (16%), Positives = 109/399 (27%), Gaps = 63/399 (15%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLE-SSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           I +VG  I+GLT +L L   G+   V E S + L   G    V       L   G+   L
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE--L 65

Query: 66  RQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
                   S+     ++G+                + R      +   L +         
Sbjct: 66  DSISVPSSSMEYVDALTGERVGSVPA---------DWRFTSYDSIYGGLYELFGPERYHT 116

Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYS 185
           S  +V + +      +  +DGT  +   +IG DG  S+V K L    P + G    RG  
Sbjct: 117 SKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVL 176

Query: 186 DFKG-----SHGFEPNFLQFFGKG-------LRSG-FIPCDDQTIYWFFTWTSSSQDKEL 232
                     + F   F              +              W++         EL
Sbjct: 177 QPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDEL 236

Query: 233 ---------------EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQ 277
                             +    +    K   L    + ++       +    +      
Sbjct: 237 MTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFV---TVVADATV 293

Query: 278 EVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEE 337
           +        G V + GDA     P    GG  A +D   LA    +           D  
Sbjct: 294 DR-M---VHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN---------HD-- 338

Query: 338 EFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG 376
                +   L+ +   +  +    ++    + S  Q  G
Sbjct: 339 -----LRGSLQSWETRQLQQGHAYLNKVKKMASRLQHGG 372

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score =  108 bits (270), Expect = 2e-26
 Identities = 52/370 (14%), Positives = 102/370 (27%), Gaps = 59/370 (15%)

Query: 7   IVIVGAGIAGLTT--SLGLYRLGIRSMVLESSESLRVTGFAFTVWTNA-WKALDAVGIGN 63
           I+++GAG AGL     L   R      ++E ++   V G+   +         + +   +
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 64  SLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG-- 121
           +  + + Q               +E SL   G      +  V R+ L+  L  +  S   
Sbjct: 63  APERLNPQFLE-----DFKLVHHNEPSLMSTG----VLLCGVERRGLVHALRDKCRSQGI 113

Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
            IR+ S ++              +  +    +++  +GVN   A +     P        
Sbjct: 114 AIRFESPLLE-----------HGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNK 162

Query: 182 RGYSDFKGSHGFEPNFLQFFGKGLRSGFI----PCDDQTIYWFFTWTSSSQDKELEDHS- 236
             +    G+          F    +  FI       D    +    +  +  +       
Sbjct: 163 YIW---YGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMS 219

Query: 237 -AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDA 295
                ++V             V +             +             G + + GDA
Sbjct: 220 EEASAEYVAKVFQAELGGHGLVSQPGLGW------RNFMTLSHDRC---HDGKLVLLGDA 270

Query: 296 LHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERR 355
           L      IG G   A+    +L + +           E+            LKR+ +   
Sbjct: 271 LQSGHFSIGHGTTMAVVVAQLLVKALCT---------EDGVPA-------ALKRFEERAL 314

Query: 356 WRCFELISIA 365
                    A
Sbjct: 315 PLVQLFRGHA 324

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  102 bits (257), Expect = 2e-24
 Identities = 71/369 (19%), Positives = 129/369 (34%), Gaps = 53/369 (14%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           D++I G GI G   +  L R G R +V+E +   R    A  +     + ++A G+   +
Sbjct: 8   DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV 67

Query: 66  RQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEH-----EMRCVRRKLLLETLAKELPS 120
            ++  ++R  +            R                    +RR L+LE +     +
Sbjct: 68  TRRGGRVRHELEV---YHDGELLRYFNYSSVDARGYFILMPCESLRR-LVLEKID-GEAT 122

Query: 121 GTIRYSSQVVSIE--ESGHFKLLHLADGTILKTKVLIGCDGVNSIVAK-WLGFKNPAFVG 177
             + + +++ +++  E      + L DG +L+ +V++G DG+ S V +  L         
Sbjct: 123 VEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDI---DVER 179

Query: 178 R----SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK--- 230
           R      + G          E N L    +G  + F P          ++      +   
Sbjct: 180 RPYPSPMLVGTFALAPCVA-ERNRLYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMA 238

Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKT--PLDSIISSRLQYRQPQEVLWGNISR 286
               E     L++FV  +  +  A V         P+  +   R  Y      +      
Sbjct: 239 DTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDR--YWADNVAM------ 290

Query: 287 GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMG 346
                 GDA+H + P  GQG   A+ED   LA  ++ AL+    + +             
Sbjct: 291 -----LGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALED------------A 333

Query: 347 LKRYAKERR 355
           L  Y  ER 
Sbjct: 334 LAGYQAERF 342

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 97.2 bits (242), Expect = 2e-22
 Identities = 60/361 (16%), Positives = 122/361 (33%), Gaps = 35/361 (9%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV----WTNAWKALDAVGI 61
           D++++GAG AG   +  + + G +  ++E  +  R     F +         + LD  G 
Sbjct: 7   DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-----FVIGESLLPRCMEHLDEAGF 61

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE-LPS 120
            ++++ Q  Q +       + GK  ++ +   Q   G +    V R    +TLA E    
Sbjct: 62  LDAVKAQGFQQKFGAK--FVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQ 119

Query: 121 G-TIRYSSQVVSIEESGHFKLLHLAD----GTILKTKVLIGCDGVNSIVAKWLGFKNP-A 174
           G  + Y   V  I+  G   +  + D       ++ + +I   G   ++ +  G   P  
Sbjct: 120 GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSG 179

Query: 175 FVGRSAIRGY-SDFKGSHGFE----PNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD 229
           F  R  +  +  D K     E              +    IP  +      F    S  D
Sbjct: 180 FESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFD 239

Query: 230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSV 289
           +        ++  +          +    +         +   Y      L+G+      
Sbjct: 240 EYTGTPEERMRAMI-----ANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGD----GF 290

Query: 290 CVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKR 349
            + G+A   + P    G   A+E G    +   + LK ++      E++F + +  G+  
Sbjct: 291 VLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEE---VNWEKDFVEHMMQGIDT 347

Query: 350 Y 350
           +
Sbjct: 348 F 348

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 67/347 (19%), Positives = 119/347 (34%), Gaps = 44/347 (12%)

Query: 1   MESVE-DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAV 59
           M   E D+++VGAG+ GL+T++ L R G+R +V+E    L     A        + L   
Sbjct: 1   MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG 60

Query: 60  GIGNSLRQQ-----HQQLRSIVATPTISGK-------PSSERSLKVQGKYGEHEMRCVRR 107
           G+ + + +       Q    I    ++ G+          +     +           + 
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQD 120

Query: 108 KL--LLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL------ADGTI-LKTKVLIGCD 158
           KL  +L   A++   G IR+ ++++S  +        +       DG   L+   L+G D
Sbjct: 121 KLEPILLAQARKHG-GAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGAD 179

Query: 159 GVNSIVAKWLGFKNPAFVGRSAIRGY------SDFKGSHGFEPNFLQFFGKGLRSG-FIP 211
           G  S+V + LG       G   +         +D  G          +       G F P
Sbjct: 180 GNRSLVRESLGI---GRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGP 236

Query: 212 CDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRL 271
            D    +  F      + +  ED + +               +   ++   +   +    
Sbjct: 237 TDRPDRHTLFVEYDPDEGERPEDFTPQ----------RCVELIGLALDAPEVKPELVDIQ 286

Query: 272 QYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318
            +      +      G V +AGDA     P  G  G AA+ DG  LA
Sbjct: 287 GWE-MAARIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLA 332

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 93.8 bits (233), Expect = 6e-21
 Identities = 55/369 (14%), Positives = 112/369 (30%), Gaps = 44/369 (11%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV-----WTNAWKALDAVG 60
           D++++G G  G T +  +   G R ++LE     R       +               +G
Sbjct: 9   DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR-----HQIGESLLPATVHGICAMLG 63

Query: 61  IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE--L 118
           + + +++    ++                               V R    + L +    
Sbjct: 64  LTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSER 123

Query: 119 PSGTIRYSSQVVSIEESGHFKL---LHLADGTI--LKTKVLIGCDGVNSIVAKWLGFKNP 173
               +R   +V+ +   G   +       +G       + ++   G  + V++ +G +  
Sbjct: 124 KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVY 183

Query: 174 -AFVGRSAIRGYSDFKGSHGFEP----NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ 228
             F    A+ GY  F+           N L    +     +IP  D         +  + 
Sbjct: 184 SRFFQNVALYGY--FENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAA 241

Query: 229 DKELEDHSAELKQFV--LGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISR 286
           +   + H A L +++     + +  A    V      +  I     Y       W N   
Sbjct: 242 EAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTS--FWKN--- 296

Query: 287 GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMG 346
             + + GDA   + P    G   A    +++AR IN  L      GE  E+         
Sbjct: 297 -GMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLA-----GEMSEQRC------- 343

Query: 347 LKRYAKERR 355
            + + +  R
Sbjct: 344 FEEFERRYR 352

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 92.7 bits (230), Expect = 1e-20
 Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 35/363 (9%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAF----TVWTNAWKALDAVGI 61
            + I+G G AG    L L++LG    + E S   R     +    ++       L+ +G+
Sbjct: 25  KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR-----YRVGESLLPGTMSILNRLGL 79

Query: 62  GNSLRQQ-HQQLRSI--VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
              +  Q + +  S   +     +    S  + KV     +H +  V+R+   + L  E 
Sbjct: 80  QEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAV-QVKREEFDKLLLDEA 138

Query: 119 --PSGTIRYSSQVVSI--EESGHFKLLHLADGTI--LKTKVLIGCDGVNSIVAKWLGFKN 172
                T+   + V  +   +     L     G    +++  +I   G    +++ LG + 
Sbjct: 139 RSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQ 198

Query: 173 P-AFVGRSAIRGYSDFKGSHGFEPNF-LQFFGKGLRSG---FIPCDDQTIYWFFTWTSSS 227
              F    A+  Y  FK    FE +     +      G    IP  D           S 
Sbjct: 199 YDEFYRNFAVWSY--FKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSK 256

Query: 228 QDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRG 287
             +  E  +       L K       +    +   +  +      Y           S  
Sbjct: 257 SAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIV--QDWSYDTEV------FSAD 308

Query: 288 SVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGL 347
              + GDA     P   QG   A +  +  A  I+   +      +     +N+      
Sbjct: 309 RFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRH-GDEKDAVHAWYNRTYREAY 367

Query: 348 KRY 350
           ++Y
Sbjct: 368 EQY 370

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 52/338 (15%), Positives = 104/338 (30%), Gaps = 50/338 (14%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           D++I+G G  G+  +L L    +  +V+E ++         T+   + +     G+   +
Sbjct: 28  DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQI 87

Query: 66  RQQ--------HQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE 117
           R               + V    +   P      +   ++         +  L   LA+ 
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEA 147

Query: 118 LPSGTIRYSSQVVSIEESGHF---KLLHLADGTI--LKTKVLIGCDGVNSIVAKWLGFKN 172
           +    +R  S++ S E+        +  L  G    +  + L+ CDG +S   K LG   
Sbjct: 148 VG-ERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGI-- 204

Query: 173 PAFVGRSAIRGY-------SDFKGSHGFEPNFLQF-FGKGLRSGFIPCDDQTIYWFFTWT 224
                R   + +        + +   G       F          +   D    +  T  
Sbjct: 205 -DAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGLYRLTVG 263

Query: 225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSI--ISSRL--QYRQPQEVL 280
                K   D    +++  +    D   +V +        S   ++ R+   +       
Sbjct: 264 VDDASKSTMDSFELVRR-AVA--FDTEIEVLSD-------SEWHLTHRVADSFS------ 307

Query: 281 WGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318
                 G V + GDA H ++P  G G    +     L 
Sbjct: 308 -----AGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLG 340

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 64/333 (19%), Positives = 106/333 (31%), Gaps = 50/333 (15%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
           D+V+VG G  GL  +  L   G+ ++VLE          A  +     + LD  G+ +  
Sbjct: 51  DVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRF 110

Query: 66  RQQHQQLRSIVATPTISGKPSSER-------SLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
            +  Q  + +      +              +  V     E          LL   A+E 
Sbjct: 111 LEGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEA---------LLAEHAREA 161

Query: 119 PSGTIRYSSQVVSIEESGHFKLLHLADGT---ILKTKVLIGCDGVNSIVAKWLGFKNPAF 175
               I    +V  + +      + +A  +    ++ +  +GCDG  S V +        F
Sbjct: 162 G-AEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAAD---RF 217

Query: 176 VGRSAIRGY--SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQDKEL 232
            G  A                P   +    G+     P +      W  + T  S   + 
Sbjct: 218 PGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADE 277

Query: 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISR------ 286
              + E          DL A V  V         ++  + +       +G+ SR      
Sbjct: 278 GPVTLE----------DLGAAVARV---RGTPLTLTEPVSWLSR----FGDASRQAKRYR 320

Query: 287 -GSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318
            G V +AGDA H   P  GQG    L+D + L 
Sbjct: 321 SGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLG 353

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 64/323 (19%), Positives = 100/323 (30%), Gaps = 37/323 (11%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
            +++VGAG AGL  +  L   G+  MVLE                   +  D  GI  + 
Sbjct: 14  SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAF 73

Query: 66  RQQHQQLRSIVA-TPTISGKPSSERS--LKVQGKYGEHEMRCVRRKLLLETLAKELPSGT 122
                  +      P   G           V     E          +LE  A       
Sbjct: 74  GPVETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTES---------VLEEWALGRG-AE 123

Query: 123 IRYSSQVVSIEESGHFKLLHL--ADGT-ILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS 179
           +     V ++ + G   ++ +   DG   L T+ ++GCDG  S V K  GF    F G S
Sbjct: 124 LLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGF---DFPGTS 180

Query: 180 A-IRGYS-DFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237
           A    +  D +G         +    G+     P  D           +   +       
Sbjct: 181 ASREMFLADIRGCEITPRPIGETVPLGMV-MSAPLGDGVDRIIVCERGAPARRRTGPPPY 239

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRL--QYRQPQEVLWGNISRGSVCVAGDA 295
           +       +L          +  +       +R    YR           RG V +AGD+
Sbjct: 240 QEVAAAWQRLTGQDISHGEPVWVSAFG--DPARQVSAYR-----------RGRVLLAGDS 286

Query: 296 LHPMTPDIGQGGCAALEDGIVLA 318
            H   P  GQG   +++D + L 
Sbjct: 287 AHVHLPAGGQGMNVSVQDSVNLG 309

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 64/323 (19%), Positives = 101/323 (31%), Gaps = 37/323 (11%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
            +++VGAG AG+  +  L   G+  +VLE                   +  D  GI    
Sbjct: 13  AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRF 72

Query: 66  RQQHQQLRSIVATPTISGKPSSER---SLKVQGKYGEHEMRCVRRKLLLETLAKELPSGT 122
            +     +       I           +  V     E           LE  A  L    
Sbjct: 73  GEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTET---------HLEQWATGLG-AD 122

Query: 123 IRYSSQVVSIEESGHFKLLHLAD---GTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS 179
           IR   +V+S+ + G    + +        L+   L+GCDG  S V K  GF    F G +
Sbjct: 123 IRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGF---DFPGTA 179

Query: 180 AIRGY--SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237
           A      +D KG    +P  +     G      P              +   +     S 
Sbjct: 180 ATMEMYLADIKGV-ELQPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSW 238

Query: 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRL--QYRQPQEVLWGNISRGSVCVAGDA 295
                   +L          +  +      ++R   +YR           RG V +AGD+
Sbjct: 239 HEVADAWKRLTGDDIAHAEPVWVSAFG--NATRQVTEYR-----------RGRVILAGDS 285

Query: 296 LHPMTPDIGQGGCAALEDGIVLA 318
            H   P  GQG   +++D + L 
Sbjct: 286 AHIHLPAGGQGMNTSIQDAVNLG 308

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 63/362 (17%), Positives = 112/362 (30%), Gaps = 44/362 (12%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF--AFTVWTNAWKALDAVGIGN 63
            + I+GAG +GL     L++ GI +++LE      V G   A  +       L   G+  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 64  SLR---QQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
            +      H+ +    A              K    YG+ E+     + L+E       +
Sbjct: 64  RMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVT----RDLMEARE-ACGA 118

Query: 121 GTIRYSSQVVSIEESGHFKLLHL-ADGTI--LKTKVLIGCDGVNSIVAKWLGFKNPAFVG 177
            T+  +++V   +  G    +    DG    L    + GCDG + I  + +  +      
Sbjct: 119 TTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFE 178

Query: 178 RSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237
           R    G+           + L +               T   ++     S+  E      
Sbjct: 179 RVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWSDER 238

Query: 238 ELKQF--VLGKLHDLPAQVKAVIEKTPLDSIISSRL--QYRQPQEVLWGNISRGSVCVAG 293
              +    L             +EK+     + S +    +            G + +AG
Sbjct: 239 FWTELKARLPSEVAEKLVTGPSLEKSIAP--LRSFVVEPMQ-----------HGRLFLAG 285

Query: 294 DALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKE 353
           DA H + P   +G   A  D   L R + +A        E   E         L+RY+  
Sbjct: 286 DAAHIVPPTGAKGLNLAASDVSTLYRLLLKAY------REGRGE--------LLERYSAI 331

Query: 354 RR 355
             
Sbjct: 332 CL 333

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 77.2 bits (189), Expect = 1e-15
 Identities = 60/365 (16%), Positives = 96/365 (26%), Gaps = 41/365 (11%)

Query: 7   IVIVGAGIAGLTTSLGLYRLGIRSMVLE--SSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
           I IVGAG AGL   L L +  +   V      +         TV  NA      V +  +
Sbjct: 25  IGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVN 84

Query: 65  LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GT 122
                ++         + G     + ++  G       R V  +L    L + L +  G 
Sbjct: 85  EWP-SEEFGYFGHYYYVGG----PQPMRFYGDLKAP-SRAVDYRLYQPMLMRALEARGGK 138

Query: 123 IRYSSQVVSIEES--GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV---- 176
             Y +      E     + LL +  G     K +      NS   K              
Sbjct: 139 FCYDAVSAEDLEGLSEQYDLLVVCTGKYALGK-VFEKQSENSPFEKPQRALCVGLFKGIK 197

Query: 177 GRSAIRGYSDFKGSHG--FEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED 234
                     F   HG   E   L F G              +            +   D
Sbjct: 198 EAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLD 257

Query: 235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRL--QYRQPQEVLWGNISRGSVCVA 292
              E        + +     +  +  + LD I+   +   +R     L    +  ++   
Sbjct: 258 LMLEKLGKHHPSVAERIDPAEFDLANSSLD-ILQGGVVPAFRDGHATLN---NGKTIIGL 313

Query: 293 GDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAK 352
           GD    + P +GQG   A     +L   I             D              + +
Sbjct: 314 GDIQATVDPVLGQGANMASYAAWILGEEILAH-------SVYDLR---------FSEHLE 357

Query: 353 ERRWR 357
            RR  
Sbjct: 358 RRRQD 362

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 70/393 (17%), Positives = 128/393 (32%), Gaps = 62/393 (15%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTGFAFTVWTNAWKA---- 55
           + S  D++IVG G AGLT +  L     IR+ ++E  E     G A  +           
Sbjct: 29  VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIA-----CRTME 83

Query: 56  -LDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRR------- 107
             +A    +S+ ++   +  +         P     +   G+  + E             
Sbjct: 84  MFEAFEFADSILKEACWINDVT---FWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQ 140

Query: 108 ----KLLLETLAKELPSGTIRYSSQVVSIEESG------------HFKLLHLADGTILKT 151
                  LE +          Y+ +V+ ++                    H      ++ 
Sbjct: 141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQA 200

Query: 152 KVLIGCDGVNSIVAKWLGFKNPAFVGRSA--IRGYSDFKGSHGFEPNFLQFF--GKGLRS 207
           + ++GCDG  S V + +G +    VG SA    G  D      F     +     +    
Sbjct: 201 RYVVGCDGARSNVRRAIGRQ---LVGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGNV 257

Query: 208 GFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSI- 266
             IP +   +  F+         E         + ++     +    K  ++  P  S+ 
Sbjct: 258 LIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEVKNVPWWSVY 317

Query: 267 -ISSRL--QYRQPQEVLWGNISR-GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 322
            I  R+  +Y    + +    S    V +AGDA H  +P  GQG   +++D   L   + 
Sbjct: 318 EIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLA 377

Query: 323 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERR 355
             L+      +   E         L  Y+ ER+
Sbjct: 378 AVLR-----KQCAPEL--------LHTYSSERQ 397

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 64/387 (16%), Positives = 120/387 (31%), Gaps = 91/387 (23%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR----VTGFAFTVWTNAWKALDAVGI 61
           D++I+G G AG + +  L R G++ ++++S    R      G A +         D +G+
Sbjct: 8   DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS-----KAHFDKLGM 62

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE-LPS 120
                         +       K  S     V    GE     +   L  + + KE    
Sbjct: 63  PYPKG-------EELENKINGIKLYSPDMQTVWTVNGEGFE--LNAPLYNQRVLKEAQDR 113

Query: 121 G-TIRYSSQVVS-IEESGH-----FKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP 173
           G  I   +  +  I E G+            +   + +KV++   G +      L  + P
Sbjct: 114 GVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELP 173

Query: 174 AFVGRS------AIRGYSDFKGSHGFEPNFLQ-FFGKGLRSGFIPCDDQTIY-WFF---- 221
                       A R     K     + ++L+ F  +    G         Y W+F    
Sbjct: 174 ITEDLDDKDADVAYREVLLTKE-DIEDHDYLRIFIDQETSPGG--------YWWYFPKGK 224

Query: 222 --------TWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQY 273
                              E      K+++         +    ++K+ L     + +  
Sbjct: 225 NKVNVGLGIQGGMGYPSIHEY----YKKYL--------DKYAPDVDKSKLLVKGGALVPT 272

Query: 274 RQPQEVLWGNISRGSVCVAGDA---LHPMTPDIGQGGCAALEDGIVLARCINEALKTKQG 330
           R+P   +  N     + V GD+   ++P+    G G  +A+  G   A+ I  A +T   
Sbjct: 273 RRPLYTMAWN----GIIVIGDSGFTVNPVH---GGGKGSAMISGYCAAKAILSAFET--- 322

Query: 331 VGEEDEEEFNKRVEMGLKRYAKERRWR 357
            G+            GL        + 
Sbjct: 323 -GDFSAS--------GLWDM--NICYV 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 65/454 (14%), Positives = 134/454 (29%), Gaps = 161/454 (35%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV-TGFAFTV-WTNAWKALDA 58
           +   ++++I G   +G T            + L+   S +V     F + W N       
Sbjct: 147 LRPAKNVLIDGVLGSGKTW-----------VALDVCLSYKVQCKMDFKIFWLN------- 188

Query: 59  VGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
           +   NS     + L+ ++     +    S+ S  +  K   H ++   R+LL     K  
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKS---KPY 243

Query: 119 PSG------------------------TIRYSS--QVVSIEESGHFKLLHLADGTILKTK 152
            +                         T R+      +S   + H  L H +   +   +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDE 302

Query: 153 VLIGCDGVNSIVAKWLGFKN---PAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGF 209
           V        S++ K+L  +    P    R  +             P  L    + +R   
Sbjct: 303 VK-------SLLLKYLDCRPQDLP----REVLTT----------NPRRLSIIAESIR--- 338

Query: 210 IPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDL-PAQVKAVIEKT---PLDS 265
               D    W   W   + DK        L   +   L+ L PA+ + + ++    P  +
Sbjct: 339 ----DGLATWDN-WKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 266 IISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEAL 325
            I + L       ++W ++ +                         +  +V+ +    +L
Sbjct: 386 HIPTILL-----SLIWFDVIKS------------------------DVMVVVNKLHKYSL 416

Query: 326 KTKQGVGE---------------EDEEEFNKRVEMGLKRYAKERRWRCFELIS------- 363
             KQ                   E+E   ++ +   +  Y   + +   +LI        
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 364 ---IAYLVGSIQQSD-----GKI---LNFLRDKI 386
              I + + +I+  +       +     FL  KI
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 64/391 (16%), Positives = 123/391 (31%), Gaps = 86/391 (21%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGL-----YRLGIRSMVLE-----------------SSES 38
            ES  D++IVGAG AGL  +  L      +  ++  +++                 + ES
Sbjct: 5   SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 64

Query: 39  LRVTGFAFTVWTNA--------WKALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERS 90
           L+  G A  + + A        +   +   I  + R              +  +   ER 
Sbjct: 65  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERR 124

Query: 91  L----------------------------KVQGKYGEHEMRCVRRKLLLETLAKELPSGT 122
           +                            K +          +R     E+   +    T
Sbjct: 125 ILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKT 184

Query: 123 IRYSSQVVSIEESGHFKLLHLADGT------ILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
                +     +        L +G        +  K +IGCDG +S V + LGF+    +
Sbjct: 185 ENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFE---MI 241

Query: 177 GRSA--IRGYSDFKGSHGFEPNFLQFFGKGLRSGF---IPCDDQTIYWFFTWTSSSQDKE 231
           G     I G  D   +  F     +       SG    IP ++  + ++    + ++   
Sbjct: 242 GEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKGG 301

Query: 232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSI--ISSRL--QYRQPQEVLWGNISRG 287
             D +    + V+     +       +++    +   I  R+  ++ + + V        
Sbjct: 302 RVDRTKFTPEVVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVF------- 354

Query: 288 SVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318
              +AGDA H  +P  GQG   ++ D   L 
Sbjct: 355 ---IAGDACHTHSPKAGQGMNTSMMDTYNLG 382

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKAL 56
          M+SV D+V++G G +GL+    L R G+  ++L++       G     W +AW +L
Sbjct: 1  MDSV-DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA--SPGG----AWQHAWHSL 49

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
           +VIVGAG+AGL+ +  L   G +  VLE+SE  R  G   T 
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RPGGRVRTY 75

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVW 49
          M +  D+V+VG GI+G+  +  L+  G+  +VLE+ +  RV G  +T+ 
Sbjct: 1  MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYTLR 47

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-------SLRVTGFAF 46
          ++ +VG GI+GL  +  L   G  +++LESS        +  + G+  
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLV 65

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-------SLRVTGFAF------- 46
             S + + ++GAG++GL  +  L   G+   V E+         S+   G  +       
Sbjct: 10  HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTM 69

Query: 47  -TVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76
                +    +D++G+    +    Q +  +
Sbjct: 70  TESEGDVTFLIDSLGLREKQQFPLSQNKRYI 100

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV 41
           +V++G G AGL ++  L + G +  VLE+    R 
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEART--RP 46

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
          D++++G G  GLT +  L   G ++++LE+ +  R+ G +++   + +
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGGRSWSSNIDGY 86

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
          D+ IVGAG +GL  +  L + G+   V+E+ +  RV G  +T   +  
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDGA 52

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
          D ++VG G +GL  +  L   G + ++LE  E  R+ G A++ 
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE--RLGGRAYSR 43

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 5  EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
          + I+IVGAGIAGL     L R G    +LE++ + RV G   T 
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEAN-ANRVGGRIKTF 87

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 42/200 (21%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
           M+    + I+GAG AG+  ++ L   GI  +++    +                      
Sbjct: 2   MQHH-KVAIIGAGAAGIGMAITLKDFGITDVIILEKGT---------------------- 38

Query: 61  IGNSLRQ--QHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAK-- 116
           +G+S +   +  +  +   T    G P                   +  +   E L    
Sbjct: 39  VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVA 98

Query: 117 ---ELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP 173
              EL    I  ++ V +I     +  +     T      +    G  +        K P
Sbjct: 99  NHYELN---IFENTVVTNISADDAYYTIATTTETY-HADYIFVATGDYNF------PKKP 148

Query: 174 AFVG--RSAIRGYSDFKGSH 191
              G   S I  + +F    
Sbjct: 149 FKYGIHYSEIEDFDNFNKGQ 168

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 16/77 (20%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRS-MVLESS-------ESLRVTGFA------- 45
          +     I I+GAG AGL   + L + G     +LE +        S    G         
Sbjct: 3  ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIM 62

Query: 46 -FTVWTNAWKALDAVGI 61
              +    + +D  G 
Sbjct: 63 GVPSYDTIQEIMDRTGD 79

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSE-------SLRVTGFAF----- 46
          M S + +VIVG GI GL  +    R    +   +LE+ E       + R  GF       
Sbjct: 2  MSS-KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPD 60

Query: 47 ---TVWTNAWKALDAVGIGNSLRQQHQQLRSIVA 77
                      ++A+G+G  L + +     I+ 
Sbjct: 61 SYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD 94

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
            ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T     +
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNY 325

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTN 51
          D +IVG+G+ G   +  L +L  + +V+E      + G A+T    
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN--HIGGNAYTEDCE 46

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
            ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T     +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNY 154

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVW 49
          M S + +V++G+G+ GL+++L L R G    +L       V+   F   
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASP 51

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 29/115 (25%)

Query: 6   DIVIVGAGIAGLTT------SLGLYRLGIRSMVLESSE-------SLRVTGFAF------ 46
            +VI+G GI GL         +    L +   ++E+S        +++  G+        
Sbjct: 7   HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDS 66

Query: 47  --TVWTNAWKALDAVGIGNSLRQQHQQLRSIVA--------TPTISGKPSSERSL 91
                 +A + +  +G+ + L         ++            + G P+     
Sbjct: 67  FLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPF 121

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTVW 49
           ++I+GAGIAGL  +  L++ GI+  +VLE+ +  RV G   TV 
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTVT 52

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK 54
           I+IVGAG +G      L   G +  +++  +   + G ++    +   
Sbjct: 5  KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD--HIGGNSYDARDSETN 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	100.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.98
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.98
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.92
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.88
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.72
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.7
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.68
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.68
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.68
3dme_A	369	Conserved exported protein; structural genomics, P	99.67
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.67
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.67
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.67
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.66
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.65
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.62
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.61
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.61
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.59
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.57
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.54
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.53
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.53
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.53
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.5
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.48
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.48
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.47
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.46
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.46
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.46
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.46
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.45
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.44
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.44
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.43
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.43
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.42
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.42
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.42
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.39
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.39
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.39
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.38
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.38
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.37
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.36
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.34
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.33
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.32
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.32
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.32
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.32
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.31
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.31
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.3
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.3
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.29
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.28
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.28
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.28
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.28
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.26
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.25
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.25
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.25
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.24
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.24
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.23
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.23
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.22
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.22
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.19
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.18
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.13
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.13
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.12
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.1
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.09
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.09
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.06
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.06
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.05
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.05
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.04
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.03
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.02
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.01
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.01
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.99
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.99
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.98
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.97
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.95
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.93
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.92
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.9
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.9
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.89
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.88
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.88
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.86
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.86
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.85
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.85
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.83
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.82
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.82
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.82
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.82
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.81
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.81
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.81
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.8
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.79
4dna_A	463	Probable glutathione reductase; structural genomic	98.78
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.77
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.77
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.76
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.76
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.76
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.76
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.74
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.73
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.73
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.73
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.73
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.72
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.71
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.71
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.7
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.69
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.69
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.69
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.69
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.67
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.66
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.63
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.61
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.61
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.6
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.6
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.58
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.58
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.58
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.58
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.56
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.54
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.5
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.5
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.5
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.5
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.5
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.49
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.47
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.46
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.44
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.43
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.43
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.42
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.41
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.39
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.39
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.38
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.37
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.36
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.35
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.33
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.33
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.33
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.33
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.32
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.32
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.32
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.31
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.3
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.3
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.3
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.29
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.27
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.27
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.26
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.26
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.25
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.25
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.25
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.23
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.22
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.22
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.21
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.21
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.21
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.2
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.19
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.19
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.18
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.16
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.14
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.13
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.12
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.12
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.11
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.1
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.08
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.06
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.03
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.02
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.99
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.99
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.98
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.98
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.96
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.95
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.95
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.95
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.9
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.89
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.88
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.86
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.86
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.86
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.82
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.82
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.81
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.78
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.76
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.73
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.72
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.71
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.68
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.67
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.63
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.61
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.59
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.59
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.58
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.57
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.55
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.55
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.54
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.54
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.53
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.49
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.48
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.09
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.08
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.01
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.9
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.86
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.85
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.83
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.82
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.79
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.71
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.63
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.54
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.42
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.4
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.32
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.26
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.24
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.15
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.14
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.1
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.09
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.04
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.96
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.95
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.94
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.92
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.9
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.81
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.75
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.72
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.72
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.71
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.68
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.66
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.62
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.61
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.6
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.58
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.55
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.53
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.44
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.44
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.43
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.41
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.4
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.4
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.36
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.35
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.35
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.33
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.32
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.28
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.23
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.19
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.19
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.16
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.15
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.15
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.12
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.12
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.1
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.05
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.01
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.01
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.01
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.0
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.0
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.99
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.98
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.95
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.92
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.92
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.9
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.9
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.9
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.88
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.8
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.78
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.78
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.78
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.72
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.71
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.68
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.65
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.61
4dna_A	463	Probable glutathione reductase; structural genomic	94.61
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.59
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.57
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.56
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.54
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.53
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.52
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.49
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.48
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.45
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.45
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.44
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.37
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.34
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.33
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.33
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.32
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.29
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.28
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.27
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.24
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.23
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	94.21
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.21
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.18
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.18
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.14
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.11
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.11
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.1
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.09
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.03
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.93
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.93
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.88
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.87
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.86
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.86
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.86
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.85
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.84
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.81
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.76
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.73
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	93.69
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.68
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.67
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.66
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.65
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.64
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.62
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.56
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.56
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.54
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.47
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.44
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.41
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.35
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.34
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.33
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.32
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.32
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.32
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.31
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.3
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.23
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.16
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.15
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.13
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.09
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.03
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.02
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	93.02
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	92.95
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.95
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.94
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.92
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	92.89
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.88
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.86
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.83
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.73
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	92.68
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.56
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.56
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.52
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.51
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.48
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.46
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.45
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.45
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	92.44
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	92.42
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.31
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.2
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	92.11
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.08
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	92.06
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	91.28
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.93
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.9
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.88
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	91.81
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.81
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	91.74
3on5_A	362	BH1974 protein; structural genomics, joint center	91.73
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	91.72
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	91.69
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.66
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	91.65
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.64
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	91.54
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	91.42
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.41

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=2.6e-50  Score=380.68  Aligned_cols=366  Identities=23%  Similarity=0.372  Sum_probs=296.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.+++.+.+.|+++|+++.+...+.+.....+++...
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            46899999999999999999999999999999999888888999999999999999999999998888888887777654


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      +.....++............+.++|..|.+.|.+.+..++|+++++|++++.++++++|++.+|++++||+||+|||.+|
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            55444444332211112445689999999999998866899999999999999999999999999999999999999999


Q ss_pred             HHHhhh-CCC-CCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHH
Q 015303          163 IVAKWL-GFK-NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK  240 (409)
Q Consensus       163 ~vr~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (409)
                      .+|+.+ +.. .+.+.+..++.+.+..+........+..+++++.+++++|.++++.+|++....+..   ...+++...
T Consensus       182 ~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~  258 (407)
T 3rp8_A          182 ALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAG---LAEDRDTLR  258 (407)
T ss_dssp             SSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---CSCCTTTHH
T ss_pred             HHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcC---CCCCchhHH
Confidence            999998 765 444566677777766554444345567777888899999999999888887764432   233455667


Q ss_pred             HHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHH
Q 015303          241 QFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARC  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~  320 (409)
                      +.+.+.+..+.+.+..+++.........+......+.    ++|..+||+|||||||.++|++|||+|+||+||..|++.
T Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~  334 (407)
T 3rp8_A          259 ADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPF----SRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAV  334 (407)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCC----SCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCC----CceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHH
Confidence            8899999999999988887765444322322222222    477889999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303          321 INEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL  391 (409)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  391 (409)
                      |.+..                ....+|+.|+++|++++..++..+..+..+++..++...++|+.+++...
T Consensus       335 L~~~~----------------~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~  389 (407)
T 3rp8_A          335 FRQTR----------------DIAAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREET  389 (407)
T ss_dssp             HHSCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHSCC
T ss_pred             HhcCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHhhcc
Confidence            98521                45789999999999999999999999999999999999999999988543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=7.2e-43  Score=336.18  Aligned_cols=349  Identities=19%  Similarity=0.156  Sum_probs=252.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+++.++++|+++|+++++... .......+    
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~----   83 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHF----   83 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEE----
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccc----
Confidence            4578999999999999999999999999999999998888889999999999999999999888654 22221111    


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCc---EEeccEEEe
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGT---ILKTKVLIG  156 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---~~~ad~vV~  156 (409)
                      .+.   .+++..... .......+++..+.+.|.+.+  .+++|+++++|++++++++++++++.++.   +++||+||+
T Consensus        84 ~~~---~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVg  159 (500)
T 2qa1_A           84 GGL---PIDFGVLEG-AWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVG  159 (500)
T ss_dssp             TTE---EEEGGGSTT-GGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             cce---ecccccCCC-CCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEE
Confidence            111   122211111 112346789999999998866  36899999999999999999999988775   799999999


Q ss_pred             cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCC-cCccccc
Q 015303          157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSS-QDKELED  234 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~  234 (409)
                      |||.+|.+|+.++...+.. .....+.+.+.....   +..+..++.++++++++|.+++.+.+.+...... .......
T Consensus       160 ADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~  236 (500)
T 2qa1_A          160 CDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVEL---QPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPP  236 (500)
T ss_dssp             CCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCCC---CCEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----CC
T ss_pred             CCCcchHHHHHcCCCcCCCccceEEEEEEEEeCCC---CCceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCC
Confidence            9999999999998876543 233444555544322   1224445566778899999988765554432221 1111345


Q ss_pred             ChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                      +.+++.+.+.+.+....          ......+... + .......++|..+||+|+|||||.++|++|||+|+||+||
T Consensus       237 ~~~~~~~~l~~~~~~~~----------~~~~~~~~~~-~-~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA  304 (500)
T 2qa1_A          237 SWHEVADAWKRLTGDDI----------AHAEPVWVSA-F-GNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDA  304 (500)
T ss_dssp             CHHHHHHHHHHHHSCCC----------TTSEEEEEEE-E-ECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCC----------CccceeEEEE-e-ccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHH
Confidence            66666666666554110          0111111111 1 1112234577889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      .+|++.|...+++.             ..+.+|+.|+++|++++..++..+..+..++.. ++....+|+.++.
T Consensus       305 ~~La~~La~~~~g~-------------~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~  364 (500)
T 2qa1_A          305 VNLGWKLGAVVNGT-------------ATEELLDSYHSERHAVGKRLLMNTQAQGLLFLS-GPEVQPLRDVLTE  364 (500)
T ss_dssp             HHHHHHHHHHHTTS-------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            99999999988764             347899999999999999999999988888874 5556677776543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=9e-44  Score=336.77  Aligned_cols=349  Identities=21%  Similarity=0.260  Sum_probs=240.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--ccceeccccHHHHHHHcCchhHHHhcc---ccccceeeee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--GFAFTVWTNAWKALDAVGIGNSLRQQH---QQLRSIVATP   79 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~~~~~~~~~   79 (409)
                      ++|+||||||+||++|+.|+++|++|+|+||++.+...  +.++.+++++++.|+++|+.+.+....   ........+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            58999999999999999999999999999999887544  567888999999999999877664321   1111111111


Q ss_pred             cCCCCccccc-ccc-cccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEe
Q 015303           80 TISGKPSSER-SLK-VQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        80 ~~~~~~~~~~-~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~  156 (409)
                      .......... ... ............+.|..|.+.|.+.++ .+|+++++|+++++.++ .++|++.||++++||+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~-~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLA-NTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVG  160 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCT-TTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhcc-ceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEE
Confidence            1111111100 000 011111233457899999999998874 57999999999987654 5999999999999999999


Q ss_pred             cCCCchHHHhhhCCCCCc-ccceeeEEEeecCCCCC------CC-CCceeeee--cCCcEEE---EEecC----------
Q 015303          157 CDGVNSIVAKWLGFKNPA-FVGRSAIRGYSDFKGSH------GF-EPNFLQFF--GKGLRSG---FIPCD----------  213 (409)
Q Consensus       157 AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~------~~-~~~~~~~~--~~~~~~~---~~p~~----------  213 (409)
                      |||.+|.+|+.++..... +.+...+.+........      .+ ......+.  .++..+.   ..|..          
T Consensus       161 ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T 4hb9_A          161 ADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMWRAPVNIHVEASLAEI  240 (412)
T ss_dssp             CCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEEEEESCTTSCGGGCCE
T ss_pred             CCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeeeecCCceeEEEeccCC
Confidence            999999999999665443 35555656555432210      00 00011111  1111111   11111          


Q ss_pred             CCeEEEEEEecCCCc-CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEe
Q 015303          214 DQTIYWFFTWTSSSQ-DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVA  292 (409)
Q Consensus       214 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lv  292 (409)
                      ++...|.+....+.. ......+.+.+.+.+.+.+..|.+.+..+++......+..+......+.    .+|..+||+|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~grv~Li  316 (412)
T 4hb9_A          241 DNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQSDMENISPLHLRSMPHL----LPWKSSTVTLL  316 (412)
T ss_dssp             EEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTSCTTCCEEEEEEECCCC----CCCCCCSEEEC
T ss_pred             CceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHhcccceeccchhcccccc----ccccccCEEEE
Confidence            112233333322222 1224556778888999999999999999998877666655555444333    26788999999


Q ss_pred             ccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhe
Q 015303          293 GDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGS  370 (409)
Q Consensus       293 GDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~  370 (409)
                      |||||.++|++|||+|+||+||..|+++|.....+.            +.+..+|+.|+++|++++..++..|.....
T Consensus       317 GDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~------------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~  382 (412)
T 4hb9_A          317 GDAIHNMTPMTGSGANTALRDALLLTQKLASVASGH------------EELVKAISDYEQQMRAYANEIVGISLRSAQ  382 (412)
T ss_dssp             THHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTS------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCC------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988763            366889999999999999999999876654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=9.5e-43  Score=335.26  Aligned_cols=348  Identities=18%  Similarity=0.140  Sum_probs=253.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+++.++++|+++|+++.+... .+.....+    .
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~----~   85 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGHF----G   85 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEEE----T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-ccccccee----c
Confidence            468999999999999999999999999999999998888889999999999999999999887654 22221111    1


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCc---EEeccEEEec
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGT---ILKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~---~~~ad~vV~A  157 (409)
                      +.   .+++..... .......+++..+.+.|.+.+.  +++|+++++|++++++++++++++.++.   +++||+||+|
T Consensus        86 ~~---~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgA  161 (499)
T 2qa2_A           86 GR---PVDFGVLEG-AHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGC  161 (499)
T ss_dssp             TE---EEEGGGSTT-CCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ce---ecccccCCC-CCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEc
Confidence            11   122221111 1123467899999999988663  6899999999999999889999998875   7999999999


Q ss_pred             CCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCC-cCcccccC
Q 015303          158 DGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSS-QDKELEDH  235 (409)
Q Consensus       158 dG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~  235 (409)
                      ||.+|.+|+.++...+.. .....+.+.+.....+   ..+..++.++++++++|.+++.+.+.+...... .......+
T Consensus       162 DG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~  238 (499)
T 2qa2_A          162 DGGRSTVRKAAGFDFPGTSASREMFLADIRGCEIT---PRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPP  238 (499)
T ss_dssp             CCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCCC---CEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCC
T ss_pred             cCcccHHHHHcCCCCCCCCCccEEEEEEEEECCCC---cceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCC
Confidence            999999999998876543 2334445555443221   224445566778899999988765555442221 11113456


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~  315 (409)
                      .+++.+.+.+.+....          ......+.. .+ .......++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus       239 ~~~~~~~l~~~~~~~~----------~~~~~~~~~-~~-~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~  306 (499)
T 2qa2_A          239 YQEVAAAWQRLTGQDI----------SHGEPVWVS-AF-GDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSV  306 (499)
T ss_dssp             HHHHHHHHHHHHSCCC----------TTCEEEEEE-EE-CCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCC----------CccceeEEE-EE-eCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHH
Confidence            6777776666554110          011111111 11 11122345778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      +|++.|...+++.             ..+.+|+.|+++|++++..++..+..+..++.. ++....+|+.++.
T Consensus       307 ~La~~La~~l~g~-------------~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~  365 (499)
T 2qa2_A          307 NLGWKLAAVVSGR-------------APAGLLDTYHEERHPVGRRLLMNTQAQGMLFLS-GDEMQPLRDVLSE  365 (499)
T ss_dssp             HHHHHHHHHHTTS-------------SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            9999999988754             346899999999999999999999988888874 5556677776653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.6e-44  Score=336.07  Aligned_cols=356  Identities=17%  Similarity=0.201  Sum_probs=259.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+|+++.+...+++..+++.+.+.++++|+++.+.....+.....+++. .+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~g   84 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH-DG   84 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE-TT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC-CC
Confidence            48999999999999999999999999999999988777889999999999999999999988776666666655543 23


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeE--EEEecCCcEEeccEEEecC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFK--LLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v--~v~~~~g~~~~ad~vV~Ad  158 (409)
                      .....++.....  .....+.++|..|.+.|.+.+.   +++++++++|++++.+++++  .|++.+|+++++|+||+||
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad  162 (399)
T 2x3n_A           85 ELLRYFNYSSVD--ARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD  162 (399)
T ss_dssp             EEEEEEETTSSC--GGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred             CEEEecchHHhc--ccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence            222222222111  1123467899999999998763   68999999999999988888  8999999899999999999


Q ss_pred             CCchHHHhhhCCCCC-c--ccce--eeEEEeecCCCCCCCCCceeeeecC-CcEEEEEecCCCeEEEEEEecCCCcCcc-
Q 015303          159 GVNSIVAKWLGFKNP-A--FVGR--SAIRGYSDFKGSHGFEPNFLQFFGK-GLRSGFIPCDDQTIYWFFTWTSSSQDKE-  231 (409)
Q Consensus       159 G~~S~vr~~l~~~~~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~-  231 (409)
                      |.+|.+|+.++.... .  +.+.  .++.+.+....+.  .  . .++.+ +.+++++|.+++.+.|.+.+..+..... 
T Consensus       163 G~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  237 (399)
T 2x3n_A          163 GIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAER--N--R-LYVDSQGGLAYFYPIGFDRARLVVSFPREEARELM  237 (399)
T ss_dssp             CTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHHHC--E--E-EEECTTSCEEEEEEETTTEEEEEEECCHHHHHHHH
T ss_pred             CCChHHHHHhCCCccccCCCCCCceEEEEEEecCCCCC--c--c-EEEcCCCcEEEEEEcCCCEEEEEEEeCcccccccc
Confidence            999999999977543 2  3444  5555544322111  1  3 55566 7789999999988877775432211000 


Q ss_pred             cccChHHHHHHHHHHhCCCChHHH-HHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303          232 LEDHSAELKQFVLGKLHDLPAQVK-AVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA  310 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a  310 (409)
                      ...+.+.    +.+.+..+.+.+. ..++......+..+++...    ...++|..+||+|+|||||.++|++|||+|+|
T Consensus       238 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~a  309 (399)
T 2x3n_A          238 ADTRGES----LRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGY----LNLDRYWADNVAMLGDAIHNVHPITGQGMNLA  309 (399)
T ss_dssp             HSTTSHH----HHHHHHTTCCGGGHHHHHTCCCSTTCEECCCCC----EECSCSEETTEEECGGGTEECCGGGCCHHHHH
T ss_pred             ccCCHHH----HHHHHhhcCCcchhhHHhcCCccceEEechhhc----ccccccccCcEEEEechhccCCCcccccHHHH
Confidence            0123333    4444445666552 2334332113333444331    12336778999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      |+||..|++.|.+.++..            ++...+|+.|+++|++++..++..+..+..+++..++...++ +.+++
T Consensus       310 l~da~~La~~L~~~~~~~------------~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~  374 (399)
T 2x3n_A          310 IEDASALADALDLALRDA------------CALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVF-DTALQ  374 (399)
T ss_dssp             HHHHHHHHHHHHHHHTTS------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HC---
T ss_pred             HHHHHHHHHHHHhhhccc------------chHHHHHHHHHHHhccHHHHHHHHHHHhhhhhcccCchHHHH-HHHHh
Confidence            999999999999887631            145789999999999999999999999999999888888888 88776

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=2.6e-42  Score=324.76  Aligned_cols=354  Identities=18%  Similarity=0.165  Sum_probs=252.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC--cccceeccc-cHHHHHHHcCchhHHHhccccccceeee
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV--TGFAFTVWT-NAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      ++++||+||||||+|+++|+.|++.|++|+|+||.+.+..  .+.++.+.+ .+.+.|+.+|+++.+.....+... .++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~  102 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIA  102 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEE
Confidence            4568999999999999999999999999999999876543  344555554 568999999999998876655544 333


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      + ..+........+...   ......+.|..|.+.|.+.+++++++++++|++++.++++++|++.+|++++||+||+||
T Consensus       103 ~-~~g~~~~~~~~~~~~---~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  178 (398)
T 2xdo_A          103 D-EKGNILSTKNVKPEN---RFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILAN  178 (398)
T ss_dssp             C-SSSEEEEECCCGGGT---TSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECS
T ss_pred             C-CCCCchhhccccccC---CCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECC
Confidence            3 233322111001111   122336899999999999887789999999999999888899999999889999999999


Q ss_pred             CCchHHHhhhCCCCCcccceeeEEEeecCCCC-CC-----CCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcc-
Q 015303          159 GVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HG-----FEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE-  231 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-  231 (409)
                      |.+|.+|+.++...+.+.+..++.+.+..... .+     .......+++++..+..+|.+++...|++.+..+..... 
T Consensus       179 G~~S~vR~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  258 (398)
T 2xdo_A          179 GGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQ  258 (398)
T ss_dssp             CTTCSCCTTTCCCCCEEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEEEECCTTC---
T ss_pred             CcchhHHhhccCCCceEcceEEEEEEeCchhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEEEecCcccccc
Confidence            99999999987655555566666655432110 00     011223444666667778998888777766543322110 


Q ss_pred             ---cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCC-C--cEEEeccCcCCCCCCccc
Q 015303          232 ---LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISR-G--SVCVAGDALHPMTPDIGQ  305 (409)
Q Consensus       232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~v~lvGDAA~~~~P~~g~  305 (409)
                         ...+++...+.+.+.+..+.+.+.+++...  ..+..++.....+.    .+|.. +  ||+|+|||||.++|++||
T Consensus       259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~rv~LiGDAAh~~~P~~Gq  332 (398)
T 2xdo_A          259 TQVDFQNRNSVVDFLLKEFSDWDERYKELIHTT--LSFVGLATRIFPLE----KPWKSKRPLPITMIGDAAHLMPPFAGQ  332 (398)
T ss_dssp             CCSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHC--SCCEEEEEEECCCC----SCCCSCCSSCEEECTHHHHCCCCTTSC
T ss_pred             cccCcCCHHHHHHHHHHHHcCCChHHHHHHhCc--ccceeeeeEeccCC----CCcccCCCccEEEEeehhccCCCccCc
Confidence               124567778888888888888888887652  23333343332221    14443 4  899999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhh-HHHHHHHHHHhhhhhHHHHHHHHHHhhe-eeccCchhHHH
Q 015303          306 GGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKR-VEMGLKRYAKERRWRCFELISIAYLVGS-IQQSDGKILNF  381 (409)
Q Consensus       306 G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Y~~~r~~~~~~~~~~s~~~~~-~~~~~~~~~~~  381 (409)
                      |+|+||+||..|+++|...  +.             + ...+|+.|+++|++++..++..+..+.. ++....+...+
T Consensus       333 G~n~ai~Da~~La~~L~~~--~~-------------~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~  395 (398)
T 2xdo_A          333 GVNSGLVDALILSDNLADG--KF-------------NSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTFQQL  395 (398)
T ss_dssp             SHHHHHHHHHHHHHHHHSC--CS-------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHHHhc--cC-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence            9999999999999999873  11             3 6789999999999999999988876654 45555554443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=2.7e-42  Score=324.51  Aligned_cols=337  Identities=18%  Similarity=0.198  Sum_probs=244.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+|+.+.+ ...++++.+++.+.+.|+.+|+.+  .....+.....+++..
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~   81 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYVDAL   81 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEEETT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEEecC
Confidence            4689999999999999999999999999999998775 445778889999999999999877  4445555555555431


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+........         ....+.+..+.+.|.+.+++++++++++|++++.++++++|++.+|+++++|+||+|||.+
T Consensus        82 ~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  152 (397)
T 2vou_A           82 TGERVGSVPA---------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA  152 (397)
T ss_dssp             TCCEEEEEEC---------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred             CCCccccccC---------cccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcc
Confidence            3333222111         1124778899999998888899999999999999888999999999999999999999999


Q ss_pred             hHHHhhhCCCC-CcccceeeEEEeecCCCCCC-----CCCceeeeecCCcEEEEEecCCC------eEEEEEEecCCCcC
Q 015303          162 SIVAKWLGFKN-PAFVGRSAIRGYSDFKGSHG-----FEPNFLQFFGKGLRSGFIPCDDQ------TIYWFFTWTSSSQD  229 (409)
Q Consensus       162 S~vr~~l~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~  229 (409)
                      |.+|+.++ .. +.+.+..++.+.+.......     ....+..+.+++..+.++|++++      .+.|+.....+...
T Consensus       153 S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  231 (397)
T 2vou_A          153 SVVRKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGP  231 (397)
T ss_dssp             CHHHHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTH
T ss_pred             hhHHHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecCCCEEEEEECCCCCCccceeEEEEEEecCCCcc
Confidence            99999998 43 33345556666655322111     01234455577777888888753      44444433322210


Q ss_pred             --ccc---------------ccChHHHHHHHHHHhC-CCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEE
Q 015303          230 --KEL---------------EDHSAELKQFVLGKLH-DLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCV  291 (409)
Q Consensus       230 --~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l  291 (409)
                        ...               ....+...+.+.+.+. .+++ +.++++....  ...+++...     ..++|..+||+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-----~~~~~~~grv~L  303 (397)
T 2vou_A          232 DLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLNASS--PFVTVVADA-----TVDRMVHGRVLL  303 (397)
T ss_dssp             HHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH-HHHHHHHCSS--CEEEEEEEB-----CCSCSEETTEEE
T ss_pred             chhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH-HHHHHhccCC--cceeeeeee-----cCCceecCcEEE
Confidence              000               0002333455555554 5666 7777765422  223343322     123678899999


Q ss_pred             eccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303          292 AGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSI  371 (409)
Q Consensus       292 vGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~  371 (409)
                      +|||||.++|++|||+|+||+||..||++|..   ..             ....+|+.|+++|++++..++..+..+..+
T Consensus       304 iGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~-------------~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~  367 (397)
T 2vou_A          304 IGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NH-------------DLRGSLQSWETRQLQQGHAYLNKVKKMASR  367 (397)
T ss_dssp             CGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CS-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccccCCcchhhHHHHHHHHHHHHHHHhc---CC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999975   11             457999999999999999999999998888


Q ss_pred             eccC
Q 015303          372 QQSD  375 (409)
Q Consensus       372 ~~~~  375 (409)
                      ++.+
T Consensus       368 ~~~~  371 (397)
T 2vou_A          368 LQHG  371 (397)
T ss_dssp             HTTT
T ss_pred             Hhcc
Confidence            7754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=7e-43  Score=340.37  Aligned_cols=352  Identities=18%  Similarity=0.112  Sum_probs=247.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+++.++++|+++|+++.+...+....... +   .+
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~-~---~~  124 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLP-F---AG  124 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCC-B---TT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCce-e---CC
Confidence            5799999999999999999999999999999999888889999999999999999999999877665433211 1   11


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEe--cCC-cEEeccEEEecC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHL--ADG-TILKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~--~~g-~~~~ad~vV~Ad  158 (409)
                      .....+++...... ....+.+.+..+.+.|.+.+.  +++|+++++|+++++++++++|++  .+| .+++||+||+||
T Consensus       125 ~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          125 IFTQGLDFGLVDTR-HPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCD  203 (570)
T ss_dssp             BCTTCCBGGGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECS
T ss_pred             cccccccccccCCC-CCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcC
Confidence            11112222222111 223457899999999988663  789999999999999988888888  677 689999999999


Q ss_pred             CCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEE-EecCCCeE-EEEEEecCCCc-Cccccc
Q 015303          159 GVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGF-IPCDDQTI-YWFFTWTSSSQ-DKELED  234 (409)
Q Consensus       159 G~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~-~~~~~~~~~~~-~~~~~~  234 (409)
                      |.+|.+|+.+++..+.. +....+...+.....+   ..+...+.+.+++++ +|++++.. .+++....... ......
T Consensus       204 G~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~  280 (570)
T 3fmw_A          204 GGRSTVRRLAADRFPGTEATVRALIGYVTTPERE---VPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPV  280 (570)
T ss_dssp             CSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS---SCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCC
T ss_pred             CCCchHHHHcCCCCccceeeeEEEEEEEEecCCC---cceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCC
Confidence            99999999998876654 3444445544443332   122222334445555 79988865 45554443221 111334


Q ss_pred             ChHHHHHHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303          235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED  313 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~  313 (409)
                      +.+++.+.+.+.+.   ..    +...... ....++..     ....++|..+||+|+|||||.++|++|||+|+||+|
T Consensus       281 ~~~~~~~~l~~~~~---~~----~~~~~~~~~~~~~~~~-----~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~D  348 (570)
T 3fmw_A          281 TLEDLGAAVARVRG---TP----LTLTEPVSWLSRFGDA-----SRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQD  348 (570)
T ss_dssp             CHHHHHHHTTSSSS---CC----CCCCSCCEEEEEECCC-----CEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh---cc----cccceeeeeeEEeecc-----cccccccccCCEEEEEecceecCCCcCcCHhHHHHH
Confidence            44444443333221   11    1111111 22223322     223457788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303          314 GIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA  388 (409)
Q Consensus       314 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  388 (409)
                      |.+|++.|...+++.             ....+|+.|+++|++++..++..+..+..+++...+....+|+.++.
T Consensus       349 A~~La~~La~~~~g~-------------~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~lR~~~~~  410 (570)
T 3fmw_A          349 AVNLGWKLAARVRGW-------------GSEELLDTYHDERHPVAERVLLNTRAQLALMRPDEQHTTPLRGFVEE  410 (570)
T ss_dssp             HHHHHHHHHHHHHSC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            999999999988754             44789999999999999999999999999998866658889988875

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=1.7e-41  Score=320.44  Aligned_cols=339  Identities=25%  Similarity=0.316  Sum_probs=236.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      ||.++||+||||||+|+++|+.|+++|++ |+|+||.+.+...++++.+++.+++.|+.+|+++.+...+.+...+.+++
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~   80 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID   80 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc
Confidence            77789999999999999999999999999 99999998888788999999999999999999999988777666665554


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC---C-ceEEeCCeEEEEEEeCCeEEEEecC---C--cEEe
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---S-GTIRYSSQVVSIEESGHFKLLHLAD---G--TILK  150 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~i~~~~~~v~v~~~~---g--~~~~  150 (409)
                      . .+........... .........+.|..|.+.|.+.+.   + ++++++++|++++. ++++++++.+   |  .+++
T Consensus        81 ~-~g~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           81 Q-SGATVWSEPRGVE-AGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG  157 (410)
T ss_dssp             T-TSCEEEEEECGGG-GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred             C-CCCEEeeccCCcc-ccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence            3 3332222111100 111223467899999999988762   3 58999999999988 6778888875   6  4799


Q ss_pred             ccEEEecCCCchHHHhhhCCCC--CcccceeeEEEeecCCCCCCCCCceeeeec--CCcEEEEEecCC-----C--eEEE
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKN--PAFVGRSAIRGYSDFKGSHGFEPNFLQFFG--KGLRSGFIPCDD-----Q--TIYW  219 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~-----~--~~~~  219 (409)
                      ||+||+|||.+|.+|+.++...  +.+.+...+.+........  ......+++  .+.+++++|+++     +  .+.|
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w  235 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFL--DGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNW  235 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCT--TSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEE
T ss_pred             cCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeeccccccc--CCCeEEEecCCCCcEEEEEecCCcccCCCCcEEEE
Confidence            9999999999999999986543  2334445555554432211  122233333  355788899863     2  4556


Q ss_pred             EEEecCCC---cCcccccChHHHHHHHHHHhCCCCh---HHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEec
Q 015303          220 FFTWTSSS---QDKELEDHSAELKQFVLGKLHDLPA---QVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAG  293 (409)
Q Consensus       220 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG  293 (409)
                      .+......   .............+.+++.+..+..   .+..++...  ..+..+++....+    .++|..+||+|||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~----~~~~~~grv~LvG  309 (410)
T 3c96_A          236 VCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRN--QLILQYPMVDRDP----LPHWGRGRITLLG  309 (410)
T ss_dssp             EEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHHHHTC--SEEEEEEEEECCC----CSCCCBTTEEECT
T ss_pred             EEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHHHhcC--cccceeecccCCC----ccccccCCEEEEe
Confidence            55443210   0000011111113455666665543   245556544  2334444433322    2367889999999


Q ss_pred             cCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 015303          294 DALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAY  366 (409)
Q Consensus       294 DAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~  366 (409)
                      ||||.++|++|||+|+||+||..|++.|...   .             ....+|+.|+++|++++..++..++
T Consensus       310 DAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~-------------~~~~~L~~Ye~~r~~~~~~~~~~s~  366 (410)
T 3c96_A          310 DAAHLMYPMGANGASQAILDGIELAAALARN---A-------------DVAAALREYEEARRPTANKIILANR  366 (410)
T ss_dssp             HHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---S-------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccchhHHHHHHHHHHHHHHHhcc---C-------------CHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999872   1             4578999999999999999988876

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=3e-41  Score=329.11  Aligned_cols=355  Identities=17%  Similarity=0.170  Sum_probs=242.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccc---eeeeec
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRS---IVATPT   80 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~---~~~~~~   80 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+++.+++.|+++|+.+.+.+.+.+...   ..+...
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            47999999999999999999999999999999988888888999999999999999999999887665532   222222


Q ss_pred             CCCCcccccccccccc-----cCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---C--cEEe
Q 015303           81 ISGKPSSERSLKVQGK-----YGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---G--TILK  150 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~-----~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g--~~~~  150 (409)
                      ..+..+..+.+.....     ........+.+..+.+.|.+.+... |+++++|+++++++++|++++.+   |  .+++
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~  184 (549)
T 2r0c_A          106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRDDHVRATITDLRTGATRAVH  184 (549)
T ss_dssp             BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECSSCEEEEEEETTTCCEEEEE
T ss_pred             CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEE
Confidence            2333322333221110     1123446789999999999887555 99999999999988888888876   6  3799


Q ss_pred             ccEEEecCCCchHHHhhhCCCCCccc-ceeeEEEeecCCCCC---CCCC-ceeeeecCC-cEEEEEecCCCeEEEEEEec
Q 015303          151 TKVLIGCDGVNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSH---GFEP-NFLQFFGKG-LRSGFIPCDDQTIYWFFTWT  224 (409)
Q Consensus       151 ad~vV~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~  224 (409)
                      ||+||+|||.+|.+|+.++...+... ....+...+..+...   .... .+..++.++ ..++++|.+++.. |.+...
T Consensus       185 a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~-~~~~~~  263 (549)
T 2r0c_A          185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGL-YRLTVG  263 (549)
T ss_dssp             EEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSSE-EEEEEE
T ss_pred             eCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCcE-EEEEec
Confidence            99999999999999999988765432 223333334332110   0011 222333444 6778899976432 444332


Q ss_pred             CCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcc
Q 015303          225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIG  304 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g  304 (409)
                      .+..   . .+.+++.+.+.+.+.. ...       ..+.....++..     ....++|..+||+|+|||||.++|++|
T Consensus       264 ~~~~---~-~~~~~~~~~l~~~~~~-~~~-------~~~~~~~~~~~~-----~~~a~~~~~grv~L~GDAAH~~~P~~G  326 (549)
T 2r0c_A          264 VDDA---S-KSTMDSFELVRRAVAF-DTE-------IEVLSDSEWHLT-----HRVADSFSAGRVFLTGDAAHTLSPSGG  326 (549)
T ss_dssp             CSTT---C-CSCCCHHHHHHHHBCS-CCC-------CEEEEEEEEEEC-----CEECSCSEETTEEECGGGTEECCCGGG
T ss_pred             CCCC---C-CCHHHHHHHHHHHhCC-CCc-------eeEEEEecchhH-----hhhHHhhcCCcEEEEccccccCCCccC
Confidence            2111   1 3445556666665542 100       001111122221     223457778999999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC---------
Q 015303          305 QGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD---------  375 (409)
Q Consensus       305 ~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~---------  375 (409)
                      ||||+||+||.+|+++|...+++.             ..+.+|+.|+++|++++..++..+..+..++...         
T Consensus       327 qG~n~gi~DA~~La~~La~~l~g~-------------a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~  393 (549)
T 2r0c_A          327 FGMNTGIGSAADLGWKLAATLRGW-------------AGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDD  393 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC-------------SCTTTTHHHHHHHHHHHHHHHHC----------CCCCTTTTCC
T ss_pred             CccccccHHHHHHHHHHHHHHcCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            999999999999999999988764             3357899999999999999999999988887642         


Q ss_pred             chhHHHHHHHHHHHH
Q 015303          376 GKILNFLRDKILASF  390 (409)
Q Consensus       376 ~~~~~~~r~~~~~~~  390 (409)
                      ++....+|+.+.+.+
T Consensus       394 ~~~~~~~R~~~~~~~  408 (549)
T 2r0c_A          394 GPRGERIRAAVAEKL  408 (549)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHH
Confidence            566777787776644

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=8.2e-41  Score=326.17  Aligned_cols=348  Identities=20%  Similarity=0.209  Sum_probs=246.4

Q ss_pred             CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccccee---
Q 015303            1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV---   76 (409)
Q Consensus         1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~---   76 (409)
                      |+ .++||+||||||+|+++|+.|+++|++|+||||++.+...+++..+++.++++|+++|+++.+...+.+.....   
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCE
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCccccccee
Confidence            44 46899999999999999999999999999999999888888999999999999999999999988776554331   


Q ss_pred             --eeecCCCCccccc--cccc----ccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC----eEEEE
Q 015303           77 --ATPTISGKPSSER--SLKV----QGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH----FKLLH  142 (409)
Q Consensus        77 --~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~----~v~v~  142 (409)
                        ......+..+..+  .+..    .....+.....+++..|.+.|.+.+  .+++++++++|++++++++    +++++
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~  160 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTAR  160 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEE
T ss_pred             eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEE
Confidence              2222233322211  1111    0111133356789999999998876  3689999999999999988    89999


Q ss_pred             ecCC---cEEeccEEEecCCCchHHHhhhCCCCCccccee-eEEEeecCCCCC--CCCC-ceeeeecCCcEEEEEecCCC
Q 015303          143 LADG---TILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS-AIRGYSDFKGSH--GFEP-NFLQFFGKGLRSGFIPCDDQ  215 (409)
Q Consensus       143 ~~~g---~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~p~~~~  215 (409)
                      +.++   .+++||+||+|||.+|.+|+.++++.+...... .+...+......  .... .+..+..++...+++|.+++
T Consensus       161 ~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~  240 (535)
T 3ihg_A          161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRP  240 (535)
T ss_dssp             EEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECSST
T ss_pred             EEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEECCCceEEEEEecCC
Confidence            8886   689999999999999999999988765442221 212222221111  1111 23344466667788899874


Q ss_pred             -eEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEecc
Q 015303          216 -TIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGD  294 (409)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGD  294 (409)
                       .+.+.+.+.++........+.+.+.+.+.+.+......+       .......++..     ....++|..+||+|+||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~-----~~~a~~~~~grv~LvGD  308 (535)
T 3ihg_A          241 DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKP-------ELVDIQGWEMA-----ARIAERWREGRVFLAGD  308 (535)
T ss_dssp             TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCC-------EEEEEEEEEEE-----EEEESCSEETTEEECTT
T ss_pred             CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCce-------eEEEeeEeeee-----EEEECccccCCEEEEec
Confidence             433333333332222245566677777766554211110       11112222222     22345778899999999


Q ss_pred             CcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          295 ALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       295 AA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      |||.++|++|||+|+||+||.+|++.|...+++.             ..+.+|+.|+++|++++..++..|..+...+.
T Consensus       309 AAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~-------------~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~~~  374 (535)
T 3ihg_A          309 AAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQ-------------AGAGLLDTYEDERKVAAELVVAEALAIYAQRM  374 (535)
T ss_dssp             TTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTS-------------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCccCCccccccccHHHHHHHHHHHhcCC-------------CcHHHHHhhHHHHHHHHHHHHHHHHHhhHhhc
Confidence            9999999999999999999999999999988764             34678999999999999999999988776554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=3e-41  Score=334.67  Aligned_cols=347  Identities=16%  Similarity=0.164  Sum_probs=245.8

Q ss_pred             cccEEEECCChHHHHHHHHHHH-----cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR-----LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~-----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      ++||+||||||+||++|+.|++     .|++|+||||.+.+...+++..+++.++++|+++|+++.+...+.+...+.++
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~   87 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   87 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence            5799999999999999999999     99999999999888888899999999999999999999998888777777766


Q ss_pred             ecCC-CCccccccccccc-ccCCccceeccHHHHHHHHHhhCC-----CceEEeCCeEEEEEEeC--------CeEEEEe
Q 015303           79 PTIS-GKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKELP-----SGTIRYSSQVVSIEESG--------HFKLLHL  143 (409)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~-----~~~i~~~~~v~~i~~~~--------~~v~v~~  143 (409)
                      .... +.......+.... ....+....++|..+.+.|.+.+.     +++|+++++|++++.++        ..|++++
T Consensus        88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~  167 (665)
T 1pn0_A           88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL  167 (665)
T ss_dssp             EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEE
T ss_pred             eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEE
Confidence            5432 2111111111110 111334567999999999988763     37999999999998865        4577765


Q ss_pred             c------------------------------------------CC--cEEeccEEEecCCCchHHHhhhCCCCCccccee
Q 015303          144 A------------------------------------------DG--TILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRS  179 (409)
Q Consensus       144 ~------------------------------------------~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~  179 (409)
                      .                                          +|  ++++||+||+|||.+|.||++++..........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~~  247 (665)
T 1pn0_A          168 RYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDY  247 (665)
T ss_dssp             EECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEEE
T ss_pred             EecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCccE
Confidence            3                                          34  478999999999999999999988765443322


Q ss_pred             eEEEeecC---CCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC----cccccChHHHHHHHHHHhCCCCh
Q 015303          180 AIRGYSDF---KGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD----KELEDHSAELKQFVLGKLHDLPA  252 (409)
Q Consensus       180 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  252 (409)
                      .| +..+.   ...........++..++++++++|.+++.+.+++.+......    .....+.+++.+.+.+.+..+..
T Consensus       248 ~~-~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~~  326 (665)
T 1pn0_A          248 IW-GVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPYTF  326 (665)
T ss_dssp             EE-EEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHHHHTTSCC
T ss_pred             EE-EEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHHHhCcccC
Confidence            22 22221   111111112222223456788999999877666665543211    11345666666666655542211


Q ss_pred             HHHHHHHcCCCCceEeecccccCcccccccccC-CCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCC
Q 015303          253 QVKAVIEKTPLDSIISSRLQYRQPQEVLWGNIS-RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGV  331 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~  331 (409)
                      .         ...+.++..+.  ......++|. .+||+|+|||||.++|++|||||+||+||.+|++.|...+++.   
T Consensus       327 ~---------~~~~~~~~~~~--~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~---  392 (665)
T 1pn0_A          327 D---------VQQLDWFTAYH--IGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---  392 (665)
T ss_dssp             E---------EEEEEEEEEEE--EEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             c---------eeeEEEEEeee--ccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCC---
Confidence            1         11222222211  1122345677 7999999999999999999999999999999999999988764   


Q ss_pred             CCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC
Q 015303          332 GEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD  375 (409)
Q Consensus       332 ~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  375 (409)
                                ..+.+|+.|+++|++++..++..+..+..++...
T Consensus       393 ----------a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~~  426 (665)
T 1pn0_A          393 ----------AKRDILKTYEEERQPFAQALIDFDHQFSRLFSGR  426 (665)
T ss_dssp             ----------BCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                      3467899999999999999999999988888644

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=7.7e-42  Score=319.55  Aligned_cols=324  Identities=21%  Similarity=0.279  Sum_probs=233.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+++.+.+.|+++|+++.+...+.+...+.+++.  +
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH--N   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET--T
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC--C
Confidence            58999999999999999999999999999999988877789999999999999999999999887777777777654  4


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .....++..      ......++|..|.+.|.+.+  .+++++++++|++++. ++  .|++.+|++++||+||+|||.+
T Consensus        89 ~~~~~~~~~------~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~  159 (379)
T 3alj_A           89 KSVSKETFN------GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVG  159 (379)
T ss_dssp             EEEEEECGG------GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTT
T ss_pred             ceeeeccCC------CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCcc
Confidence            333222221      12356899999999998866  3689999999999987 43  7888889899999999999999


Q ss_pred             hHHHhhhCCCC-CcccceeeEEEeecCCC---CCCCCC-ceee--eecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303          162 SIVAKWLGFKN-PAFVGRSAIRGYSDFKG---SHGFEP-NFLQ--FFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED  234 (409)
Q Consensus       162 S~vr~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~-~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |.+|+.++... +.+.+..++.+.+....   +..... ....  +++++.+++++|.+++..+|++........     
T Consensus       160 s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----  234 (379)
T 3alj_A          160 SKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPR-----  234 (379)
T ss_dssp             CHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECTTCTT-----
T ss_pred             HHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecCCCCC-----
Confidence            99999997632 22345555566555421   111111 2222  567777899999999988887776542110     


Q ss_pred             ChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                       ++.+.+.+......++ .+.+++.......+..++.....    ..++|..+||+|||||||.++|++|||+|+||+||
T Consensus       235 -~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da  308 (379)
T 3alj_A          235 -GSSVPIDLEVWVEMFP-FLEPCLIEAAKLKTARYDKYETT----KLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNA  308 (379)
T ss_dssp             -TTCSSCCHHHHHHHCG-GGHHHHHHHHTCTTCCEEEEEEE----EESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCchhc-cHHHHHhhCCccceEEecccccC----CCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHH
Confidence             1111111111111111 11133332111122223332211    12367789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIA  365 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s  365 (409)
                      ..|++.|...   .             ....+|+.|+++|++++..++..+
T Consensus       309 ~~La~~L~~~---~-------------~~~~~l~~Y~~~r~~~~~~~~~~s  343 (379)
T 3alj_A          309 FSLSQDLEEG---S-------------SVEDALVAWETRIRPITDRCQALS  343 (379)
T ss_dssp             HHHHHHTTSS---S-------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc---c-------------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999752   1             457899999999999999999888

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=8.7e-41  Score=314.28  Aligned_cols=356  Identities=16%  Similarity=0.151  Sum_probs=241.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.+.+  ....++..+++.+.+.|+++|+++.+.+.+.+...+.+.+. 
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~-   80 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA-   80 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET-
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEEC-
Confidence            489999999999999999999999999999998753  22334556899999999999999999877776666666542 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC-CeEEEEe-cCCc--EEeccEEE
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFKLLHL-ADGT--ILKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~v~~-~~g~--~~~ad~vV  155 (409)
                       +.. ..+++....  .....+.+.+..+.+.|.+.+  .+++++++++|++++.++ +.+.|++ .+|+  +++||+||
T Consensus        81 -~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV  156 (394)
T 1k0i_A           81 -GQR-RRIDLKRLS--GGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (394)
T ss_dssp             -TEE-EEECHHHHH--TSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             -Cce-EEecccccc--CCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence             211 122222111  122345678888888777654  378999999999998764 5678887 6786  79999999


Q ss_pred             ecCCCchHHHhhhCCCCC-cccce--eeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          156 GCDGVNSIVAKWLGFKNP-AFVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++.... .+...  ..+.+........  .........++.+.++.|.+++...|++.......  ..
T Consensus       157 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~  232 (394)
T 1k0i_A          157 GCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPV--SHELIYANHPRGFALCSQRSATRSQYYVQVPLSEK--VE  232 (394)
T ss_dssp             ECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCCS--CSSCEEECCTTCCEEEEEEETTEEEEEEEECTTCC--GG
T ss_pred             ECCCCCcHHHHhcCccccccccccccceeEEEecCCCCC--ccceEEEEcCCceEEEEecCCCcEEEEEEeCCCCC--cc
Confidence            999999999999875422 12222  2233332211111  11222222344455566666666666665544321  12


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~  312 (409)
                      ..+.+...+.+.+.+   .......+...+.......+...     ...++|..+||+|+|||||.++|++|||+|+||+
T Consensus       233 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~  304 (394)
T 1k0i_A          233 DWSDERFWTELKARL---PSEVAEKLVTGPSLEKSIAPLRS-----FVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAAS  304 (394)
T ss_dssp             GCCHHHHHHHHHHTS---CHHHHHHCCCCCEEEEEEEEEEE-----EEEECSEETTEEECGGGTEECCGGGTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHhh---CcccccccccCcceeeEEEEhhh-----hhccccccCCEEEEechhhcCCCcccchHHHHHH
Confidence            345555666666643   33222112111111111122211     1233567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec---cCchhHHHHHHHHHHH
Q 015303          313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ---SDGKILNFLRDKILAS  389 (409)
Q Consensus       313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~---~~~~~~~~~r~~~~~~  389 (409)
                      ||..|++.|...+.+.              ...+|+.|+++|++++..++..+..+..+++   ..+++..++|+..++.
T Consensus       305 da~~La~~L~~~~~~~--------------~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~~l~~  370 (394)
T 1k0i_A          305 DVSTLYRLLLKAYREG--------------RGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEY  370 (394)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh
Confidence            9999999999876542              2468999999999999999999888666665   3467788888888874


Q ss_pred             H
Q 015303          390 F  390 (409)
Q Consensus       390 ~  390 (409)
                      +
T Consensus       371 ~  371 (394)
T 1k0i_A          371 Y  371 (394)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=8.4e-40  Score=324.00  Aligned_cols=347  Identities=17%  Similarity=0.196  Sum_probs=235.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+||++|+.|++ .|++|+||||.+.+...+++..+++.++++|+++|+.+.+...+.+.....++...
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            35899999999999999999999 99999999999988888899999999999999999999998877766666665432


Q ss_pred             ---CCCcccccccccc-cccCCccceeccHHHHHHHHHhhCC--Cc--eEEeCCeEEEEEEeCC----eEEEEec-----
Q 015303           82 ---SGKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKELP--SG--TIRYSSQVVSIEESGH----FKLLHLA-----  144 (409)
Q Consensus        82 ---~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~~----~v~v~~~-----  144 (409)
                         .+.......+... ..........+++..+.+.|.+.+.  ++  +|+++++|++++++++    .++|++.     
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~  190 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA  190 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence               1221111111110 0111233457899999999988762  34  9999999999998763    5777765     


Q ss_pred             -CC--cEEeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecC---CCCCCCCCceeeeecCCcEEEEEecCCC-eE
Q 015303          145 -DG--TILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDF---KGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TI  217 (409)
Q Consensus       145 -~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~  217 (409)
                       +|  .+++||+||+|||.+|.+|+.++...+.......+ +....   .............. ++++++++|.+++ .+
T Consensus       191 ~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~-~~g~~~~~P~~~~~~~  268 (639)
T 2dkh_A          191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAW-GVMDVLAVTDFPDVRYKVAIQS-EQGNVLIIPREGGHLV  268 (639)
T ss_dssp             GTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCE-EEEEEEEEECCTTTTSEEEEEE-TTEEEEEEECTTSSCE
T ss_pred             CCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceE-EEEEEEEccCCCccceeEEEEc-CCceEEEEEcCCCcEE
Confidence             45  47999999999999999999998775543222222 21111   11111111122222 5667889999888 55


Q ss_pred             EEEEEecC--CCc-CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccC---------
Q 015303          218 YWFFTWTS--SSQ-DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNIS---------  285 (409)
Q Consensus       218 ~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  285 (409)
                      .+++.+..  +.. ......+.+++.+.+.+.+..+...         ...+.++..+..  .....++|.         
T Consensus       269 r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~  337 (639)
T 2dkh_A          269 RFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLE---------VKNVPWWSVYEI--GQRICAKYDDVVDAVATP  337 (639)
T ss_dssp             EEEEECC-----------CCCHHHHHHHHHHHHTTSCEE---------EEEEEEEEEECC--CCEECSCSBSCCCSSCCT
T ss_pred             EEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcccCc---------ceeeeEEEeccc--ccchhhhhhccccccccc
Confidence            55554432  111 0112345566666655544322111         112222221110  111233454         


Q ss_pred             ---CCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHH
Q 015303          286 ---RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELI  362 (409)
Q Consensus       286 ---~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~  362 (409)
                         .+||+|+|||||.++|++|||||+||+||.+|++.|...+++.             ..+.+|+.|+++|++++..++
T Consensus       338 ~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~-------------a~~~lL~~Ye~eR~~~a~~~~  404 (639)
T 2dkh_A          338 DSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQ-------------CAPELLHTYSSERQVVAQQLI  404 (639)
T ss_dssp             TSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTS-------------BCGGGGHHHHHHHHHHHHHHH
T ss_pred             cCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHH
Confidence               7999999999999999999999999999999999999988764             345789999999999999999


Q ss_pred             HHHHHhheeeccC
Q 015303          363 SIAYLVGSIQQSD  375 (409)
Q Consensus       363 ~~s~~~~~~~~~~  375 (409)
                      ..+..+..+++..
T Consensus       405 ~~s~~~~~~~~~~  417 (639)
T 2dkh_A          405 DFDREWAKMFSDP  417 (639)
T ss_dssp             HHHHHSCC-----
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999888754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.1e-38  Score=300.21  Aligned_cols=331  Identities=14%  Similarity=0.121  Sum_probs=212.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++|||+||||||||+++|+.|+++|++|+|+||++.+. ...++..+++   ..++.+++...............++..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~   78 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSK---GILNEADIKADRSFIANEVKGARIYGP   78 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEET---HHHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCH---HHHHHcCCCchhhhhhcccceEEEEeC
Confidence            456999999999999999999999999999999987764 3446777776   456777765443333334445555443


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEe--cCC--cEEeccEE
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHL--ADG--TILKTKVL  154 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~--~~g--~~~~ad~v  154 (409)
                      ..... ......   .......+.++|..|.+.|++.+  .+++++++++|+++..+++.+....  .++  .+++||+|
T Consensus        79 ~~~~~-~~~~~~---~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~v  154 (397)
T 3oz2_A           79 SEKRP-IILQSE---KAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMV  154 (397)
T ss_dssp             TCSSC-EEEECS---SSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceE-eecccc---ccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEE
Confidence            22211 111111   11233456899999999998876  3789999999999998887754332  233  26899999


Q ss_pred             EecCCCchHHHhhhCCCCCcccceeeE-EEeecCCCCCCCCCceeeee---cCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFVGRSAI-RGYSDFKGSHGFEPNFLQFF---GKGLRSGFIPCDDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      |+|||.+|.+|+.++............ ............+.....++   .++.+.+++|.+++.....+....+..  
T Consensus       155 IgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~--  232 (397)
T 3oz2_A          155 IAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWI--  232 (397)
T ss_dssp             EECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTS--
T ss_pred             EeCCccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccchh--
Confidence            999999999999998765433221111 11111111111122222332   456788999999987655554443322  


Q ss_pred             ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303          231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a  310 (409)
                         .......+.+.+.+... +.+    ..............    .......+..+|++++|||||.++|++|||+|+|
T Consensus       233 ---~~~~~~~~~l~~~~~~~-~~l----~~~~~~~~~~~~~~----~~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A  300 (397)
T 3oz2_A          233 ---HNRFELKNYLDRFIENH-PGL----KKGQDIQLVTGGVS----VSKVKMPITMPGLMLVGDAARLIDPITGGGIANA  300 (397)
T ss_dssp             ---CSHHHHHHHHHHHHHTC-HHH----HTSEEEEEEEEEEE----CCCCCSCCEETTEEECGGGGTCSCTTTCCCHHHH
T ss_pred             ---hhhhhHHHHHHHHHHhC-ccc----cccceeeeeecccc----ccCcccceeeeeEEEcccccccCCCCcchhHHHH
Confidence               12223333333322222 222    11111111111111    1112224567899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 015303          311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIA  365 (409)
Q Consensus       311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s  365 (409)
                      |+||..||+.|.+++.++|            ..++.|+.|++.++++........
T Consensus       301 ~~~g~~~A~~i~~~l~~~~------------~~~~~L~~Ye~~~~~~~~~~~~~~  343 (397)
T 3oz2_A          301 IVSGMYAAQVTKEAIESND------------YSPQMMQKYEKLIKERFERKHLRN  343 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTC------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988642            457899999998887765544333

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=8.3e-38  Score=302.84  Aligned_cols=352  Identities=14%  Similarity=0.110  Sum_probs=238.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHH-HHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK-ALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+... .+..+.+.... +++.+|+++.+............+....
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-IGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC-SCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC-CCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence            489999999999999999999999999999999765433 45566666554 8899999988877665544433332222


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEeccEEE
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vV  155 (409)
                      ......+.+...........+.++|..|.+.|.+.+  .+++++++++|+++..+++.   +++...+|+  +++||+||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI  165 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIV  165 (512)
T ss_dssp             CSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEE
T ss_pred             CccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEE
Confidence            211111222211112233456799999999998866  57999999999999998875   455566674  79999999


Q ss_pred             ecCCCchHHHhhhCCCCCc-ccceeeEEEeecCCCC--CCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303          156 GCDGVNSIVAKWLGFKNPA-FVGRSAIRGYSDFKGS--HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL  232 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++..... +....++.+++.....  .+..........++++++++|+++++..+.+....+.... .
T Consensus       166 ~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~-~  244 (512)
T 3e1t_A          166 DASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEA-I  244 (512)
T ss_dssp             ECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTT-T
T ss_pred             ECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhh-h
Confidence            9999999999999654322 2345555655543211  1112223334445568999999998776666654332211 1


Q ss_pred             ccChHHHHHHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303          233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL  311 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al  311 (409)
                      ..+.++....++    ...+.+.+.+...... ......+....+......++..+|+++||||||.++|++|||+|+|+
T Consensus       245 ~~~~~~~~~~~l----~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al  320 (512)
T 3e1t_A          245 KDGHEAALLRYI----DRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLAT  320 (512)
T ss_dssp             SSCHHHHHHHHH----HTSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHH
T ss_pred             cCCHHHHHHHHH----HhCchHHHHHhcCccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHH
Confidence            223333333333    3456666666543111 00011111111122233466788999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          312 EDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       312 ~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      +||..|++.|...+.+.            .....+|+.|++.|+++...+.+.....+.+..
T Consensus       321 ~dA~~La~~L~~~l~~~------------~~~~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~~  370 (512)
T 3e1t_A          321 YSALLVARAINTCLAGE------------MSEQRCFEEFERRYRREYGNFYQFLVAFYDMNQ  370 (512)
T ss_dssp             HHHHHHHHHHHHHTTTC------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCC------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999987653            256789999999999999999998887777664

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=9.3e-37  Score=297.61  Aligned_cols=347  Identities=15%  Similarity=0.097  Sum_probs=237.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ||+++||+||||||+|+++|+.|+++|++|+|+|+.+.+.. +.+..+.+.+...++.+|+++.+............+..
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence            45679999999999999999999999999999999976554 45788999999999999999888776544332222222


Q ss_pred             CCCCcccccccccccc--cCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe-CCeEEEEec-CC--cEEecc
Q 015303           81 ISGKPSSERSLKVQGK--YGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFKLLHLA-DG--TILKTK  152 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~v~~~-~g--~~~~ad  152 (409)
                      ..........+.....  ......+.++|..|.+.|.+.+  .+++++++++|+++..+ ++.+.|++. +|  .+++||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~Ad  178 (591)
T 3i3l_A           99 GQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESD  178 (591)
T ss_dssp             SSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEES
T ss_pred             cCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcC
Confidence            2221111222211111  1123456789999999998766  57999999999999876 556788877 66  479999


Q ss_pred             EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCC--CCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKG--SHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD  229 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  229 (409)
                      +||+|||.+|.+|+.++...... ....++..++....  +.+..........++++++++|.+++.+.+.+....+...
T Consensus       179 lVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~  258 (591)
T 3i3l_A          179 FVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSA  258 (591)
T ss_dssp             EEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEEEGGGHH
T ss_pred             EEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHh
Confidence            99999999999999997764332 22233333333221  1122223333445666899999999877666655433221


Q ss_pred             cccccChHHHHHHHHHHhCCCChHHHHHHHcCCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303          230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC  308 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~  308 (409)
                      .....+.+    .+.+.+....+.+...+..... ......+.     +......+..+|+++||||||+++|+.|+|+|
T Consensus       259 ~l~~~~~~----~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGin  329 (591)
T 3i3l_A          259 EVREQGAD----AFYSSTLAKCAKAMDILGGAEQVDEVRIVQD-----WSYDTEVFSADRFFLCGDAACFTDPLFSQGVH  329 (591)
T ss_dssp             HHHHHCHH----HHHHHHHTTCHHHHHHHTTCEECSCCEEEEE-----EEEEESCSEETTEEECGGGTCBCCGGGCCHHH
T ss_pred             hhccCCHH----HHHHHHHHhCHHHHHHHhcCccccCceEecc-----cccchhhcccCCEEEEccccccCCCcccccHH
Confidence            11112222    2333333445556565553221 11111111     11223366789999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 015303          309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVG  369 (409)
Q Consensus       309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~  369 (409)
                      +|++||..||+.|.+.+.+.            +....+++.|++.++.+...+.+.....+
T Consensus       330 lAl~dA~~LA~~L~~~l~~~------------~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y  378 (591)
T 3i3l_A          330 LASQSAVSAAAAIDRITRHG------------DEKDAVHAWYNRTYREAYEQYHQFLASFY  378 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHCG------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987753            35678999999999999999998888777

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.8e-36  Score=289.45  Aligned_cols=330  Identities=15%  Similarity=0.089  Sum_probs=217.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHh-ccccccceeeee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQ-QHQQLRSIVATP   79 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~   79 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+|+.+.+.  ...++..+   +...++.+|+.+.... ......+..++.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            46899999999999999999999999999999987643  23344444   4578888887653321 112223333332


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEec---CCc--EEec
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DGT--ILKT  151 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g~--~~~a  151 (409)
                      .. +.  ..+.++       ...+.++|..|.+.|.+.+  .+++++++++|+++..+++.+. |++.   +|+  +++|
T Consensus        82 ~~-~~--~~~~~~-------~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~a  151 (453)
T 3atr_A           82 PD-MQ--TVWTVN-------GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYS  151 (453)
T ss_dssp             TT-SS--CEEEEE-------EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEEC
T ss_pred             CC-Cc--eEEeEC-------CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEc
Confidence            21 11  111111       1245789999999998876  4789999999999998888754 5544   665  7999


Q ss_pred             cEEEecCCCchHHHhhhCCCCCc----c--cceeeEEEeecCCCCCCCCCce-eeee----cCCcEEEEEecCCCeEEEE
Q 015303          152 KVLIGCDGVNSIVAKWLGFKNPA----F--VGRSAIRGYSDFKGSHGFEPNF-LQFF----GKGLRSGFIPCDDQTIYWF  220 (409)
Q Consensus       152 d~vV~AdG~~S~vr~~l~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~p~~~~~~~~~  220 (409)
                      |+||+|||.+|.+|+.++...+.    +  ....++...+....+.. ...+ ..++    .++++++++|.+++.+.+.
T Consensus       152 d~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg  230 (453)
T 3atr_A          152 KVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIE-DHDYLRIFIDQETSPGGYWWYFPKGKNKVNVG  230 (453)
T ss_dssp             SEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCT-TTTEEEEECCTTTSTTSCEEEEEEETTEEEEE
T ss_pred             CEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCcc-CCCeEEEEECCCCCCCcEEEEEECCCCeEEEE
Confidence            99999999999999998765421    1  22344454444333221 2223 3444    2566889999999877666


Q ss_pred             EEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCC
Q 015303          221 FTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT  300 (409)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~  300 (409)
                      +........   ....+.+.+.+.+....+..        ..........    .|.....++|..+|++++|||||.++
T Consensus       231 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~----~p~~~~~~~~~~~~v~lvGDAAh~~~  295 (453)
T 3atr_A          231 LGIQGGMGY---PSIHEYYKKYLDKYAPDVDK--------SKLLVKGGAL----VPTRRPLYTMAWNGIIVIGDSGFTVN  295 (453)
T ss_dssp             EEEESSSCC---CCHHHHHHHHHHHHCTTEEE--------EEEEEEEEEE----EECSSCCSCSEETTEEECGGGGTCSC
T ss_pred             EEecCCCCC---CCHHHHHHHHHHhhhhhcCC--------CeEEecccee----ccCCCCCCceecCCEEEEeCcccCCC
Confidence            655433211   11222333333221111111        0001111111    12222334677899999999999999


Q ss_pred             CCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          301 PDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       301 P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      |++|||+|+||+||..||+.|.+++..++            ...++|+.|++.|++++...+..+..+.+++.
T Consensus       296 P~~G~G~~~Ai~da~~la~~l~~~l~~~~------------~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~  356 (453)
T 3atr_A          296 PVHGGGKGSAMISGYCAAKAILSAFETGD------------FSASGLWDMNICYVNEYGAKQASLDIFRRFLQ  356 (453)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHHTC------------CSTTTTTHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHHHcCC------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876431            22578999999999999999888877777665

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=2.5e-35  Score=279.56  Aligned_cols=314  Identities=16%  Similarity=0.145  Sum_probs=212.3

Q ss_pred             CCC-cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccc-ceeee
Q 015303            1 MES-VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLR-SIVAT   78 (409)
Q Consensus         1 m~~-~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-~~~~~   78 (409)
                      |++ ++||+||||||+|+++|+.|+++|++|+|+|+.+.++. ..|..+++.+...++.+|+++.+...+.... +..+.
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~-~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   79 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF-VIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFV   79 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC-cccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEE
Confidence            443 58999999999999999999999999999999976653 5788899999999999999988877654433 23332


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE--EEEecCCc--EEecc
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK--LLHLADGT--ILKTK  152 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v--~v~~~~g~--~~~ad  152 (409)
                      +.   .....+.+...........+.++|..|.+.|.+.+  .+++++++++|++++.+++++  .+.+.+|+  +++||
T Consensus        80 ~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~  156 (421)
T 3nix_A           80 RG---KEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEAR  156 (421)
T ss_dssp             ET---TEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEE
T ss_pred             eC---CeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcC
Confidence            21   11222333222112233456899999999998866  378999999999999887764  55567887  79999


Q ss_pred             EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCC-CCCC-Cceeeee---cCCcEEEEEecCCCeEEEEEEecCC
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGS-HGFE-PNFLQFF---GKGLRSGFIPCDDQTIYWFFTWTSS  226 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~  226 (409)
                      +||+|||.+|.+|+.++...+.. ....++...+..... .... .....++   .++.+++++|.++++..+.+....+
T Consensus       157 ~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~  236 (421)
T 3nix_A          157 FIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPS  236 (421)
T ss_dssp             EEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHH
T ss_pred             EEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHH
Confidence            99999999999999998765543 333344443332211 1111 1222222   3567899999999887666554332


Q ss_pred             CcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCccc
Q 015303          227 SQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQ  305 (409)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~  305 (409)
                      .... ...+.++....+.+    ..+.+.+.+...... .+..++...     ....++..+++++||||||.++|++|+
T Consensus       237 ~~~~-~~~~~~~~l~~~~~----~~p~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~lvGDAa~~~~P~~G~  306 (421)
T 3nix_A          237 YFDE-YTGTPEERMRAMIA----NEGHIAERFKSEEFLFEPRTIEGYA-----ISASKLYGDGFVLTGNATEFLDPIFSS  306 (421)
T ss_dssp             HHTT-SCSCHHHHHHHHHH----TCTTTHHHHTTCCBSSCCEEEECCC-----BEESCSEETTEEECGGGTCBCCSTTCC
T ss_pred             Hhhh-cCCCHHHHHHHHHH----hCcHHHHHHhcCccccCceeecccc-----eeeeeeccCCEEEecccccccCCcccc
Confidence            2111 12344444444443    233344445443322 222222221     123356779999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHhhcc
Q 015303          306 GGCAALEDGIVLARCINEALKTK  328 (409)
Q Consensus       306 G~~~al~~a~~la~~l~~~~~~~  328 (409)
                      |+++|++||..|++.|.+.+.+.
T Consensus       307 G~~~A~~~a~~la~~l~~~~~~~  329 (421)
T 3nix_A          307 GATFAMESGSKGGKLAVQFLKGE  329 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999988764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=8.4e-37  Score=285.45  Aligned_cols=334  Identities=15%  Similarity=0.103  Sum_probs=211.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCch-hH-HHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG-NS-LRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|+++  |++|+|+||.+.+...++++.+++++.+.+...++. +. +...........+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            3899999999999999999999  999999999988877888999998776622222333 33 333333344444443 


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .+..+   .  .   ........+.|..|.+.|.+.+.  +++++++++|++++..           .++++|+||+||
T Consensus        80 -~g~~~---~--~---~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~Ad  139 (381)
T 3c4a_A           80 -HNEPS---L--M---STGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLAN  139 (381)
T ss_dssp             -SSSEE---E--C---CCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECC
T ss_pred             -CCeeE---E--e---cCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECC
Confidence             22221   1  0   00123357899999999988763  6899999999887542           136899999999


Q ss_pred             CCchHHHhhh----CCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcE-EEEEecCCCeEEEEEEecCCCc--Ccc
Q 015303          159 GVNSIVAKWL----GFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLR-SGFIPCDDQTIYWFFTWTSSSQ--DKE  231 (409)
Q Consensus       159 G~~S~vr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~--~~~  231 (409)
                      |.+|. |+.+    +...........+.+.....  .. ......+.+.+.. +.++|++++...+.+....+..  ...
T Consensus       140 G~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  215 (381)
T 3c4a_A          140 GVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQLF--DQ-MNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARL  215 (381)
T ss_dssp             GGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSCC--SS-EEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTS
T ss_pred             CCCch-HHhhhhhcCCCcccCCccEEEEecCCCC--Cc-ceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCc
Confidence            99999 9887    33322223344444433221  11 1111112334432 2368998877544443321100  000


Q ss_pred             cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303          232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al  311 (409)
                      ...+.+...+.+.+.+..+.+.. +++...   . ..++.....    ..++|..+||+|+|||||.++|++|||+|+||
T Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~---~-~~~~~~~~~----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al  286 (381)
T 3c4a_A          216 GEMSEEASAEYVAKVFQAELGGH-GLVSQP---G-LGWRNFMTL----SHDRCHDGKLVLLGDALQSGHFSIGHGTTMAV  286 (381)
T ss_dssp             SSSCHHHHHHHHHHHTHHHHTTC-CCBCCT---T-TCSEEEEEC----CCSCSEETTEEECGGGTCCCCGGGCCHHHHHH
T ss_pred             ccCChHHHHHHHHHHhcccCCCc-hhhcCC---C-cceeeeccc----cCCCcccCCEEEEEccccccCCCccccHHHHH
Confidence            22355566666766654332211 111110   0 012222111    23467889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC-----chhHHHHHHHH
Q 015303          312 EDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD-----GKILNFLRDKI  386 (409)
Q Consensus       312 ~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~r~~~  386 (409)
                      +||..||++|...   .             ....+|+.|+++|++++..++..+..+..++...     .+...+.|+..
T Consensus       287 ~Da~~La~~L~~~---~-------------~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~r~~~  350 (381)
T 3c4a_A          287 VVAQLLVKALCTE---D-------------GVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFVQSFD  350 (381)
T ss_dssp             HHHHHHHHHHHHS---S-------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC------CHHHHGG
T ss_pred             HHHHHHHHHHhcc---c-------------cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhcCCHHHHHHHHh
Confidence            9999999999873   1             4578999999999999999999998887433221     13345566666


Q ss_pred             HH
Q 015303          387 LA  388 (409)
Q Consensus       387 ~~  388 (409)
                      ++
T Consensus       351 ~~  352 (381)
T 3c4a_A          351 AR  352 (381)
T ss_dssp             GT
T ss_pred             hc
Confidence            55

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=6.6e-32  Score=262.33  Aligned_cols=333  Identities=14%  Similarity=0.080  Sum_probs=214.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHH------------cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhH--HHhc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR------------LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS--LRQQ   68 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~------------~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~   68 (409)
                      ..+||+||||||+|+++|+.|++            .|++|+|||+.+.+.. +.+..+.|.+...|+.+|+.+.  +...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~-g~g~~~~p~~~~~l~~lGi~e~~~~~~~   84 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI-GVGEGTWPSMRSTLSKIGIDENDFIRQC   84 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCC-CSCEECCTHHHHHHHHHTCCHHHHHHHT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCc-ceeeechHhHHHHHHHcCCCHHHHHHHc
Confidence            35899999999999999999999            8999999999766553 3488899999999999999885  4543


Q ss_pred             ccc-ccceeeeecCC----------------CCccccccccc--------------------------------ccc--c
Q 015303           69 HQQ-LRSIVATPTIS----------------GKPSSERSLKV--------------------------------QGK--Y   97 (409)
Q Consensus        69 ~~~-~~~~~~~~~~~----------------~~~~~~~~~~~--------------------------------~~~--~   97 (409)
                      ... ..++.+..+..                +.......+..                                .+.  .
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~  164 (526)
T 2pyx_A           85 DASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHF  164 (526)
T ss_dssp             TCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCC
T ss_pred             CCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCC
Confidence            322 22222221111                00000001100                                000  1


Q ss_pred             CCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHH-HhhhCCC
Q 015303           98 GEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIV-AKWLGFK  171 (409)
Q Consensus        98 ~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~  171 (409)
                      .....+.++|..|.+.|.+.+   .+++++++ +|++++.++++  +.|++.+|.+++||+||+|||.+|.+ ++.++..
T Consensus       165 ~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~  243 (526)
T 2pyx_A          165 QNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVP  243 (526)
T ss_dssp             SSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCC
T ss_pred             CCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence            112345789999999998765   47899999 69999886543  46778887789999999999999999 6677765


Q ss_pred             CCccc----ceeeEEEeecCCCC-CCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHH
Q 015303          172 NPAFV----GRSAIRGYSDFKGS-HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGK  246 (409)
Q Consensus       172 ~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (409)
                      ...+.    ....+......... ..............++++++|.+++.. ..+.+....      .+.++..+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~-~~~v~~~~~------~~~~~~~~~l~~~  316 (526)
T 2pyx_A          244 FLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTRKG-VGYVYSSSH------TNDIDAQKTLFNY  316 (526)
T ss_dssp             EEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSEEE-EEEEECTTT------CCHHHHHHHHHHH
T ss_pred             cccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCceE-EEEEecCCC------CChHHHHHHHHHH
Confidence            42211    11222222332211 111222222334555888999987533 233332221      1234556667777


Q ss_pred             hCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh
Q 015303          247 LHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~  326 (409)
                      +..+.+.    +...+.   ..++....     ...++..+|+++||||||.++|+.|+|+|+|++||..|++.|...  
T Consensus       317 l~~~~~~----l~~~~~---~~~~~~~~-----~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~~--  382 (526)
T 2pyx_A          317 LGVDGAA----ADKLEP---RQLAINPG-----YRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPPN--  382 (526)
T ss_dssp             HTCCHHH----HHHCCC---EEEECCCE-----EESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCSC--
T ss_pred             HHhcCcc----cccCCc---eEEecccC-----ccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhhc--
Confidence            7655332    222221   12222111     123456799999999999999999999999999999999888631  


Q ss_pred             ccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303          327 TKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSI  371 (409)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~  371 (409)
                                   ....+.+++.|+++|+++...+.+.....+..
T Consensus       383 -------------~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~  414 (526)
T 2pyx_A          383 -------------RMVMDTISARVNERYQQHWQQIIDFLKLHYVI  414 (526)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         12457899999999999998887766555544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=100.00  E-value=1.8e-31  Score=261.27  Aligned_cols=349  Identities=14%  Similarity=0.049  Sum_probs=210.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHc------CCceEEEeCCCCcCCc-ccceeccccHHHHHHHcCchhHHHhcccccc---
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL------GIRSMVLESSESLRVT-GFAFTVWTNAWKALDAVGIGNSLRQQHQQLR---   73 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~------g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~---   73 (409)
                      ++||+||||||+|+++|+.|++.      |++|+|+||.+.+... .++..+.+.+++.|  +   +.+...+.+..   
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l---~~~~~~g~~~~~~~  109 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--F---PDWKEKGAPLNTPV  109 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--C---TTHHHHTCCCCEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--H---HHHHhcCCceeeee
Confidence            48999999999999999999999      9999999999876542 45666777666554  2   22322222222   


Q ss_pred             ---ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEE-EEec--
Q 015303           74 ---SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKL-LHLA--  144 (409)
Q Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~-v~~~--  144 (409)
                         .+.+... .+.  ..++............+.++|..|.++|.+.+  .+++|+++++|+++..+++ .+. |++.  
T Consensus       110 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~  186 (584)
T 2gmh_A          110 TEDRFGILTE-KYR--IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDV  186 (584)
T ss_dssp             CEEEEEEECS-SCE--EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCE
T ss_pred             chhheeeecc-CCC--ccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCc
Confidence               1112111 110  11110000001122356789999999998866  3789999999999988764 443 6665  


Q ss_pred             ----CC---------cEEeccEEEecCCCchHHHhhh----CCCCCccccee--eEEEeecCCCCCCCCCceeeeec---
Q 015303          145 ----DG---------TILKTKVLIGCDGVNSIVAKWL----GFKNPAFVGRS--AIRGYSDFKGSHGFEPNFLQFFG---  202 (409)
Q Consensus       145 ----~g---------~~~~ad~vV~AdG~~S~vr~~l----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---  202 (409)
                          +|         .+++||+||+|||.+|.+|+.+    +......+...  .+......+..........++++   
T Consensus       187 g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~  266 (584)
T 2gmh_A          187 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPL  266 (584)
T ss_dssp             EECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTS
T ss_pred             cccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhheecCcccccCCeEEEEEeccc
Confidence                33         5799999999999999999886    54432211111  11222222221111112222221   


Q ss_pred             ---CCcEEEEEecC--CCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcc
Q 015303          203 ---KGLRSGFIPCD--DQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQ  277 (409)
Q Consensus       203 ---~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (409)
                         .....+++|..  ++.+.+.+....+....  ..++   .+.+.+.. . .+.+.++++.......   ......+.
T Consensus       267 ~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~---~~~l~~~~-~-~p~i~~~l~~~~~~~~---~~~~~~~~  336 (584)
T 2gmh_A          267 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNP--YLSP---FREFQRWK-H-HPSIKPTLEGGKRIAY---GARALNEG  336 (584)
T ss_dssp             CTTSCEEEEEEECCSSSCEEEEEEEEETTCCCT--TCCH---HHHHHHHT-T-STTTHHHHTTCEEEEE---EEEEEECC
T ss_pred             cCCcCCceEEEEecCCCCeEEEEEEEecCcccc--cCCh---HHHHHHHH-h-ChHHHHHhCCCeEEEe---cceEccCC
Confidence               11234567887  67776666554432211  1122   23343332 2 3455666654321111   11111111


Q ss_pred             c-ccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHH---HHHHHHh
Q 015303          278 E-VLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMG---LKRYAKE  353 (409)
Q Consensus       278 ~-~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~---l~~Y~~~  353 (409)
                      . ...++|..+|++|||||||.++|+.|||+|+||+||..||+.|.++++.++.           ...++   |+.|+++
T Consensus       337 ~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~-----------~~~~a~~~L~~Ye~~  405 (584)
T 2gmh_A          337 GFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENL-----------QSKTIGLHVTEYEDN  405 (584)
T ss_dssp             GGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCC-----------CCSSSSCCCTHHHHH
T ss_pred             CcccCCccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCc-----------chhhhhhhHHHHHHH
Confidence            1 1234677899999999999999999999999999999999999998764210           11343   8999999


Q ss_pred             hhhh-HHHHHHHHHHhheeeccC-chhHHH
Q 015303          354 RRWR-CFELISIAYLVGSIQQSD-GKILNF  381 (409)
Q Consensus       354 r~~~-~~~~~~~s~~~~~~~~~~-~~~~~~  381 (409)
                      |+++ +...+..++.+..++... ..+..+
T Consensus       406 r~~~~v~~~l~~~r~~~~~~~~~~g~~~~~  435 (584)
T 2gmh_A          406 LKNSWVWKELYSVRNIRPSCHGILGVYGGM  435 (584)
T ss_dssp             HHTSHHHHHHHHTTTTTGGGGSTTTHHHHH
T ss_pred             HHHhHHHHHHHHHhChhHHHHHhhccHHHH
Confidence            9987 677777887777776543 333333

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=100.00  E-value=5.2e-31  Score=255.73  Aligned_cols=328  Identities=11%  Similarity=-0.002  Sum_probs=205.7

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhH--HHhccccc-cceeee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS--LRQQHQQL-RSIVAT   78 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~-~~~~~~   78 (409)
                      +||+|||||++|+++|+.|++   .|++|+|+|+.+.+. .+.+..+.+....+++.+|+.+.  +....... .++.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~-~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~~   81 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRR-IGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRFE   81 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCc-eeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccceec
Confidence            699999999999999999999   999999999986543 44577788888999999998874  44332211 111111


Q ss_pred             ecCC---------CCcc--ccc--------------c---------------c-------ccc----c---------ccC
Q 015303           79 PTIS---------GKPS--SER--------------S---------------L-------KVQ----G---------KYG   98 (409)
Q Consensus        79 ~~~~---------~~~~--~~~--------------~---------------~-------~~~----~---------~~~   98 (409)
                      .+..         +...  ...              .               +       ...    +         ...
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  161 (511)
T 2weu_A           82 NWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQR  161 (511)
T ss_dssp             SSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGCC
T ss_pred             CCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccCc
Confidence            1100         0000  000              0               0       000    0         000


Q ss_pred             --CccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHHH-hhhCCC
Q 015303           99 --EHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVA-KWLGFK  171 (409)
Q Consensus        99 --~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~vr-~~l~~~  171 (409)
                        ....+.++|..|.+.|.+.+  .+++++++ +|+++..++++  +.|++.+|++++||+||+|||.+|.++ +.++..
T Consensus       162 ~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~  240 (511)
T 2weu_A          162 AQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGR  240 (511)
T ss_dssp             SCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             CCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence              22346789999999998865  47899999 99999886544  678888888899999999999999995 455654


Q ss_pred             CCc----ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHh
Q 015303          172 NPA----FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKL  247 (409)
Q Consensus       172 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (409)
                      ...    ......+........+............++++++++|.++ +..+.+.+...      ..+.++..+.+.+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~~g~~~~~~------~~~~~~~~~~l~~~~  313 (511)
T 2weu_A          241 FQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFK-RDGNGYVYSDE------FISPEEAERELRSTV  313 (511)
T ss_dssp             EEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSS-EEEEEEEECTT------TSCHHHHHHHHHHHH
T ss_pred             CccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCC-ceEEEEEECCC------CCCHHHHHHHHHHHh
Confidence            321    1111222222222221111222233345556889999987 34333333321      223455556666655


Q ss_pred             CCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhc
Q 015303          248 HDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT  327 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~  327 (409)
                      ... +.+         ......+...     ...+++..+|+++||||||.++|+.|+|+++|++||..|++.|..   +
T Consensus       314 ~~~-~~~---------~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~---~  375 (511)
T 2weu_A          314 APG-RDD---------LEANHIQMRI-----GRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG---E  375 (511)
T ss_dssp             CTT-CTT---------SCCEEEECCC-----EEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC---T
T ss_pred             Ccc-ccc---------ccceeEEeec-----cccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc---C
Confidence            321 110         1111111111     112244568999999999999999999999999999999998864   1


Q ss_pred             cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheee
Q 015303          328 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQ  372 (409)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~  372 (409)
                      .             ..+.+|+.|++.|+++...+.+.....+.+.
T Consensus       376 ~-------------~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~~  407 (511)
T 2weu_A          376 R-------------WDPVLISAYNERMAHMVDGVKEFLVLHYKGA  407 (511)
T ss_dssp             T-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            1             3467899999999999988887766655544

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.98  E-value=8.7e-31  Score=255.31  Aligned_cols=328  Identities=15%  Similarity=0.064  Sum_probs=206.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHH-HHHHcCchhH--HHhcccccc-c
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWK-ALDAVGIGNS--LRQQHQQLR-S   74 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~--~~~~~~~~~-~   74 (409)
                      ++.+||+|||||++|+++|+.|++   .|++|+|||+...+.. +.+..+.+.+.. +++.+|+.+.  +........ +
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~-~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g   81 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRI-GVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAA   81 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCC-CSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCc-CCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCC
Confidence            446899999999999999999999   9999999999765443 347778888888 9999998754  333222111 1


Q ss_pred             eeeeecC--------------CCCcc--ccccc-----c------ccc-----------------------ccCCcccee
Q 015303           75 IVATPTI--------------SGKPS--SERSL-----K------VQG-----------------------KYGEHEMRC  104 (409)
Q Consensus        75 ~~~~~~~--------------~~~~~--~~~~~-----~------~~~-----------------------~~~~~~~~~  104 (409)
                      +.+..+.              .+...  ....+     .      ..+                       .......+.
T Consensus        82 ~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (538)
T 2aqj_A           82 IKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWH  161 (538)
T ss_dssp             EEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEE
T ss_pred             ccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEE
Confidence            1111110              01000  00000     0      000                       000123467


Q ss_pred             ccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHHHh-hhCCCCCccc---
Q 015303          105 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAK-WLGFKNPAFV---  176 (409)
Q Consensus       105 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~vr~-~l~~~~~~~~---  176 (409)
                      ++|..|.+.|.+.+  .+++++++ +|+++..++++  +.|++.+|++++||+||+|||.+|.+|+ .++.....+.   
T Consensus       162 i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~  240 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYL  240 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTC
T ss_pred             EeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCcccccccc
Confidence            89999999998866  47899999 89999886543  5788888888999999999999999954 4565432211   


Q ss_pred             -ceeeEEEeecCCCC-CCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHH
Q 015303          177 -GRSAIRGYSDFKGS-HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQV  254 (409)
Q Consensus       177 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (409)
                       ...++........+ ............+.++++++|.++.. .+.+.+...      ..+.++..+.+.+.+...+  +
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~g~v~~~~------~~~~~~~~~~l~~~~~~~~--~  311 (538)
T 2aqj_A          241 LCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGRF-GSGYVFSSH------FTSRDQATADFLKLWGLSD--N  311 (538)
T ss_dssp             CCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTEE-EEEEEECTT------TSCHHHHHHHHHHHHTCCT--T
T ss_pred             ccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCce-EEEEEEcCC------CCChHHHHHHHHHHhcCCC--C
Confidence             11222222222111 00111222234555688999998853 233333221      1234555666666664321  1


Q ss_pred             HHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCC
Q 015303          255 KAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEE  334 (409)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~  334 (409)
                               .....++....     ...++..+|+++||||||.++|+.|+|+|+|++||..|++.|..   +       
T Consensus       312 ---------~~~~~~~~~~~-----~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~---~-------  367 (538)
T 2aqj_A          312 ---------QPLNQIKFRVG-----RNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD---T-------  367 (538)
T ss_dssp             ---------CCCEEEECCCE-----EESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB---T-------
T ss_pred             ---------CCceEEeeccc-----cccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc---c-------
Confidence                     11112222111     12345679999999999999999999999999999999987752   1       


Q ss_pred             chhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhe
Q 015303          335 DEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGS  370 (409)
Q Consensus       335 ~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~  370 (409)
                            +..+.+|+.|++.|+++...+.......+.
T Consensus       368 ------~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  397 (538)
T 2aqj_A          368 ------SFDPRLSDAFNAEIVHMFDDCRDFVQAHYF  397 (538)
T ss_dssp             ------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                  134678999999999998887765554443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.98  E-value=2.2e-30  Score=252.72  Aligned_cols=331  Identities=13%  Similarity=0.070  Sum_probs=211.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHH-HHHHcCchhH--HHhccccc-cce
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWK-ALDAVGIGNS--LRQQHQQL-RSI   75 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~--~~~~~~~~-~~~   75 (409)
                      ..+||+||||||+|+++|+.|++   .|++|+|||+.+.+.. +.+..+.|.+.. +++.+|+.+.  +....... .++
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~-~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~  102 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL-GVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAI  102 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCC-CCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCcc-ceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEee
Confidence            46899999999999999999999   9999999999765443 356788888888 9999999865  44332222 222


Q ss_pred             eeeecCCC--------------Ccc-ccc--------------------------c----------cccccc-----c--
Q 015303           76 VATPTISG--------------KPS-SER--------------------------S----------LKVQGK-----Y--   97 (409)
Q Consensus        76 ~~~~~~~~--------------~~~-~~~--------------------------~----------~~~~~~-----~--   97 (409)
                      .+..+...              ... ..+                          .          +.....     .  
T Consensus       103 ~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (550)
T 2e4g_A          103 KFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGS  182 (550)
T ss_dssp             EEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSC
T ss_pred             eEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCC
Confidence            22111110              000 000                          0          000000     0  


Q ss_pred             -CCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHH-HhhhCC
Q 015303           98 -GEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIV-AKWLGF  170 (409)
Q Consensus        98 -~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~  170 (409)
                       .....+.+++..|.+.|.+.+   ++++++++ +|+++..++++  +.|++.+|.+++||+||+|||.+|.+ ++.++.
T Consensus       183 ~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~  261 (550)
T 2e4g_A          183 KVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEE  261 (550)
T ss_dssp             BCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             CCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCC
Confidence             012345789999999998876   38899999 99999876544  67888888889999999999999999 556666


Q ss_pred             CCCccc----ceeeEEEeecCCCCC-CCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHH
Q 015303          171 KNPAFV----GRSAIRGYSDFKGSH-GFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLG  245 (409)
Q Consensus       171 ~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (409)
                      ....+.    ....+........+. ...........++++++++|.++. ....+.+...      ..+.++..+.+.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~~-~~~g~v~~~~------~~~~~~~~~~l~~  334 (550)
T 2e4g_A          262 PFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGR-FGTGYVYSSR------FATEDEAVREFCE  334 (550)
T ss_dssp             CEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSSE-EEEEEEECTT------TSCHHHHHHHHHH
T ss_pred             CcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCCc-cceEEEEecC------CCChHHHHHHHHH
Confidence            432111    111222222222110 011222233345668889998873 3333333221      1234455666666


Q ss_pred             HhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHh
Q 015303          246 KLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEAL  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~  325 (409)
                      .+...+ .+         ......+...     ...+++..+|+++||||||.++|++|||+++|++||..|++.|..  
T Consensus       335 ~~~~~p-~l---------~~~~~i~~~~-----~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~--  397 (550)
T 2e4g_A          335 MWHLDP-ET---------QPLNRIRFRV-----GRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD--  397 (550)
T ss_dssp             HTTCCT-TT---------SCCEEEECCC-----EEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC--
T ss_pred             hhCcCc-cc---------CCCceEEecC-----CCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc--
Confidence            654321 11         1111111111     112234568999999999999999999999999999999988753  


Q ss_pred             hccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          326 KTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                       +             +..+.+|+.|+++|+++...+.+.....+.+..
T Consensus       398 -~-------------~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~~~~  431 (550)
T 2e4g_A          398 -K-------------SLNPVLTARFNREIETMFDDTRDFIQAHFYFSP  431 (550)
T ss_dssp             -T-------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             -c-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             1             134689999999999999988887776666543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.96  E-value=7.8e-29  Score=234.69  Aligned_cols=327  Identities=17%  Similarity=0.116  Sum_probs=190.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-c---cceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-G---FAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+|+++.+... +   ........++..++.+|+.. +...........+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~~~~~  100 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNE-WPSEEFGYFGHYYYV  100 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCC-SCHHHHCEEEEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhh-hhhhcccccceeEEE
Confidence            479999999999999999999999999999998743221 1   12233445667777776421 111122233333332


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCC-eEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSS-QVVSIEESGHFKLLHLADGTILKTKVLIG  156 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~-~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  156 (409)
                      ....    ...+...   .......+.+..+...|.+.+  .++++++.. .+.+++            ....++|+||+
T Consensus       101 ~~~~----~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~------------~~~~~ad~VV~  161 (430)
T 3ihm_A          101 GGPQ----PMRFYGD---LKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLE------------GLSEQYDLLVV  161 (430)
T ss_dssp             CSSS----CEEEEEE---EEEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHH------------HHHTTSSEEEE
T ss_pred             CCCC----ccccchh---cCCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhhh------------hhcccCCEEEE
Confidence            2111    1122110   012234678888888887765  366776522 111110            00126899999


Q ss_pred             cCCCchHHHhhhCCC-C-C-cccceeeEEEeec-CCCCCCCCCceeeeecCCcEEEEEec--CCCeEEEEEEecCCCcCc
Q 015303          157 CDGVNSIVAKWLGFK-N-P-AFVGRSAIRGYSD-FKGSHGFEPNFLQFFGKGLRSGFIPC--DDQTIYWFFTWTSSSQDK  230 (409)
Q Consensus       157 AdG~~S~vr~~l~~~-~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~  230 (409)
                      |||.+|.++...... . + ..+......++.. ...+......+..+.+.+ .++++|.  .++...+++.+..+....
T Consensus       162 AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~~~~~G-~~~~~p~~~~~g~~~~~~~~~~~~~~~  240 (430)
T 3ihm_A          162 CTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFSPGHG-ELIEIPTLSFNGMSTALVLENHIGSDL  240 (430)
T ss_dssp             CCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEEETTTE-EEEEEEEEETTEEEEEEEEEECTTSSS
T ss_pred             CCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeeecCCCc-ceEEecccCCCcceEEEEEEecCCCcH
Confidence            999999887443211 1 1 1111222222222 222111122233333334 5666775  334444555554443221


Q ss_pred             c--cc----cChHHHHHHHHHHhCCCChHHHHHHHcCC------CCceEeecccccCcccccccccCCCcEEE-eccCcC
Q 015303          231 E--LE----DHSAELKQFVLGKLHDLPAQVKAVIEKTP------LDSIISSRLQYRQPQEVLWGNISRGSVCV-AGDALH  297 (409)
Q Consensus       231 ~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~l-vGDAA~  297 (409)
                      .  ..    .++++..+.+++.+..+.+.+.+++....      ...+...  .+.+.......+|..+++++ +|||||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~GDAah  318 (430)
T 3ihm_A          241 EVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQG--GVVPAFRDGHATLNNGKTIIGLGDIQA  318 (430)
T ss_dssp             GGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCEESSSTTSEEEE--CCCCEEBCSEEECTTSCEEEECGGGTE
T ss_pred             HHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhccccCccceeec--ceeecccccccccCCCCEEEEecCccc
Confidence            1  11    36777778888888877777776665543      1111110  11111112234678889888 999999


Q ss_pred             CCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHhh
Q 015303          298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERR-WRCFELISIAYLVG  369 (409)
Q Consensus       298 ~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~-~~~~~~~~~s~~~~  369 (409)
                      .++|++|||+|+||+||..|++.|.+.   .             ...++|..|+.+|+ .++....+.++.+.
T Consensus       319 ~~~p~~g~G~~~a~~da~~l~~~l~~~---~-------------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  375 (430)
T 3ihm_A          319 TVDPVLGQGANMASYAAWILGEEILAH---S-------------VYDLRFSEHLERRRQDRVLCATRWTNFTL  375 (430)
T ss_dssp             ECCGGGCCHHHHHHHHHHHHHHHHHHC---S-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHHHhc---C-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999874   1             34688999998888 66666666665543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.92  E-value=7e-25  Score=210.79  Aligned_cols=139  Identities=18%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+.+.+... ....+.+.+.+.++.+|+++....         +   ..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~~~~~~~~~~~~l~~~g~~~~~~~---------~---~~  157 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-NVLHLWPFTIHDLRALGAKKFYGR---------F---CT  157 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-CEEECCHHHHHHHHTTTHHHHCTT---------T---TC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-CcccCChhHHHHHHHcCCcccccc---------c---cc
Confidence            3579999999999999999999999999999998765432 445677778888888887532100         0   00


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe---CCeEEEEe--c-CC--cEEecc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHL--A-DG--TILKTK  152 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~---~~~v~v~~--~-~g--~~~~ad  152 (409)
                                       .....+.+..+.+.|.+.+  .+++++++++|++++.+   ++.+.|++  . +|  .++++|
T Consensus       158 -----------------~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad  220 (497)
T 2bry_A          158 -----------------GTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD  220 (497)
T ss_dssp             -----------------TTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS
T ss_pred             -----------------cccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC
Confidence                             0112456777777777655  47899999999999874   34577776  3 55  468999


Q ss_pred             EEEecCCCchHHHhhhCCC
Q 015303          153 VLIGCDGVNSIVAKWLGFK  171 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~  171 (409)
                      +||+|||.+|.+|+..+..
T Consensus       221 ~VV~A~G~~S~~r~~~~~~  239 (497)
T 2bry_A          221 VLISAAGGKFVPEGFTIRE  239 (497)
T ss_dssp             EEEECCCTTCCCTTCEEEE
T ss_pred             EEEECCCCCcccccccchh
Confidence            9999999999998766543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.72  E-value=5.1e-17  Score=151.56  Aligned_cols=194  Identities=12%  Similarity=0.034  Sum_probs=109.5

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCCCCCcccceee
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGFKNPAFVGRSA  180 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~~~~~~~~~~  180 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++++.|++.++ +++||.||.|+|.+|. +.+.++...+.......
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~~~~g~  238 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGE  238 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCceeccceE
Confidence            566777888777755  3789999999999998888888888777 7999999999999987 77777654332221111


Q ss_pred             EEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHc
Q 015303          181 IRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEK  260 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (409)
                       ...+..... ... .  .++..  ..++.|..++.+.+..+......   ......+..+.+++.+..+.+.+.    .
T Consensus       239 -~~~~~~~~~-~~~-~--~~~~~--~~~~~p~~~g~~~vG~~~~~~~~---~~~~~~~~~~~l~~~~~~~~p~l~----~  304 (382)
T 1ryi_A          239 -CLSVWNDDI-PLT-K--TLYHD--HCYIVPRKSGRLVVGATMKPGDW---SETPDLGGLESVMKKAKTMLPAIQ----N  304 (382)
T ss_dssp             -EEEEECCSS-CCC-S--EEEET--TEEEEECTTSEEEEECCCEETCC---CCSCCHHHHHHHHHHHHHHCGGGG----G
T ss_pred             -EEEECCCCC-Ccc-c--eEEcC--CEEEEEcCCCeEEEeecccccCC---CCCCCHHHHHHHHHHHHHhCCCcC----C
Confidence             111221111 111 1  22333  25678887775433222111111   111222233444444332222211    1


Q ss_pred             CCCCceEeecccccCcccccccccCCCcEEEeccCc-----CCCCCCcccchhhhhhHHHHHHHHHHH
Q 015303          261 TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL-----HPMTPDIGQGGCAALEDGIVLARCINE  323 (409)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA-----~~~~P~~g~G~~~al~~a~~la~~l~~  323 (409)
                      .  .....|...  .       .+..++..++|++.     ....++.|.|+..|...|..+|+.|..
T Consensus       305 ~--~~~~~w~g~--~-------~~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          305 M--KVDRFWAGL--R-------PGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             S--EEEEEEEEE--E-------EECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             C--ceeeEEEEe--c-------ccCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence            1  111111110  0       12345667778753     335678899999999999888888754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.70  E-value=1.9e-15  Score=140.94  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCch-HHHhhhCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNS-IVAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S-~vr~~l~~~  171 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+. |++.+| +++||.||.|+|.+| .+.+.++..
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCC
T ss_pred             eECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCC
Confidence            466777777777655  4789999999999998888877 888777 799999999999998 466777755

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.68  E-value=2.1e-15  Score=140.54  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCCC
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGFK  171 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~  171 (409)
                      ..++...+...|.+.+  .+++++++++|+++..+++++.|++.+| +++||.||.|+|.+|. +.+.++..
T Consensus       149 ~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             ceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence            3567778888877765  4789999999999999988899998887 7999999999999984 56667764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.68  E-value=3.9e-15  Score=139.90  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCch-HHHhhhCCCCCc
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNS-IVAKWLGFKNPA  174 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S-~vr~~l~~~~~~  174 (409)
                      .++...+.+.|.+.+  .+++++++++|+++..+++. +.|++.+| +++||.||.|+|.+| .+++.++...+.
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~  243 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPI  243 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCE
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCc
Confidence            345566777666654  47899999999999887665 56777777 699999999999998 678877766543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.68  E-value=1.8e-14  Score=135.04  Aligned_cols=172  Identities=16%  Similarity=0.104  Sum_probs=98.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccc---ee-c----ccc--HHHHHHHcCchhHHHhc-c
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFA---FT-V----WTN--AWKALDAVGIGNSLRQQ-H   69 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~---~~-~----~~~--~~~~l~~~gl~~~~~~~-~   69 (409)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||...+...+.+   .. +    ...  .....+.+.+++.+.+. +
T Consensus         1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (397)
T 2oln_A            1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCE   80 (397)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhC
Confidence            666789999999999999999999999999999998765421211   11 1    000  00111222223333211 1


Q ss_pred             cc---ccceeeeecCCC------------------Ccccccc-------ccccccc------CCccceeccHHHHHHHHH
Q 015303           70 QQ---LRSIVATPTISG------------------KPSSERS-------LKVQGKY------GEHEMRCVRRKLLLETLA  115 (409)
Q Consensus        70 ~~---~~~~~~~~~~~~------------------~~~~~~~-------~~~~~~~------~~~~~~~i~r~~l~~~L~  115 (409)
                      ..   ..+.........                  .....++       ++.....      ..+....++...+.+.|.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  160 (397)
T 2oln_A           81 RRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALF  160 (397)
T ss_dssp             CCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHH
T ss_pred             ccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHH
Confidence            00   011111110000                  0000000       0000000      001122456667777776


Q ss_pred             hhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch-HHHhhhCCCCC
Q 015303          116 KEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS-IVAKWLGFKNP  173 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S-~vr~~l~~~~~  173 (409)
                      +.+  .+++++++++|++++.+++++.|++.++ +++||.||+|+|.+| .+++.++...+
T Consensus       161 ~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~p  220 (397)
T 2oln_A          161 TLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGARLA  220 (397)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCCCC
T ss_pred             HHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCCCC
Confidence            654  4789999999999999888888887665 699999999999994 56777775444

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.67  E-value=2e-15  Score=139.94  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCc--EEeccEEEecCCCch-HHHhhh-CCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGT--ILKTKVLIGCDGVNS-IVAKWL-GFK  171 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~--~~~ad~vV~AdG~~S-~vr~~l-~~~  171 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.++++ +.|++.+|+  +++||.||.|+|.+| .+.+.+ +.+
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            466777888777655  47999999999999988765 888888883  799999999999998 456666 765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.67  E-value=2.2e-15  Score=143.11  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCC---eEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchH
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSS---QVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~---~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..++...+.+.|.+.+  .+++|++++   +|++|..++++++ |++.+|++++||.||.|+|.+|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            3556667777777655  479999999   9999999888888 99999988999999999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.67  E-value=2.5e-15  Score=150.11  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..++...+...|.+.+  .+++|+++++|+++..++++|.|++.+|.+++||.||.|+|.+|.
T Consensus       412 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             eeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            3566778888887755  479999999999999999999999988888999999999999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.67  E-value=3e-15  Score=133.60  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||||||+||+.|+++|++|+||||.+.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            489999999999999999999999999999998775

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.66  E-value=2.2e-14  Score=133.93  Aligned_cols=166  Identities=13%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccc---e-ecc------ccHHH-HHHHcCchhHHHhc-cc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFA---F-TVW------TNAWK-ALDAVGIGNSLRQQ-HQ   70 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~---~-~~~------~~~~~-~l~~~gl~~~~~~~-~~   70 (409)
                      +++||+|||||++|+++|+.|+++|++|+|+|+.......+.+   . .+.      +...+ ..+.+.+++.+.+. +.
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   81 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            3589999999999999999999999999999998754311111   0 010      01111 11122223333221 10


Q ss_pred             ---cccceeeeecC-C--------------CCcccccc-------ccccccc------CCccceeccHHHHHHHHHhhC-
Q 015303           71 ---QLRSIVATPTI-S--------------GKPSSERS-------LKVQGKY------GEHEMRCVRRKLLLETLAKEL-  118 (409)
Q Consensus        71 ---~~~~~~~~~~~-~--------------~~~~~~~~-------~~~~~~~------~~~~~~~i~r~~l~~~L~~~~-  118 (409)
                         ...+....... .              +.....+.       ++.....      .......++...+.+.|.+.+ 
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence               01111111110 0              00000000       0000000      011123456677777777755 


Q ss_pred             -CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhC
Q 015303          119 -PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLG  169 (409)
Q Consensus       119 -~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~  169 (409)
                       .+++++++++|++++.+++++.|++.++ +++||.||.|+|.+|. +...++
T Consensus       162 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          162 ARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             HTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             HCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence             3789999999999998887888888766 6999999999999975 444455

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.65  E-value=2.5e-15  Score=150.33  Aligned_cols=60  Identities=12%  Similarity=0.027  Sum_probs=50.8

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG~~S~  163 (409)
                      .++...+.+.|.+.+  .+++|+++++|+++..++++|.|++.+|. +++||.||.|+|.+|.
T Consensus       408 ~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          408 WLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            456677888777654  47899999999999998888999998887 7999999999999975

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.62  E-value=1.2e-13  Score=133.04  Aligned_cols=212  Identities=10%  Similarity=-0.028  Sum_probs=107.0

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEec---CCc--EEeccEEEecCCCchH-HHhh-hCCCC-C
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA---DGT--ILKTKVLIGCDGVNSI-VAKW-LGFKN-P  173 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~-l~~~~-~  173 (409)
                      .++...+...|.+.+  .+++++++++|+++..+++.+.|++.   +|+  +++||.||.|+|.+|. +++. ++... .
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~  224 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPY  224 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSS
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCccc
Confidence            467888888887765  47899999999999988876777773   565  7999999999999986 4443 54321 1


Q ss_pred             cccceeeEEEeecCCCCCCCCCceeeee--cCCcEEEEEecCCCeEEEEEEecCCC-cCcccccChHHHHHHHHHHhCCC
Q 015303          174 AFVGRSAIRGYSDFKGSHGFEPNFLQFF--GKGLRSGFIPCDDQTIYWFFTWTSSS-QDKELEDHSAELKQFVLGKLHDL  250 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  250 (409)
                      ...+.......+.  ....  .....++  .++..++++|..++......+..... .......+.+ ..+.+++.+..+
T Consensus       225 ~i~p~rG~~~~~~--~~~~--~~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  299 (501)
T 2qcu_A          225 GIRLIKGSHIVVP--RVHT--QKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEES-EINYLLNVYNTH  299 (501)
T ss_dssp             CBCCEEEEEEEEE--CSSS--CSCEEEEECTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHH-HHHHHHHHHHHH
T ss_pred             ccccceeEEEEEC--CCCC--CceEEEeecCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHH-HHHHHHHHHHHh
Confidence            1111111111122  1111  1112222  35667888998876542221111000 1111122222 223333332211


Q ss_pred             Ch-HHHHHHHcCCCCceEeecccccCccccc-ccccCCCcEEE--eccCcCCCCCCcccchhhhhhHHHHHHHHHHHHh
Q 015303          251 PA-QVKAVIEKTPLDSIISSRLQYRQPQEVL-WGNISRGSVCV--AGDALHPMTPDIGQGGCAALEDGIVLARCINEAL  325 (409)
Q Consensus       251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l--vGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~  325 (409)
                      -+ .+    ....+.. .+.-.+-..+.... ......+.++.  .++..+.+-..+|.|+..+-.-|..+++.+.+.+
T Consensus       300 ~p~~l----~~~~v~~-~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~~~~  373 (501)
T 2qcu_A          300 FKKQL----SRDDIVW-TYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYY  373 (501)
T ss_dssp             BSSCC----CGGGCCE-EEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHGGGS
T ss_pred             cCCCC----CcccEEE-EEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHHHhh
Confidence            11 10    0001111 11111111111000 11223355665  5666666777778887777666677776666554

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.61  E-value=1e-13  Score=132.73  Aligned_cols=203  Identities=12%  Similarity=0.064  Sum_probs=107.3

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhhCCCCC-------cccceeeE
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNP-------AFVGRSAI  181 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~-------~~~~~~~~  181 (409)
                      .|.+.|.+.+..++|+++++|++|+.+++++.|++.+|++++||.||.|...+... +.+.....       .+..... 
T Consensus       236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~-  313 (470)
T 3i6d_A          236 TLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAA-GMLSELPAISHLKNMHSTSVAN-  313 (470)
T ss_dssp             HHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHH-HHTTTSTTHHHHHTCEEEEEEE-
T ss_pred             HHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHH-HHcCCchhhHHHhcCCCCceEE-
Confidence            56677777765579999999999999888899999999889999999999977643 33322211       1111111 


Q ss_pred             EEeecCCCCC--CCCCceeeeecCC-c--EEE-EE-----ec--CCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhC
Q 015303          182 RGYSDFKGSH--GFEPNFLQFFGKG-L--RSG-FI-----PC--DDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH  248 (409)
Q Consensus       182 ~~~~~~~~~~--~~~~~~~~~~~~~-~--~~~-~~-----p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
                       ....++.+.  .....+....... .  ... .+     |.  +++...+...............+.+++.+.+++.+.
T Consensus       314 -v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  392 (470)
T 3i6d_A          314 -VALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLK  392 (470)
T ss_dssp             -EEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHG
T ss_pred             -EEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHH
Confidence             112222211  0011111222111 1  111 11     11  223322222222222222245677788888887776


Q ss_pred             CCChHHHHHHHcCCC-CceEeecccc--cCcccc-c---c-cc--cCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHH
Q 015303          249 DLPAQVKAVIEKTPL-DSIISSRLQY--RQPQEV-L---W-GN--ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA  318 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~---~-~~--~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la  318 (409)
                      .+.+..     ..+. ..+..|+...  ..+-.. .   . ..  -..+++.+.||+.      .|.|++.|+.++..+|
T Consensus       393 ~~~g~~-----~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~------~g~gv~~a~~sG~~aA  461 (470)
T 3i6d_A          393 KVMNIN-----GEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASF------EGVGIPDCIDQGKAAV  461 (470)
T ss_dssp             GGSCCC-----SCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTT------SCCSHHHHHHHHHHHH
T ss_pred             HHhCCC-----CCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecC------CCCCHHHHHHHHHHHH
Confidence            442211     1111 1223333211  111000 0   0 00  0236899999964      3678999999999999


Q ss_pred             HHHHHHh
Q 015303          319 RCINEAL  325 (409)
Q Consensus       319 ~~l~~~~  325 (409)
                      +.|.+.+
T Consensus       462 ~~i~~~l  468 (470)
T 3i6d_A          462 SDALTYL  468 (470)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.61  E-value=9.3e-15  Score=136.84  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=94.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc----ccee-cc-----c---------cHHHHHHHcCch
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG----FAFT-VW-----T---------NAWKALDAVGIG   62 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~----~~~~-~~-----~---------~~~~~l~~~gl~   62 (409)
                      ++++||+|||||++|+++|+.|+++|++|+|+|+.+.+....    .+.+ ++     +         .....+..+...
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            346899999999999999999999999999999988653210    0000 00     0         011222332211


Q ss_pred             hHHHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE
Q 015303           63 NSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL  140 (409)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~  140 (409)
                      +.+...  ...++.+.....+                .......+..+.+.|.+.+  .+++++++++|+++..+++.+.
T Consensus       105 ~~~~~~--~~~Gi~~~~~~~g----------------~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~  166 (417)
T 3v76_A          105 DFVALV--ERHGIGWHEKTLG----------------QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFR  166 (417)
T ss_dssp             HHHHHH--HHTTCCEEECSTT----------------EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEE
T ss_pred             HHHHHH--HHcCCCcEEeeCC----------------EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEE
Confidence            111000  0001111111111                0111244566777776655  2789999999999999988999


Q ss_pred             EEecCCcEEeccEEEecCCCch-----------HHHhhhCCC
Q 015303          141 LHLADGTILKTKVLIGCDGVNS-----------IVAKWLGFK  171 (409)
Q Consensus       141 v~~~~g~~~~ad~vV~AdG~~S-----------~vr~~l~~~  171 (409)
                      |++.++ +++||.||+|+|.+|           .+.+.+|..
T Consensus       167 V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          167 VTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             EEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             EEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence            999888 799999999999998           466666665

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.59  E-value=2.4e-14  Score=139.45  Aligned_cols=68  Identities=13%  Similarity=-0.055  Sum_probs=53.4

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEecC---C--cEEeccEEEecCCCch-HHHhhhCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLAD---G--TILKTKVLIGCDGVNS-IVAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~~---g--~~~~ad~vV~AdG~~S-~vr~~l~~~  171 (409)
                      .++...+...|.+.+  .|++++++++|+++..+++++ .|++.+   |  .+++||.||.|+|.+| .+++.++..
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            567778888777655  489999999999999988764 466553   3  3789999999999999 567777665

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.57  E-value=2.4e-13  Score=126.12  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++++.|++.+|+ ++||.||.|+|.+|.
T Consensus       145 ~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          145 FLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGG
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHH
Confidence            456667777777655  37899999999999988878888888775 999999999999874

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.54  E-value=6.8e-13  Score=121.58  Aligned_cols=143  Identities=13%  Similarity=0.025  Sum_probs=82.6

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccc-----------------eeccccHHHHHHHcCchhH
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFA-----------------FTVWTNAWKALDAVGIGNS   64 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~-----------------~~~~~~~~~~l~~~gl~~~   64 (409)
                      +||+|||||++|+++|+.|++   .|++|+|+||+..+......                 ....+.....+..+  .+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~--~~~   79 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRF--YDE   79 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHH--HHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHH--HHH
Confidence            599999999999999999999   99999999998653211000                 00011111011110  111


Q ss_pred             HHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec
Q 015303           65 LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA  144 (409)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~  144 (409)
                      +...+..    ..+.  . ............    .....-.-..+.+.|.+.. +++|+++++|++|+.++++|+|++.
T Consensus        80 ~~~~g~~----~~~~--~-~~~~~~~~~~~~----~~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~~~v~~~  147 (342)
T 3qj4_A           80 LLAYGVL----RPLS--S-PIEGMVMKEGDC----NFVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDKWEVSKQ  147 (342)
T ss_dssp             HHHTTSC----EECC--S-CEETCCC--CCE----EEECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSSEEEEES
T ss_pred             HHhCCCe----ecCc--h-hhcceeccCCcc----ceecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCEEEEEEC
Confidence            1111110    0000  0 000000000000    0000011234556666555 7899999999999999889999999


Q ss_pred             CCcEEeccEEEecCCCc
Q 015303          145 DGTILKTKVLIGCDGVN  161 (409)
Q Consensus       145 ~g~~~~ad~vV~AdG~~  161 (409)
                      +|+++++|.||.|....
T Consensus       148 ~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          148 TGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             SSCCEEESEEEECSCHH
T ss_pred             CCCEEEcCEEEECCCHH
Confidence            99888999999999853

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.53  E-value=1.2e-14  Score=138.13  Aligned_cols=162  Identities=19%  Similarity=0.179  Sum_probs=94.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----ccce-eccc--cHHHHHHHcCchhHHHhcc----ccc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----GFAF-TVWT--NAWKALDAVGIGNSLRQQH----QQL   72 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~-~~~~--~~~~~l~~~gl~~~~~~~~----~~~   72 (409)
                      ++||+|||||++|+++|+.|+++|.+|+|+||.+.+...    +.+. .+..  ....++..++....+....    ...
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            589999999999999999999999999999998764321    0010 0110  0112222222111110000    000


Q ss_pred             cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEE
Q 015303           73 RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTIL  149 (409)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~  149 (409)
                      ..+.++. ..+-.   +.....+...+.   ......+.+.|.+.+  .+++++++++|+++..+++. +.|++.+|+++
T Consensus       106 ~~~~~~~-~~G~~---~~~~~~g~~~p~---~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i  178 (447)
T 2i0z_A          106 DIITFFE-NLGVK---LKEEDHGRMFPV---SNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVL  178 (447)
T ss_dssp             HHHHHHH-HTTCC---EEECGGGEEEET---TCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEE
T ss_pred             HHHHHHH-hcCCc---eEEeeCCEEECC---CCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEE
Confidence            0000000 00000   000000000000   012455666665544  47999999999999987777 78888888789


Q ss_pred             eccEEEecCCCch-----------HHHhhhCCCC
Q 015303          150 KTKVLIGCDGVNS-----------IVAKWLGFKN  172 (409)
Q Consensus       150 ~ad~vV~AdG~~S-----------~vr~~l~~~~  172 (409)
                      +||.||+|+|.+|           .+++.+|...
T Consensus       179 ~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          179 ETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             ECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             ECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence            9999999999999           7888887654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.53  E-value=1.1e-12  Score=124.76  Aligned_cols=69  Identities=17%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEE---------------eCCeE-EEEecCCcEE--eccEEEecCCCchH
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE---------------SGHFK-LLHLADGTIL--KTKVLIGCDGVNSI  163 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~---------------~~~~v-~v~~~~g~~~--~ad~vV~AdG~~S~  163 (409)
                      .++...+.+.|.+.+  .+++++++++|+++..               +++++ .|.+.+| ++  +||.||.|+|.+|.
T Consensus       177 ~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred             EEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence            466677887777655  4789999999999987               45554 6777777 58  99999999999987


Q ss_pred             -HHhhhCCCCC
Q 015303          164 -VAKWLGFKNP  173 (409)
Q Consensus       164 -vr~~l~~~~~  173 (409)
                       +...++...+
T Consensus       256 ~l~~~~g~~~~  266 (448)
T 3axb_A          256 RLLNPLGIDTF  266 (448)
T ss_dssp             HHHGGGTCCCS
T ss_pred             HHHHHcCCCCc
Confidence             6666665543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.53  E-value=3.5e-15  Score=139.28  Aligned_cols=150  Identities=23%  Similarity=0.185  Sum_probs=92.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc----cce---e---cccc---------HHHHHHHcCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG----FAF---T---VWTN---------AWKALDAVGI   61 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~----~~~---~---~~~~---------~~~~l~~~gl   61 (409)
                      ||+++||+||||||+|+++|+.|+++|.+|+|+|+.+.+....    .+.   .   ..+.         ....+..+..
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCH
Confidence            7778999999999999999999999999999999987642210    000   0   0000         0011111111


Q ss_pred             h---hHHHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe-
Q 015303           62 G---NSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES-  135 (409)
Q Consensus        62 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-  135 (409)
                      .   +.+...+.     .+.....+..     ++         . . .+..+.+.|.+.+  .+++++++++|+++..+ 
T Consensus        81 ~~~~~~~~~~Gi-----~~~~~~~g~~-----~p---------~-~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~  139 (401)
T 2gqf_A           81 WDFISLVAEQGI-----TYHEKELGQL-----FC---------D-E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQ  139 (401)
T ss_dssp             HHHHHHHHHTTC-----CEEECSTTEE-----EE---------T-T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECC
T ss_pred             HHHHHHHHhCCC-----ceEECcCCEE-----cc---------C-C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEccc
Confidence            0   00111111     1110000000     00         0 0 3455556665544  37899999999999876 


Q ss_pred             ---CCeEEEEecCCcEEeccEEEecCCCch-----------HHHhhhCCCC
Q 015303          136 ---GHFKLLHLADGTILKTKVLIGCDGVNS-----------IVAKWLGFKN  172 (409)
Q Consensus       136 ---~~~v~v~~~~g~~~~ad~vV~AdG~~S-----------~vr~~l~~~~  172 (409)
                         ++.+.|++.++ +++||.||+|+|.+|           .+.+.+|...
T Consensus       140 ~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i  189 (401)
T 2gqf_A          140 NDEKVRFVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPV  189 (401)
T ss_dssp             SCSSCCEEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCE
T ss_pred             CcCCCeEEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCc
Confidence               56688888777 799999999999999           4566666553

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.50  E-value=1.7e-13  Score=126.21  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+|||||++|+++|..|+++|++|+|+|+.+.+.....     .          .          +......... 
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~-----~----------~----------~~~~~~~~~~-   55 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-----H----------A----------WHSLHLFSPA-   55 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG-----G----------S----------CTTCBCSSCG-
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc-----C----------C----------CCCcEecCch-
Confidence            458999999999999999999999999999999875431100     0          0          0000000000 


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG  159 (409)
                          ....+...... ........+..+.+++.+.+  .+++++++++|++++.+++.+. |++.++ ++++|.||.|+|
T Consensus        56 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG  129 (357)
T 4a9w_A           56 ----GWSSIPGWPMP-ASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATG  129 (357)
T ss_dssp             ----GGSCCSSSCCC-CCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCC
T ss_pred             ----hhhhCCCCCCC-CCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCC
Confidence                00000000000 01112345667777766543  3788999999999999999999 988888 799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      .+|.
T Consensus       130 ~~~~  133 (357)
T 4a9w_A          130 TWGE  133 (357)
T ss_dssp             SGGG
T ss_pred             CCCC
Confidence            8773

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.48  E-value=9.5e-13  Score=127.15  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=43.7

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHHHhhhC
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIVAKWLG  169 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (409)
                      ..+.+.|.+.+  .|++|+++++|++|..++++++ |++.||+++.||.||.+.+.....++.++
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----------
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcc
Confidence            45566666544  3789999999999999998866 88999999999999998888877766653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.48  E-value=5.3e-13  Score=128.40  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchh-HHH-----hccccccceee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGN-SLR-----QQHQQLRSIVA   77 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~-----~~~~~~~~~~~   77 (409)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.+.+....+.      ....+....+.. ...     ..+....+...
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~------~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~  180 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD------TFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY  180 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHH------HHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccc------hhcccccccccccccceeccCCcccccCCceE
Confidence            479999999999999999999999999999998653211100      000001100000 000     00000000000


Q ss_pred             eecCCCCcc--ccc-cccccccc------CCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecC
Q 015303           78 TPTISGKPS--SER-SLKVQGKY------GEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLAD  145 (409)
Q Consensus        78 ~~~~~~~~~--~~~-~~~~~~~~------~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~  145 (409)
                      .........  ..+ .+...+..      ............+.+.|.+.+  .+++++++++|+++..+++. +.|++.+
T Consensus       181 ~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~  260 (549)
T 3nlc_A          181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSN  260 (549)
T ss_dssp             CCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETT
T ss_pred             EEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECC
Confidence            000000000  000 00000000      000111123355555555543  37999999999999988776 4588899


Q ss_pred             CcEEeccEEEecCCCchH----HHhhhCCC
Q 015303          146 GTILKTKVLIGCDGVNSI----VAKWLGFK  171 (409)
Q Consensus       146 g~~~~ad~vV~AdG~~S~----vr~~l~~~  171 (409)
                      |++++||+||+|+|.+|.    ..+..+..
T Consensus       261 G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          261 GEEIKSRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             SCEEECSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             CCEEECCEEEECCCCChhhHHHHHHHcCCC
Confidence            989999999999999995    33444554

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.47  E-value=7.3e-12  Score=118.30  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             HHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHHHhhh
Q 015303          109 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       109 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      .+.+.|.+.+  .+++|+++++|++|..++++++ |++ +|++++||.||.|.|.+...+ .+
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~-ll  257 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAV-LC  257 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHH-HT
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHH-hc
Confidence            4555555544  3789999999999999888876 655 477899999999999877643 44

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.46  E-value=1.8e-11  Score=117.33  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=46.8

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr  165 (409)
                      .|.+.|.+.+..++|+++++|++|+.+++++.|++.+| +++||.||.|.+.+...+
T Consensus       237 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~  292 (475)
T 3lov_A          237 SLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQ  292 (475)
T ss_dssp             HHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHH
T ss_pred             HHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHH
Confidence            46666777665579999999999999999999999998 799999999999765433

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.46  E-value=3.6e-13  Score=126.30  Aligned_cols=168  Identities=15%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcc-c-ce-ec-cccH------HHHHHHcCchhHHHhc--c
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTG-F-AF-TV-WTNA------WKALDAVGIGNSLRQQ--H   69 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~-~-~~-~~-~~~~------~~~l~~~gl~~~~~~~--~   69 (409)
                      ++||+|||||++|+++|+.|+++  |++|+|+|+.......+ . +. .+ .+..      ....+.++++......  .
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKT  115 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCC
Confidence            48999999999999999999999  99999999986443221 1 11 12 1110      1111111122110000  0


Q ss_pred             ccc--cceee-eecC--CCCcccccc----cccc------cc----cCCccceeccHHHHHHHHHhhC--CCceEEeCCe
Q 015303           70 QQL--RSIVA-TPTI--SGKPSSERS----LKVQ------GK----YGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQ  128 (409)
Q Consensus        70 ~~~--~~~~~-~~~~--~~~~~~~~~----~~~~------~~----~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~  128 (409)
                      ..+  .+... ....  .+ .+....    ++..      ..    ...+....++...+.+.|.+.+  .+++++++++
T Consensus       116 ~~~~~~g~l~~~~~~~~~g-~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~  194 (405)
T 3c4n_A          116 LEVEDRPLLHLLPAGEGSG-LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR  194 (405)
T ss_dssp             CCEEECCEEEEESSCCSSS-CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE
T ss_pred             CcEEeeCeEEehhhHhHCC-CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            000  01100 0000  00 000000    0000      00    0011223567778888887765  4789999999


Q ss_pred             EE---------EEEEeCCeEEEEecCCcEEeccEEEecCCCch-HHHh-hhCCCCC
Q 015303          129 VV---------SIEESGHFKLLHLADGTILKTKVLIGCDGVNS-IVAK-WLGFKNP  173 (409)
Q Consensus       129 v~---------~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S-~vr~-~l~~~~~  173 (409)
                      |+         ++..+++.+.|++.++ +++||.||.|+|.+| .+++ .++...+
T Consensus       195 v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~~~  249 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLHTR  249 (405)
T ss_dssp             EEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCCCC
T ss_pred             EEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCCCCC
Confidence            99         8877777777777666 799999999999999 6777 7776544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.46  E-value=9.4e-13  Score=117.15  Aligned_cols=132  Identities=19%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcc--c-----ceeccccHHHHHHHcCchhHHHhccccccce
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTG--F-----AFTVWTNAWKALDAVGIGNSLRQQHQQLRSI   75 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~--~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (409)
                      ++||+||||||+|+++|+.|+++ |.+|+|+|+.+.+....  +     ...+.....+.++.+|+.         +.  
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~---------~~--  107 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA---------YD--  107 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC---------CE--
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCC---------cc--
Confidence            57999999999999999999997 99999999987653211  0     011112223333333321         00  


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEec-------
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLA-------  144 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~-------  144 (409)
                         .  .+.                .........+...|.+.+   .+++++++++|+++..+++.+ .+.+.       
T Consensus       108 ---~--~~~----------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~  166 (284)
T 1rp0_A          108 ---E--QDT----------------YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQN  166 (284)
T ss_dssp             ---E--CSS----------------EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTC
T ss_pred             ---c--CCC----------------EEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccc
Confidence               0  000                000123455555555543   478999999999999887754 33332       


Q ss_pred             --CC-----cEEeccEEEecCCCchHHHhh
Q 015303          145 --DG-----TILKTKVLIGCDGVNSIVAKW  167 (409)
Q Consensus       145 --~g-----~~~~ad~vV~AdG~~S~vr~~  167 (409)
                        ++     .+++||.||+|+|.+|.++..
T Consensus       167 ~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          167 HHTQSCMDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             TTTSSCCCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             cCccccCceEEEECCEEEECCCCchHHHHH
Confidence              22     478999999999999877654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.46  E-value=8.9e-13  Score=109.03  Aligned_cols=116  Identities=23%  Similarity=0.341  Sum_probs=83.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+.......               .+                .. ..+ 
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~---------------~~----------------~~-~~~-   48 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVS---------------RV----------------PN-YPG-   48 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCS---------------CC----------------CC-STT-
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCch---------------hh----------------hc-cCC-
Confidence            7999999999999999999999999999999863211000               00                00 000 


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                            ++          ..+....+.+.+.+.+  .+++++++ +|++++.+++.+.+++.++ ++++|+||.|+|..+
T Consensus        49 ------~~----------~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           49 ------LL----------DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             ------CT----------TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCC
T ss_pred             ------Cc----------CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCC
Confidence                  00          0123345555554433  37899999 9999998877888998888 799999999999999


Q ss_pred             HHHhhhCCC
Q 015303          163 IVAKWLGFK  171 (409)
Q Consensus       163 ~vr~~l~~~  171 (409)
                      .+++.++.+
T Consensus       111 ~~~~~~g~~  119 (180)
T 2ywl_A          111 TLPSLLGLT  119 (180)
T ss_dssp             HHHHHHTCC
T ss_pred             CccccCCCC
Confidence            887777643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.45  E-value=4.5e-13  Score=120.28  Aligned_cols=132  Identities=22%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcc-------cceeccccHHHHHHHcCchhHHHhccccccc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTG-------FAFTVWTNAWKALDAVGIGNSLRQQHQQLRS   74 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      ++||+||||||+|+++|+.|+++  |++|+|+|+...+....       ....+.+.....++.+|+.-.         .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------~  149 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYE---------D  149 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCE---------E
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCccc---------c
Confidence            58999999999999999999997  99999999987653111       111223344555555554210         0


Q ss_pred             eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeC---------------
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESG---------------  136 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~---------------  136 (409)
                            . +.    +            ....+...+.+.|.+.+   ++++++++++++++..++               
T Consensus       150 ------~-G~----~------------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~  206 (344)
T 3jsk_A          150 ------E-GD----Y------------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAE  206 (344)
T ss_dssp             ------C-SS----E------------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC--------------
T ss_pred             ------c-CC----e------------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccc
Confidence                  0 00    0            00112334445555433   478999999999987665               


Q ss_pred             --C--e---EEEEe----c--------CCcEEeccEEEecCCCchHHHhh
Q 015303          137 --H--F---KLLHL----A--------DGTILKTKVLIGCDGVNSIVAKW  167 (409)
Q Consensus       137 --~--~---v~v~~----~--------~g~~~~ad~vV~AdG~~S~vr~~  167 (409)
                        +  +   +.+..    .        +..+++|++||+|||..|++++.
T Consensus       207 ~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~  256 (344)
T 3jsk_A          207 DEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAF  256 (344)
T ss_dssp             --CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCH
T ss_pred             cCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHH
Confidence              2  2   22221    1        22479999999999999986444

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.44  E-value=4.9e-13  Score=115.30  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=84.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+.+|..|++.|.+|+|+|+....  .+  ..+.+..      .++.                   .
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~--~G--~~~~~~~------~~~~-------------------~   52 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA--VM--MPFLPPK------PPFP-------------------P   52 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--TT--CCSSCCC------SCCC-------------------T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCc--CC--cccCccc------cccc-------------------h
Confidence            4589999999999999999999999999999998421  11  1111100      0000                   0


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccEEEecC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ......++ +..    .+     ++..+.+.|.+.+   ++++++ +++|+++..+++.+ .+.+.+|.+++||+||.|+
T Consensus        53 ~~~~~~~~-d~~----g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~  121 (232)
T 2cul_A           53 GSLLERAY-DPK----DE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAV  121 (232)
T ss_dssp             TCHHHHHC-CTT----CC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECC
T ss_pred             hhHHhhhc-cCC----CC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECC
Confidence            00000000 000    00     4666666666644   477887 57999999887774 6788888889999999999


Q ss_pred             CCchHHHhhhCC
Q 015303          159 GVNSIVAKWLGF  170 (409)
Q Consensus       159 G~~S~vr~~l~~  170 (409)
                      |.+|..+..+|.
T Consensus       122 G~~s~~~~~~G~  133 (232)
T 2cul_A          122 GSFLGARLFLGG  133 (232)
T ss_dssp             TTCSSCEEEETT
T ss_pred             CCChhhceecCC
Confidence            999877665543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.44  E-value=5e-13  Score=122.12  Aligned_cols=123  Identities=17%  Similarity=0.226  Sum_probs=85.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++++||+||||||+|+++|..|+++|++|+|+|+++.+...            ... .          .+.  ...++ .
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~------------~~~-~----------~~~--~~~~~-~   56 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQ------------LTA-L----------YPE--KYIYD-V   56 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHH------------HHH-T----------CTT--SEECC-S
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCe------------eec-c----------CCC--ceeec-c
Confidence            34689999999999999999999999999999998653200            000 0          000  00000 0


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .+       +           ..+.+..+.+.+.+.+.  +++++++++|+.++.+++.+.|++.++.++++|.||.|+|
T Consensus        57 ~~-------~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG  118 (335)
T 2zbw_A           57 AG-------F-----------PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAG  118 (335)
T ss_dssp             TT-------C-----------SSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCT
T ss_pred             CC-------C-----------CCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCC
Confidence            00       0           01334555555554432  5788999999999988888889998888899999999999


Q ss_pred             CchHHHhhh
Q 015303          160 VNSIVAKWL  168 (409)
Q Consensus       160 ~~S~vr~~l  168 (409)
                      .+|...+..
T Consensus       119 ~~~~~p~~~  127 (335)
T 2zbw_A          119 VGAFEPRRI  127 (335)
T ss_dssp             TSEEEECCC
T ss_pred             CCCCCCCCC
Confidence            976554443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.43  E-value=4e-13  Score=124.05  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=84.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|++.|++|+|||+.+.+..                   .+...    .+.  ...+. 
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg-------------------~~~~~----~~~--~~~~~-   64 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG-------------------QLAAL----YPE--KHIYD-   64 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH-------------------HHHHT----CTT--SEECC-
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC-------------------ccccc----CCC--ccccc-
Confidence            45568999999999999999999999999999999865320                   00000    000  00000 


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEec
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~A  157 (409)
                      ..+       +           ..+.+..+.+.|.+.+  .+++++++++|+.++..++ .+.|++.++.++++|.||.|
T Consensus        65 ~~~-------~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~A  126 (360)
T 3ab1_A           65 VAG-------F-----------PEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIA  126 (360)
T ss_dssp             STT-------C-----------SSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEEC
T ss_pred             CCC-------C-----------CCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEc
Confidence            000       0           0134455555555543  2678999999999998765 68899988888999999999


Q ss_pred             CCCchHHHhhh
Q 015303          158 DGVNSIVAKWL  168 (409)
Q Consensus       158 dG~~S~vr~~l  168 (409)
                      +|..|...+.+
T Consensus       127 tG~~~~~~~~~  137 (360)
T 3ab1_A          127 AGLGAFEPRKL  137 (360)
T ss_dssp             CTTCSCCBCCC
T ss_pred             cCCCcCCCCCC
Confidence            99977554433

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.43  E-value=1.8e-12  Score=119.86  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            34578999999999999999999999999999999753

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.42  E-value=4.2e-12  Score=119.80  Aligned_cols=58  Identities=24%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             HHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhhC
Q 015303          109 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLG  169 (409)
Q Consensus       109 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (409)
                      .+.+.|.+.+  .+++|+++++|++|..+++++ | ..+|++++||.||.|.|.+... +.++
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~-~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETV-KLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHH-HHHC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHH-HhcC
Confidence            4555555544  368999999999999888888 5 5677789999999999987654 4554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.42  E-value=8.1e-12  Score=127.63  Aligned_cols=70  Identities=24%  Similarity=0.349  Sum_probs=54.6

Q ss_pred             eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccEEEecCCCchHH-HhhhCCCCC
Q 015303          103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNSIV-AKWLGFKNP  173 (409)
Q Consensus       103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~  173 (409)
                      ..++...+...|.+.+  .+++++++++|++|+.+++++ .|.+.+| +++||.||.|+|.+|.. .+.++...+
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~p  219 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVP  219 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCC
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCCcc
Confidence            3567778888887765  478999999999999888775 5777777 69999999999999864 444565544

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.42  E-value=1.3e-12  Score=126.58  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccc----cHHHHHHHcC-chhHH-Hhccccccce
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWT----NAWKALDAVG-IGNSL-RQQHQQLRSI   75 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~----~~~~~l~~~g-l~~~~-~~~~~~~~~~   75 (409)
                      .++||+|||||+||+++|+.|++.|.+|+|+|+.. .....+|......    ...+.+..++ +.... ...+     +
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~g-----i   94 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATG-----I   94 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHE-----E
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcC-----C
Confidence            46899999999999999999999999999999985 2333333222211    1122222222 11111 1111     1


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEec
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKT  151 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a  151 (409)
                      .+.......          +.........+++..+...|.+.+   ++++++ +.+|+.+..+++.+. |.+.+|.+++|
T Consensus        95 ~f~~l~~~k----------gpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~A  163 (641)
T 3cp8_A           95 QFRMLNRSK----------GPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQA  163 (641)
T ss_dssp             EEEEECSSS----------CTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEE
T ss_pred             chhhccccc----------CccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEe
Confidence            111111100          000001123567777777776654   478885 559999988888776 88888889999


Q ss_pred             cEEEecCCCchHH
Q 015303          152 KVLIGCDGVNSIV  164 (409)
Q Consensus       152 d~vV~AdG~~S~v  164 (409)
                      |.||+|+|.++..
T Consensus       164 d~VVLATG~~s~~  176 (641)
T 3cp8_A          164 KAAILACGTFLNG  176 (641)
T ss_dssp             EEEEECCTTCBTC
T ss_pred             CEEEECcCCCCCc
Confidence            9999999988653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.39  E-value=1.3e-12  Score=126.75  Aligned_cols=150  Identities=18%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccc----cHHHHHHHcC-chhHHHhcccccccee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWT----NAWKALDAVG-IGNSLRQQHQQLRSIV   76 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~----~~~~~l~~~g-l~~~~~~~~~~~~~~~   76 (409)
                      .++||+|||||+||+++|+.|++.|.+|+|+|++. .....+|...+..    ...+.++.++ ........    ..+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~----~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQ----AGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhh----cccc
Confidence            35899999999999999999999999999999974 2333333222211    1223334433 11111110    1111


Q ss_pred             eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEecCCcEEecc
Q 015303           77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTK  152 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad  152 (409)
                      +.......          +.........+++..+.+.|.+.+   +++++ ++++|+.+..+++.+ .|.+.+|.+++||
T Consensus       103 f~~l~~~k----------gpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad  171 (651)
T 3ces_A          103 FRILNASK----------GPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAK  171 (651)
T ss_dssp             EEEESTTS----------CGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEE
T ss_pred             hhhhhccc----------CcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECC
Confidence            11111100          000001112467777777766544   47888 567999998777664 6788888889999


Q ss_pred             EEEecCCCchHHHhh
Q 015303          153 VLIGCDGVNSIVAKW  167 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~  167 (409)
                      .||+|+|.+|..+..
T Consensus       172 ~VVLATGt~s~~~~i  186 (651)
T 3ces_A          172 AVVLTVGTFLDGKIH  186 (651)
T ss_dssp             EEEECCSTTTCCEEE
T ss_pred             EEEEcCCCCccCccc
Confidence            999999998765443

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.39  E-value=2e-12  Score=126.46  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=89.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc--cceeccccHHHHHHHcCchhHHH--------------
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG--FAFTVWTNAWKALDAVGIGNSLR--------------   66 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~--------------   66 (409)
                      .++||+|||||++|+++|+.|++.|.+|+||||.+.+....  .+..+........+.+|+.+...              
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999999999999998653221  11111111112222233221111              


Q ss_pred             --------------------hccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEE
Q 015303           67 --------------------QQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIR  124 (409)
Q Consensus        67 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~  124 (409)
                                          ..+.++...   ....+.......        ......+....+.+.|.+.+  .+++|+
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~---~~~~g~~~~r~~--------~~~~~~~~~~~l~~~L~~~~~~~gv~i~  268 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDL---KRSGGARVDRTH--------RPHGGKSSGPEIIDTLRKAAKEQGIDTR  268 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEE---ECCTTCSSCCEE--------ECSSSSCHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccc---cccCCCCCCcee--------ecCCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence                                111111000   000000000000        00000134566667776654  379999


Q ss_pred             eCCeEEEEEEeC-CeE---EEEecCCc--EEeccEEEecCCCchHHHhhh
Q 015303          125 YSSQVVSIEESG-HFK---LLHLADGT--ILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       125 ~~~~v~~i~~~~-~~v---~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      ++++|+++..++ +++   ++...+|+  +++||.||+|+|.+|..++.+
T Consensus       269 ~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          269 LNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             CSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             eCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            999999998877 653   33333665  689999999999999875543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.39  E-value=1.8e-12  Score=123.15  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=87.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhc-cccccc----
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRS----   74 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~----   74 (409)
                      ++.+||+||||||+|+++|..|++.|+  +|+|||+.+.+...   ........   ..+++....... ..+...    
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~---~~~~~~~~---~~~~ip~~~~~~~~~~~~~g~~~   77 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV---WNYTSTLS---NKLPVPSTNPILTTEPIVGPAAL   77 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTT---CSCCSCCC---SCCCSSBCCTTCCCCCBCCSSSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCe---ecCCCCCC---ccccccccccccccccccccccc
Confidence            356899999999999999999999999  99999998654210   00000000   000010000000 000000    


Q ss_pred             ----eeeeec-CCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecC--
Q 015303           75 ----IVATPT-ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLAD--  145 (409)
Q Consensus        75 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~--  145 (409)
                          ...+.. ..........+...... ......+.+..+.++|.+.+.  +..++++++|++++..++.|+|++.+  
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~  156 (447)
T 2gv8_A           78 PVYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK  156 (447)
T ss_dssp             CBCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESS
T ss_pred             CCccCchhhhhccCCCHHHhccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecC
Confidence                000000 00000000011110000 011123567788887776543  46799999999999988888888876  


Q ss_pred             -Cc---EEeccEEEecCCCchH
Q 015303          146 -GT---ILKTKVLIGCDGVNSI  163 (409)
Q Consensus       146 -g~---~~~ad~vV~AdG~~S~  163 (409)
                       |+   ++.+|.||+|+|.+|.
T Consensus       157 ~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          157 AGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             TTCCEEEEEESEEEECCCSSSS
T ss_pred             CCCeeEEEEeCEEEECCCCCCC
Confidence             66   7999999999999764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.38  E-value=2.3e-11  Score=115.08  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             eEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       122 ~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      +|+++++|++|+.++++++|++.+|++++||.||.|.|..
T Consensus       219 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~  258 (431)
T 3k7m_X          219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMN  258 (431)
T ss_dssp             CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGG
T ss_pred             ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcc
Confidence            8999999999999888899999999889999999999954

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.38  E-value=3.6e-12  Score=123.05  Aligned_cols=147  Identities=20%  Similarity=0.156  Sum_probs=91.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceecc----ccHHHHHHHcC-chhHHHhccccccceee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVW----TNAWKALDAVG-IGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~----~~~~~~l~~~g-l~~~~~~~~~~~~~~~~   77 (409)
                      ++||+|||||+||+.+|+.|++.|.+|+|+|++. .....+|...+.    ....+.++.+| ........    .++.+
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~----~gi~f  102 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ----TGIQF  102 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH----HEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh----cccce
Confidence            5899999999999999999999999999999974 233233322211    11233344443 22222111    01111


Q ss_pred             eecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccE
Q 015303           78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKV  153 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~  153 (409)
                      .......          +.........+++..+.+.|.+.+   +++++ ++++|+++..+++.+ .|.+.+|.++.||.
T Consensus       103 ~~l~~~k----------Gpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ada  171 (637)
T 2zxi_A          103 KMLNTRK----------GKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKA  171 (637)
T ss_dssp             EEESTTS----------CGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSE
T ss_pred             eeccccc----------CccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCE
Confidence            1111000          000001112467777777776644   47888 578999998877765 58888888999999


Q ss_pred             EEecCCCchHHH
Q 015303          154 LIGCDGVNSIVA  165 (409)
Q Consensus       154 vV~AdG~~S~vr  165 (409)
                      ||+|+|.++..+
T Consensus       172 VVLATG~~s~~~  183 (637)
T 2zxi_A          172 VVVTTGTFLNGV  183 (637)
T ss_dssp             EEECCTTCBTCE
T ss_pred             EEEccCCCccCc
Confidence            999999886543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.37  E-value=2.9e-10  Score=108.96  Aligned_cols=55  Identities=13%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe---cCCcEEeccEEEecCCCchH
Q 015303          108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL---ADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~---~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..|.+.|.+.+ +++|+++++|++|..+++++.|++   .+|++++||.||.|.+.+..
T Consensus       238 ~~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~  295 (478)
T 2ivd_A          238 QVLIDALAASL-GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHAT  295 (478)
T ss_dssp             HHHHHHHHHHH-GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHh-hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHH
Confidence            34555565555 568999999999998887888888   67778999999999997754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.36  E-value=1.1e-10  Score=113.16  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .+.+.|.+.. +++|+++++|++|+.+++++.|++.+|++++||.||.|.+.+..
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l  269 (520)
T 1s3e_A          216 QVSERIMDLL-GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLG  269 (520)
T ss_dssp             HHHHHHHHHH-GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGG
T ss_pred             HHHHHHHHHc-CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHH
Confidence            3444555444 57899999999999888889999999989999999999998763

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.34  E-value=1.1e-11  Score=110.94  Aligned_cols=108  Identities=17%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+|+++|..|++.|++|+|+|+........                             ..      ..  
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~-----------------------------~~------~~--   45 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFA-----------------------------SH------SH--   45 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGC-----------------------------SC------CC--
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccc-----------------------------hh------hc--
Confidence            799999999999999999999999999999874210000                             00      00  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                           .+.        ....+....+...+.+.+   ++++++ +++|+.++.+++.+.+++.+++++++|.||.|+|..
T Consensus        46 -----~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           46 -----GFL--------GQDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             -----SST--------TCTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred             -----CCc--------CCCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCC
Confidence                 000        000133455666655544   245555 459999999988999999999899999999999987


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      +.
T Consensus       112 ~~  113 (297)
T 3fbs_A          112 DE  113 (297)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.33  E-value=7e-12  Score=111.91  Aligned_cols=133  Identities=18%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcc-------cceeccccHHHHHHHcCchhHHHhccccccc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTG-------FAFTVWTNAWKALDAVGIGNSLRQQHQQLRS   74 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      .+||+||||||+|+++|+.|++.  |++|+|+|+.+.+....       ....+.+.....|+.+|+.         +. 
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~---------~~-  134 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP---------YE-  134 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCC---------CE-
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcc---------cc-
Confidence            46999999999999999999998  99999999987653111       0111222333444444321         00 


Q ss_pred             eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeC----C--eEE-EEe-
Q 015303           75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESG----H--FKL-LHL-  143 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~----~--~v~-v~~-  143 (409)
                          . . +.                .....+...+.+.|.+.+   ++++++.+++|+++..++    +  ++. |.. 
T Consensus       135 ----~-~-g~----------------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~  192 (326)
T 2gjc_A          135 ----D-E-GD----------------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTN  192 (326)
T ss_dssp             ----E-C-SS----------------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEE
T ss_pred             ----c-C-CC----------------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEec
Confidence                0 0 00                000112345555555543   588999999999998763    3  322 221 


Q ss_pred             -----c--------CCcEEec---------------cEEEecCCCchHHHhhh
Q 015303          144 -----A--------DGTILKT---------------KVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       144 -----~--------~g~~~~a---------------d~vV~AdG~~S~vr~~l  168 (409)
                           .        ++.++.|               |+||+|+|..|++.+.+
T Consensus       193 ~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          193 WTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             EHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             ceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                 1        3347899               99999999998876665

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.32  E-value=1.3e-11  Score=111.12  Aligned_cols=109  Identities=21%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      |++|||+||||||||+++|+.|++.|++|+|+|++..   .  +. +.             .     .  ...+     .
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~---g--g~-~~-------------~-----~--~~~~-----~   52 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN---R--NR-VT-------------Q-----N--SHGF-----I   52 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC---G--GG-GS-------------S-----C--BCCS-----T
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---C--Ce-ee-------------e-----e--cCCc-----c
Confidence            6679999999999999999999999999999998632   1  10 00             0     0  0000     0


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEec
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                      .        .+           .+....+.+...+.+   ..+.+.. ..+..+... .+.+++.+.+++++++|.||.|
T Consensus        53 ~--------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiA  112 (304)
T 4fk1_A           53 T--------RD-----------GIKPEEFKEIGLNEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLA  112 (304)
T ss_dssp             T--------CT-----------TBCHHHHHHHHHHHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEEC
T ss_pred             C--------CC-----------CCCHHHHHHHHHHHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEc
Confidence            0        00           122233333333322   2344444 445555444 4568899999999999999999


Q ss_pred             CCCc
Q 015303          158 DGVN  161 (409)
Q Consensus       158 dG~~  161 (409)
                      +|..
T Consensus       113 TGs~  116 (304)
T 4fk1_A          113 TGMQ  116 (304)
T ss_dssp             CCCE
T ss_pred             cCCc
Confidence            9975

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.32  E-value=1.3e-11  Score=120.80  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----ccceeccccHHHHHHHcCchhHHH-------------
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----GFAFTVWTNAWKALDAVGIGNSLR-------------   66 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~-------------   66 (409)
                      ++||+|||||++|+++|+.|+++|.+|+|+||.+.+...    +.++....  ....+.+|+.+...             
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~--~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAW--TDQQKAKKITDSPELMFEDTMKGGQNI  203 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSS--CHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCC--CHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            589999999999999999999999999999998765321    11221111  12223333221110             


Q ss_pred             ---------------------hccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceE
Q 015303           67 ---------------------QQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTI  123 (409)
Q Consensus        67 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i  123 (409)
                                           ..+.++...   ....+.........        .........+.+.|.+.+  .+++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~g~~~~r~~~~--------~~g~~~g~~l~~~L~~~~~~~gv~i  272 (571)
T 1y0p_A          204 NDPALVKVLSSHSKDSVDWMTAMGADLTDV---GMMGGASVNRAHRP--------TGGAGVGAHVVQVLYDNAVKRNIDL  272 (571)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEE---ECCTTCSSCCEEES--------TTTCCHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCCCccC---cccCCcCCCeeEec--------CCCCCCHHHHHHHHHHHHHhcCCEE
Confidence                                 111111000   00000000000000        000023456666666554  37999


Q ss_pred             EeCCeEEEEEEeC-CeE---EEEecCCc--EEeccEEEecCCCchHHH
Q 015303          124 RYSSQVVSIEESG-HFK---LLHLADGT--ILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       124 ~~~~~v~~i~~~~-~~v---~v~~~~g~--~~~ad~vV~AdG~~S~vr  165 (409)
                      +++++|+++..++ +.+   ++...+|+  +++||.||+|+|.+|..+
T Consensus       273 ~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~  320 (571)
T 1y0p_A          273 RMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNN  320 (571)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             EeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCH
Confidence            9999999998876 543   33333565  689999999999998744

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.32  E-value=1.3e-10  Score=113.28  Aligned_cols=67  Identities=13%  Similarity=-0.020  Sum_probs=48.3

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEec---CCc--EEeccEEEecCCCchH-HHhhhCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLA---DGT--ILKTKVLIGCDGVNSI-VAKWLGF  170 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~l~~  170 (409)
                      .++...+...+.+.+  .|++++++++|+++..+++. +.|++.   +++  +++||.||.|+|.+|. +++..+.
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            355566666666544  47899999999999988776 345543   333  6999999999999984 4555454

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.32  E-value=1.2e-11  Score=112.16  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=76.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|++.|++|+|+|++  +   +.....                        .. ...     
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~---gg~~~~------------------------~~-~~~-----   59 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P---GGQLTE------------------------AG-IVD-----   59 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T---TGGGGG------------------------CC-EEC-----
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C---CCeecc------------------------cc-ccc-----
Confidence            579999999999999999999999999999987  1   110000                        00 000     


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                            .++.      ..  .+....+.+.+.+.+  .++++++ ++|++++.+++.+.+++.++.++.+|.||.|+|..
T Consensus        60 ------~~~~------~~--~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           60 ------DYLG------LI--EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             ------CSTT------ST--TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             ------ccCC------CC--CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence                  0000      00  133455555555433  3688888 99999998888899999998899999999999987


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      .
T Consensus       125 ~  125 (323)
T 3f8d_A          125 R  125 (323)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.31  E-value=4.2e-12  Score=115.85  Aligned_cols=118  Identities=16%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|++.|++|+|+|+.........+. +..                 .    .  ...    
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-~~~-----------------~----~--~~~----   58 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ-LTT-----------------T----T--DVE----   58 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG-GGG-----------------C----S--EEC----
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce-eee-----------------c----c--ccc----
Confidence            35799999999999999999999999999999821100000000 000                 0    0  000    


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                             .++.      . ...+.+..+.+.|.+.+  .++++++++ |+.++.+++.++|++ ++.++++|.||+|+|.
T Consensus        59 -------~~~~------~-~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~  122 (333)
T 1vdc_A           59 -------NFPG------F-PEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGA  122 (333)
T ss_dssp             -------CSTT------C-TTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCE
T ss_pred             -------cCCC------C-ccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCC
Confidence                   0000      0 01234555666555443  368898887 999988777788888 7778999999999998


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ++..
T Consensus       123 ~~~~  126 (333)
T 1vdc_A          123 VAKR  126 (333)
T ss_dssp             EECC
T ss_pred             CcCC
Confidence            7643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.31  E-value=2.2e-11  Score=109.91  Aligned_cols=112  Identities=18%  Similarity=0.207  Sum_probs=79.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +||+||||||+|+++|..|++.|+ +|+|+|+...    + +.....                  .    ..  .     
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~----g-g~~~~~------------------~----~~--~-----   47 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMP----G-GQITGS------------------S----EI--E-----   47 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSST----T-CGGGGC------------------S----CB--C-----
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCC----C-cccccc------------------c----cc--c-----
Confidence            799999999999999999999999 9999998521    1 110000                  0    00  0     


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                            .++..       ...+.+..+.+.+.+.+  .++++++ ++|++++.+++.+.+++.++.++++|.||.|+|.+
T Consensus        48 ------~~~~~-------~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           48 ------NYPGV-------KEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             ------CSTTC-------CSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEE
T ss_pred             ------cCCCC-------cccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCC
Confidence                  00000       01245556666665533  3678887 79999998888888888888889999999999987


Q ss_pred             hHH
Q 015303          162 SIV  164 (409)
Q Consensus       162 S~v  164 (409)
                      +..
T Consensus       114 ~~~  116 (311)
T 2q0l_A          114 PKR  116 (311)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.30  E-value=2.2e-11  Score=110.32  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|++.|++|+|+|+...    +.......                       ...    
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg~~~~~~-----------------------~~~----   61 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVA----GGLTAEAP-----------------------LVE----   61 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSST----TGGGGGCS-----------------------CBC----
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC----Cccccccc-----------------------hhh----
Confidence            44568999999999999999999999999999998521    11000000                       000    


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                               .++.      .  ..+.+..+.+.+.+.+  .++++++ ++|+.++.+++.+.|.+ ++.++.+|.||.|+
T Consensus        62 ---------~~~~------~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~At  122 (319)
T 3cty_A           62 ---------NYLG------F--KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITT  122 (319)
T ss_dssp             ---------CBTT------B--SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECC
T ss_pred             ---------hcCC------C--cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECC
Confidence                     0000      0  0133445555554433  2678877 78999998888888877 55679999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |.++.
T Consensus       123 G~~~~  127 (319)
T 3cty_A          123 GTTHK  127 (319)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.30  E-value=1.3e-11  Score=112.78  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|++.|++|+|+|+.+.......+.....                        ....    
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~------------------------~~~~----   72 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT------------------------TEIE----   72 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS------------------------SEEC----
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc------------------------hhhc----
Confidence            458999999999999999999999999999999762211111100000                        0000    


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEec---CCcEEeccEEEec
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA---DGTILKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~~~ad~vV~A  157 (409)
                             .++..       ...+.+..+...+.+.+  .++++++++ |++++.+++.+.+++.   ++.++.+|.||.|
T Consensus        73 -------~~~~~-------~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlA  137 (338)
T 3itj_A           73 -------NFPGF-------PDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILA  137 (338)
T ss_dssp             -------CSTTC-------TTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEEC
T ss_pred             -------ccCCC-------cccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEEC
Confidence                   00000       00134455555555443  278999988 9999988888888884   6678999999999


Q ss_pred             CCCchH
Q 015303          158 DGVNSI  163 (409)
Q Consensus       158 dG~~S~  163 (409)
                      +|..+.
T Consensus       138 tG~~~~  143 (338)
T 3itj_A          138 TGASAK  143 (338)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.29  E-value=3e-11  Score=116.89  Aligned_cols=133  Identities=16%  Similarity=0.176  Sum_probs=85.2

Q ss_pred             cccEEEECCChHHHHHHHHHH-HcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLY-RLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~-~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+|||||++|+++|..|+ +.|++|+|+|+++......          .....-|+...+...     .        
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw----------~~~~ypg~~~d~~s~-----~--------   64 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW----------YWNRYPGALSDTESH-----L--------   64 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHH----------HHCCCTTCEEEEEGG-----G--------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcc----------cccCCCCceecCCcc-----e--------
Confidence            479999999999999999999 9999999999986532100          000000110000000     0        


Q ss_pred             CCcccccccccc-cccCCccceeccHHHHHHHHHhhCC--Cc--eEEeCCeEEEEEEeCC--eEEEEecCCcEEeccEEE
Q 015303           83 GKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKELP--SG--TIRYSSQVVSIEESGH--FKLLHLADGTILKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~~--~v~v~~~~g~~~~ad~vV  155 (409)
                          ....+... ............+..+.+++.+.+.  ++  .++++++|++++.+++  .|+|++.+|++++||+||
T Consensus        65 ----~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV  140 (540)
T 3gwf_A           65 ----YRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVV  140 (540)
T ss_dssp             ----SSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             ----eeeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEE
Confidence                00000000 0000111224567777777665442  44  7999999999998776  799999999999999999


Q ss_pred             ecCCCchH
Q 015303          156 GCDGVNSI  163 (409)
Q Consensus       156 ~AdG~~S~  163 (409)
                      .|+|..|.
T Consensus       141 ~AtG~~s~  148 (540)
T 3gwf_A          141 NAVGLLSA  148 (540)
T ss_dssp             ECCCSCCS
T ss_pred             ECCccccc
Confidence            99998763

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.28  E-value=1e-10  Score=112.73  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             HHHHHHHhhC--CC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          109 LLLETLAKEL--PS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       109 ~l~~~L~~~~--~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .+.+.|.+.+  .+ ++|+++++|++|+.+++++.|++.+|++++||.||.|.|....
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL  313 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHH
Confidence            3444454443  24 7799999999999888889999999988999999999997643

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.28  E-value=2e-10  Score=110.04  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             HHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303          110 LLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       110 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      |.+.|.+.+  .+++|+++++|++|+.++++ +.|++ ++.+++||.||.|.+.+..
T Consensus       236 l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~~~  291 (477)
T 3nks_A          236 LPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASVL  291 (477)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHHHH
Confidence            455555544  36899999999999987766 88876 4557999999999987644

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.28  E-value=2.1e-11  Score=118.51  Aligned_cols=134  Identities=16%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++.+...   .       .    .+..          .+... +  .
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~---w-------~----~~~~----------pg~~~-d--~   67 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV---W-------Y----WNRY----------PGARC-D--I   67 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH---H-------H----HCCC----------TTCBC-S--S
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCc---c-------c----ccCC----------Cceee-c--c
Confidence            3589999999999999999999999999999998763211   0       0    0000          00000 0  0


Q ss_pred             CCcccccccccc-cccCCccceeccHHHHHHHHHhhC---C-CceEEeCCeEEEEEEeCC--eEEEEecCCcEEeccEEE
Q 015303           83 GKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKEL---P-SGTIRYSSQVVSIEESGH--FKLLHLADGTILKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~---~-~~~i~~~~~v~~i~~~~~--~v~v~~~~g~~~~ad~vV  155 (409)
                      ......+.+... ............+..+.++|...+   . +.+++++++|++++.+++  .|+|++.+|++++||+||
T Consensus        68 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV  147 (542)
T 1w4x_A           68 ESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI  147 (542)
T ss_dssp             CTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEE
T ss_pred             cccccccccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEE
Confidence            000000000000 000001112345666766665432   2 367999999999988754  699999999889999999


Q ss_pred             ecCCCchH
Q 015303          156 GCDGVNSI  163 (409)
Q Consensus       156 ~AdG~~S~  163 (409)
                      .|+|.+|.
T Consensus       148 ~AtG~~s~  155 (542)
T 1w4x_A          148 MASGQLSV  155 (542)
T ss_dssp             ECCCSCCC
T ss_pred             ECcCCCCC
Confidence            99998874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.28  E-value=2.7e-11  Score=110.04  Aligned_cols=113  Identities=18%  Similarity=0.248  Sum_probs=76.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|..|++.|++|+|+|+. .+   +......                       ...  . ...
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~---gg~~~~~-----------------------~~~--~-~~~   56 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MP---GGQIAWS-----------------------EEV--E-NFP   56 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CT---TGGGGGC-----------------------SCB--C-CST
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CC---Ccccccc-----------------------ccc--c-cCC
Confidence            3589999999999999999999999999999998 21   1100000                       000  0 000


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe--CCe-EEEEecCCcEEeccEEEec
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES--GHF-KLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vV~A  157 (409)
                      +       +.          ..+.+..+.+.+.+.+  .++++++ ++|++++.+  ++. +.+.+.++.++++|.||.|
T Consensus        57 ~-------~~----------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~A  118 (325)
T 2q7v_A           57 G-------FP----------EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILA  118 (325)
T ss_dssp             T-------CS----------SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEEC
T ss_pred             C-------CC----------CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEEC
Confidence            0       00          0133445555554433  2678887 689999876  444 7777888889999999999


Q ss_pred             CCCchH
Q 015303          158 DGVNSI  163 (409)
Q Consensus       158 dG~~S~  163 (409)
                      +|..+.
T Consensus       119 tG~~~~  124 (325)
T 2q7v_A          119 TGADPR  124 (325)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            998653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.26  E-value=2.1e-11  Score=110.56  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ||+++||+||||||+|+++|..|++.|++|+|+|+...    +.......                       ..     
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg~~~~~~-----------------------~~-----   49 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK----GGQLTTTT-----------------------EV-----   49 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST----TGGGGGCS-----------------------BC-----
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCC----CceEecch-----------------------hh-----
Confidence            45568999999999999999999999999999996421    11000000                       00     


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                       ..       ++..       ...+.+..+.+.+.+.+  .++++++++ ++.++.+++.+.+ +.++.++.+|.||.|+
T Consensus        50 -~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~At  112 (320)
T 1trb_A           50 -EN-------WPGD-------PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIAT  112 (320)
T ss_dssp             -CC-------STTC-------CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECC
T ss_pred             -hh-------CCCC-------CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECC
Confidence             00       0000       00133445555544433  368888886 9999887777887 6777889999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |..+.
T Consensus       113 G~~~~  117 (320)
T 1trb_A          113 GASAR  117 (320)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.25  E-value=3.3e-11  Score=111.47  Aligned_cols=138  Identities=14%  Similarity=0.173  Sum_probs=80.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +++||+||||||+|+++|..|++.|+ +|+|||+++ +   +......+...      .+    ...........+....
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~---Gg~~~~~~~~~------~~----~~~~~~~~~~g~~~~~   68 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-V---GHSFKHWPKST------RT----ITPSFTSNGFGMPDMN   68 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-T---THHHHTSCTTC------BC----SSCCCCCGGGTCCCTT
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-C---CCccccCcccc------cc----cCcchhcccCCchhhh
Confidence            45899999999999999999999999 999999986 2   11000000000      00    0000000000000000


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .... ..  ....    ......+.+..+.+.+.+.+  .+++++++++|++++.+++.+.|++.++ ++.+|.||.|+|
T Consensus        69 ~~~~-~~--~~~~----~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG  140 (369)
T 3d1c_A           69 AISM-DT--SPAF----TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATG  140 (369)
T ss_dssp             CSST-TC--CHHH----HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCC
T ss_pred             hccc-cc--cccc----cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCC
Confidence            0000 00  0000    00011244555655554432  3789999999999998877888888777 589999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      .++
T Consensus       141 ~~~  143 (369)
T 3d1c_A          141 DYN  143 (369)
T ss_dssp             STT
T ss_pred             CCC
Confidence            875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.25  E-value=4.3e-11  Score=114.00  Aligned_cols=146  Identities=16%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCc---eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR---LGIR---SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~---~g~~---V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      +||+||||||+|+++|..|++   .|++   |+|||+.+.+..   .....+.. . ...+|+.  .  ....+..... 
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG---~w~~~~~~-g-~~~~g~~--~--~~~~y~~l~~-   72 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG---QWNYTWRT-G-LDENGEP--V--HSSMYRYLWS-   72 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG---GGSCCSCC-S-BCTTSSB--C--CCCCCTTCBC-
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC---EeecCCCC-C-ccccCCC--C--cCccccchhh-
Confidence            699999999999999999999   9999   999999865321   11000000 0 0001110  0  0000000000 


Q ss_pred             ecCCCCccccccccccc---ccCCccceeccHHHHHHHHHhhCC--Cce--EEeCCeEEEEEEeCC--eEEEEecC---C
Q 015303           79 PTISGKPSSERSLKVQG---KYGEHEMRCVRRKLLLETLAKELP--SGT--IRYSSQVVSIEESGH--FKLLHLAD---G  146 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~~--~v~v~~~~---g  146 (409)
                          ......+.+...+   .........+.+..+.++|.+.+.  +++  ++++++|++++..++  .|+|++.+   |
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g  148 (464)
T 2xve_A           73 ----NGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD  148 (464)
T ss_dssp             ----SSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT
T ss_pred             ----cCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC
Confidence                0000001111100   000001224667788877766542  555  899999999998776  78887765   3


Q ss_pred             --cEEeccEEEecCCCchHH
Q 015303          147 --TILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       147 --~~~~ad~vV~AdG~~S~v  164 (409)
                        .++.+|.||+|+|.+|.-
T Consensus       149 ~~~~~~~d~VVvAtG~~s~p  168 (464)
T 2xve_A          149 TIYSEEFDYVVCCTGHFSTP  168 (464)
T ss_dssp             EEEEEEESEEEECCCSSSSB
T ss_pred             ceEEEEcCEEEECCCCCCCC
Confidence              468999999999976643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.25  E-value=5.2e-11  Score=109.41  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC------CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG------IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g------~~V~v~E~~~~   38 (409)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            39999999999999999999998      99999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.24  E-value=3.9e-11  Score=109.51  Aligned_cols=113  Identities=20%  Similarity=0.263  Sum_probs=75.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++++||+||||||+|+++|..|++.|++|+|+|+...   .+ ......                       ..      
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---gg-~~~~~~-----------------------~~------   58 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSF---GG-ALMTTT-----------------------DV------   58 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSC---SC-GGGSCS-----------------------CB------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC---CC-ceeccc-----------------------hh------
Confidence            3468999999999999999999999999999996521   11 000000                       00      


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEE-EecCCcEEeccEEEecC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLL-HLADGTILKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v-~~~~g~~~~ad~vV~Ad  158 (409)
                      .       .++..       ...+.+..+.+.+.+.+  .++++++++ +++++. ++.++| .+.++.++++|.||.|+
T Consensus        59 ~-------~~~~~-------~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAt  122 (335)
T 2a87_A           59 E-------NYPGF-------RNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAM  122 (335)
T ss_dssp             C-------CSTTC-------TTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECC
T ss_pred             h-------hcCCC-------CCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECC
Confidence            0       00000       00133445555554432  268898887 888887 556777 78888889999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |..+.
T Consensus       123 G~~~~  127 (335)
T 2a87_A          123 GAAAR  127 (335)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.24  E-value=5.9e-10  Score=107.57  Aligned_cols=64  Identities=22%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc-------c-----ceec---cccHHHHHHHcCchhH
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG-------F-----AFTV---WTNAWKALDAVGIGNS   64 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-------~-----~~~~---~~~~~~~l~~~gl~~~   64 (409)
                      |++.+||+|||||++||++|+.|+++|++|+|+|+++.+....       .     ...+   .+...++++++|+.+.
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            3446899999999999999999999999999999987653211       0     0111   2456788888887543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.23  E-value=2.9e-11  Score=117.14  Aligned_cols=133  Identities=16%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHc-CchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAV-GIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +++||+|||||++|+++|+.|++.|++|+|||+++.....          .. ...+ |+..+.       .        
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGt----------w~-~~~yPg~~~d~-------~--------   61 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT----------WY-WNRYPGCRLDT-------E--------   61 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH----------HH-HCCCTTCBCSS-------C--------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----------cc-cCCCCceeecC-------c--------
Confidence            3579999999999999999999999999999998653211          00 0000 000000       0        


Q ss_pred             CCCccccccccccc-ccCCccceeccHHHHHHHHHhhCC--Cc--eEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEE
Q 015303           82 SGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKELP--SG--TIRYSSQVVSIEESG--HFKLLHLADGTILKTKVL  154 (409)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~v  154 (409)
                        .....+.+.... ...........+..+.+++.+.+.  ++  .++++++|++++.++  +.|.|++.+|++++||+|
T Consensus        62 --~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~l  139 (545)
T 3uox_A           62 --SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFL  139 (545)
T ss_dssp             --HHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEE
T ss_pred             --hhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEE
Confidence              000000000000 000111123455666666654332  33  789999999998765  479999999989999999


Q ss_pred             EecCCCchH
Q 015303          155 IGCDGVNSI  163 (409)
Q Consensus       155 V~AdG~~S~  163 (409)
                      |.|+|..|.
T Consensus       140 V~AtG~~s~  148 (545)
T 3uox_A          140 ISATGPLSA  148 (545)
T ss_dssp             EECCCSCBC
T ss_pred             EECcCCCCC
Confidence            999997663

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.23  E-value=7.6e-11  Score=114.30  Aligned_cols=133  Identities=19%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+|||||++|+++|+.|++.|++|+|||+++.....          ...-..-|+..++...     .        
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGt----------w~~~~ypg~~~dv~s~-----~--------   76 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV----------WYWNRYPGARCDVESI-----D--------   76 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH----------HHHCCCTTCBCSSCTT-----T--------
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----------cccCCCCCceeCCCch-----h--------
Confidence            3579999999999999999999999999999998653210          0000000110000000     0        


Q ss_pred             CCcccccccccc-cccCCccceeccHHHHHHHHHhhCC--Cc--eEEeCCeEEEEEEeCC--eEEEEecCCcEEeccEEE
Q 015303           83 GKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKELP--SG--TIRYSSQVVSIEESGH--FKLLHLADGTILKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~~--~v~v~~~~g~~~~ad~vV  155 (409)
                          ....+... ............+..+.+++.+.+.  ++  .++++++|++++.+++  .|+|++.+|++++||+||
T Consensus        77 ----y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV  152 (549)
T 4ap3_A           77 ----YSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLV  152 (549)
T ss_dssp             ----SSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEE
T ss_pred             ----cccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEE
Confidence                00000000 0000111123456667766655431  34  7999999999988765  799999999999999999


Q ss_pred             ecCCCch
Q 015303          156 GCDGVNS  162 (409)
Q Consensus       156 ~AdG~~S  162 (409)
                      .|+|..|
T Consensus       153 ~AtG~~s  159 (549)
T 4ap3_A          153 VAAGPLS  159 (549)
T ss_dssp             ECCCSEE
T ss_pred             ECcCCCC
Confidence            9999765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.23  E-value=3.6e-11  Score=109.45  Aligned_cols=114  Identities=23%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+.+...                   +...    .+  ......    
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~-------------------~~~~----~~--~~~~~~----   57 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQ-------------------LSAL----YP--EKYIYD----   57 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH-------------------HHHH----CT--TSEECC----
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce-------------------ehhc----CC--CceEec----
Confidence            479999999999999999999999999999998752200                   0000    00  000000    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                             +.        ....+.+..+...+.+.+.  +++++++++|++++..++ .+.|++.+++ +.+|.||.|+|.
T Consensus        58 -------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           58 -------VA--------GFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             -------ST--------TCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             -------cC--------CCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence                   00        0001345666666665543  689999999999998876 7889998887 999999999998


Q ss_pred             ch
Q 015303          161 NS  162 (409)
Q Consensus       161 ~S  162 (409)
                      .+
T Consensus       122 ~~  123 (332)
T 3lzw_A          122 GA  123 (332)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.22  E-value=5.7e-11  Score=107.13  Aligned_cols=111  Identities=20%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|+...    +  ....        ..              .  ...    
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~g----G--~~~~--------~~--------------~--~~~----   46 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG----G--QILD--------TV--------------D--IEN----   46 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT----G--GGGG--------CC--------------E--ECC----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC----c--eecc--------cc--------------c--ccc----
Confidence            47999999999999999999999999999986411    1  0000        00              0  000    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC---CeEEEEecCCcEEeccEEEecC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG---HFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                             +.        ......+..+.+.+.+.+  .+++++++++|+.++.+.   +.+.|++.++.++++|.||.|+
T Consensus        47 -------~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~At  111 (310)
T 1fl2_A           47 -------YI--------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVAT  111 (310)
T ss_dssp             -------BT--------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECC
T ss_pred             -------cc--------CcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECc
Confidence                   00        000123344555554433  378999999999997653   3688989888889999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |..+.
T Consensus       112 G~~~~  116 (310)
T 1fl2_A          112 GAKWR  116 (310)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98653

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.22  E-value=4.1e-11  Score=120.09  Aligned_cols=50  Identities=24%  Similarity=0.260  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+   +++|+++++|++|+.++++++|++.+|.+++||.||.|....
T Consensus       535 ~l~~aLa~---gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~  584 (776)
T 4gut_A          535 VIIEKLAE---GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA  584 (776)
T ss_dssp             HHHHHHHT---TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHH
T ss_pred             HHHHHHHh---CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHH
Confidence            44455543   678999999999999888999999999899999999999743

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.19  E-value=2.1e-10  Score=110.72  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||||++|+++|+.|+++|.+|+|+||.+.+
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.18  E-value=8.5e-11  Score=106.15  Aligned_cols=119  Identities=20%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+..|||+||||||||+++|..|+++|++|+|+|+......... ..+.+                       ...+.+ 
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~-G~~~~-----------------------~~~i~~-   55 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG-GQLTT-----------------------TTIIEN-   55 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT-CGGGG-----------------------SSEECC-
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC-CCcCC-----------------------hHHhhh-
Confidence            77779999999999999999999999999999998753111100 00000                       000000 


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ..+       ++          ..+...++.+.+.+.+  .+.++. ...+.......+...+.+.++.++++|.||.|+
T Consensus        56 ~~g-------~~----------~~i~~~~l~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiAT  117 (314)
T 4a5l_A           56 FPG-------FP----------NGIDGNELMMNMRTQSEKYGTTII-TETIDHVDFSTQPFKLFTEEGKEVLTKSVIIAT  117 (314)
T ss_dssp             STT-------CT----------TCEEHHHHHHHHHHHHHHTTCEEE-CCCEEEEECSSSSEEEEETTCCEEEEEEEEECC
T ss_pred             ccC-------Cc----------ccCCHHHHHHHHHHHHhhcCcEEE-EeEEEEeecCCCceEEEECCCeEEEEeEEEEcc
Confidence            000       00          0133344444444332  134444 445666666667777788888899999999999


Q ss_pred             CCch
Q 015303          159 GVNS  162 (409)
Q Consensus       159 G~~S  162 (409)
                      |...
T Consensus       118 G~~~  121 (314)
T 4a5l_A          118 GATA  121 (314)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            9753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.13  E-value=6.9e-10  Score=108.72  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhC--CC-ceEEeCCeEEEEEEeCCeE---EEE-ecCCc--EEeccEEEecCCCchHHHhhh
Q 015303          108 KLLLETLAKEL--PS-GTIRYSSQVVSIEESGHFK---LLH-LADGT--ILKTKVLIGCDGVNSIVAKWL  168 (409)
Q Consensus       108 ~~l~~~L~~~~--~~-~~i~~~~~v~~i~~~~~~v---~v~-~~~g~--~~~ad~vV~AdG~~S~vr~~l  168 (409)
                      ..+...|.+.+  .+ ++++++++|+++..+++.+   .+. ..+|+  ++.|+.||+|+|.+|.++...
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            46666666654  24 8999999999998877753   222 25665  689999999999999886544

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.13  E-value=5.1e-10  Score=106.85  Aligned_cols=145  Identities=15%  Similarity=0.156  Sum_probs=82.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-----CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-----IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-----~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      .+||+||||||+|+++|..|++.|     ++|+|||+.+....... ..+....+.    .....++.....+.....+.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~-~~~~~~~~~----~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGN-TLVSQSELQ----ISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGG-GCCSSCBCS----SCTTSSSSTTTCTTCTTSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCC-CCCCCCcCC----cchhhccccccCCCCCCChh
Confidence            469999999999999999999999     99999999986542210 000000000    00000000000000000000


Q ss_pred             e--cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEe---CCe--EEEEecCCc--
Q 015303           79 P--TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES---GHF--KLLHLADGT--  147 (409)
Q Consensus        79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~---~~~--v~v~~~~g~--  147 (409)
                      .  ...+..   ..+.      ........+..+.+++...+.  +++++++++|++++..   ++.  ++|++.++.  
T Consensus       105 ~~l~~~~~~---~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~  175 (463)
T 3s5w_A          105 NYLHKHDRL---VDFI------NLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGE  175 (463)
T ss_dssp             HHHHHTTCH---HHHH------HHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSC
T ss_pred             HhhhhcCce---eecc------cccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCc
Confidence            0  000000   0000      011123467777777765442  5789999999999876   433  477777765  


Q ss_pred             --EEeccEEEecCCCch
Q 015303          148 --ILKTKVLIGCDGVNS  162 (409)
Q Consensus       148 --~~~ad~vV~AdG~~S  162 (409)
                        ++.+|.||+|+|...
T Consensus       176 ~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          176 ELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             EEEEEESEEEECCCCEE
T ss_pred             eEEEEeCEEEECCCCCC
Confidence              899999999999744

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.12  E-value=6.1e-10  Score=108.76  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||+|++|+++|+.|++.|++|+|+|+.+.+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP  161 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            479999999999999999999999999999998765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.12  E-value=3.8e-10  Score=109.04  Aligned_cols=112  Identities=22%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||+|+++|..|++.|++|+|+|+..     + |....        ..++              ..+    
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~-----G-G~~~~--------~~~~--------------~~~----  258 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF-----G-GQVLD--------TVDI--------------ENY----  258 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST-----T-GGGTT--------CSCB--------------CCB----
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC-----C-Ccccc--------cccc--------------ccc----
Confidence            35899999999999999999999999999998631     1 11000        0000              000    


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe---CCeEEEEecCCcEEeccEEEec
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~---~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                            ...           ....+..+...+.+.+  .+++++.+++|+.++.+   ++.+.|++.+|.++++|.||.|
T Consensus       259 ------~~~-----------~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlA  321 (521)
T 1hyu_A          259 ------ISV-----------PKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIA  321 (521)
T ss_dssp             ------TTB-----------SSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEEC
T ss_pred             ------CCC-----------CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEEC
Confidence                  000           0123345555554433  37899999999999764   2368899999988999999999


Q ss_pred             CCCchH
Q 015303          158 DGVNSI  163 (409)
Q Consensus       158 dG~~S~  163 (409)
                      +|..+.
T Consensus       322 tG~~~~  327 (521)
T 1hyu_A          322 TGAKWR  327 (521)
T ss_dssp             CCEEEC
T ss_pred             CCCCcC
Confidence            998653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.10  E-value=1.4e-10  Score=111.10  Aligned_cols=39  Identities=21%  Similarity=0.475  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+.++||+||||||+|+++|..|++.|++|+|+|+++.+
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            445789999999999999999999999999999997553

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.09  E-value=2.3e-10  Score=110.81  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++|+++|+.|++ |.+|+|+||....
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            5899999999999999999999 9999999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.09  E-value=9.6e-11  Score=112.27  Aligned_cols=146  Identities=17%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+.++||+||||||+|+++|..|++.|++|+|+|+++.+..........| +..++...++++.+... ....++...  
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p-sk~l~~~~~~~~~~~~~-~~~~gi~~~--   77 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIP-SKALLNNSHLFHQMHTE-AQKRGIDVN--   77 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH-HHHHHHHHHHHHHHHHT-SGGGTEEEC--
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHH-HHHHHHHHHHHHHHHHH-HHhcCcccC--
Confidence            45578999999999999999999999999999999654321100000111 23333333333333211 111122110  


Q ss_pred             CCCCcccccccccccccCCccceecc--HHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC--cE------Ee
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVR--RKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG--TI------LK  150 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~--r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~------~~  150 (409)
                       ..   ..+++.....   .....+.  +..+.+.+. . .++++++++.+..   +++.++|++.+|  .+      ++
T Consensus        78 -~~---~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~-~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~  145 (478)
T 1v59_A           78 -GD---IKINVANFQK---AKDDAVKQLTGGIELLFK-K-NKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILD  145 (478)
T ss_dssp             -SC---EEECHHHHHH---HHHHHHHHHHHHHHHHHH-H-TTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEE
T ss_pred             -CC---CccCHHHHHH---HHHHHHHHHHHHHHHHHH-h-CCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEE
Confidence             00   0111110000   0000000  011222232 2 3789999887652   456788888777  56      99


Q ss_pred             ccEEEecCCCch
Q 015303          151 TKVLIGCDGVNS  162 (409)
Q Consensus       151 ad~vV~AdG~~S  162 (409)
                      +|.||+|+|..+
T Consensus       146 ~d~lViAtGs~p  157 (478)
T 1v59_A          146 VKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEECCCEEE
T ss_pred             eCEEEECcCCCC
Confidence            999999999876

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.06  E-value=1e-09  Score=106.18  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhhCCCceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCch
Q 015303          107 RKLLLETLAKELPSGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       107 r~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      -..+.+.|.+.+++.+|+++++|+.|..+ ++.+.|++.+|++++||.||.|.+...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~  257 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSV  257 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHH
Confidence            34555666666666789999999999986 567999999998899999999998653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.06  E-value=1.2e-09  Score=98.41  Aligned_cols=36  Identities=33%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             CCC-cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MES-VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~-~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |++ +|||+||||||||+++|..|++.|++|+|||+.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~   38 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG   38 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            654 699999999999999999999999999999986

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.06  E-value=6.4e-10  Score=104.93  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=73.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |++++||+|||||++|+++|..|++.|+  +|+|+|+.+......     .+          +...+..           
T Consensus         1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~-----~~----------l~~~~~~-----------   54 (431)
T 1q1r_A            1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL-----PP----------LSKAYLA-----------   54 (431)
T ss_dssp             -CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS-----GG----------GGTTTTT-----------
T ss_pred             CCCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC-----CC----------CcHHHhC-----------
Confidence            6667899999999999999999999998  799999875421110     00          0000000           


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                         .......+.              +.   +.+.+.+  .+++++++++|+.++.++.  .|++.+|+++.+|.||.|+
T Consensus        55 ---~~~~~~~~~--------------~~---~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAt  110 (431)
T 1q1r_A           55 ---GKATAESLY--------------LR---TPDAYAA--QNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLAT  110 (431)
T ss_dssp             ---TCSCSGGGB--------------SS---CHHHHHH--TTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECC
T ss_pred             ---CCCChHHhc--------------cc---CHHHHHh--CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcC
Confidence               000000000              00   1122322  2789999999999987655  5666788889999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |..+.
T Consensus       111 G~~p~  115 (431)
T 1q1r_A          111 GGRPR  115 (431)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.05  E-value=6e-10  Score=106.30  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++++||+||||||+|+++|..|++.|++|+|+||++.
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~   38 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE   38 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            66779999999999999999999999999999998765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.05  E-value=1.5e-09  Score=103.37  Aligned_cols=59  Identities=15%  Similarity=0.070  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEec-CCcEEeccEEEecCCCchHHHhh
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA-DGTILKTKVLIGCDGVNSIVAKW  167 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~-~g~~~~ad~vV~AdG~~S~vr~~  167 (409)
                      ..+.+.|.+.+  .+++++++++| ++..+++.+. +... ++.++.+|.||.|+|.+|.+...
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~  181 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEY  181 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSS
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCcc
Confidence            45555555543  47999999999 9987777642 3332 22347899999999999987543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.04  E-value=2e-10  Score=109.53  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccc---cHHHHHHHcCchhHHHhccccccceeeee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWT---NAWKALDAVGIGNSLRQQHQQLRSIVATP   79 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~---~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      +++||+||||||+|+++|..|++.|++|+|+|++..    + +..+..   .+..++...++++.+..... ..++.  .
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~----g-G~~~~~g~~psk~ll~~~~~~~~~~~~~~-~~g~~--~   73 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYW----G-GVCLNVGCIPSKALLRNAELVHIFTKDAK-AFGIS--G   73 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCT----T-HHHHHHSHHHHHHHHHHHHHHHHHHHHTT-TTTEE--E
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC----C-CcccccCchhhHHHHHHHHHHHHHHHHHH-hcCCC--C
Confidence            358999999999999999999999999999999722    1 111111   12333443334443331111 11111  0


Q ss_pred             cCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEE
Q 015303           80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLI  155 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV  155 (409)
                        .    ...++.....   .....+  ..+.+.+.+.+  .+++++.++.+.   .+.+.+++.+.+|  .++++|.||
T Consensus        74 --~----~~~~~~~~~~---~~~~~~--~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lV  139 (464)
T 2a8x_A           74 --E----VTFDYGIAYD---RSRKVA--EGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAI  139 (464)
T ss_dssp             --C----CEECHHHHHH---HHHHHH--HHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEE
T ss_pred             --C----CccCHHHHHH---HHHHHH--HHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEE
Confidence              0    0111110000   000000  12222222211  378888887653   3456788888888  679999999


Q ss_pred             ecCCCchHH
Q 015303          156 GCDGVNSIV  164 (409)
Q Consensus       156 ~AdG~~S~v  164 (409)
                      +|+|..+..
T Consensus       140 iAtG~~~~~  148 (464)
T 2a8x_A          140 IATGSSTRL  148 (464)
T ss_dssp             ECCCEEECC
T ss_pred             ECCCCCCCC
Confidence            999987743

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.03  E-value=2.5e-09  Score=104.73  Aligned_cols=57  Identities=16%  Similarity=0.011  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEe---cCCc--EEeccEEEecCCCchHH
Q 015303          108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHL---ADGT--ILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~---~~g~--~~~ad~vV~AdG~~S~v  164 (409)
                      ..+...|.+.+  .+++|+++++|+++..+++.+. |..   .+|+  ++.|+.||.|+|..+.+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            46666776654  4789999999999987776532 332   4565  68999999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.02  E-value=2.7e-09  Score=102.56  Aligned_cols=54  Identities=9%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303          108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN  161 (409)
Q Consensus       108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                      ..|.+.|.+.++..+|+++++|++|+.++++++|++.+|   ++++||.||.|...+
T Consensus       239 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            456666776664478999999999999999999998876   579999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.01  E-value=9.1e-10  Score=105.26  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.++||+||||||+|+++|..|++.|++|+|+|+++.+..........| +..++....+.+.+... ....++..   .
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p-~k~l~~~~~~~~~~~~~-~~~~g~~~---~   78 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIP-SKALLHSSHMYHEAKHS-FANHGVKV---S   78 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHH-HHHHHHHHHHHHHHHHT-HHHHTEEE---S
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccc-hHHHHHHHHHHHHHHHH-HHhcCccc---C
Confidence            3468999999999999999999999999999999865421110011111 11122111111222110 00001110   0


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG  159 (409)
                      .    ...++...-.. .......-+..+.+.+.+  .+++++.++.+. +  +.+.+.|++.+|  .++++|.||+|+|
T Consensus        79 ~----~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~gv~~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtG  148 (470)
T 1dxl_A           79 N----VEIDLAAMMGQ-KDKAVSNLTRGIEGLFKK--NKVTYVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATG  148 (470)
T ss_dssp             C----EEECHHHHHHH-HHHHHHHHHHHHHHHHHH--HTCEEEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCC
T ss_pred             C----CccCHHHHHHH-HHHHHHHHHHHHHHHHHh--CCCEEEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCC
Confidence            0    00111100000 000000000112222222  268999988664 3  456788887777  6799999999999


Q ss_pred             CchHHH
Q 015303          160 VNSIVA  165 (409)
Q Consensus       160 ~~S~vr  165 (409)
                      ..+...
T Consensus       149 s~p~~p  154 (470)
T 1dxl_A          149 SDVKSL  154 (470)
T ss_dssp             EEECCB
T ss_pred             CCCCCC
Confidence            876543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.01  E-value=3e-09  Score=103.97  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++|+++|+.|++.|.+|+|+||....
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            589999999999999999999999999999998654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.99  E-value=3.6e-09  Score=104.33  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=33.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++||++|+.|++.|.+|+|+||....
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            589999999999999999999999999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.99  E-value=4.5e-09  Score=94.70  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEE-EeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMV-LESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v-~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+|+++|..|++.|++|+| +||. .+   + +.....                   .   .  ..   
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~---g-G~~~~~-------------------~---~--~~---   50 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MP---G-GQITSS-------------------S---E--IE---   50 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-ST---T-GGGGGC-------------------S---C--BC---
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CC---C-ceeeee-------------------c---e--ec---
Confidence            458999999999999999999999999999 9993 22   1 110000                   0   0  00   


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeC--CeEEEEe-cCCcEEeccEEEe
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESG--HFKLLHL-ADGTILKTKVLIG  156 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~-~~g~~~~ad~vV~  156 (409)
                              .++.       ....+....+...+.+.+.  +++++++ +|+++ .++  +.+.++. .++ ++.+|.||.
T Consensus        51 --------~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvl  112 (315)
T 3r9u_A           51 --------NYPG-------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIV  112 (315)
T ss_dssp             --------CSTT-------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEE
T ss_pred             --------cCCC-------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEE
Confidence                    0000       0002345566666655442  6788888 89999 766  6777523 333 899999999


Q ss_pred             cCCCc
Q 015303          157 CDGVN  161 (409)
Q Consensus       157 AdG~~  161 (409)
                      |+|..
T Consensus       113 AtG~~  117 (315)
T 3r9u_A          113 CTGSA  117 (315)
T ss_dssp             CCCEE
T ss_pred             eeCCC
Confidence            99974

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.98  E-value=5.1e-09  Score=99.58  Aligned_cols=52  Identities=12%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCch
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      .+.+.|.+.+ +++|+++++|++|..++++ +.|++ ++.+++||.||.|.+...
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~  268 (453)
T 2yg5_A          216 QVSIRMAEAL-GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNL  268 (453)
T ss_dssp             HHHHHHHHHH-GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGG
T ss_pred             HHHHHHHHhc-CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHH
Confidence            4445555544 5789999999999998888 88876 667899999999999863

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.97  E-value=4e-09  Score=101.10  Aligned_cols=45  Identities=13%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                      +++++.+++|+.++.+++++.+++.+|+++.+|.||.|+|..+..
T Consensus       246 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             TCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            789999999999998888889999999899999999999986543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.95  E-value=2.1e-09  Score=103.22  Aligned_cols=37  Identities=22%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+++||+||||||+|+++|..|++.|++|+|+|+++.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4568999999999999999999999999999998755

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.93  E-value=1.5e-08  Score=95.47  Aligned_cols=54  Identities=15%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      ..+.+.|.+.+ +.+++++++|++|..+++++.|++.+|+ ++||.||.|.+....
T Consensus       206 ~~l~~~l~~~l-~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~~~  259 (424)
T 2b9w_A          206 QAMFEHLNATL-EHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEKF  259 (424)
T ss_dssp             HHHHHHHHHHS-SSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHHHH
T ss_pred             HHHHHHHHHhh-cceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHHHH
Confidence            34445555555 3478899999999988888889888875 899999999998643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.92  E-value=2.4e-09  Score=102.36  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+|||||++|+++|..|++.  |++|+|||+++......++               +...+.       + .+.   
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~g---------------l~~~~~-------g-~~~---   56 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCG---------------IPYYVS-------G-EVS---   56 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccc---------------cchhhc-------C-CCC---
Confidence            46999999999999999999998  8999999998764322111               110000       0 000   


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~Ad  158 (409)
                      ...     .+.      .+.   .......+.+.+. .+++++++++|+.++.++..+.+.. .+|.  ++.+|.||.|+
T Consensus        57 ~~~-----~~~------~~~---~~~~~~~~~~~~~-~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAt  121 (472)
T 3iwa_A           57 NIE-----SLQ------ATP---YNVVRDPEFFRIN-KDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLAL  121 (472)
T ss_dssp             ---------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred             chH-----Hhc------ccc---chhccCHHHHhhh-cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeC
Confidence            000     000      000   0000011122211 2688999999999998888777765 3354  78999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       122 G~~  124 (472)
T 3iwa_A          122 GSK  124 (472)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            964

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.90  E-value=4.9e-09  Score=99.52  Aligned_cols=109  Identities=18%  Similarity=0.294  Sum_probs=67.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +++||+|||||++|+++|..|++.  |++|+|+|+.+......++               +...+               
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~---------------~p~~~---------------   51 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG---------------IPYVV---------------   51 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC----------------------------------------
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC---------------Ccccc---------------
Confidence            347999999999999999999998  7899999998753221111               10000               


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDG  159 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG  159 (409)
                       .+..    ...        .  .+  ....+.+.+. .+++++++++|+.++.  +...+.+.++. ++.+|.||.|+|
T Consensus        52 -~~~~----~~~--------~--~~--~~~~~~~~~~-~gi~v~~~~~v~~i~~--~~~~v~~~~g~~~~~~d~lviAtG  111 (449)
T 3kd9_A           52 -EGLS----TPD--------K--LM--YYPPEVFIKK-RGIDLHLNAEVIEVDT--GYVRVRENGGEKSYEWDYLVFANG  111 (449)
T ss_dssp             -------------------------------CTHHHH-TTCEEETTCEEEEECS--SEEEEECSSSEEEEECSEEEECCC
T ss_pred             -CCCC----CHH--------H--hh--hcCHHHHHHh-cCcEEEecCEEEEEec--CCCEEEECCceEEEEcCEEEECCC
Confidence             0000    000        0  00  0000122222 2789999999998854  34667777773 799999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       112 ~~  113 (449)
T 3kd9_A          112 AS  113 (449)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.90  E-value=2.2e-09  Score=100.78  Aligned_cols=109  Identities=21%  Similarity=0.408  Sum_probs=71.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCc--eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIR--SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~--V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +++||+|||||++|+++|..|++.|++  |+|+|+.+.+.....     +          +...+            .  
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~------------~--   58 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-----P----------LSKEY------------L--   58 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-----G----------GGTTT------------T--
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-----c----------CCHHH------------H--
Confidence            358999999999999999999999987  999999865321100     0          00000            0  


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                       .+..    ...        .. ...   ..+.+.+  .+++++.+++|+.++....  .|++.++.++.+|.||.|+|.
T Consensus        59 -~~~~----~~~--------~~-~~~---~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~  117 (415)
T 3lxd_A           59 -AREK----TFE--------RI-CIR---PAQFWED--KAVEMKLGAEVVSLDPAAH--TVKLGDGSAIEYGKLIWATGG  117 (415)
T ss_dssp             -TTSS----CSG--------GG-BSS---CHHHHHH--TTEEEEETCCEEEEETTTT--EEEETTSCEEEEEEEEECCCE
T ss_pred             -cCCC----CHH--------Hh-ccC---CHHHHHH--CCcEEEeCCEEEEEECCCC--EEEECCCCEEEeeEEEEccCC
Confidence             0000    000        00 000   0122222  2789999999999976654  567788889999999999995


Q ss_pred             c
Q 015303          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       118 ~  118 (415)
T 3lxd_A          118 D  118 (415)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.89  E-value=1.4e-09  Score=102.91  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      |....||+|||||++|+++|..|++   .|++|+|||+++....       .+....          +. .+.       
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~~~~----------~~-~g~-------   55 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPSNPW----------VG-VGW-------   55 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGGHHH----------HH-HTS-------
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCCccc----------cc-cCc-------
Confidence            5555799999999999999999999   8999999999874211       110000          00 000       


Q ss_pred             eecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303           78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                         ..   ...+.              .   .+.+.+.+  .+++++ ..+|+.++.++.  .|++.+++++.+|.||.|
T Consensus        56 ---~~---~~~~~--------------~---~l~~~~~~--~gv~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviA  107 (437)
T 3sx6_A           56 ---KE---RDDIA--------------F---PIRHYVER--KGIHFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIA  107 (437)
T ss_dssp             ---SC---HHHHE--------------E---ECHHHHHT--TTCEEE-CSCEEEEETTTT--EEEETTSCEEECSEEEEC
T ss_pred             ---cC---HHHHH--------------H---HHHHHHHH--CCCEEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEEC
Confidence               00   00000              0   01222222  267876 468999987665  577788888999999999


Q ss_pred             CCCchHH
Q 015303          158 DGVNSIV  164 (409)
Q Consensus       158 dG~~S~v  164 (409)
                      +|..+..
T Consensus       108 tG~~~~~  114 (437)
T 3sx6_A          108 TGPKLAF  114 (437)
T ss_dssp             CCCEECG
T ss_pred             CCCCcCc
Confidence            9986543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.88  E-value=4.9e-09  Score=99.66  Aligned_cols=33  Identities=24%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            589999999999999999999999999999997

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.88  E-value=6e-09  Score=99.63  Aligned_cols=36  Identities=22%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.86  E-value=1.5e-08  Score=97.01  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+||||||+|+++|..|++.  |.+|+|+|+.+......++.       ..        .+ . +             
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~-------~~--------~~-~-~-------------   86 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGL-------PY--------VI-S-G-------------   86 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGH-------HH--------HH-T-T-------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCc-------ch--------hh-c-C-------------
Confidence            6999999999999999999996  89999999987643222211       00        00 0 0             


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                       ..   .+...          .+.+  ..+.+.+. .+++++++++|+.++.+++.+.+.. .+|+  ++++|.||+|+|
T Consensus        87 -~~---~~~~~----------l~~~--~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG  149 (480)
T 3cgb_A           87 -AI---ASTEK----------LIAR--NVKTFRDK-YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG  149 (480)
T ss_dssp             -SS---SCGGG----------GBSS--CHHHHHHT-TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             -Cc---CCHHH----------hhhc--CHHHHHhh-cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCC
Confidence             00   00000          0000  01223222 3789999999999988777777765 4565  799999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       150 ~~p  152 (480)
T 3cgb_A          150 VRP  152 (480)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.86  E-value=1.2e-08  Score=97.35  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |+.++||+||||||+|+++|..|++.|++|+|+|++
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            777899999999999999999999999999999987

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.85  E-value=1.7e-08  Score=93.46  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||+||+++|..|++.+.+|+|||+.+......      +         .+...+. .....           
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~------~---------~l~~~l~-g~~~~-----------   61 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYR------P---------RLNEIIA-KNKSI-----------   61 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCG------G---------GHHHHHH-SCCCG-----------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCccc------C---------hhhHHHc-CCCCH-----------
Confidence            5799999999999999999988899999999987633111      1         0111010 00000           


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                         ..+.              ..   ..+++.+  .+++++++++|++++.++.  +|++.+|+++.+|.||.|+|..
T Consensus        62 ---~~l~--------------~~---~~~~~~~--~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           62 ---DDIL--------------IK---KNDWYEK--NNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             ---GGTB--------------SS---CHHHHHH--TTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             ---HHcc--------------CC---CHHHHHH--CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCC
Confidence               0000              00   0122222  2789999999999987665  5677888899999999999963

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.85  E-value=1e-08  Score=101.38  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHH---H-cCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLY---R-LGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~---~-~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||+|||++|+.|+   + .|.+|+|+||....
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            489999999999999999999   6 89999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.84  E-value=1.1e-08  Score=97.25  Aligned_cols=110  Identities=14%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|||+++.+....++....           +...+            ..  .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~-----------~~~~~------------~~--~   57 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY-----------FNHTI------------NE--L   57 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh-----------hcCCC------------CC--H
Confidence            5999999999999999999998  89999999987643221111000           00000            00  0


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~ad~vV~AdG~~  161 (409)
                          ..+.             ....    +.+.+  .+++++++++|+.++..+..+.+.. .++.++.+|.||.|+|..
T Consensus        58 ----~~~~-------------~~~~----~~~~~--~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           58 ----HEAR-------------YITE----EELRR--QKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGAS  114 (452)
T ss_dssp             -------C-------------CCCH----HHHHH--TTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCC
T ss_pred             ----HHhh-------------cCCH----HHHHH--CCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcc
Confidence                0000             0011    22222  2788999999999998888777762 244579999999999974


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      .
T Consensus       115 p  115 (452)
T 3oc4_A          115 Q  115 (452)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.83  E-value=5e-09  Score=99.62  Aligned_cols=35  Identities=26%  Similarity=0.561  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|+++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            37999999999999999999999999999999865

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.82  E-value=1.5e-06  Score=86.31  Aligned_cols=36  Identities=25%  Similarity=0.622  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            479999999999999999999999999999998654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.82  E-value=3.6e-08  Score=92.86  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |++.+||+|||+|++|+++|..|++.|++|+|+|+++..
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            556799999999999999999999999999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.82  E-value=6.6e-09  Score=99.18  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            48999999999999999999999999999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.82  E-value=1.7e-08  Score=99.26  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+|||||++|+++|..|++.  |++|+|||+++......++               ++..+.  +.      ..   
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~---------------lp~~~~--g~------~~---   89 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCG---------------LPYYIG--GV------IT---   89 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGG---------------HHHHHT--TS------SC---
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCC---------------Cchhhc--Cc------CC---
Confidence            47999999999999999999998  8999999998764322111               110000  00      00   


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~Ad  158 (409)
                      .  . ...               + ...+ +.+.+.. +++++++++|+.++.++..+.+.. .+++  ++.+|.||.|+
T Consensus        90 ~--~-~~~---------------~-~~~~-~~~~~~~-gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAt  148 (588)
T 3ics_A           90 E--R-QKL---------------L-VQTV-ERMSKRF-NLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSP  148 (588)
T ss_dssp             C--G-GGG---------------B-SSCH-HHHHHHT-TCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred             C--h-HHh---------------h-ccCH-HHHHHhc-CcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECC
Confidence            0  0 000               0 0011 2222232 788999999999998888877765 3455  68999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       149 G~~  151 (588)
T 3ics_A          149 GAK  151 (588)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            964

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.81  E-value=2.5e-08  Score=98.29  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHc------CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL------GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~------g~~V~v~E~~~~~   39 (409)
                      ++||+|||||+|||++|+.|++.      |.+|+|+||....
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            48999999999999999999998      9999999998653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.81  E-value=4.5e-08  Score=93.48  Aligned_cols=55  Identities=11%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhCC----------CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303          108 KLLLETLAKELP----------SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       108 ~~l~~~L~~~~~----------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      ..+.+.|.+.+.          +++|+++++|++|..++++++|++.+|++++||.||.|.+.+.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGV  270 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHH
Confidence            356666766652          4689999999999998888999999998999999999999654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.81  E-value=3.5e-08  Score=92.40  Aligned_cols=106  Identities=16%  Similarity=0.272  Sum_probs=70.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc--eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIR--SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~--V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||++|+++|..|++.|++  |+|+|+.+.......     +          +...+.......          
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-----~----------l~~~~~~g~~~~----------   57 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-----S----------LSKAVLDGSLER----------   57 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-----G----------GGTHHHHTSSSS----------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-----c----------ccHHHhCCCCCH----------
Confidence            4999999999999999999999987  999999876321100     0          111110000000          


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                          ..+ +.             .    .+++.+  .+++++.+++|+.++....  .|++.+++++.+|.||.|+|..
T Consensus        58 ----~~~-~~-------------~----~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           58 ----PPI-LA-------------E----ADWYGE--ARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             ----CCB-SS-------------C----TTHHHH--TTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             ----HHh-cC-------------C----HHHHHH--CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence                000 00             0    011222  2789999999999987654  5677888899999999999965

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.80  E-value=1e-08  Score=98.11  Aligned_cols=36  Identities=22%  Similarity=0.531  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|||+||||||+|+++|+.|++.|++|+|+|+++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            469999999999999999999999999999999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.79  E-value=1e-08  Score=95.18  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+.++||+||||||+|+++|..|++.|  .+|+|+|++.......      +    .     +.     ..        .
T Consensus         1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~------~----~-----l~-----~~--------~   52 (384)
T 2v3a_A            1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSK------P----M-----LS-----TG--------F   52 (384)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECG------G----G-----GG-----GT--------T
T ss_pred             CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCc------c----c-----cc-----HH--------H
Confidence            667799999999999999999999999  4689999875211000      0    0     00     00        0


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                        ..+..     ..           .+....+.+ +.+.. +++++.+++++.++..+..  |++.+ .++.+|.||.|+
T Consensus        53 --~~~~~-----~~-----------~~~~~~~~~-~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~d~lviAt  109 (384)
T 2v3a_A           53 --SKNKD-----AD-----------GLAMAEPGA-MAEQL-NARILTHTRVTGIDPGHQR--IWIGE-EEVRYRDLVLAW  109 (384)
T ss_dssp             --TTTCC-----HH-----------HHEEECHHH-HHHHT-TCEEECSCCCCEEEGGGTE--EEETT-EEEECSEEEECC
T ss_pred             --hCCCC-----HH-----------HhhccCHHH-HHHhC-CcEEEeCCEEEEEECCCCE--EEECC-cEEECCEEEEeC
Confidence              00000     00           000001112 22222 7889999999998876554  44444 469999999999


Q ss_pred             CCch
Q 015303          159 GVNS  162 (409)
Q Consensus       159 G~~S  162 (409)
                      |...
T Consensus       110 G~~p  113 (384)
T 2v3a_A          110 GAEP  113 (384)
T ss_dssp             CEEE
T ss_pred             CCCc
Confidence            9754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.78  E-value=3.1e-08  Score=94.35  Aligned_cols=44  Identities=9%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             CCceEEeCCeEEEEEEeCCe-EEEE-ecCCcEEeccEEEecCCCchH
Q 015303          119 PSGTIRYSSQVVSIEESGHF-KLLH-LADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       119 ~~~~i~~~~~v~~i~~~~~~-v~v~-~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .+++++.+++|+.++.++++ +.|+ +.+|+ +.+|.||.|.|....
T Consensus       224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            37899999999999887655 6788 88887 999999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.77  E-value=4.9e-08  Score=91.31  Aligned_cols=105  Identities=16%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+|||||++|+++|..|++.|.  +|+|+|+.+.......     +          +...+..... .         
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-----~----------~~~~~~~~~~-~---------   61 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-----P----------LSKDFMAHGD-A---------   61 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-----G----------GGTHHHHHCC-G---------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-----C----------CCHHHhCCCc-h---------
Confidence            5899999999999999999999998  4999999865321110     0          0000100000 0         


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                           ..+              .+.      . .+. .+++++.+++|+.++.+..  +|++.+++++.+|.||.|+|..
T Consensus        62 -----~~~--------------~~~------~-~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~  112 (408)
T 2gqw_A           62 -----EKI--------------RLD------C-KRA-PEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAA  112 (408)
T ss_dssp             -----GGS--------------BCC------C-TTS-CSCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             -----hhh--------------hHH------H-HHH-CCCEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCC
Confidence                 000              000      1 111 2689999999999976544  5667788889999999999975


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      .
T Consensus       113 ~  113 (408)
T 2gqw_A          113 P  113 (408)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.77  E-value=5.4e-08  Score=90.33  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=80.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+....                                        
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------------------------  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL----------------------------------------  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc----------------------------------------
Confidence            3589999999999999999999999999999876522200                                        


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                           .  +       .    --...+.+.+.+  .+++++++++|++++.+++.+.+++.+|+++.+|.||.|+|..+.
T Consensus       185 -----~--~-------~----~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          185 -----L--H-------P----AAAKAVQAGLEG--LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             -----S--C-------H----HHHHHHHHHHHT--TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             -----c--C-------H----HHHHHHHHHHHH--cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence                 0  0       0    001233444433  389999999999999888888899999989999999999998765


Q ss_pred             H--HhhhCCC
Q 015303          164 V--AKWLGFK  171 (409)
Q Consensus       164 v--r~~l~~~  171 (409)
                      .  .+.++..
T Consensus       245 ~~l~~~~g~~  254 (384)
T 2v3a_A          245 TELAFAAGLA  254 (384)
T ss_dssp             CHHHHHTTCC
T ss_pred             HHHHHHCCCC
Confidence            3  3334443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.76  E-value=1e-08  Score=95.94  Aligned_cols=106  Identities=21%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .||+|||||++|+++|..|++.|+  +|+|||+.+.......     +          +...+            .....
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~------------l~~~~   54 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-----P----------LSKAY------------LKSGG   54 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-----G----------GGTGG------------GGSCC
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-----c----------CCHHH------------HCCCC
Confidence            589999999999999999999998  8999999874321100     0          00000            00000


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      . . ..+.              ..   ..+.+.+  .+++++. ++|+.++....  .+++.++.++.+|.||.|+|..
T Consensus        55 ~-~-~~~~--------------~~---~~~~~~~--~~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           55 D-P-NSLM--------------FR---PEKFFQD--QAIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             C-T-TSSB--------------SS---CHHHHHH--TTEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEE
T ss_pred             C-H-HHcc--------------CC---CHHHHHh--CCCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCC
Confidence            0 0 0000              00   1122222  2788888 99999987665  5677888899999999999964

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.76  E-value=4.4e-08  Score=92.87  Aligned_cols=110  Identities=12%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.....+++.       ..        .+  .+. .        ..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~-------~~--------~~--~~~-~--------~~   54 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGM-------QL--------YL--EGK-V--------KD   54 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGH-------HH--------HH--TTS-S--------CC
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccc-------hh--------hh--cCc-c--------CC
Confidence            3899999999999999999998  99999999987643222211       00        00  000 0        00


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                         ...+.        .         .+.+.+.+ . +++++.+++++.++.+++.+.+.. .+|+  ++++|.||.|+|
T Consensus        55 ---~~~~~--------~---------~~~~~~~~-~-gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG  112 (447)
T 1nhp_A           55 ---VNSVR--------Y---------MTGEKMES-R-GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPG  112 (447)
T ss_dssp             ---GGGSB--------S---------CCHHHHHH-T-TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ---HHHhh--------c---------CCHHHHHH-C-CCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCC
Confidence               00000        0         01123322 2 789999999999988777777765 3454  489999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       113 ~~p  115 (447)
T 1nhp_A          113 AVP  115 (447)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.76  E-value=3.2e-08  Score=93.97  Aligned_cols=112  Identities=12%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|+|+++.....+++.       .        ..+  .+. ..         
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~-------~--------~~~--~g~-~~---------   53 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGI-------A--------LYL--GKE-IK---------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGH-------H--------HHH--TTC-BG---------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccc-------h--------hhh--cCC-cc---------
Confidence            5899999999999999999998  99999999987543222211       0        000  000 00         


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-C--CcEEeccEEEecCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-D--GTILKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~--g~~~~ad~vV~AdG  159 (409)
                           ..+....         ..   .+.+.+.+  .+++++.+++++.++.+++.+.+... +  +.++++|.||.|+|
T Consensus        54 -----~~~~~~~---------~~---~~~~~~~~--~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG  114 (452)
T 2cdu_A           54 -----NNDPRGL---------FY---SSPEELSN--LGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTG  114 (452)
T ss_dssp             -----GGCGGGG---------BS---CCHHHHHH--TTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             -----cCCHHHh---------hh---cCHHHHHH--cCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccC
Confidence                 0000000         00   01122222  27899999999999877777777542 2  35799999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       115 s~p  117 (452)
T 2cdu_A          115 SKP  117 (452)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.76  E-value=2.4e-08  Score=96.43  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|||+||||||+|+++|..|++.|++|+|+|+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            46899999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.74  E-value=2.2e-08  Score=96.09  Aligned_cols=135  Identities=12%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeee
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVAT   78 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+.++||+|||||+||+++|..|++.  |.+|+|||+.+......+.  ++.   .++.  +......      ....+.
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~--lsk---~l~~--~~~~~~~------~~~~~~   74 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPP--LSK---ELWF--SDDPNVT------KTLRFK   74 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGG--GGT---GGGC--C--CTHH------HHCEEE
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCC--CCH---Hhhc--CCccchh------hccccc
Confidence            45678999999999999999999887  8899999998754321110  000   0000  0000000      000111


Q ss_pred             ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303           79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  158 (409)
                      .+....  ..+.+...      .. ......+.+   ..-.+++++.+++|+.++....  +|++.+|+++.+|.||.|+
T Consensus        75 ~~~~~~--~~~~~~~~------~~-~~~~~~l~~---~~~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviAT  140 (493)
T 1m6i_A           75 QWNGKE--RSIYFQPP------SF-YVSAQDLPH---IENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIAT  140 (493)
T ss_dssp             CTTSCE--EESBSSCG------GG-SBCTTTTTT---STTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECC
T ss_pred             cccccc--ccccccch------Hh-hcchhhhhh---hhcCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECC
Confidence            000000  00111100      00 011111110   0113689999999999987655  5667888889999999999


Q ss_pred             CCch
Q 015303          159 GVNS  162 (409)
Q Consensus       159 G~~S  162 (409)
                      |...
T Consensus       141 Gs~p  144 (493)
T 1m6i_A          141 GGTP  144 (493)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.73  E-value=1.4e-08  Score=95.16  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~   38 (409)
                      .||+|||||++|+++|..|++   .|++|+|+|+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            489999999999999999999   8999999999873

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.73  E-value=4.8e-08  Score=89.96  Aligned_cols=104  Identities=14%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      -||+||||||||+++|..|++.| +|+|+|+++......      + .+   .     ..+ . +              .
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~------~-~l---~-----~~~-~-g--------------~   56 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSK------P-ML---S-----HYI-A-G--------------F   56 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCS------T-TH---H-----HHH-T-T--------------S
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcccc------c-hh---H-----HHH-h-C--------------C
Confidence            59999999999999999999999 999999987532110      0 00   0     000 0 0              0


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                          .+....         ...   ..+++.+.  +++++.+++|+.++.+..  +|+ .+++++++|.||.|+|..
T Consensus        57 ----~~~~~~---------~~~---~~~~~~~~--~v~~~~g~~v~~id~~~~--~V~-~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           57 ----IPRNRL---------FPY---SLDWYRKR--GIEIRLAEEAKLIDRGRK--VVI-TEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             ----SCGGGG---------CSS---CHHHHHHH--TEEEECSCCEEEEETTTT--EEE-ESSCEEECSEEEECCCEE
T ss_pred             ----CCHHHh---------ccC---CHHHHHhC--CcEEEECCEEEEEECCCC--EEE-ECCcEEECCEEEECCCCC
Confidence                000000         000   11222222  789999999999876543  455 677789999999999964

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.73  E-value=7e-08  Score=93.28  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.++||+|||||++|+++|..|++.|++|+|||++..
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4568999999999999999999999999999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.73  E-value=3e-08  Score=95.23  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=45.3

Q ss_pred             eccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeC--------CeEEEEecCCc-----EEeccEEEecCCCc
Q 015303          104 CVRRKLLLETLAKELP--SGTIRYSSQVVSIEESG--------HFKLLHLADGT-----ILKTKVLIGCDGVN  161 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--------~~v~v~~~~g~-----~~~ad~vV~AdG~~  161 (409)
                      ...|.++.++|...+.  +..|+|+++|++++..+        +.|+|++.++.     ++.|+.||.|+|..
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCE
T ss_pred             CCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCC
Confidence            4778899998876553  35699999999998754        24888887652     68999999999953

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.72  E-value=1.4e-08  Score=97.60  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHc---CCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~   37 (409)
                      ++||+||||||+|+++|..|++.   |++|+|||+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999999   99999999986

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=2.5e-08  Score=95.35  Aligned_cols=36  Identities=17%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +.++||+||||||+|+++|..|++.|++|+|+|++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            346899999999999999999999999999999974

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.71  E-value=6.1e-08  Score=91.31  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||+||+++|..|++.+  ++|+|||+++...       +.|....+..  |.        .....        
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v~~--g~--------~~~~~--------   57 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHLAM--GW--------RKFED--------   57 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHHHH--TC--------SCGGG--------
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHHhc--CC--------CCHHH--------
Confidence            37999999999999999999876  7899999886421       1221111000  00        00000        


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                            +..+                 +.+.+ ++ .+++++.+ +|+.|+.++.  +|++++|+++.+|+||.|+|..
T Consensus        58 ------i~~~-----------------~~~~~-~~-~gv~~i~~-~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           58 ------ISVP-----------------LAPLL-PK-FNIEFINE-KAESIDPDAN--TVTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             ------SEEE-----------------STTTG-GG-GTEEEECS-CEEEEETTTT--EEEETTCCEEECSEEEECCCCE
T ss_pred             ------hhhc-----------------HHHHH-HH-CCcEEEEe-EEEEEECCCC--EEEECCCCEEECCEEEEeCCCC
Confidence                  0000                 00111 11 16777765 7999987666  5678899999999999999974

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.69  E-value=1.1e-07  Score=91.54  Aligned_cols=52  Identities=12%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc----EEeccEEEecCCCc
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT----ILKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~----~~~ad~vV~AdG~~  161 (409)
                      .|.+.|.+.++. +|+++++|++|+.+++++.|++.+++    +++||.||.|.+..
T Consensus       242 ~l~~~l~~~l~~-~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          242 KLPTAMYRDIQD-KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             HHHHHHHHHTGG-GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccc-ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence            455555555533 89999999999998888999887765    48999999999965

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.69  E-value=1.5e-07  Score=89.37  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=77.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.                  ...                     
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~~~---------------------  208 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT------------------MDL---------------------  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc------------------cCH---------------------
Confidence            57999999999999999999999999999988653110                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                           .               -...+.+.+.+.  +++++++++|+.++.+++.+.+++.+++++.+|.||.|+|..+..
T Consensus       209 -----~---------------~~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          209 -----E---------------VSRAAERVFKKQ--GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             -----H---------------HHHHHHHHHHHH--TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             -----H---------------HHHHHHHHHHHC--CCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                 0               012233444443  799999999999998888888888888889999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.69  E-value=8.1e-08  Score=93.93  Aligned_cols=110  Identities=16%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .||+||||||||+++|..|++.  |++|+|+|+.+.+....++               +...+.  +.      .   ..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~---------------l~~~~~--~~------~---~~   55 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCG---------------LPYHIS--GE------I---AQ   55 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGG---------------HHHHHT--SS------S---CC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccC---------------chHHhc--CC------c---CC
Confidence            4899999999999999999998  7899999999764322111               110000  00      0   00


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                        . ...              ...  . .+.+.+.. +++++++++|++++.++..+.+.. .++.  ++.+|.||.|+|
T Consensus        56 --~-~~~--------------~~~--~-~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG  114 (565)
T 3ntd_A           56 --R-SAL--------------VLQ--T-PESFKARF-NVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPG  114 (565)
T ss_dssp             --G-GGG--------------BCC--C-HHHHHHHH-CCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             --h-HHh--------------hcc--C-HHHHHHhc-CcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCC
Confidence              0 000              000  0 12222221 788999999999998888777765 2343  789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       115 ~~  116 (565)
T 3ntd_A          115 AA  116 (565)
T ss_dssp             EE
T ss_pred             CC
Confidence            74

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.69  E-value=3.2e-08  Score=94.25  Aligned_cols=34  Identities=24%  Similarity=0.610  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|+++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5899999999999999999999999999999976

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.67  E-value=1.4e-07  Score=89.70  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  ...                     
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  210 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------GDP---------------------  210 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCH---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987653211                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-C--Cc--EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-D--GT--ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~--g~--~~~ad~vV~AdG  159 (409)
                                          --...+.+.|.+  .+++++++++|+.++.+++.+.+++. +  |+  ++.+|.||.|+|
T Consensus       211 --------------------~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G  268 (464)
T 2eq6_A          211 --------------------ETAALLRRALEK--EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG  268 (464)
T ss_dssp             --------------------HHHHHHHHHHHH--TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred             --------------------HHHHHHHHHHHh--cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCC
Confidence                                001233444443  28999999999999988877888876 6  76  799999999999


Q ss_pred             CchHH
Q 015303          160 VNSIV  164 (409)
Q Consensus       160 ~~S~v  164 (409)
                      ..+..
T Consensus       269 ~~p~~  273 (464)
T 2eq6_A          269 RKPRT  273 (464)
T ss_dssp             EEESC
T ss_pred             cccCC
Confidence            87654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.66  E-value=6.1e-08  Score=92.25  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++++||+||||||+|+++|..|++.|++|+|+|++.
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            6677999999999999999999999999999999973

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.63  E-value=6.9e-07  Score=87.79  Aligned_cols=40  Identities=30%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |+.++||+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            3456899999999999999999999999999999987543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.61  E-value=2.8e-07  Score=87.29  Aligned_cols=99  Identities=19%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...     +.+             .                    
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~-------------~--------------------  209 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----FDP-------------M--------------------  209 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SCH-------------H--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-----hhH-------------H--------------------
Confidence            58999999999999999999999999999987542110     000             0                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           -...+.+.|.+.  +++++++++|++++.++++ +.+++.+|+++.+|.||.|+|..+.
T Consensus       210 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          210 ---------------------ISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             ---------------------HHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence                                 012334444443  7999999999999876544 7888889988999999999998765


Q ss_pred             H
Q 015303          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       267 ~  267 (450)
T 1ges_A          267 N  267 (450)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.61  E-value=7.6e-08  Score=92.05  Aligned_cols=35  Identities=31%  Similarity=0.537  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+++|..|++.|++|+|+|++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            46899999999999999999999999999999763

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.60  E-value=5.4e-08  Score=93.31  Aligned_cols=108  Identities=19%  Similarity=0.353  Sum_probs=72.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|..|++. ++|+|+|+++.+...     +..                 ...     ..    .+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~-----~~~-----------------~~~-----~~----~g  155 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGD-----MWL-----------------KGI-----KQ----EG  155 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCS-----GGG-----------------TCS-----EE----TT
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCe-----eec-----------------ccc-----cc----CC
Confidence            47999999999999999999999 999999998753211     000                 000     00    00


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhC-CCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                             ++         .   ...++...+.+.+ .+++++++++|.++..++..+.+.. .+++  .+.+|.||.|+|
T Consensus       156 -------~~---------~---~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtG  216 (493)
T 1y56_A          156 -------FN---------K---DSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATG  216 (493)
T ss_dssp             -------TT---------E---EHHHHHHHHHHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCC
T ss_pred             -------CC---------C---CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCC
Confidence                   00         0   1223444444433 3678899999999988776665544 4443  689999999999


Q ss_pred             Cch
Q 015303          160 VNS  162 (409)
Q Consensus       160 ~~S  162 (409)
                      ...
T Consensus       217 a~~  219 (493)
T 1y56_A          217 AID  219 (493)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.60  E-value=9.9e-08  Score=95.35  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+++|..|+++|++|+|+|+++..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3579999999999999999999999999999998643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.58  E-value=2.2e-07  Score=89.01  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|||+||||||+|+++|..|++.|++|+|+||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4689999999999999999999999999999964

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.58  E-value=6e-08  Score=87.87  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHH--cCCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR--LGIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~--~g~~V~v~E~~~~~~   40 (409)
                      .+||+||||||||+++|+.|++  .|++|+||||++.+.
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            4799999999999999999985  499999999987653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.58  E-value=5.7e-07  Score=85.53  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-..                  +...+                   
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~-------------------  209 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ------------------FDPLL-------------------  209 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc------------------cCHHH-------------------
Confidence            47999999999999999999999999999987542110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG~~S~  163 (409)
                                            ...+.+.|.+.  +++++++++|+.++.+++++.+++.+|+ ++.+|.||.|+|..+.
T Consensus       210 ----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          210 ----------------------SATLAENMHAQ--GIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence                                  01233444433  7999999999999988777889999998 8999999999998754


Q ss_pred             H
Q 015303          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       266 ~  266 (463)
T 2r9z_A          266 T  266 (463)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.58  E-value=8.6e-08  Score=91.91  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|||+||||||+|+++|..|++.|++|+|+||.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            46899999999999999999999999999999843

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.56  E-value=1.5e-07  Score=90.11  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-cCCceEEEeC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLES   35 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      .++||+||||||+|+++|+.|++ .|++|+|+|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999993

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.54  E-value=5.8e-07  Score=84.73  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=68.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+||||||||+++|..|++.|  .+|+|||+++......+.+       .         .+....       .    . 
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l-------~---------~~~~~~-------~----~-   53 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL-------P---------YVIGEV-------V----E-   53 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGH-------H---------HHHTTS-------S----C-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchh-------H---------HHHcCC-------c----c-
Confidence            6999999999999999999988  4799999986532211110       0         000000       0    0 


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---CcEEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---GTILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~~~~ad~vV~AdG~  160 (409)
                      .....+              ......+    .++ .+++++.+++|+.++.....+.+....   +.++.+|.||.|+|.
T Consensus        54 ~~~~~~--------------~~~~~~~----~~~-~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs  114 (437)
T 4eqs_A           54 DRRYAL--------------AYTPEKF----YDR-KQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA  114 (437)
T ss_dssp             CGGGTB--------------CCCHHHH----HHH-HCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE
T ss_pred             chhhhh--------------hcCHHHH----HHh-cCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC
Confidence            000000              0111122    222 178899999999998877776665543   236889999999997


Q ss_pred             ch
Q 015303          161 NS  162 (409)
Q Consensus       161 ~S  162 (409)
                      ..
T Consensus       115 ~p  116 (437)
T 4eqs_A          115 SA  116 (437)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.50  E-value=6.7e-07  Score=84.69  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=71.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+....                 +                      
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~----------------------  189 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY-----------------L----------------------  189 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------C----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc-----------------C----------------------
Confidence            4689999999999999999999999999999886432110                 0                      


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                              +       .    --...+.+.+.+  .+++++++++|++++.++..+.+.+ ++.++.+|.||.|+|....
T Consensus       190 --------~-------~----~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          190 --------D-------K----EFTDVLTEEMEA--NNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             --------C-------H----HHHHHHHHHHHT--TTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             --------C-------H----HHHHHHHHHHHh--CCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence                    0       0    001233344433  3799999999999987632234555 5567999999999997654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.50  E-value=2e-07  Score=88.51  Aligned_cols=34  Identities=24%  Similarity=0.500  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            3589999999999999999999999999999994

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.50  E-value=8e-07  Score=82.91  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||+||+++|..|++.+  .+|+|||+++....       .|.          +..+.......          
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~-------~p~----------~~~v~~g~~~~----------   55 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT-------CYM----------SNEVIGGDREL----------   55 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC-------STT----------HHHHHHTSSCG----------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC-------ccC----------HHHHhcCCCCH----------
Confidence            47999999999999999999876  58999998764211       110          00110000000          


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                          ..+.              ....    .+.+  .+++++.+ +|+.|+.+..  .+++.+|.++.+|.||.|+|...
T Consensus        56 ----~~~~--------------~~~~----~~~~--~gv~~i~~-~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           56 ----ASLR--------------VGYD----GLRA--HGIQVVHD-SALGIDPDKK--LVKTAGGAEFAYDRCVVAPGIDL  108 (401)
T ss_dssp             ----GGGE--------------ECSH----HHHH--TTCEEECS-CEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             ----HHHh--------------hCHH----HHHH--CCCEEEEe-EEEEEEccCc--EEEecccceeecceeeeccCCcc
Confidence                0000              0011    1222  26777654 7888877655  56778888999999999999754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.50  E-value=2.2e-07  Score=83.96  Aligned_cols=34  Identities=35%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +||+|||||+||+.+|+.|++.|++|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5999999999999999999999999999998763

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.50  E-value=1.1e-07  Score=90.11  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +.++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~   46 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   46 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            35689999999999999999999999999999999865

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.49  E-value=7.6e-07  Score=84.54  Aligned_cols=98  Identities=12%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                  +..                     
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  211 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------FEK---------------------  211 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987653100                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CCcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DGTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~~~ad~vV~AdG~~  161 (409)
                                          --...+.+.|.+.  +++++++++|+.++.+++.+.+++.   ++.++.+|.||.|+|..
T Consensus       212 --------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          212 --------------------QMAAIIKKRLKKK--GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             --------------------HHHHHHHHHHHHT--TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEE
T ss_pred             --------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCC
Confidence                                0012333444433  8999999999999988777777765   44579999999999976


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       270 p~  271 (455)
T 1ebd_A          270 PN  271 (455)
T ss_dssp             ES
T ss_pred             cc
Confidence            54

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.47  E-value=4.1e-07  Score=87.18  Aligned_cols=35  Identities=9%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|||||||+||+.+|..|++.+++|+|||+++.
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            45799999999999999999999999999998854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.46  E-value=9.1e-08  Score=92.42  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          108 KLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       108 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      ..+.+.|.+.+.  +++++++++|+.|..++..  +++.+|+++.||.||.+.-..
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHH
Confidence            567777777764  5789999999999887764  567899999999999766544

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.46  E-value=8.3e-07  Score=84.82  Aligned_cols=99  Identities=21%  Similarity=0.274  Sum_probs=73.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... .    .                                   
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~----~-----------------------------------  223 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-M----D-----------------------------------  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-S----C-----------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-c----C-----------------------------------
Confidence            58999999999999999999999999999988653221 0    0                                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEE--eCCeEEEEec-----CCcEEeccEEEec
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE--SGHFKLLHLA-----DGTILKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~-----~g~~~~ad~vV~A  157 (409)
                             .            --...+.+.|.+.  +++++++++|+.+..  +++.+.+++.     ++.++.+|.||.|
T Consensus       224 -------~------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a  282 (478)
T 1v59_A          224 -------G------------EVAKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  282 (478)
T ss_dssp             -------H------------HHHHHHHHHHHHT--TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -------H------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEEC
Confidence                   0            0012333444333  899999999999987  5566777765     3457999999999


Q ss_pred             CCCchHH
Q 015303          158 DGVNSIV  164 (409)
Q Consensus       158 dG~~S~v  164 (409)
                      +|.....
T Consensus       283 ~G~~p~~  289 (478)
T 1v59_A          283 VGRRPYI  289 (478)
T ss_dssp             SCEEECC
T ss_pred             CCCCcCC
Confidence            9976543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.7e-06  Score=82.59  Aligned_cols=99  Identities=21%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-+.                  +..++                   
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~-------------------  228 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK------------------FDECI-------------------  228 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc------------------cCHHH-------------------
Confidence            58999999999999999999999999999987652110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEecCC-cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLADG-TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g-~~~~ad~vV~AdG~~  161 (409)
                                            ...+.+.|.+.  +++++++++|+.++.++++  +.+++.+| +++.+|.||.|.|..
T Consensus       229 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  284 (479)
T 2hqm_A          229 ----------------------QNTITDHYVKE--GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRK  284 (479)
T ss_dssp             ----------------------HHHHHHHHHHH--TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEE
T ss_pred             ----------------------HHHHHHHHHhC--CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCC
Confidence                                  01334445444  8999999999999876544  78888898 789999999999976


Q ss_pred             hHH
Q 015303          162 SIV  164 (409)
Q Consensus       162 S~v  164 (409)
                      ...
T Consensus       285 p~~  287 (479)
T 2hqm_A          285 SHL  287 (479)
T ss_dssp             ECC
T ss_pred             Ccc
Confidence            543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.43  E-value=1.6e-06  Score=80.88  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=78.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+.....                                        
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------------------------------------  182 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVV----------------------------------------  182 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhcc----------------------------------------
Confidence            5799999999999999999999999999998764311000                                        


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                             .       .    --...+.+.+.+  .+++++++++|+.+..+++++ .|++.+|+++.||.||.|.|....
T Consensus       183 -------~-------~----~~~~~l~~~l~~--~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          183 -------T-------P----EISSYFHDRHSG--AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             -------C-------H----HHHHHHHHHHHH--TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             -------C-------H----HHHHHHHHHHHh--CCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence                   0       0    001223333433  389999999999998877665 588999999999999999998543


Q ss_pred             --HHhhhCCC
Q 015303          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~l~~~  171 (409)
                        +.+.++..
T Consensus       243 ~~l~~~~gl~  252 (404)
T 3fg2_P          243 VEIAAAAGLP  252 (404)
T ss_dssp             CHHHHHTTCC
T ss_pred             HHHHHhCCCC
Confidence              33444544

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.43  E-value=1.8e-06  Score=80.93  Aligned_cols=100  Identities=17%  Similarity=0.278  Sum_probs=75.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-...                                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV----------------------------------------  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence            3579999999999999999999999999999886531100                                        


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccEEEecCCCch
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                           +  +       .    --...+.+.+.+  .+++++++++|+.+..+++++ .|++.+|+++.||.||.|.|...
T Consensus       192 -----~--~-------~----~~~~~l~~~l~~--~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          192 -----A--G-------E----ALSEFYQAEHRA--HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             -----S--C-------H----HHHHHHHHHHHH--TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             -----c--C-------H----HHHHHHHHHHHh--CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence                 0  0       0    001122333333  289999999999998876665 68899999999999999999865


Q ss_pred             H
Q 015303          163 I  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       252 ~  252 (415)
T 3lxd_A          252 C  252 (415)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.42  E-value=2.5e-07  Score=86.20  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      |+.++||+|||||++|+++|+.|++. |++|+|+|+++.+
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            33468999999999999999999999 9999999998653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.41  E-value=1e-06  Score=82.38  Aligned_cols=108  Identities=21%  Similarity=0.346  Sum_probs=79.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                     +                  
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~---------------------~------------------  183 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV---------------------L------------------  183 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH---------------------H------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh---------------------c------------------
Confidence            3589999999999999999999999999999876522000                     0                  


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                              +       .    --...+.+.+.+.  +++++++++|+.++.++....|++.+|+++.||.||.|.|..+.
T Consensus       184 --------~-------~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          184 --------G-------R----RIGAWLRGLLTEL--GVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             --------C-------H----HHHHHHHHHHHHH--TCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             --------C-------H----HHHHHHHHHHHHC--CCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence                    0       0    0012233444443  89999999999998766556788999999999999999998654


Q ss_pred             --HHhhhCCC
Q 015303          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~l~~~  171 (409)
                        +.+.++..
T Consensus       243 ~~l~~~~gl~  252 (410)
T 3ef6_A          243 DQLARQAGLA  252 (410)
T ss_dssp             CHHHHHTTCC
T ss_pred             HHHHHhCCCc
Confidence              33444544

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.39  E-value=1e-06  Score=84.82  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|||+||||||+|+.+|..+++.|.+|+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            48999999999999999999999999999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.39  E-value=8.3e-07  Score=91.74  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||||+++|..|++.|++|+|||+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            579999999999999999999999999999998653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.38  E-value=2.4e-06  Score=80.97  Aligned_cols=97  Identities=19%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||..|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  186 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY-----------------------------------------  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc-----------------------------------------
Confidence            479999999999999999999999999999876521100                                         


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                            ++       .    --...+.+.|.+  .+++++++++|++++..++++.+++.++ ++.||.||.|.|...
T Consensus       187 ------~d-------~----~~~~~l~~~l~~--~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          187 ------FD-------K----EMVAEVQKSLEK--QAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             ------CC-------H----HHHHHHHHHHHT--TTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBC
T ss_pred             ------CC-------H----HHHHHHHHHHHH--cCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCC
Confidence                  00       0    001233344433  3899999999999997777778888777 799999999999754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.37  E-value=2.9e-06  Score=81.96  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=75.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+...                  +..++                   
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~-------------------  257 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------KDNET-------------------  257 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------CSHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------ccHHH-------------------
Confidence            58999999999999999999999999999987642210                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe----EEEEecCCc-EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF----KLLHLADGT-ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~----v~v~~~~g~-~~~ad~vV~AdG  159 (409)
                                            ...+.+.|.+.  +++++++++|++++.++++    +.|++.+|+ ++.||.||.|+|
T Consensus       258 ----------------------~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          258 ----------------------RAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ----------------------HHHHHHHHHhC--CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcC
Confidence                                  12334444433  8999999999999876555    778888887 899999999999


Q ss_pred             CchHH
Q 015303          160 VNSIV  164 (409)
Q Consensus       160 ~~S~v  164 (409)
                      ..+..
T Consensus       314 ~~p~~  318 (523)
T 1mo9_A          314 EQPRS  318 (523)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            87653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.36  E-value=2.1e-06  Score=81.88  Aligned_cols=107  Identities=23%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+|+|||||+.|+-+|..|++. |.+|+++++.+.+....                                        
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~----------------------------------------  199 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF----------------------------------------  199 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc----------------------------------------
Confidence            5899999999999999999999 99999999875421100                                        


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                             ++       .    --...+.+.+.+  .+++++++++|+.++.+++.+.+++.+|+++.||.||.|+|....
T Consensus       200 -------~~-------~----~~~~~l~~~l~~--~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          200 -------TS-------K----SLSQMLRHDLEK--NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             -------SC-------H----HHHHHHHHHHHH--TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             -------cC-------H----HHHHHHHHHHHh--cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence                   00       0    001233344433  389999999999998877788888999999999999999998643


Q ss_pred             --HHhhhCCC
Q 015303          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~l~~~  171 (409)
                        +.+.++..
T Consensus       260 ~~l~~~~gl~  269 (472)
T 3iwa_A          260 TQLARDAGLE  269 (472)
T ss_dssp             CHHHHHHTCC
T ss_pred             HHHHHhCCcc
Confidence              33444443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.35  E-value=2.4e-06  Score=81.70  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=75.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..+                    
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~--------------------  227 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------ADRD--------------------  227 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999987542110                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC----CcEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD----GTILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~----g~~~~ad~vV~AdG~  160 (409)
                                           -...+.+.|.+.  +++++++++|+.++.+++.+.+++.+    ++++.+|.||.|.|.
T Consensus       228 ---------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~  284 (482)
T 1ojt_A          228 ---------------------LVKVWQKQNEYR--FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  284 (482)
T ss_dssp             ---------------------HHHHHHHHHGGG--EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             ---------------------HHHHHHHHHHhc--CCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence                                 012334444433  78999999999999887777888876    777999999999998


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       285 ~p~~  288 (482)
T 1ojt_A          285 APNG  288 (482)
T ss_dssp             EECG
T ss_pred             CcCC
Confidence            6543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.33  E-value=3.8e-06  Score=78.47  Aligned_cols=104  Identities=19%  Similarity=0.282  Sum_probs=74.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                 +..                    
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~--------------------  187 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------APA--------------------  187 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------SCH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc-----------------cCH--------------------
Confidence            3589999999999999999999999999999886421100                 000                    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           --...+.+.|.+.  +++++.+++|+.++  ++  .|++.+|+++.||.||.|.|....
T Consensus       188 ---------------------~~~~~l~~~l~~~--GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          188 ---------------------TLADFVARYHAAQ--GVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             ---------------------HHHHHHHHHHHHT--TCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             ---------------------HHHHHHHHHHHHc--CcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCcc
Confidence                                 0012333444333  89999999999998  33  677788889999999999997643


Q ss_pred             --HHhhhCCC
Q 015303          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~l~~~  171 (409)
                        +-+.++..
T Consensus       241 ~~l~~~~gl~  250 (408)
T 2gqw_A          241 DALARAAGLA  250 (408)
T ss_dssp             CHHHHHHTCC
T ss_pred             HHHHHhCCCC
Confidence              33444544

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=3e-06  Score=80.45  Aligned_cols=96  Identities=23%  Similarity=0.322  Sum_probs=70.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                  +..+                    
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~--------------------  213 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------YDSE--------------------  213 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999988653110                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~S  162 (409)
                                          + ...+.+.|.+.  +++++++++|+.++. ++ +.++..+|  .++.+|.||.|+|...
T Consensus       214 --------------------~-~~~l~~~l~~~--gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          214 --------------------L-TAPVAESLKKL--GIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             --------------------H-HHHHHHHHHHH--TCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEE
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCc
Confidence                                0 11233444443  899999999999986 43 66664456  5799999999999765


Q ss_pred             H
Q 015303          163 I  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       269 ~  269 (458)
T 1lvl_A          269 R  269 (458)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.33  E-value=3.9e-06  Score=81.95  Aligned_cols=98  Identities=22%  Similarity=0.379  Sum_probs=74.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+...                  +..++                   
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~-------------------  194 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP------------------VDREM-------------------  194 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT------------------SCHHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh------------------cCHHH-------------------
Confidence            48999999999999999999999999999987542210                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEE-------------------eCCeEEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE-------------------SGHFKLLHLAD  145 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~-------------------~~~~v~v~~~~  145 (409)
                                            ...+.+.|.+.  +++++++++|+.++.                   .++.+.+++.+
T Consensus       195 ----------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (565)
T 3ntd_A          195 ----------------------AGFAHQAIRDQ--GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSN  250 (565)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETT
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcC
Confidence                                  12233444332  789999999999887                   35678888889


Q ss_pred             CcEEeccEEEecCCCchH
Q 015303          146 GTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       146 g~~~~ad~vV~AdG~~S~  163 (409)
                      |+++.||.||.|.|....
T Consensus       251 g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          251 GELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             SCEEEESEEEECSCEEEC
T ss_pred             CCEEEcCEEEECcCCccc
Confidence            989999999999998654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.33  E-value=3.5e-06  Score=80.66  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=75.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||+.|+-+|..|++.   |.+|+|+|+.+.+-+.                  +..+                 
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d~~-----------------  232 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------FDSE-----------------  232 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------SCHH-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc------------------cCHH-----------------
Confidence            5899999999999999999999   9999999988642110                  0000                 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEecCCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              -...+.+.|.+.  +++++++++|+.++.+++ .+.|++.+|+++.+|.||.|.|.
T Consensus       233 ------------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          233 ------------------------LRKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             ------------------------HHHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence                                    012344444433  899999999999987764 47888889988999999999998


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       287 ~p~~  290 (490)
T 1fec_A          287 VPRS  290 (490)
T ss_dssp             EESC
T ss_pred             CcCc
Confidence            6543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.32  E-value=3.2e-06  Score=80.55  Aligned_cols=98  Identities=22%  Similarity=0.315  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                  +..+                    
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~--------------------  216 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT------------------LDED--------------------  216 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc------------------CCHH--------------------
Confidence            58999999999999999999999999999988653211                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHH-HhhCCCceEEeCCeEEEEEEeCCeEEEEec--CC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETL-AKELPSGTIRYSSQVVSIEESGHFKLLHLA--DG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L-~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~~~ad~vV~AdG  159 (409)
                                           -...+.+.| .+.  +++++++++|+.++.+++.+.+++.  +|  .++.+|.||.|.|
T Consensus       217 ---------------------~~~~l~~~l~~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G  273 (468)
T 2qae_A          217 ---------------------VTNALVGALAKNE--KMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVG  273 (468)
T ss_dssp             ---------------------HHHHHHHHHHHHT--CCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSC
T ss_pred             ---------------------HHHHHHHHHhhcC--CcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCC
Confidence                                 012344444 332  8999999999999887766777765  66  5799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ..+.
T Consensus       274 ~~p~  277 (468)
T 2qae_A          274 RRPF  277 (468)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            8754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.32  E-value=4.6e-07  Score=82.88  Aligned_cols=37  Identities=41%  Similarity=0.552  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC-CCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~-~~~   39 (409)
                      ..+||+|||||++||++|+.|++.|++|+|+|++ +.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4689999999999999999999999999999998 553

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.32  E-value=3e-06  Score=80.88  Aligned_cols=99  Identities=20%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+....                 +..+                    
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~--------------------  221 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------IDME--------------------  221 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------CCHH--------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------cCHH--------------------
Confidence            579999999999999999999999999999886532210                 0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEe-----cCCcEEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHL-----ADGTILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~-----~~g~~~~ad~vV~Ad  158 (409)
                                           -...+.+.|.+.  +++++++++|+.++.++++ +.+++     .++.++.+|.||.|+
T Consensus       222 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~  278 (474)
T 1zmd_A          222 ---------------------ISKNFQRILQKQ--GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCI  278 (474)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECS
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECc
Confidence                                 012333444433  8999999999999887765 77764     455689999999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |....
T Consensus       279 G~~p~  283 (474)
T 1zmd_A          279 GRRPF  283 (474)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.31  E-value=6.4e-06  Score=78.05  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=72.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                 +..+                    
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~--------------------  192 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY-----------------FDKE--------------------  192 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT-----------------SCHH--------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh-----------------hhhh--------------------
Confidence            579999999999999999999999999999876422100                 0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           -...+.+.|.+.  +++++++++|++++.+++++.....+|+++.+|.||.|+|....
T Consensus       193 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          193 ---------------------FTDILAKDYEAH--GVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence                                 012233444333  89999999999998766666533347788999999999997654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.30  E-value=3.7e-06  Score=79.15  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=77.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                                        
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~----------------------------------------  188 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----------------------------------------  188 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch----------------------------------------
Confidence            3589999999999999999999999999999865421100                                        


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEE--eCCeE-EEEecCCcEEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE--SGHFK-LLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v-~v~~~~g~~~~ad~vV~AdG~  160 (409)
                             ++       ..   + ...+.+.+.+.  +++++++++|+.++.  +++.+ .|++.+|+++.||.||.|.|.
T Consensus       189 -------~~-------~~---~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          189 -------TA-------PP---V-SAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             -------SC-------HH---H-HHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             -------hh-------HH---H-HHHHHHHHHhC--CeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence                   00       00   0 11233444443  799999999999987  44554 688889989999999999997


Q ss_pred             chH--HHhhhCCC
Q 015303          161 NSI--VAKWLGFK  171 (409)
Q Consensus       161 ~S~--vr~~l~~~  171 (409)
                      ...  +.+.++..
T Consensus       249 ~p~~~l~~~~gl~  261 (431)
T 1q1r_A          249 IPNCELASAAGLQ  261 (431)
T ss_dssp             EECCHHHHHTTCC
T ss_pred             CcCcchhhccCCC
Confidence            543  33444443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.30  E-value=4.4e-06  Score=80.24  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=76.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..     +.             .+                    
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d-------------~~--------------------  224 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----ED-------------AD--------------------  224 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----SS-------------HH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cC-------------HH--------------------
Confidence            57999999999999999999999999999987652110     00             00                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           -...+.+.|.+.  +++++++++|+.++.+++++.+++.+++++.+|.||.|.|..+..
T Consensus       225 ---------------------~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          225 ---------------------AALVLEESFAER--GVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                                 012233444433  899999999999998777788888888889999999999987643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.30  E-value=5.9e-07  Score=82.90  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||||++|+++|+.|++.|++|+|+|+++.+
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            4589999999999999999999999999999998643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.29  E-value=5.2e-06  Score=79.49  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                  +..                     
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~---------------------  215 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------------------QDE---------------------  215 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------------------CCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------CCH---------------------
Confidence            58999999999999999999999999999988652211                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec--CC--cEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA--DG--TILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~~~ad~vV~AdG~  160 (409)
                                          -....+.+.|.+   .++++++++|+.++.+++.+.+++.  +|  .++.+|.||.|.|.
T Consensus       216 --------------------~~~~~l~~~l~~---~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          216 --------------------EMKRYAEKTFNE---EFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             --------------------HHHHHHHHHHHT---TSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC
T ss_pred             --------------------HHHHHHHHHHhh---CcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC
Confidence                                001223344433   2899999999999988888888775  66  57999999999997


Q ss_pred             chH
Q 015303          161 NSI  163 (409)
Q Consensus       161 ~S~  163 (409)
                      ...
T Consensus       273 ~p~  275 (492)
T 3ic9_A          273 KAN  275 (492)
T ss_dssp             EES
T ss_pred             ccC
Confidence            643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.27  E-value=4.7e-07  Score=85.78  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++++||+||||||+|+++|..|++.|++|+|+|++.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            6667999999999999999999999999999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.27  E-value=7e-06  Score=78.81  Aligned_cols=99  Identities=25%  Similarity=0.319  Sum_probs=74.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..++                   
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~-------------------  219 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FDESV-------------------  219 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc------------------cchhh-------------------
Confidence            47999999999999999999999999999987552110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcE-EeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTI-LKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~-~~ad~vV~AdG~~S  162 (409)
                                            ...+.+.|.+.  +++++++++|+.++.+++ .+.+++.+|++ +.+|.||.|.|...
T Consensus       220 ----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p  275 (500)
T 1onf_A          220 ----------------------INVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSP  275 (500)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred             ----------------------HHHHHHHHHhC--CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCc
Confidence                                  11233444443  899999999999987653 47888889987 99999999999765


Q ss_pred             HH
Q 015303          163 IV  164 (409)
Q Consensus       163 ~v  164 (409)
                      ..
T Consensus       276 ~~  277 (500)
T 1onf_A          276 DT  277 (500)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.26  E-value=2.6e-06  Score=81.24  Aligned_cols=98  Identities=26%  Similarity=0.402  Sum_probs=73.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                  +..+                    
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~--------------------  219 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------MDAE--------------------  219 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------ccHH--------------------
Confidence            58999999999999999999999999999988653211                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g--~~~~ad~vV~AdG  159 (409)
                                           -...+.+.|.+.  +++++++++|+.++.+++.+.+++.   +|  .++.+|.||.|.|
T Consensus       220 ---------------------~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  276 (470)
T 1dxl_A          220 ---------------------IRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAG  276 (470)
T ss_dssp             ---------------------HHHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCC
T ss_pred             ---------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCC
Confidence                                 012233444433  7999999999999877666777765   44  5799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ....
T Consensus       277 ~~p~  280 (470)
T 1dxl_A          277 RTPF  280 (470)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            7654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.26  E-value=4.9e-06  Score=79.15  Aligned_cols=98  Identities=22%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..++                   
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~-------------------  214 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN------------------EDADV-------------------  214 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHHH-------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHHH-------------------
Confidence            58999999999999999999999999999988652110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-CC--cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-DG--TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g--~~~~ad~vV~AdG~~  161 (409)
                                            ...+.+.|.+.  +++++++++|+.++.+++.+.+++. +|  .++.+|.||.|.|..
T Consensus       215 ----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          215 ----------------------SKEIEKQFKKL--GVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             ----------------------HHHHHHHHHHH--TCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             ----------------------HHHHHHHHHHc--CCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCC
Confidence                                  11233444443  7999999999999887766777775 56  579999999999976


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       271 p~  272 (464)
T 2a8x_A          271 PN  272 (464)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.25  E-value=1.1e-06  Score=82.84  Aligned_cols=55  Identities=18%  Similarity=0.040  Sum_probs=42.9

Q ss_pred             HHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          109 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       109 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      .+.+.|.+.+  .+++|+++++|++|..+++++.+...+|++++||.||.|.|.++.
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            4445554433  268899999999999888887655567888999999999999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.25  E-value=7.4e-06  Score=78.50  Aligned_cols=98  Identities=22%  Similarity=0.327  Sum_probs=73.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                  +..+                    
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~--------------------  240 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG------------------MDGE--------------------  240 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS------------------SCHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc------------------CCHH--------------------
Confidence            57999999999999999999999999999887542110                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---C--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---G--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g--~~~~ad~vV~AdG  159 (409)
                                           -...+.+.|.+.  +++++.+++|+.++.+++.+.+++.+   |  .++.+|.||.|+|
T Consensus       241 ---------------------~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G  297 (491)
T 3urh_A          241 ---------------------VAKQLQRMLTKQ--GIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG  297 (491)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCC
T ss_pred             ---------------------HHHHHHHHHHhC--CCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeC
Confidence                                 012233444333  78999999999999988887777763   4  4799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ....
T Consensus       298 ~~p~  301 (491)
T 3urh_A          298 RKPS  301 (491)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            8644

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.25  E-value=7.2e-06  Score=78.03  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-+  .    .+             .                    
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~----~~-------------~--------------------  217 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--E----DP-------------A--------------------  217 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--S----CH-------------H--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--C----CH-------------H--------------------
Confidence            5799999999999999999999999999998754211  0    00             0                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                           -...+.+.|.+.  +++++++++|++++.+++.+.+++.+ .++.+|.||.|+|..+..
T Consensus       218 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          218 ---------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGRTPNT  273 (467)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCEEESC
T ss_pred             ---------------------HHHHHHHHHHhC--CCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCCCcCC
Confidence                                 012334444433  89999999999999887777777764 579999999999987653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.23  E-value=4.3e-06  Score=79.54  Aligned_cols=139  Identities=12%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCccc----ceeccccHHHHHHHcCchhHHHhccccccceee
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGF----AFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++.+...+...    ...++|.....+..+.  +..............
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~~~~~  304 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSRE--HAERERLLREYHNTN  304 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSC--HHHHHHHHHHTGGGT
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCC--HHHHHHHHHHhhccC
Confidence            45899999999999999999999  899999999876432110    1112233333333331  111000000000000


Q ss_pred             eecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CCc--EEecc
Q 015303           78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DGT--ILKTK  152 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~--~~~ad  152 (409)
                      +   .     ..+..        ....+.+....+.+. ...+++++.+++|+.++.+++.+.+++.   +|+  ++.+|
T Consensus       305 ~---~-----~~~~~--------~~~~~~~~l~~~~~~-~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D  367 (463)
T 3s5w_A          305 Y---S-----VVDTD--------LIERIYGVFYRQKVS-GIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYD  367 (463)
T ss_dssp             S---S-----CBCHH--------HHHHHHHHHHHHHHH-CCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEES
T ss_pred             C---C-----cCCHH--------HHHHHHHHHHHHHhc-CCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECC
Confidence            0   0     00000        000011111111111 1247899999999999998888888887   665  48999


Q ss_pred             EEEecCCCc
Q 015303          153 VLIGCDGVN  161 (409)
Q Consensus       153 ~vV~AdG~~  161 (409)
                      .||.|+|..
T Consensus       368 ~Vv~AtG~~  376 (463)
T 3s5w_A          368 AVILATGYE  376 (463)
T ss_dssp             EEEECCCEE
T ss_pred             EEEEeeCCC
Confidence            999999953

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.22  E-value=1.4e-05  Score=76.62  Aligned_cols=99  Identities=12%  Similarity=0.117  Sum_probs=75.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||..|+-+|..|++.   |.+|+|+|+.+.+-+.                  +..+                 
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d~~-----------------  236 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG------------------FDET-----------------  236 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT------------------SCHH-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc------------------cCHH-----------------
Confidence            4799999999999999999999   9999999987542110                  0000                 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEecCCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              -...+.+.|.+.  +++++++++|+.++.+++ .+.|++.+|+++.+|.||.|.|.
T Consensus       237 ------------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          237 ------------------------IREEVTKQLTAN--GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             ------------------------HHHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence                                    012334444433  899999999999987654 47888889988999999999998


Q ss_pred             chHH
Q 015303          161 NSIV  164 (409)
Q Consensus       161 ~S~v  164 (409)
                      ....
T Consensus       291 ~p~~  294 (495)
T 2wpf_A          291 IPRT  294 (495)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            6543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.22  E-value=1.2e-06  Score=81.05  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++|+++|..|++.|++|+|+|+++.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            489999999999999999999999999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.21  E-value=8.8e-06  Score=73.17  Aligned_cols=94  Identities=13%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.....                    .                     
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------~---------------------  184 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------K---------------------  184 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------------H---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC--------------------H---------------------
Confidence            47999999999999999999999999999987542100                    0                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecC----C--cEEeccEEEec
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLAD----G--TILKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~----g--~~~~ad~vV~A  157 (409)
                                          .-...+.+.+.+  .+++++++++|+.+..+++++ .|++.+    |  .++.||.||.|
T Consensus       185 --------------------~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a  242 (320)
T 1trb_A          185 --------------------ILIKRLMDKVEN--GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVA  242 (320)
T ss_dssp             --------------------HHHHHHHHHHHT--SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEEC
T ss_pred             --------------------HHHHHHHHhccc--CCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEE
Confidence                                001123333333  379999999999998776443 355543    4  47999999999


Q ss_pred             CCCc
Q 015303          158 DGVN  161 (409)
Q Consensus       158 dG~~  161 (409)
                      .|..
T Consensus       243 ~G~~  246 (320)
T 1trb_A          243 IGHS  246 (320)
T ss_dssp             SCEE
T ss_pred             eCCC
Confidence            9954

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.21  E-value=1.4e-05  Score=76.47  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+|+|||||+.|+-+|..|++    .|.+|+++++.+.+....                 +...                
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~-----------------l~~~----------------  227 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------LPEY----------------  227 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------SCHH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-----------------CCHH----------------
Confidence            479999999999999999987    478899998764311000                 0000                


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              + ...+.+.+.+  .+++++++++|+.++.+++.+.+++.+|+++.||.||.|.|.
T Consensus       228 ------------------------~-~~~~~~~l~~--~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~  280 (493)
T 1m6i_A          228 ------------------------L-SNWTMEKVRR--EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  280 (493)
T ss_dssp             ------------------------H-HHHHHHHHHT--TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ------------------------H-HHHHHHHHHh--cCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence                                    0 1123334433  389999999999998877778889999999999999999997


Q ss_pred             chH
Q 015303          161 NSI  163 (409)
Q Consensus       161 ~S~  163 (409)
                      ...
T Consensus       281 ~pn  283 (493)
T 1m6i_A          281 EPN  283 (493)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.21  E-value=6.7e-06  Score=78.53  Aligned_cols=98  Identities=17%  Similarity=0.289  Sum_probs=69.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------  228 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI------------------YDGD-------------------  228 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc------------------CCHH-------------------
Confidence            468999999999999999999999999999987542110                  0000                   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           + ...+.+.+.+.  +++++++++|+.++.++....+.+. +.++.||.||.|+|....
T Consensus       229 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          229 ---------------------M-AEYIYKEADKH--HIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             ---------------------H-HHHHHHHHHHc--CcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence                                 0 12233444332  8999999999999875433345554 457999999999998653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.20  E-value=6.9e-07  Score=85.62  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|||+||||||+|+++|..|++.|++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4899999999999999999999999999999964

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.20  E-value=1.1e-05  Score=77.32  Aligned_cols=98  Identities=12%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+....                 +..+                   
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~-------------------  237 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------YDRD-------------------  237 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCHH-------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------HHHH-------------------
Confidence            3589999999999999999999999999999876522110                 0000                   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecCCcEEeccEEEecCCCch
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                                            -...+.+.|.+  .+++++++++|+.++. ++.+ .+.+ ++.++.+|.||.|.|...
T Consensus       238 ----------------------~~~~l~~~l~~--~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          238 ----------------------LTDLMAKNMEE--HGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             ----------------------HHHHHHHHHHT--TTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred             ----------------------HHHHHHHHHHh--CCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCc
Confidence                                  01233344433  3899999999999986 3333 3444 677899999999999754


Q ss_pred             H
Q 015303          163 I  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       292 ~  292 (490)
T 2bc0_A          292 N  292 (490)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.19  E-value=1.4e-05  Score=76.24  Aligned_cols=98  Identities=21%  Similarity=0.248  Sum_probs=74.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+...                  +..                     
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  221 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------VDE---------------------  221 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------cCH---------------------
Confidence            57999999999999999999999999999987542110                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                                          --...+.+.|.+.  +++++.+++|+.++.+++.+.+++.++   .++.+|.||.|.|..
T Consensus       222 --------------------~~~~~l~~~l~~~--Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          222 --------------------QVAKEAQKILTKQ--GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             --------------------HHHHHHHHHHHHT--TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred             --------------------HHHHHHHHHHHhC--CCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence                                0012334444433  799999999999998887888887765   578999999999975


Q ss_pred             hH
Q 015303          162 SI  163 (409)
Q Consensus       162 S~  163 (409)
                      ..
T Consensus       280 p~  281 (476)
T 3lad_A          280 PV  281 (476)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.19  E-value=6.6e-06  Score=74.53  Aligned_cols=91  Identities=18%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+....                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            5799999999999999999999999999998754211                                           


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE-EEecC-----CcEEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL-LHLAD-----GTILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~-v~~~~-----g~~~~ad~vV~Ad  158 (409)
                                            ...+.+.+.+ ..+++++.+++++.+..+++.+. |++.+     +.++.+|.||.|.
T Consensus       211 ----------------------~~~~~~~l~~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~  267 (338)
T 3itj_A          211 ----------------------STIMQKRAEK-NEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAI  267 (338)
T ss_dssp             ----------------------CHHHHHHHHH-CTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECS
T ss_pred             ----------------------CHHHHHHHHh-cCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEe
Confidence                                  0122333332 23789999999999988776433 66554     3578999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       268 G~~  270 (338)
T 3itj_A          268 GHT  270 (338)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            953

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.18  E-value=1.6e-05  Score=71.12  Aligned_cols=91  Identities=12%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..       .                                   
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-----------------------------------  181 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC-------A-----------------------------------  181 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS-------C-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC-------C-----------------------------------
Confidence            5899999999999999999999999999998754210       0                                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEec---CCc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLA---DGT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.|.+ ..+++++++++++.+..+++++ .+++.   +|+  ++.+|.||.|.
T Consensus       182 -----------------------~~~~~~l~~-~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  237 (311)
T 2q0l_A          182 -----------------------PITLEHAKN-NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFV  237 (311)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             -----------------------HHHHHHHhh-CCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEe
Confidence                                   012223322 2478999999999998875543 45554   565  68999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       238 G~~  240 (311)
T 2q0l_A          238 GYD  240 (311)
T ss_dssp             CEE
T ss_pred             cCc
Confidence            953

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.16  E-value=1.5e-06  Score=79.98  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +||+|||||++|+++|+.|++.|++|+|+|+++.+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            69999999999999999999999999999998643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=6.5e-06  Score=75.64  Aligned_cols=92  Identities=15%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      +.+             +                    
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~~-------------~--------------------  184 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE-------------E--------------------  184 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH-------------H--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CCH-------------H--------------------
Confidence            5899999999999999999999999999998864211      000             0                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                           -...+.+.|.+.  +++++++++|+.++  .+  .+++.+|+ +.+|.||.|+|....
T Consensus       185 ---------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          185 ---------------------LSNMIKDMLEET--GVKFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             ---------------------HHHHHHHHHHHT--TEEEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEEEC
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCCcC
Confidence                                 012233444433  89999999999987  23  36677887 999999999997654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.13  E-value=1.4e-06  Score=83.56  Aligned_cols=35  Identities=31%  Similarity=0.517  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHH-cCCceEEEeC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLES   35 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      |++++||+||||||+|+++|..|++ .|++|+|||+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            5557999999999999999999999 9999999994

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.12  E-value=2.4e-06  Score=81.60  Aligned_cols=57  Identities=14%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhhCCCceEEeC--CeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303          107 RKLLLETLAKELPSGTIRYS--SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA  165 (409)
Q Consensus       107 r~~l~~~L~~~~~~~~i~~~--~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr  165 (409)
                      -..+.+.|.+.+...+|+++  ++|++|+.++++|+  +.+|++++||.||.|...+...+
T Consensus       215 ~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~  273 (484)
T 4dsg_A          215 TGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDNLLR  273 (484)
T ss_dssp             THHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHHHHH
Confidence            45677788877754589999  56999998877654  57888899999999998665543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.12  E-value=2e-05  Score=74.90  Aligned_cols=96  Identities=22%  Similarity=0.328  Sum_probs=72.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+....                 +.                      
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~d----------------------  213 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL-----------------ED----------------------  213 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS-----------------CC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC-----------------CC----------------------
Confidence            579999999999999999999999999999875421110                 00                      


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC-CeEEEEec--CCc--EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG-HFKLLHLA--DGT--ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v~v~~~--~g~--~~~ad~vV~AdG  159 (409)
                                             ..+.+.+.+... ++++.+++|+.++.++ +.+.+++.  +|+  ++.+|.||.|.|
T Consensus       214 -----------------------~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G  269 (466)
T 3l8k_A          214 -----------------------QDIVNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAG  269 (466)
T ss_dssp             -----------------------HHHHHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCC
T ss_pred             -----------------------HHHHHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcC
Confidence                                   011222222222 8899999999998877 78888887  665  799999999999


Q ss_pred             CchH
Q 015303          160 VNSI  163 (409)
Q Consensus       160 ~~S~  163 (409)
                      ....
T Consensus       270 ~~p~  273 (466)
T 3l8k_A          270 RRPV  273 (466)
T ss_dssp             EEEC
T ss_pred             CCcc
Confidence            7654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.11  E-value=2.1e-06  Score=82.49  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+||||||+|+++|..|++.|++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999984

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.10  E-value=2.3e-06  Score=80.84  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            479999999999999999999999999999998653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.08  E-value=1.8e-05  Score=77.58  Aligned_cols=96  Identities=21%  Similarity=0.384  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+...                  +..++                   
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~-------------------  230 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP------------------IDYEM-------------------  230 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc------------------CCHHH-------------------
Confidence            57999999999999999999999999999987542110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                                            ...+.+.|.+.  +++++.+++|+.++.+++  .|++.+|+++.+|.||.|.|....
T Consensus       231 ----------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          231 ----------------------AAYVHEHMKNH--DVELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             ----------------------HHHHHHHHHHc--CCEEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence                                  12333444332  899999999999987655  466788889999999999998643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.06  E-value=1.9e-05  Score=72.50  Aligned_cols=104  Identities=14%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+......               .                   +..   
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~---------------~-------------------d~~---  209 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD---------------A-------------------DPS---  209 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC--------------------------------------------CT---
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC---------------C-------------------CCC---
Confidence            479999999999999999999999999999875421100               0                   000   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEe-ccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESGHFKLLHLADGTILK-TKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~-ad~vV~AdG~~S  162 (409)
                          ..++       .    -.+..+.+.|.+  .+ ++++.+++|+.++.+++.+.+++.+|+++. +|.||.|+|...
T Consensus       210 ----~~~~-------~----~~~~~l~~~l~~--~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          210 ----VRLS-------P----YTRQRLGNVIKQ--GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             ----TSCC-------H----HHHHHHHHHHHT--TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCG
T ss_pred             ----ccCC-------H----HHHHHHHHHHhh--CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCC
Confidence                0000       0    012334444433  35 899999999999877777888888987665 699999999643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.06  E-value=6.1e-05  Score=72.54  Aligned_cols=98  Identities=16%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||..|+=+|..+++.|.+|+|+++....+.                   ..+++                   
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~-------------------~D~ei-------------------  265 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG-------------------FDQQC-------------------  265 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT-------------------SCHHH-------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc-------------------cchhH-------------------
Confidence            5899999999999999999999999999986422100                   00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  164 (409)
                                            ...+.+.|.+.  +++++.++.++.++..++.+.+.+.++.++.+|.|+.|.|+...+
T Consensus       266 ----------------------~~~l~~~l~~~--gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          266 ----------------------AVKVKLYMEEQ--GVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             ----------------------HHHHHHHHHhh--cceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence                                  12334444443  789999999999999999999999999999999999999976443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.05  E-value=3.7e-05  Score=73.33  Aligned_cols=97  Identities=19%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+-..                  +..++                   
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~-------------------  230 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------FDSMI-------------------  230 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc------------------cCHHH-------------------
Confidence            58999999999999999999999999999987542110                  00000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEecC---C----cEEeccEEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLAD---G----TILKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~---g----~~~~ad~vV  155 (409)
                                            ...+.+.|.+.  +++++.+++|+.++..+++  +.+++.+   +    .++.+|.||
T Consensus       231 ----------------------~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi  286 (478)
T 3dk9_A          231 ----------------------STNCTEELENA--GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL  286 (478)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEE
Confidence                                  12334444433  7999999999999876554  6777765   2    578999999


Q ss_pred             ecCCCch
Q 015303          156 GCDGVNS  162 (409)
Q Consensus       156 ~AdG~~S  162 (409)
                      .|.|...
T Consensus       287 ~a~G~~p  293 (478)
T 3dk9_A          287 WAIGRVP  293 (478)
T ss_dssp             ECSCEEE
T ss_pred             Eeecccc
Confidence            9999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.03  E-value=3.9e-05  Score=69.15  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..       .                                   
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-----------------------------------  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------N-----------------------------------  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------C-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------c-----------------------------------
Confidence            4799999999999999999999999999998754210       0                                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CCc--EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DGT--ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~--~~~ad~vV~AdG  159 (409)
                                             ..+.+.+.+ ..+++++++++++.+..++....|++.   +|+  ++.+|.||.|.|
T Consensus       191 -----------------------~~~~~~l~~-~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  246 (325)
T 2q7v_A          191 -----------------------KVAQARAFA-NPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIG  246 (325)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             -----------------------hHHHHHHHh-cCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccC
Confidence                                   011222222 237899999999999875443345554   564  789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       247 ~~  248 (325)
T 2q7v_A          247 HV  248 (325)
T ss_dssp             EE
T ss_pred             CC
Confidence            53

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.02  E-value=4.9e-05  Score=68.00  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  185 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA------------------------------------------  185 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC------------------------------------------
Confidence            47999999999999999999999999999987543100                                          


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~vV~AdG  159 (409)
                                             ..+.+.+.+ ..+++++++++++.+..++++   +++...+|+  ++.+|.||.|.|
T Consensus       186 -----------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G  241 (315)
T 3r9u_A          186 -----------------------PSTVEKVKK-NEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVG  241 (315)
T ss_dssp             -----------------------HHHHHHHHH-CTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSC
T ss_pred             -----------------------HHHHHHHHh-cCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEc
Confidence                                   011122222 238999999999999887754   333333775  789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       242 ~~  243 (315)
T 3r9u_A          242 LN  243 (315)
T ss_dssp             EE
T ss_pred             CC
Confidence            53

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.00  E-value=4.1e-05  Score=73.10  Aligned_cols=96  Identities=19%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++......                   +..+                    
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~--------------------  228 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG-------------------FDQQ--------------------  228 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT-------------------SCHH--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc-------------------cCHH--------------------
Confidence            4799999999999999999999999999997421100                   0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCc-----EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGT-----ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~-----~~~ad~vV~Ad  158 (409)
                                           -...+.+.|.+.  +++++.+++|+.++..++ .+.+++.++.     ++.+|.||.|.
T Consensus       229 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~  285 (483)
T 3dgh_A          229 ---------------------MAELVAASMEER--GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAI  285 (483)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECS
T ss_pred             ---------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECc
Confidence                                 012233444433  789999999999987654 4677776654     78999999999


Q ss_pred             CCch
Q 015303          159 GVNS  162 (409)
Q Consensus       159 G~~S  162 (409)
                      |...
T Consensus       286 G~~p  289 (483)
T 3dgh_A          286 GRKG  289 (483)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            9754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.99  E-value=1.7e-05  Score=72.69  Aligned_cols=94  Identities=22%  Similarity=0.281  Sum_probs=67.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...       +             .+                   
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------~-------------~~-------------------  204 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH-------G-------------KT-------------------  204 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC-------S-------------HH-------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC-------H-------------HH-------------------
Confidence            47999999999999999999999999999987542110       0             00                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEe--cCC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHL--ADG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~--~~g--~~~~ad~vV~AdG  159 (409)
                                            ...+.+.+.+  .+++++++++|+.+..+++.+ .|++  .+|  .++.+|.||.|+|
T Consensus       205 ----------------------~~~l~~~~~~--~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G  260 (360)
T 3ab1_A          205 ----------------------AHEVERARAN--GTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIG  260 (360)
T ss_dssp             ----------------------HHSSHHHHHH--TSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCC
T ss_pred             ----------------------HHHHHHHhhc--CceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCC
Confidence                                  0012222222  278999999999998876643 3444  366  4789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       261 ~~  262 (360)
T 3ab1_A          261 FK  262 (360)
T ss_dssp             BC
T ss_pred             CC
Confidence            54

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.99  E-value=3.4e-05  Score=73.00  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS-----------------------------------------  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------------------------------
Confidence            489999999999999999999999999999876321110                                         


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                            ++       .    --...+.+.|.+  . ++++.+++++.++.++ .+...+.++.++.+|.||.|.|...
T Consensus       188 ------~~-------~----~~~~~l~~~l~~--~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p  244 (449)
T 3kd9_A          188 ------FD-------K----EVTDILEEKLKK--H-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKP  244 (449)
T ss_dssp             ------SC-------H----HHHHHHHHHHTT--T-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEE
T ss_pred             ------cC-------H----HHHHHHHHHHHh--C-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCcc
Confidence                  00       0    001223333332  2 8999999999997655 4444455777899999999999863

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.98  E-value=2.9e-05  Score=70.29  Aligned_cols=94  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.....       +             ..                   
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~-------~-------------~~-------------------  193 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH-------E-------------AS-------------------  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC-------H-------------HH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc-------H-------------HH-------------------
Confidence            47999999999999999999999999999987542110       0             00                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g--~~~~ad~vV~AdG  159 (409)
                                            ...+.+.+.+  .+++++++++++.++.++....|++.   +|  .++.+|.||.|.|
T Consensus       194 ----------------------~~~l~~~l~~--~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2zbw_A          194 ----------------------VKELMKAHEE--GRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAG  249 (335)
T ss_dssp             ----------------------HHHHHHHHHT--TSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ----------------------HHHHHhcccc--CCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeec
Confidence                                  0123333433  37899999999999875443345554   66  4789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       250 ~~  251 (335)
T 2zbw_A          250 YI  251 (335)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.98  E-value=4.3e-05  Score=68.26  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=66.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                     +                     
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~---------------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D---------------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---------------------C---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc---------------------c---------------------
Confidence            4799999999999999999999999999998754210                     0                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecC---Cc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLAD---GT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.|.+ ..+++++.+++++.+..+++.+ .+++.+   |+  ++.+|.||.|.
T Consensus       183 -----------------------~~~~~~l~~-~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  238 (310)
T 1fl2_A          183 -----------------------QVLQDKLRS-LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQI  238 (310)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             -----------------------HHHHHHHhh-CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEee
Confidence                                   012233332 2478999999999998765543 355543   43  68999999999


Q ss_pred             CC
Q 015303          159 GV  160 (409)
Q Consensus       159 G~  160 (409)
                      |.
T Consensus       239 G~  240 (310)
T 1fl2_A          239 GL  240 (310)
T ss_dssp             CE
T ss_pred             CC
Confidence            95

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.97  E-value=5.8e-05  Score=67.73  Aligned_cols=91  Identities=16%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  192 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ------------------------------------------  192 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcC------------------------------------------
Confidence            57999999999999999999999999999987542210                                          


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---Cc--EEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---GT--ILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~--~~~ad~vV~AdG  159 (409)
                                             ..+.+.+.+ ..+++++.+++++.+..++....+++.+   |+  ++.+|.||.|.|
T Consensus       193 -----------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  248 (323)
T 3f8d_A          193 -----------------------PIYVETVKK-KPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIG  248 (323)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             -----------------------HHHHHHHHh-CCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEEC
Confidence                                   011122322 2378999999999998776555566665   65  789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       249 ~~  250 (323)
T 3f8d_A          249 FD  250 (323)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.96  E-value=5.7e-05  Score=72.95  Aligned_cols=53  Identities=13%  Similarity=0.056  Sum_probs=39.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHH
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALD   57 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~   57 (409)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.+..-.......+++...+.|+
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIK  231 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHH
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHH
Confidence            58999999999999999999999999999998763111112334444444444

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.96  E-value=4.4e-05  Score=69.02  Aligned_cols=91  Identities=20%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                        .  
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~----------------------------------------~--  197 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA----------------------------------------S--  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS----------------------------------------C--
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc----------------------------------------c--
Confidence            5899999999999999999999999999998754210                                        0  


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC--eE-EEEec---CC--cEEeccEEEe
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH--FK-LLHLA---DG--TILKTKVLIG  156 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~--~v-~v~~~---~g--~~~~ad~vV~  156 (409)
                                             ..+.+.+++ ..+++++++++++.+..+++  .+ .+.+.   +|  .++.+|.||.
T Consensus       198 -----------------------~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~  253 (333)
T 1vdc_A          198 -----------------------KIMQQRALS-NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFF  253 (333)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -----------------------HHHHHHHHh-CCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEE
Confidence                                   011122222 23789999999999987664  32 24443   34  4789999999


Q ss_pred             cCCCc
Q 015303          157 CDGVN  161 (409)
Q Consensus       157 AdG~~  161 (409)
                      |.|..
T Consensus       254 a~G~~  258 (333)
T 1vdc_A          254 AIGHE  258 (333)
T ss_dssp             CSCEE
T ss_pred             EeCCc
Confidence            99953

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.95  E-value=5.8e-05  Score=67.78  Aligned_cols=90  Identities=14%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~------------------------------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE------------------------------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC------------------------------------------
Confidence            47999999999999999999999999999986532100                                          


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEec---CCc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLA---DGT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.+.+  .+++++++++++.+..+++. ..+.+.   +|+  ++.+|.||.|+
T Consensus       194 -----------------------~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  248 (319)
T 3cty_A          194 -----------------------NAYVQEIKK--RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYV  248 (319)
T ss_dssp             -----------------------HHHHHHHHH--TTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECC
T ss_pred             -----------------------HHHHHHHhc--CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEee
Confidence                                   012223332  37899999999999876552 234443   564  68999999999


Q ss_pred             CCc
Q 015303          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       249 G~~  251 (319)
T 3cty_A          249 GLI  251 (319)
T ss_dssp             CEE
T ss_pred             CCc
Confidence            953

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.95  E-value=6.4e-05  Score=71.89  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++......                   +..+                    
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~--------------------  226 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG-------------------FDQQ--------------------  226 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc-------------------CCHH--------------------
Confidence            4799999999999999999999999999997532100                   0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC-CeEEEEecC---Cc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG-HFKLLHLAD---GT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                           -...+.+.|.+.  +++++.+++++.++..+ +.+.+++.+   |+  ++.+|.||.|.
T Consensus       227 ---------------------~~~~l~~~l~~~--gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~  283 (488)
T 3dgz_A          227 ---------------------MSSLVTEHMESH--GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAI  283 (488)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECS
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcc
Confidence                                 012233444433  79999999999998754 446666654   44  47899999999


Q ss_pred             CCchH
Q 015303          159 GVNSI  163 (409)
Q Consensus       159 G~~S~  163 (409)
                      |....
T Consensus       284 G~~p~  288 (488)
T 3dgz_A          284 GRVPE  288 (488)
T ss_dssp             CEEES
T ss_pred             cCCcc
Confidence            97543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.95  E-value=5.2e-06  Score=78.54  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-c------CCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-L------GIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~------g~~V~v~E~~~~   38 (409)
                      .++||+||||||+|+.+|..|++ .      |++|+|||+.+.
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            45899999999999999999999 7      999999999865

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.90  E-value=7.6e-06  Score=80.45  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||||+++|..|++.|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999984

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.89  E-value=8.5e-06  Score=79.12  Aligned_cols=36  Identities=31%  Similarity=0.464  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..||++|||+|++|+++|..|++.|++|+|+|++..
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            358999999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.88  E-value=9.5e-06  Score=81.46  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+||+||||||||+++|..|+++|++|+|||+.+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~  423 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK  423 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47999999999999999999999999999999865

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.86  E-value=8.4e-06  Score=78.85  Aligned_cols=36  Identities=36%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-cCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~~   38 (409)
                      ..||+||||||++|+.+|..|++ .|++|+|+|++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            36999999999999999999998 6899999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.86  E-value=6.3e-05  Score=72.74  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            4799999999999999999999999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.86  E-value=0.00013  Score=68.63  Aligned_cols=93  Identities=18%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.....                  ...                     
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~------------------~d~---------------------  188 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL------------------MDA---------------------  188 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT------------------SCG---------------------
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc------------------ccc---------------------
Confidence            47999999999999999999999999999987542110                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                                          -....+.+.|.+.  +++++.+++|+.++.  +  .+++.+|+++.+|.|+.|.|...
T Consensus       189 --------------------~~~~~~~~~l~~~--gV~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          189 --------------------DMNQPILDELDKR--EIPYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             --------------------GGGHHHHHHHHHT--TCCEEESCCEEEEET--T--EEEETTSCEEECSEEEECCCEEE
T ss_pred             --------------------hhHHHHHHHhhcc--ceEEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEeceec
Confidence                                0012334444443  789999999988753  3  47788999999999999999653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.82  E-value=1.4e-05  Score=79.53  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||||+.+|..|+++|++|+|+|+.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            479999999999999999999999999999998653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.82  E-value=6.8e-05  Score=67.87  Aligned_cols=90  Identities=18%  Similarity=0.242  Sum_probs=64.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....                                        . +
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~----------------------------------------~-~  194 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA----------------------------------------S-K  194 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS----------------------------------------C-T
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc----------------------------------------c-H
Confidence            5899999999999999999999999999998754200                                        0 0


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEe-cCC--cEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHL-ADG--TILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~-~~g--~~~~ad~vV~AdG  159 (409)
                                              .+.+.+.+ ..+++++++++++.++.+++.  +.+.. .+|  .++.+|.||.|.|
T Consensus       195 ------------------------~~~~~~~~-~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2a87_A          195 ------------------------IMLDRARN-NDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIG  249 (335)
T ss_dssp             ------------------------THHHHHHH-CTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSC
T ss_pred             ------------------------HHHHHHhc-cCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccC
Confidence                                    01112222 237899999999999876532  44432 144  4789999999999


Q ss_pred             C
Q 015303          160 V  160 (409)
Q Consensus       160 ~  160 (409)
                      .
T Consensus       250 ~  250 (335)
T 2a87_A          250 H  250 (335)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.81  E-value=7.1e-06  Score=79.30  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .||+||||||+||+.+|..|++ |.+|+|+|++...
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            5899999999999999999999 9999999998653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.78  E-value=2e-05  Score=79.69  Aligned_cols=36  Identities=25%  Similarity=0.622  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            469999999999999999999999999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.76  E-value=7.2e-05  Score=67.42  Aligned_cols=90  Identities=17%  Similarity=0.198  Sum_probs=66.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                    +..                   
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--------------------~~~-------------------  195 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--------------------EHS-------------------  195 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--------------------HHH-------------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--------------------HHH-------------------
Confidence            47999999999999999999999999999987542110                    000                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC-----CcEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD-----GTILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~-----g~~~~ad~vV~AdG  159 (409)
                                                .+.|.+  .+++++.+++++.+..+++...+++.+     +.++.+|.||.|.|
T Consensus       196 --------------------------~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  247 (332)
T 3lzw_A          196 --------------------------VENLHA--SKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYG  247 (332)
T ss_dssp             --------------------------HHHHHH--SSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCC
T ss_pred             --------------------------HHHHhc--CCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeec
Confidence                                      011222  378999999999998776655566554     34789999999999


Q ss_pred             Cc
Q 015303          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       248 ~~  249 (332)
T 3lzw_A          248 FV  249 (332)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.73  E-value=0.0003  Score=67.65  Aligned_cols=96  Identities=14%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++......                   +..+                    
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d~~--------------------  251 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FDQD--------------------  251 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCHH--------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc-------------------CCHH--------------------
Confidence            4699999999999999999999999999997421000                   0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC----CeEEEE--ecCCc---EEeccEEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG----HFKLLH--LADGT---ILKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~----~~v~v~--~~~g~---~~~ad~vV  155 (409)
                                           -...+.+.|.+.  +++++.+++++.+...+    +.+.++  ..++.   ++.+|.||
T Consensus       252 ---------------------~~~~~~~~l~~~--GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi  308 (519)
T 3qfa_A          252 ---------------------MANKIGEHMEEH--GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM  308 (519)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEE
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEE
Confidence                                 012233444333  78999999888886543    344444  34552   56899999


Q ss_pred             ecCCCch
Q 015303          156 GCDGVNS  162 (409)
Q Consensus       156 ~AdG~~S  162 (409)
                      .|.|...
T Consensus       309 ~a~G~~p  315 (519)
T 3qfa_A          309 LAIGRDA  315 (519)
T ss_dssp             ECSCEEE
T ss_pred             EecCCcc
Confidence            9999754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.73  E-value=2.4e-05  Score=74.11  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            3579999999999999999999998  999999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.72  E-value=2.6e-05  Score=81.22  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+||+||||||||+++|..|++.|+ +|+|||+.+.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY  222 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            4699999999999999999999999 7999999764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.71  E-value=0.00011  Score=65.15  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.| +|+++++.+.        .             +                       
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~--------~-------------~-----------------------  176 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV--------E-------------P-----------------------  176 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC--------C-------------C-----------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC--------C-------------C-----------------------
Confidence            57999999999999999999999 9999876532        0             0                       


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                                            ...+.+.|.+.  +++++. ++|+.+..++   .+++.+|+++.+|.||.|.|..
T Consensus       177 ----------------------~~~~~~~l~~~--gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          177 ----------------------DADQHALLAAR--GVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             ----------------------CHHHHHHHHHT--TCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEE
T ss_pred             ----------------------CHHHHHHHHHC--CcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcc
Confidence                                  01122333332  788884 8888886533   6788899999999999999953

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.68  E-value=3.1e-05  Score=74.30  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|++|||+|++|+.+|..|++.|.+|+|+|++.
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            346899999999999999999999999999999875

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.67  E-value=2.4e-05  Score=75.99  Aligned_cols=36  Identities=33%  Similarity=0.373  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      ..||+||||||.|||.+|..|++.| .+|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4599999999999999999999987 79999999876

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.63  E-value=3.8e-05  Score=73.68  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|++|||+|++|+++|..|++.|++|+|+|++.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            46899999999999999999999999999999876

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.61  E-value=6.4e-05  Score=73.17  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT   42 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~   42 (409)
                      .++|||+|||+|+.|+.+|..|++.|.+|+++||++.....
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~   46 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN   46 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCc
Confidence            34699999999999999999999999999999999875443

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.59  E-value=0.00014  Score=68.61  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~   38 (409)
                      .+|+|||||.+|+-+|..|++.|.+ |+|+++.+.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            4799999999999999999999999 999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.59  E-value=0.00025  Score=67.24  Aligned_cols=34  Identities=12%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||||.+|+-+|..|++.|.+|+++++++.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            4799999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.58  E-value=3.6e-05  Score=74.71  Aligned_cols=35  Identities=37%  Similarity=0.561  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~   37 (409)
                      ..||+||||||.|||.+|..|++. +.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            359999999999999999999974 89999999987

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.57  E-value=6.5e-05  Score=72.72  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.55  E-value=5.7e-05  Score=73.77  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-cCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~~~   39 (409)
                      ..+|++|||+|++|+++|..|++ .|.+|+|+|++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            35899999999999999999999 89999999998643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.55  E-value=3.6e-05  Score=75.92  Aligned_cols=36  Identities=33%  Similarity=0.467  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--------CceEEEeCCC-Cc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG--------IRSMVLESSE-SL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g--------~~V~v~E~~~-~~   39 (409)
                      ..+|+|||||++||++|+.|++.|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            368999999999999999999999        9999999987 54

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.54  E-value=3e-05  Score=75.06  Aligned_cols=35  Identities=37%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHH-cCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~~   38 (409)
                      .||++|||||.||+.+|..|++ .|.+|+|+|+...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCc
Confidence            4899999999999999999998 7999999999764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.54  E-value=0.00057  Score=65.76  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=66.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+....                     +                     
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------------------~---------------------  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D---------------------  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------------------C---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------------------C---------------------
Confidence            4799999999999999999999999999997654210                     0                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeE-EEEecC---Cc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFK-LLHLAD---GT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v-~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.|. ..++++++.+++++.+..+++++ .+++.+   |+  ++.+|.||.|.
T Consensus       394 -----------------------~~l~~~l~-~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  449 (521)
T 1hyu_A          394 -----------------------QVLQDKVR-SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQI  449 (521)
T ss_dssp             -----------------------HHHHHHHT-TCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             -----------------------HHHHHHHh-cCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECc
Confidence                                   01222332 22478999999999998765544 355543   43  68999999999


Q ss_pred             CC
Q 015303          159 GV  160 (409)
Q Consensus       159 G~  160 (409)
                      |.
T Consensus       450 G~  451 (521)
T 1hyu_A          450 GL  451 (521)
T ss_dssp             CE
T ss_pred             CC
Confidence            94

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.53  E-value=0.001  Score=65.21  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999976

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.49  E-value=6.3e-05  Score=72.85  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      +.+|++|||+|++|+++|..|++. |.+|+|+|++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            358999999999999999999998 8999999998543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.48  E-value=0.00048  Score=65.85  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc----EEeccEEEecCCCc
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT----ILKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~----~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+.  +++++.+++|+.++.++........+|+    ++.||+||-|.|..
T Consensus       277 ~~~~~L~~~--GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          277 YAQSHLENT--SIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHT--TCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHhc--ceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            344455443  8999999999998644333444455664    68999999999963

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.09  E-value=0.00085  Score=67.30  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVG--AGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG--~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799999  99999999999999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.08  E-value=0.0016  Score=67.43  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+..                      .                    
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~----------------------~--------------------  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA----------------------A--------------------  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH----------------------H--------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch----------------------h--------------------
Confidence            4799999999999999999999999999998754210                      0                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEe-CCe-EEEEecC-------C--cEEeccE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEES-GHF-KLLHLAD-------G--TILKTKV  153 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~-------g--~~~~ad~  153 (409)
                                                .+.|.+  .+++++.++.++.+..+ +++ ..|++.+       |  .++.||.
T Consensus       323 --------------------------~~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~  374 (965)
T 2gag_A          323 --------------------------AAQAVA--DGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADV  374 (965)
T ss_dssp             --------------------------HHHHHH--TTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSE
T ss_pred             --------------------------HHHHHh--CCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCE
Confidence                                      012222  27899999999999873 332 2344433       4  5799999


Q ss_pred             EEecCCCch
Q 015303          154 LIGCDGVNS  162 (409)
Q Consensus       154 vV~AdG~~S  162 (409)
                      ||.|.|...
T Consensus       375 Vv~a~G~~P  383 (965)
T 2gag_A          375 LAVAGGFNP  383 (965)
T ss_dssp             EEEECCEEE
T ss_pred             EEECCCcCc
Confidence            999999753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.01  E-value=0.0007  Score=62.43  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=33.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            479999999999999999999999999999987653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.92  E-value=0.0011  Score=52.45  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35899999999999999999999999999998754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.91  E-value=0.0037  Score=62.11  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCCCc
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+.  +++++.+++|+.++  ++++.++ .+|  .++.+|.||.|.|..
T Consensus       578 ~~~~~l~~~--GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~  627 (671)
T 1ps9_A          578 IHRTTLLSR--GVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQE  627 (671)
T ss_dssp             HHHHHHHHT--TCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEE
T ss_pred             HHHHHHHhc--CCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCcc
Confidence            344555443  89999999999986  4455555 566  479999999999954

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.90  E-value=0.0013  Score=51.86  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4589999999999999999999999999999873

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.86  E-value=0.00092  Score=60.65  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|++|+-+|..|++.| +|+++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            58999999999999999999998 799999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.85  E-value=0.0011  Score=51.42  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.83  E-value=0.0061  Score=57.52  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHH--------------------HcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLY--------------------RLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~--------------------~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|..|+-+|..|+                    +.|. +|+|++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            58999999999999999999                    5787 6999998864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.82  E-value=0.0013  Score=50.74  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.79  E-value=0.0054  Score=59.25  Aligned_cols=35  Identities=14%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            57999999999999999999999999999987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.79  E-value=0.0015  Score=50.64  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999999754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.73  E-value=0.0016  Score=57.15  Aligned_cols=38  Identities=13%  Similarity=0.340  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ||...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            66556899999999999999999999999999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.71  E-value=0.0096  Score=62.05  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            89999999999999999999996 899999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.65  E-value=0.0044  Score=58.38  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--------------------CC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--------------------GI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--------------------g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|.+|+-+|..|++.                    |. +|+|++++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            4799999999999999999974                    64 8999998864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.63  E-value=0.0021  Score=47.89  Aligned_cols=33  Identities=24%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      .+|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            58999999999999999999999 8999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.54  E-value=0.004  Score=58.64  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      .+|+|||||.+|+-+|..+.+.|. +|+++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            479999999999999999999998 59999988653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.42  E-value=0.0027  Score=57.80  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ||+..+|+|||+|-.|...|..|++.|++|+++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            6666799999999999999999999999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.40  E-value=0.0033  Score=56.19  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |.+..+|+|||+|-.|..+|..|++.|+ +|+++|+++.
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            6666799999999999999999999998 9999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.32  E-value=0.0031  Score=56.17  Aligned_cols=35  Identities=11%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            48999999999999999999999999999988653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.26  E-value=0.017  Score=55.12  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      .+|+|||+|-+|.-++..|++.  +.+|+++=|.+.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            4799999999999999999875  678999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.0052  Score=49.96  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~   38 (409)
                      ..|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            4799999999999999999999 999999998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.23  E-value=0.0052  Score=47.51  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.21  E-value=0.0092  Score=55.36  Aligned_cols=38  Identities=11%  Similarity=0.036  Sum_probs=32.2

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      +++++++++|+.++.+  .  +++.+|+++.+|.||.|.|..
T Consensus       232 gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          232 GIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             TCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCEE
T ss_pred             CCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCCC
Confidence            7899999999998643  2  677889999999999999953

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.15  E-value=0.0037  Score=52.50  Aligned_cols=33  Identities=6%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.14  E-value=0.0061  Score=54.44  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |+...+|+|||+|-.|..+|..|+..|+ +|+++|.+..
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            6656799999999999999999999998 9999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.10  E-value=0.0055  Score=54.82  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999999999999863

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.09  E-value=0.0042  Score=54.92  Aligned_cols=36  Identities=11%  Similarity=0.040  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|.|||.|-.|...|..|++.|++|+++|+++.
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            356899999999999999999999999999998865

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.08  E-value=0.0046  Score=54.81  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|...|..++..|++|+|+|..+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.96  E-value=0.0071  Score=54.46  Aligned_cols=33  Identities=33%  Similarity=0.307  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..+|+|||+|-.|.++|..|++.|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            368999999999999999999999999999974

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.95  E-value=0.0067  Score=53.91  Aligned_cols=34  Identities=24%  Similarity=0.520  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||||..|+-+|..|++.|.+|+|+++...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            5799999999999999999999999999998654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.94  E-value=0.0068  Score=54.93  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+...+|.|||.|..|..+|..|++.|++|+++|+.+.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            45567999999999999999999999999999998753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.92  E-value=0.0081  Score=53.23  Aligned_cols=34  Identities=15%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.90  E-value=0.0068  Score=54.00  Aligned_cols=33  Identities=36%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            489999999999999999999999999999863

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.75  E-value=0.0088  Score=52.74  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            489999999999999999999999999999874

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.72  E-value=0.011  Score=52.52  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|.|||+|..|..+|..|+..|+ +|+++|..+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            4689999999999999999999999 999999874

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.72  E-value=0.035  Score=51.95  Aligned_cols=48  Identities=15%  Similarity=0.137  Sum_probs=33.6

Q ss_pred             HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe--cC-----CcEEeccEEEecCCC
Q 015303          109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL--AD-----GTILKTKVLIGCDGV  160 (409)
Q Consensus       109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~--~~-----g~~~~ad~vV~AdG~  160 (409)
                      .+.+.|.+.  +++++++++|+.++.  +.+.++.  .+     +.++.+|+++.|.|.
T Consensus       213 ~~~~~l~~~--gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          213 ILTKGLKEE--GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHT--TCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHC--CCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            344555443  899999999998853  4554443  23     457899999999884

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.71  E-value=0.0094  Score=53.05  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|..|..+|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            489999999999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.68  E-value=0.0082  Score=56.27  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||.|++|+++|..|+++|++|+++|.+..+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999987654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.66  E-value=0.012  Score=48.90  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35799999999999999999999999999998754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.62  E-value=0.012  Score=49.11  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.61  E-value=0.012  Score=55.35  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||.|.+|+++|..|+++|++|++.|++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            589999999999999999999999999999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.60  E-value=0.0043  Score=58.43  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|+|+|+|-.|..+|..|.+.|++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999999863

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.58  E-value=0.012  Score=51.64  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|..+|..|++.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.55  E-value=0.011  Score=52.17  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.+.+|.|||+|-.|...|..|++.|++|+++++++
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6666799999999999999999999999999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.53  E-value=0.015  Score=52.16  Aligned_cols=34  Identities=12%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-.|.++|..|++.|+ +|+++|.+..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            589999999999999999999998 9999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.53  E-value=0.011  Score=55.73  Aligned_cols=36  Identities=11%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHc-CC-ceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRL-GI-RSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~-~V~v~E~~~~   38 (409)
                      +..+|.|||+|-.|+.+|..|++. |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            346899999999999999999999 99 9999998866

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.44  E-value=0.015  Score=53.04  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|++|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45899999999999999999999999999998855

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.44  E-value=0.007  Score=50.86  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEE-EeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMV-LESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v-~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            35899999999999999999999999999 887644

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.43  E-value=0.014  Score=52.17  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcC----CceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLG----IRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g----~~V~v~E~~~~   38 (409)
                      ||..++|.|||+|-.|.++|..|++.|    ++|++++++..
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            344568999999999999999999999    79999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.41  E-value=0.017  Score=51.34  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999998754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.40  E-value=0.0085  Score=51.78  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||||.+|...+..|.+.|.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999999999999999999999753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.40  E-value=0.014  Score=54.64  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|+.+|..|++.|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            5899999999999999999999999999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.36  E-value=0.018  Score=51.58  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-.|..+|..|+..|+ +|+++|.+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            589999999999999999999999 9999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.35  E-value=0.041  Score=52.34  Aligned_cols=44  Identities=16%  Similarity=0.043  Sum_probs=37.3

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI  163 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  163 (409)
                      +++++++++|+.+..++....+.+.+|.++.+|.||.|.|..+.
T Consensus       271 GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~  314 (493)
T 1y56_A          271 GIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPD  314 (493)
T ss_dssp             TCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEEC
T ss_pred             CcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcC
Confidence            89999999999998665545677888889999999999998654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.35  E-value=0.016  Score=51.79  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.++|..|++.|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999999998  999999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.33  E-value=0.016  Score=52.42  Aligned_cols=35  Identities=29%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998643

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.32  E-value=0.019  Score=51.08  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|..|...|..|++.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.28  E-value=0.019  Score=51.06  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|..|.++|..|+..|+ +|+++|....
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            4689999999999999999999999 9999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.23  E-value=0.017  Score=52.25  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+.+|..|...|.+|+++|++..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45899999999999999999999999999998854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.19  E-value=0.016  Score=50.88  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||+|..|...|..|+ .|++|+++|+.+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            468999999999999999999 9999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.19  E-value=0.018  Score=54.49  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|-.|+.+|..|++.|++|+++|+++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            36899999999999999999999999999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.16  E-value=0.02  Score=54.10  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            45899999999999999999999999999998754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.15  E-value=0.65  Score=47.12  Aligned_cols=55  Identities=11%  Similarity=0.076  Sum_probs=42.5

Q ss_pred             HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC------CcEEeccEEEecCCCchHHHh
Q 015303          108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD------GTILKTKVLIGCDGVNSIVAK  166 (409)
Q Consensus       108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~ad~vV~AdG~~S~vr~  166 (409)
                      ..|.+.|.+   +.+|+++++|+.|...+++|+|++.+      +.+++||.||.|.-. ..+++
T Consensus       572 ~~L~~aLa~---~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl-~vLk~  632 (852)
T 2xag_A          572 SCVPVALAE---GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL-GVLKQ  632 (852)
T ss_dssp             THHHHHHTT---TCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCH-HHHHC
T ss_pred             HHHHHHHHh---CCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCH-HHHHh
Confidence            455566655   45799999999999999999998876      568999999988874 34443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.15  E-value=0.022  Score=48.65  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46899999999999999999999999999998754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.12  E-value=0.019  Score=50.91  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.++|..|+ .|.+|++++|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            58999999999999999999 999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.12  E-value=0.024  Score=50.41  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|..|.++|..|+..|+ +|.++|....
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            4689999999999999999999998 9999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.10  E-value=0.026  Score=50.01  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|..|...|..|++.|++|+++|+++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.05  E-value=0.043  Score=47.31  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC----CceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG----IRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g----~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.+.|..|++.|    ++|.++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            458999999999999999999999    69999998765

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.01  E-value=0.023  Score=50.31  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.01  E-value=0.02  Score=52.90  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.01  E-value=0.021  Score=48.90  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-.|..+|..|++.|. +|+|+|++..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            589999999999999999999998 8999998753

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.00  E-value=0.023  Score=51.12  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|.|||+|-.|.++|..|++.|++|+++++.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999999999999999863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.00  E-value=0.02  Score=54.05  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      |++..+|.|||.|-.|+.+|..|++.  |++|+++|+++.
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            44446899999999999999999999  899999998753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.00  E-value=0.021  Score=53.31  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999998865

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.99  E-value=0.012  Score=53.68  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|-.|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.98  E-value=0.024  Score=50.49  Aligned_cols=36  Identities=17%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      |++.+|+|||+|-.|.++|..|+..|+  +|.++|.+.
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            345799999999999999999999885  899999763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.95  E-value=0.025  Score=50.36  Aligned_cols=34  Identities=15%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|.++|..|+..|+  +|+++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4799999999999999999999998  899999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.92  E-value=0.0089  Score=46.39  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|..+|..|++.|.+|+++++...
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998743

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.92  E-value=0.025  Score=50.02  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|-.|..+|..|++.|++|+++|+++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35899999999999999999999999999998743

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.91  E-value=0.025  Score=49.56  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.|...|..|++.|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.90  E-value=0.025  Score=53.30  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.90  E-value=0.028  Score=50.10  Aligned_cols=34  Identities=26%  Similarity=0.597  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|..|+..|+  +|+++|...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4689999999999999999999997  899999753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.90  E-value=0.03  Score=50.07  Aligned_cols=34  Identities=15%  Similarity=0.066  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHH-HHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLT-TSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~-~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|.+|++ +|..|+++|++|++.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            47999999999996 89999999999999998754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.88  E-value=0.032  Score=48.71  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC---ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI---RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~---~V~v~E~~~~   38 (409)
                      +.+|.|||+|-.|.++|..|++.|+   +|+++|+++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4689999999999999999999999   9999998754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.80  E-value=0.025  Score=49.57  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|-.|...|..|++.|++|+++|+++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.78  E-value=0.025  Score=53.46  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.+.+|.|||+|..|..+|..|++.|++|++++|.+.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3457999999999999999999999999999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.78  E-value=0.035  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|..+|..|++.|++|.+++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998743

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.78  E-value=0.02  Score=51.04  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.|..+|..|++.| ++|+++|+++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            57999999999999999999999 99999998853

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.72  E-value=0.029  Score=49.99  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|.++|..|++.|++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            358999999999999999999999999999 653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.71  E-value=0.033  Score=49.37  Aligned_cols=33  Identities=33%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||+|-.|..+|..|+..|+ +|+++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            489999999999999999999997 999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.68  E-value=0.033  Score=52.01  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6899999999999999999999999999999875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.65  E-value=0.024  Score=52.49  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|+.+|..|++ |++|+++|+++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            589999999999999999998 999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.61  E-value=0.034  Score=49.64  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            4899999999999999999999999999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.61  E-value=0.044  Score=51.72  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            58999999999999999999999999999998754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.59  E-value=0.033  Score=49.50  Aligned_cols=37  Identities=22%  Similarity=0.493  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      |.++.+|+|||+|-.|.++|..|+..++  ++.|+|.+.
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            4556799999999999999999999886  899999753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.57  E-value=0.035  Score=50.17  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|+|||-||..+|..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999999 999999873

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.56  E-value=0.16  Score=44.65  Aligned_cols=33  Identities=9%  Similarity=0.209  Sum_probs=26.1

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+++|||||. +++.+|..+++.|.+|+++++..
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            4688888886 56788888888899999987653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.55  E-value=0.038  Score=49.02  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      +|+|||+|-.|..+|..|++.  |.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999985  789999998753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.54  E-value=0.04  Score=48.94  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|.|||.|..|.++|..|++.|+  +|+++|+++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            589999999999999999999999  9999998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.53  E-value=0.03  Score=52.39  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|-.|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.52  E-value=0.032  Score=51.41  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35799999999999999999999999999998754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.49  E-value=0.026  Score=50.18  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-----C-CceEEEeC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL-----G-IRSMVLES   35 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~-----g-~~V~v~E~   35 (409)
                      ++|.|||+|..|.++|..|++.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999987

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.48  E-value=0.047  Score=47.65  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|.|+|..|..++..|.+.|++|+++.|...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5899999999999999999999999999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.45  E-value=0.034  Score=49.42  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|.|||.|..|..+|..|++.|+ +|+++|++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            589999999999999999999999 999999874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.45  E-value=0.032  Score=50.04  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.44  E-value=0.042  Score=51.76  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...+|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.37  E-value=0.031  Score=46.88  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=32.3

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+....|+|.|| |..|..++..|.++|++|.++.|...
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            554468999996 99999999999999999999999754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.33  E-value=0.04  Score=50.53  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|.+|+.+|..|...|.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.33  E-value=0.024  Score=51.35  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-------CceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-------IRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-------~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       89999998755

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.32  E-value=0.045  Score=51.70  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.29  E-value=0.053  Score=51.44  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            58999999999999999999999999999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.28  E-value=0.042  Score=49.89  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|.+|.+++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.27  E-value=0.041  Score=48.27  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|+|||+|..|.++|..|++.|+  +|+++|..+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            79999999999999999999998  8999998753

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.24  E-value=0.048  Score=50.38  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ||+...|+|+|||..|..++..+.+.|++|.++| .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            5566799999999999999999999999999999 54

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.049  Score=51.68  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=94.21  E-value=0.055  Score=46.18  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC----ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI----RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~----~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.+.|..|.+.|+    +|.++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            479999999999999999999998    9999998743

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.21  E-value=0.041  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|++.|+  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            69999999999999999999999  999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.18  E-value=0.014  Score=48.95  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      .++|.|||.|..|.++|..|++.|++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            46899999999999999999999999999987

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.18  E-value=0.042  Score=48.44  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|..|...|..|++.|++|.++|+++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4899999999999999999999999999998643

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.17  E-value=0.038  Score=50.55  Aligned_cols=34  Identities=18%  Similarity=-0.008  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-------CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG-------IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g-------~~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|..|++.|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            37999999999999999999999       99999998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.14  E-value=0.048  Score=47.48  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|..|.++|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.11  E-value=0.053  Score=48.96  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~   36 (409)
                      .+.+|+|+|+|-+|..+|..|...|. +|+|+|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            35689999999999999999999998 79999987

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.11  E-value=0.045  Score=47.77  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|.|||..|..++..|.++|++|+++.|+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            4799999999999999999999999999998753

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.10  E-value=0.054  Score=47.39  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|.|||+ |-.|..+|..|++.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999 9999999999999999999999764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.09  E-value=0.051  Score=45.10  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+||| +|-.|..+|..|++.|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 99999999999999999999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.03  E-value=0.02  Score=48.49  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3579999999999999999999999 999998754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.93  E-value=0.052  Score=46.76  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      +|.|||+|-.|...|..|++.| ++|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.93  E-value=0.054  Score=47.94  Aligned_cols=33  Identities=18%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|+|||+|..|.++|..|++.|+  +|.++|....
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            79999999999999999999997  8999998753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.89  E-value=0.056  Score=47.65  Aligned_cols=34  Identities=29%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.||| +|..|.++|..|++.|++|.++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3799999 999999999999999999999997643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.88  E-value=0.076  Score=43.54  Aligned_cols=34  Identities=38%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|.|| |-.|..++..|.+.|++|.++.|+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            58999999 99999999999999999999998754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.87  E-value=0.063  Score=47.73  Aligned_cols=34  Identities=26%  Similarity=0.574  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|..|+..|+  +|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            3689999999999999999999886  799999864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.86  E-value=0.055  Score=47.22  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4689999999999999999999997 7999998754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.86  E-value=0.063  Score=48.90  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|..|..+|..|+..|.+|+++|+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.86  E-value=0.059  Score=46.57  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      .+|.|||+|-.|...|..|++.|++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5899999999999999999999999 89999764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.85  E-value=0.058  Score=47.40  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|-.|...|..|++.|++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999999999999999999999999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.84  E-value=0.062  Score=48.18  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|.|||.|..|.++|..|++.|++|.++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.81  E-value=0.063  Score=47.74  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|..|+..|+  ++.++|...
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            4689999999999999999999987  899999853

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.76  E-value=0.064  Score=50.77  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.73  E-value=0.069  Score=47.46  Aligned_cols=34  Identities=15%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|.|||+|..|..+|..|+..|+  +|.++|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3589999999999999999999998  899999854

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=93.69  E-value=0.045  Score=48.96  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=32.5

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~~   37 (409)
                      |.++++|+|+|| |..|..++..|.+.|+       +|.++|+..
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            666679999998 9999999999999986       899999753

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.68  E-value=0.065  Score=49.66  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.||.+|..|++.|++|+.+|-++.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            5899999999999999999999999999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.67  E-value=0.071  Score=47.47  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|+.+|..|++.|+ +++|+|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            4689999999999999999999998 7999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.66  E-value=0.06  Score=47.73  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|++.|  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            7999999999999999999999  6899999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.65  E-value=0.058  Score=47.19  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|++ |++|+++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            69999999999999999999 999999998743

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.64  E-value=0.064  Score=47.26  Aligned_cols=34  Identities=35%  Similarity=0.616  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|+|||+|..|..+|..|+..|+  +|+|+|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            589999999999999999999998  9999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.62  E-value=0.057  Score=51.08  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|+.+|..|++.  |++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            4899999999999999999998  799999998753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.56  E-value=0.076  Score=48.47  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|..|..+|..|+..|.+|+++|++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.56  E-value=0.048  Score=50.31  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|-.|+.+|..|++ |++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~   33 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            69999999999999999999 999999998753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.55  E-value=0.084  Score=45.75  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|-+|.++|..|++.|.+|++++|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999998763

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.54  E-value=0.055  Score=47.64  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.+||-|..|...|..|.+.|++|+++|+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998765

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.47  E-value=0.076  Score=46.26  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|.|||+|..|.++|..|++.|+  +|+++|+++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            79999999999999999999998  899999764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.44  E-value=0.085  Score=47.91  Aligned_cols=34  Identities=15%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|+|||..|..+|+.+.+.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3799999999999999999999999999998765

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.41  E-value=0.076  Score=45.44  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            3589999999999999999999998 7999998754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.35  E-value=0.097  Score=45.07  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|+|+|-+|.++|..|++.|.+|+|+.|...
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.34  E-value=0.094  Score=46.74  Aligned_cols=33  Identities=15%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~   36 (409)
                      ..+|+|||+|-.|.++|+.|+..|+  ++.|+|..
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            4689999999999999999999997  89999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.33  E-value=0.1  Score=51.94  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=32.0

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVG--AGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG--~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+..
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            4699999  9999999999999999999999988654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.32  E-value=0.097  Score=43.48  Aligned_cols=33  Identities=24%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            6999996 99999999999999999999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.32  E-value=0.076  Score=49.84  Aligned_cols=34  Identities=26%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||||.+|...+..|.+.|.+|+|+++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            4689999999999999999999999999999753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.32  E-value=0.08  Score=49.51  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|..|..+|..|+..|.+|+++|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.31  E-value=0.096  Score=46.94  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             CcccEEEECC-ChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            3 SVEDIVIVGA-GIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~-G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ...+|+|||+ |-.|.++|..|+..|+  +|+++|...
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3468999997 9999999999999985  899999753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.30  E-value=0.08  Score=50.02  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|-.|..+|..|++.|++|+++++.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            379999999999999999999999999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.23  E-value=0.046  Score=50.52  Aligned_cols=31  Identities=23%  Similarity=0.157  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHH-cCCceEEEeC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR-LGIRSMVLES   35 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      ++|+|||+|-.|.++|..|++ .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            489999999999999999998 5999999993

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.16  E-value=0.1  Score=44.03  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|.|| |-.|..++..|+++|++|+++.|+..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            458999998 99999999999999999999998754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.15  E-value=0.11  Score=47.43  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|..|..++..+.+.|++|.++|..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35899999999999999999999999999998654

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.13  E-value=0.11  Score=47.63  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|..|..+|..+.+.|++|.++|..+.
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35799999999999999999999999999997653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.09  E-value=0.1  Score=46.92  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||+|..|.++|..|++.|++|+++++...
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            4799999999999999999999999999998743

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.03  E-value=0.094  Score=46.09  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..|+|+|+|.+|.++|..|++.|. +|+|++|..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999998 899999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.02  E-value=0.077  Score=52.88  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=93.02  E-value=0.088  Score=46.10  Aligned_cols=33  Identities=27%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~   37 (409)
                      .+|.|||+|-.|.++|..|++.  |.+|.++|+++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            5899999999999999999988  57899998763

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.00  E-value=0.11  Score=45.48  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|.|| |..|..++..|.++|++|+++-|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6999999 99999999999999999999998754

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=92.95  E-value=0.13  Score=46.12  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++...|+|.|| |..|..++..|++.|++|+++++...
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            555578999995 99999999999999999999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.95  E-value=0.11  Score=43.23  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|.|| |..|..++..|.++|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999998 9999999999999999999999864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.94  E-value=0.12  Score=45.45  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|.|||+|..|..+|..|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999874

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.93  E-value=0.11  Score=46.00  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|.|| |..|..++..|.+.|++|++++|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999999 99999999999999999999998765

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.92  E-value=0.12  Score=45.62  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|.|||+|..|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=92.89  E-value=0.1  Score=47.82  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3589999999999999999999999999999864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.88  E-value=0.1  Score=47.15  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            3589999999999999999999998 7999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.86  E-value=0.099  Score=45.42  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|-+|.++|..|.+.|.+|++++|..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999874

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.83  E-value=0.084  Score=45.35  Aligned_cols=33  Identities=24%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|-.|...|..|++.|.+|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            489999999999999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.73  E-value=0.11  Score=49.03  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||+|..|..+|..|+..|.+|+++|+.+.
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998743

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=92.68  E-value=0.091  Score=45.25  Aligned_cols=30  Identities=17%  Similarity=0.178  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999876

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.56  E-value=0.099  Score=45.34  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|-+|.++|..|++.|.+|+|++|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.56  E-value=0.11  Score=45.09  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..|+|+|+|-+|.++|..|++.|. +|+|+.|...
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            579999999999999999999998 8999998754

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.52  E-value=0.078  Score=46.52  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|...|..|++.|++|++++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            479999999999999999999999999998 543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.51  E-value=0.13  Score=45.85  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|.++|..|+..++  ++.|+|.+.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            4689999999999999999999886  799999753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.48  E-value=0.13  Score=49.89  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..|+|||+|..|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            47999999999999999999999999999998763

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.46  E-value=0.094  Score=52.20  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.45  E-value=0.085  Score=47.18  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=29.9

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCC
Q 015303            4 VEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~   36 (409)
                      +.+|+|+|| |..|.+++..|+..|+       +|.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            479999998 9999999999999886       79999976

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.45  E-value=0.15  Score=43.63  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|||+|-+|.+++..|++.|. +|+|++|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            79999999999999999999998 8999998753

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=92.44  E-value=0.13  Score=45.52  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +|+|||+|..|.++|..|+..|+ +|.|+|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999898 699999874

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=92.42  E-value=0.15  Score=46.49  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ....++|+|||..|.++|..++..|++|+|+|.++.
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            346899999999999999999999999999998765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.31  E-value=0.15  Score=44.84  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+....|+|+|| |-.|..++..|.+.|++|.++.|...
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            543457999998 99999999999999999999998754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.20  E-value=0.17  Score=46.97  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|+|+|..|..++..+.+.|++|.++|..+
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3589999999999999999999999999999764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=92.11  E-value=0.16  Score=43.76  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||+|-+|.+.|..|.+.|.+|++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999874

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.08  E-value=0.16  Score=44.78  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+....|+|+|| |-.|..++..|.+.|++|.++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   39 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   39 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            543468999997 99999999999999999999998754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=92.06  E-value=0.15  Score=48.98  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|+.+|..|++.|+ +++|+|.+..
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3589999999999999999999998 7999998764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=91.28  E-value=0.028  Score=46.34  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|.+.|++|+++++...
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            35799999999999999999999999999998654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.93  E-value=0.19  Score=44.43  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3579999999999999999999998 899999873

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.90  E-value=0.19  Score=43.80  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.+++..|++.|. +|+|+.|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3579999999999999999999998 699998874

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.88  E-value=0.16  Score=44.45  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|.|||+|-.|.++|+.|+.+++  ++.|+|...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            79999999999999999998885  799999764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=91.81  E-value=0.16  Score=45.70  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence            4689999999999999999999998 7999997753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.81  E-value=0.15  Score=45.17  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcC--CceEEEeCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLG--IRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g--~~V~v~E~~~   37 (409)
                      +|+|||| |-.|..+|..|+..|  .+|.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999999988  5899999875

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=91.74  E-value=0.19  Score=46.90  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+.++||+|||||++|+++|..|++.|++|+|+|+++.+
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY   41 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            667799999999999999999999999999999998754

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=91.73  E-value=0.12  Score=46.34  Aligned_cols=35  Identities=20%  Similarity=0.188  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...++|+|||..+.++|..++..|++|+|+|.++.
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~  233 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPN  233 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            45899999999999999999999999999998765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=91.72  E-value=0.18  Score=44.12  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=32.0

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      |+++..|+|.|| |-.|..++..|.+.| ++|.++.|++.
T Consensus         2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~   41 (299)
T 2wm3_A            2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR   41 (299)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC
Confidence            444468999999 999999999999999 99999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.72  E-value=0.13  Score=47.73  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -+.-|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3688999999999999999999999999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=91.69  E-value=0.15  Score=46.93  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|||+|..|.++|..|+..|. +|+++++..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999763

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.66  E-value=0.12  Score=51.43  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|.-.|..++..|++|+|+|..+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            4899999999999999999999999999998754

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=91.65  E-value=0.14  Score=45.57  Aligned_cols=35  Identities=14%  Similarity=0.075  Sum_probs=30.5

Q ss_pred             cccEEEEC-CChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303            4 VEDIVIVG-AGIAGLTTSLGLYRLG--IRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG-~G~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      +.+|+|+| +|..|.+++..|+..|  .+|.++|....
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~   45 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA   45 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            36899999 7999999999999988  68999997643

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.64  E-value=0.2  Score=43.53  Aligned_cols=34  Identities=18%  Similarity=0.013  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.+++..|++.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3589999999999999999999998 899999774

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=91.54  E-value=0.16  Score=48.64  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~V  362 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  362 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            3589999999999999999999998 7999997753

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=91.42  E-value=0.2  Score=46.10  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3589999999999999999999999999999865

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.41  E-value=0.23  Score=42.94  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3579999999999999999999996 899998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	6e-19
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-18
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-17
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	6e-15
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	3e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	9e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	9e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-05
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	4e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	7e-05
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	8e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.003
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.003
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.004
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 85.5 bits (210), Expect = 6e-19
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 66/381 (17%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGL-----YRLGIRSMVLESSESLRVTGFAFTVWTNAWKA 55
            ES  D++IVGAG AGL  +  L      +  ++  +++   +    G A  +     ++
Sbjct: 4   SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 63

Query: 56  LDAVGIGNSLRQQHQQLRSI-VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETL 114
           L  +G+ + +  +   + +I +  P  +G       +           + V  +  +E  
Sbjct: 64  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERR 123

Query: 115 AKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPA 174
             +            ++       K+        ++       D     V   L +    
Sbjct: 124 ILD-----------SIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRY---- 168

Query: 175 FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED 234
                +       K  +G   + LQ   +   +  +P   +                   
Sbjct: 169 MSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEA------------------ 210

Query: 235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGD 294
              E++      +         V      + I++ +                  V +AGD
Sbjct: 211 --GEIETVHCKYVIGCDGGHSWVRRTLGFEMIVTEKFSK------------DERVFIAGD 256

Query: 295 ALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKER 354
           A H  +P  GQG   ++ D   L   +   L      G    +         LK Y +ER
Sbjct: 257 ACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT-----GRAKRD--------ILKTYEEER 303

Query: 355 RWRCFELISIAYLVGSIQQSD 375
           +     LI   +    +    
Sbjct: 304 QPFAQALIDFDHQFSRLFSGR 324

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.3 bits (199), Expect = 6e-18
 Identities = 50/245 (20%), Positives = 77/245 (31%), Gaps = 10/245 (4%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
           DI+I GAGI GL+ +L L++ GI    +LESS  +R  G    +   A +AL  +G+G +
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 65  LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLL--ETLAKELPSGT 122
           L         +           SE      G              ++    + + L    
Sbjct: 63  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 122

Query: 123 IRYSSQVVSIEESGHFKLLHLADGT----ILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 178
           +R    V  IEE     L+   DG      L   VL+G DG++S V   L          
Sbjct: 123 VRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRDP 182

Query: 179 SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
               G                    G        D   +       +      L ++   
Sbjct: 183 LPHWGRGRITLLGDAAHLMYPMGANGASQAI--LDGIELAAALARNADV-AAALREYEEA 239

Query: 239 LKQFV 243
            +   
Sbjct: 240 RRPTA 244

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 287 GSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMG 346
           G + + GDA H M P    G   A+ DGI LA  +                  N  V   
Sbjct: 189 GRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----------------NADVAAA 232

Query: 347 LKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388
           L+ Y + RR    ++I         + +        +   L 
Sbjct: 233 LREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALE 274

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 78.2 bits (191), Expect = 5e-17
 Identities = 50/315 (15%), Positives = 81/315 (25%), Gaps = 53/315 (16%)

Query: 3   SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLE-SSESLRVTGFAFTVWTNAWKALDAVGI 61
           + + I +VG  I+GLT +L L   G+   V E S + L   G    V       L   G+
Sbjct: 3   TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV 62

Query: 62  GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
                         ++ P+ S +     + +  G             +            
Sbjct: 63  EL----------DSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYE-LFGPE 111

Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
               S  +V + +      +  +DGT  +   +IG DG  S+V K L             
Sbjct: 112 RYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMV--- 168

Query: 182 RGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQ 241
                                                       ++         A    
Sbjct: 169 ---------------------------HGRVLLIGDAAVTPRPHAAAGGAKASDDARTLA 201

Query: 242 FVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTP 301
            V  K HDL   +++               Q +Q    L       S    G +  P  P
Sbjct: 202 EVFTKNHDLRGSLQSW-----------ETRQLQQGHAYLNKVKKMASRLQHGGSFEPGNP 250

Query: 302 DIGQGGCAALEDGIV 316
               G     E  +V
Sbjct: 251 AFAFGLPKVDEPSVV 265

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 16/83 (19%)

Query: 294 DALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKE 353
           DA     P    GG  A +D   LA    +                   +   L+ +   
Sbjct: 177 DAAVTPRPHAAAGGAKASDDARTLAEVFTKN----------------HDLRGSLQSWETR 220

Query: 354 RRWRCFELISIAYLVGSIQQSDG 376
           +  +    ++    + S  Q  G
Sbjct: 221 QLQQGHAYLNKVKKMASRLQHGG 243

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 72.7 bits (177), Expect = 6e-15
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 11/170 (6%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG--FAFTVWTNAWKALDAVGIGN 63
            + I+GAG +GL     L++ GI +++LE      V G   A  +       L   G+  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 64  SLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKL--LLETLAKELPSG 121
            + +       +     I+      R    +   G+      + ++   L    +   + 
Sbjct: 64  RMARDGLVHEGV----EIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT 119

Query: 122 TIRYSSQVVSI-EESGHFKLLHLADGTI--LKTKVLIGCDGVNSIVAKWL 168
           T+  +++V     +     +    DG    L    + GCDG + I  + +
Sbjct: 120 TVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSI 169

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 52.3 bits (123), Expect = 4e-08
 Identities = 40/355 (11%), Positives = 92/355 (25%), Gaps = 43/355 (12%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRS-MVLESSE-------SLRVTGFAFTVWTNAWKALD 57
            +++VGAG++G++ +  L   GI   ++LE+++            G    +  N  + ++
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 58  AVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE 117
              +       +  L+             +           ++  + +     +E + ++
Sbjct: 62  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121

Query: 118 LPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVG 177
           L +         +SI                    V+                     V 
Sbjct: 122 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVP 181

Query: 178 RSAIRGYSDFKGSH-----------GFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSS 226
            +    + D                     +L+   K  +          +     ++  
Sbjct: 182 LATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPG 241

Query: 227 SQDKELED-------------HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQY 273
               + ED                 L+  ++     LP      I +     +  +R +Y
Sbjct: 242 GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV--NRYEY 299

Query: 274 RQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK 328
            Q +         G V   G+           G   A   GI  A  +    + K
Sbjct: 300 DQLRA------PVGRVYFTGEHTSEHYNGYVHG---AYLSGIDSAEILINCAQKK 345

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 6   DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNS 64
           D++++G G +GL  ++G    G   ++L+    L R    +     N    L    I   
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 65  LRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKL---LLETLAKELPS- 120
           +    + L S  +        +   +L V+ K  +H            +++ L   L   
Sbjct: 64  IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123

Query: 121 -GTIRYSSQVVSIE-ESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 165
              IR ++ V +IE E+G  K + L  G +L+T  ++   G  S+  
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQ 170

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 8/170 (4%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL----RVTGFAFTVWTNAWKAL 56
           M    + +I+GAG AGL  +  L +LG    V ++ + +     ++G  F  +TN  +  
Sbjct: 1   MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTN-LEVT 59

Query: 57  DAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAK 116
            A  +  +       L        IS       +   +            + + +     
Sbjct: 60  PAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSEC 119

Query: 117 ELPSGTIRYSSQVVSIE---ESGHFKLLHLADGTILKTKVLIGCDGVNSI 163
           +     I   S+V  +E        + +   + T  + K LI   G  S+
Sbjct: 120 DKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSM 169

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDA 58
          D+V+VG GI+G+  +  L+  G+  +VLE+ +  RV G  +T+     K +D 
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYTLRNQKVKYVDL 51

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
          M S + +V++G+G+ GL+++L L R G    +L       V+   F       
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGA 55

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK 54
          ++ +VG GI+GL  +  L   G  +++LESS   R+ G   T     + 
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA--RLGGAVGTHALAGYL 48

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37
          M+   + V++G GI G   +  L +    + + ES  
Sbjct: 1  MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-----SSESLRVTGFAFTVWTNAWKAL 56
          D+VI+G+G AGL  ++     G + ++LE        +    G      T     L
Sbjct: 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKL 80

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
           +VIVGAG+AGL+ +  L   G +  VLE+SE  R  G   T      
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RPGGRVRTYRNEEA 77

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 1   MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-------SLRVTGFAFTVWTNAW 53
           M+   D++++G G+     S  +   G + + ++ +        S+      +  +    
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 54  KALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKL 109
              + +G G            +     +     +E +  +  K  E        K+
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKI 118

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
           ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T 
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATF 47

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK 54
          D +IVG+G+ G   +  L +L  + +V+E      + G A+T      +
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN--HIGGNAYTEDCEGIQ 49

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 1  MESVE-DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAV 59
          M+    D +++G G+AGL  ++   + G+ ++VL      R    A      A      +
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60

Query: 60 GIGNSLRQQHQ 70
            G++      
Sbjct: 61 SDGDNEDLHFM 71

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAW 53
           +++VGAG AG   SL   + G   ++++ +              NA 
Sbjct: 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAV 68

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 9/38 (23%), Positives = 23/38 (60%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG 43
          D+++VGAG  G+     L + G++++++++ +     G
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK 54
          I+IVGAG +G      L   G +  +++  +   + G ++    +   
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD--HIGGNSYDARDSETN 50

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-----SSESLRVTGFAFTVWTNAWKA 55
          D+V+VG+G AG + ++     G + +++E        +    G     WT+  KA
Sbjct: 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKA 72

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 7/39 (17%), Positives = 19/39 (48%)

Query: 1  MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39
          +++  D++++G GI     S  L   G + + ++  +  
Sbjct: 2  IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  IVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWK 54
          + ++GAG++GL  +  L   G+   V E+    +  G   +V  +   
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--KAGGKLRSVSQDGLI 49

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39
          D+++VGAG +GL     L  LG    V+E++  +
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVL 33
           IVI+GAGI G   +  L   G  ++ +
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITV 30

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR 40
          D V++GAG AG+  +L + + G    +L      R
Sbjct: 9  DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR 43

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 1  MESVE-DIVIVGAGIAGLTTSLGLYRLGIRSMVL 33
          M++ + D+ IVGAG AGL  ++   +    + + 
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIA 34

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 12/66 (18%), Positives = 28/66 (42%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
          D++IVG+G AG   ++   R GIR+ ++      ++          +    +   +  +L
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 66 RQQHQQ 71
          +    +
Sbjct: 63 KVHVDE 68

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 7  IVIVGAGIAGLTTSLGLYRLGIRSMVLES 35
          +V++GAG+ GL+T+L ++      +    
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 2  ESVE-DIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESLRVTGFAFTV--WTNAWK 54
          E VE DI+I+G G +G   +          G++  ++E +   R    A  +        
Sbjct: 18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYID 77

Query: 55 ALDAVGIGNSLRQQHQQLR 73
                  N+L    + + 
Sbjct: 78 LTGRSERQNTLEDYVRYVT 96

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 3  SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36
          +   ++IVGAG +G  T+  L + G+R  +L  S
Sbjct: 1  AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 6  DIVIVGAGIAGLTTSLGLYRL------GIRSMVLESSESLR 40
          D+VIVGAG AGL+ +  L +L       +R  ++E +  + 
Sbjct: 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 6  DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39
          D+VI+G G  G   ++   +LG ++  +E   +L
Sbjct: 5  DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	100.0
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	100.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.93
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.66
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.49
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.49
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.45
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.42
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.35
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.35
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.28
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.28
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.26
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.21
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.19
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.15
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.14
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.14
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.14
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.13
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.11
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.1
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.06
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.02
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.01
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.0
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.99
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.98
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.96
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.94
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.89
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.87
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.86
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.86
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.86
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.82
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.8
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.8
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.75
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.69
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.69
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.68
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.63
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.63
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.62
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.62
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.61
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.6
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.58
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.57
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.57
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.55
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.54
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.54
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.53
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.51
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.46
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.43
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.41
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.39
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.37
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.37
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.37
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.24
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.19
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.13
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.06
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.01
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.98
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.78
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.78
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.49
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.32
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.3
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.29
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.26
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.01
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.96
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.92
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.92
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.88
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.78
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.73
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.71
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.64
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.32
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.21
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.17
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.14
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.13
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.99
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.94
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.88
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.85
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.83
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.79
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.74
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.7
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.66
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.63
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.61
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.53
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.41
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.37
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.28
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.28
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.26
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.24
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.19
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.17
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.15
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.11
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.06
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.01
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.99
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.84
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.83
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.42
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.37
d3c96a2	111	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.36
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.3
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.18
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.12
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.05
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.03
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.89
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.78
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.7
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.63
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.52
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.14
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.01
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.91
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.81
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.81
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.18
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.69
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.46
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.33
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.13
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.02
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.47
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.86
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.51
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.48
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.22
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.22
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.2
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.9
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.66
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.93
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.89
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.71
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.63
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.5
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.34
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.28
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.13
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.72
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.68
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.66
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.61
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.57
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.35
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.31
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	86.08
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	85.61
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.48
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	85.38
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.67
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.04
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	83.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.28
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.11
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.01
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	82.79
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.56
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.37
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	82.07
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.04
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	81.91
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	81.76
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.33
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.24
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.73
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	80.7
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	80.54
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.44
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	80.28
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	80.16

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.7e-32  Score=244.12  Aligned_cols=268  Identities=26%  Similarity=0.323  Sum_probs=196.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+|||||||||++|+.|++.|+ +|+|+||++.+...++++.+++++++.|+++|+++.+............++. .
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~   79 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-S   79 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT-T
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcC-C
Confidence            3799999999999999999999997 8999999999999999999999999999999999999888776666665543 3


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHH----HHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEE
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLET----LAKELPSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVL  154 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~----L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~v  154 (409)
                      +.............. ........+......    ..+...++.+.++++++.+...++.+.+++.++    +++++|+|
T Consensus        80 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          80 GATVWSEPRGVEAGN-AYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             SCEEEEEECGGGGTC-SSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCEEEeccccccccc-cCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence            433322222222211 122223333333333    233335789999999999999999999998876    37899999


Q ss_pred             EecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303          155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED  234 (409)
Q Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |+|||.+|.+|+............                                                        
T Consensus       159 i~ADG~~S~vr~~~~~~~~~~~~~--------------------------------------------------------  182 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPDQRPLRDP--------------------------------------------------------  182 (288)
T ss_dssp             EECCCTTCHHHHHHCTTCCCCCCC--------------------------------------------------------
T ss_pred             eccCCccceeeeeecccccccccc--------------------------------------------------------
Confidence            999999999987763332111000                                                        


Q ss_pred             ChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303          235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a  314 (409)
                                                                    ...+..++++++|||+|.++|+.|||+|++++|+
T Consensus       183 ----------------------------------------------~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~  216 (288)
T d3c96a1         183 ----------------------------------------------LPHWGRGRITLLGDAAHLMYPMGANGASQAILDG  216 (288)
T ss_dssp             ----------------------------------------------CSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHH
T ss_pred             ----------------------------------------------ccccccCcceecccccceeCCccccchhhhhhhH
Confidence                                                          0023457899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303          315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL  391 (409)
Q Consensus       315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  391 (409)
                      ..|++.|.+.                .+...+|..|++.|++++..++..+..+..............++..++.+.
T Consensus       217 ~~l~~~l~~~----------------~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (288)
T d3c96a1         217 IELAAALARN----------------ADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAIT  277 (288)
T ss_dssp             HHHHHHHHHC----------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHhhC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHh
Confidence            9999999762                256789999999999999999999988877765444445555565555433

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=100.00  E-value=9.5e-35  Score=267.48  Aligned_cols=300  Identities=15%  Similarity=0.134  Sum_probs=186.2

Q ss_pred             CcccEEEECCChHHHHHHHHHH-----HcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLY-----RLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVA   77 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~-----~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ..|||+||||||+||++|..|+     ++|++|+||||++.+...++++.++|+++++|+++|+++++...+.+.....+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~   85 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   85 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEE
Confidence            3599999999999999999997     47999999999999999999999999999999999999999998888887776


Q ss_pred             eecCCCCcccccccccc--cccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303           78 TPTISGKPSSERSLKVQ--GKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTK  152 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  152 (409)
                      .....+...........  ..........+.+..+...+.+...   ..+....+.+.               +..+.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~d  150 (360)
T d1pn0a1          86 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLI---------------PEKMEID  150 (360)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEE---------------EEEEEEC
T ss_pred             EecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEecc---------------cceEEee
Confidence            65443322221111111  1111233446778888877776542   12221112111               2347899


Q ss_pred             EEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeee---cCCcEEEEEecCCCe--EEE---EEEec
Q 015303          153 VLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFF---GKGLRSGFIPCDDQT--IYW---FFTWT  224 (409)
Q Consensus       153 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~--~~~---~~~~~  224 (409)
                      .+++|||.+|.+|...............    ......   ...+..++   ......+.+|.....  ...   -....
T Consensus       151 ~~~~~dg~~s~v~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (360)
T d1pn0a1         151 SSKAEDPEAYPVTMTLRYMSEDESTPLQ----FGHKTE---NGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIG  223 (360)
T ss_dssp             GGGTTCTTCCCEEEEEEECCGGGSCCCT----TCCCCC---SSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEE
T ss_pred             EEEEeecCCcceEEEEEEeeccccccee----eeeecC---CCceEEeeecCCcccceeecCcccchhhHHHHHHHhhcC
Confidence            9999999999987654221111100000    000000   00000000   000000111211110  000   00000


Q ss_pred             CCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCccccccccc-CCCcEEEeccCcCCCCCCc
Q 015303          225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNI-SRGSVCVAGDALHPMTPDI  303 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~lvGDAA~~~~P~~  303 (409)
                      ....                     .... ....           +.     ......+| ..+|++|+|||||.++|+.
T Consensus       224 ~~~~---------------------~~~~-~~~~-----------~~-----~~~~~~~~~~~grv~LvGDAAH~~~P~~  265 (360)
T d1pn0a1         224 CDGG---------------------HSWV-RRTL-----------GF-----EMIVTEKFSKDERVFIAGDACHTHSPKA  265 (360)
T ss_dssp             CCCT---------------------TCHH-HHHH-----------TC-----CCEECSCSEETTTEEECGGGTEECCSTT
T ss_pred             cccc---------------------cchh-hccc-----------cc-----ccchhhheeecCcEEEccCccccccccc
Confidence            0000                     0000 0000           00     00011233 3589999999999999999


Q ss_pred             ccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC
Q 015303          304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD  375 (409)
Q Consensus       304 g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  375 (409)
                      |||+|+||+||..|++.|....++.             ..+.+|++|+++|++++..++..++.+.++++..
T Consensus       266 GqG~n~al~Da~~La~~l~~~~~~~-------------~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  324 (360)
T d1pn0a1         266 GQGMNTSMMDTYNLGWKLGLVLTGR-------------AKRDILKTYEEERQPFAQALIDFDHQFSRLFSGR  324 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTC-------------BCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCcccHHHHHHHHHHHHHHhcCC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999887754             3457799999999999999999999999988754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=5.4e-28  Score=215.52  Aligned_cols=257  Identities=19%  Similarity=0.222  Sum_probs=189.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+||++|+.|+++|++|+|+||++.+.  ..+++..+++.++++|+++|+++.+...+.+.....+.+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   81 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence            5799999999999999999999999999999987542  35578889999999999999999999988888887776533


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeE-EEEEEeCCeEEEEec-CCc--EEeccEEE
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQV-VSIEESGHFKLLHLA-DGT--ILKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v-~~i~~~~~~v~v~~~-~g~--~~~ad~vV  155 (409)
                      ...   ......  .......+.+.+..+.+.|.+.+.  +..+.+++.. ..+..+++.+.|++. +|+  +++||+||
T Consensus        82 ~~~---~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vV  156 (292)
T d1k0ia1          82 QRR---RIDLKR--LSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (292)
T ss_dssp             EEE---EECHHH--HHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             ccc---cccccc--ccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEE
Confidence            211   111111  112344567889999999887652  3455555554 455555667777664 443  57899999


Q ss_pred             ecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303          156 GCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH  235 (409)
Q Consensus       156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      +|||.+|.+|+.+.                                                                  
T Consensus       157 gADG~~S~vR~~i~------------------------------------------------------------------  170 (292)
T d1k0ia1         157 GCDGFHGISRQSIP------------------------------------------------------------------  170 (292)
T ss_dssp             ECCCTTCSTGGGSC------------------------------------------------------------------
T ss_pred             ECCCCCCcccceee------------------------------------------------------------------
Confidence            99999999997531                                                                  


Q ss_pred             hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303          236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~  315 (409)
                                                               .    ..+..++..++||++|.++|..|+|+|.++.|+.
T Consensus       171 -----------------------------------------~----~~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~  205 (292)
T d1k0ia1         171 -----------------------------------------A----ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS  205 (292)
T ss_dssp             -----------------------------------------G----GGSEETTEEECGGGTEECCGGGTCHHHHHHHHHH
T ss_pred             -----------------------------------------e----ccccccccccceeeeeecCCcccccccccccccc
Confidence                                                     0    0123467889999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec---cCchhHHHHHHHHHHHH
Q 015303          316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ---SDGKILNFLRDKILASF  390 (409)
Q Consensus       316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~---~~~~~~~~~r~~~~~~~  390 (409)
                      .+++.+...+.+.+              ...+..|...+..+.....+.+..+..+.+   ...++...+|...+.++
T Consensus       206 ~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~  269 (292)
T d1k0ia1         206 TLYRLLLKAYREGR--------------GELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYY  269 (292)
T ss_dssp             HHHHHHHHHHHHCC--------------GGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccccceeeEecCCC--------------HHHhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            99999988887531              245666666666666666666665555444   44567777777666543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.93  E-value=9.3e-25  Score=191.43  Aligned_cols=236  Identities=21%  Similarity=0.233  Sum_probs=178.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+|+||||||+|+++|+.|+++|++|+||||++.+ ...++++.+++.+.+.|+.+|+..+....  ........+...
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV--PSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB--CCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhcc--CCCcceeEeccC
Confidence            468999999999999999999999999999998765 34578888999999999999987665433  233444444334


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                      +.......         ..........+...+.....+..++++++++++.+.++.+++++.||+++++|++|+|||.+|
T Consensus        82 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          82 GERVGSVP---------ADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             CCEEEEEE---------CCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             Cceecccc---------cccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            33322111         112233445555555666667899999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHH
Q 015303          163 IVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF  242 (409)
Q Consensus       163 ~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (409)
                      .+|..+.....                                                                     
T Consensus       153 ~~r~~~~~~~~---------------------------------------------------------------------  163 (265)
T d2voua1         153 VVRKRLLGIET---------------------------------------------------------------------  163 (265)
T ss_dssp             HHHHHHHCCCC---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            88753210000                                                                     


Q ss_pred             HHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHH
Q 015303          243 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN  322 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~  322 (409)
                                                    .   .     .+....+...||++|...|..++|.+.+++|+..++..+.
T Consensus       164 ------------------------------~---~-----~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~  205 (265)
T d2voua1         164 ------------------------------V---D-----RMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFT  205 (265)
T ss_dssp             ------------------------------C---S-----CSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------c---c-----ccccccccccccccccccccccccceeeeccHHHHHHHHh
Confidence                                          0   0     1123457788999999999999999999999999999887


Q ss_pred             HHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303          323 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ  373 (409)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~  373 (409)
                      ..                ......++.|+..|.++.+.++..+..+..+.+
T Consensus       206 ~~----------------~~~~~~l~~~~~~r~~~~~~~~~~~r~~g~~~~  240 (265)
T d2voua1         206 KN----------------HDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQ  240 (265)
T ss_dssp             HC----------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hc----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            62                145678899999999998888877776655544

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=6.8e-21  Score=174.16  Aligned_cols=128  Identities=15%  Similarity=0.093  Sum_probs=80.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHH------cCCceEEEeCCCCcCCccc-ceeccccHHHHHHHcCchhHHHhcccc----
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR------LGIRSMVLESSESLRVTGF-AFTVWTNAWKALDAVGIGNSLRQQHQQ----   71 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~------~g~~V~v~E~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~----   71 (409)
                      +.|||+||||||||+++|+.|+|      .|++|+||||+..++.+.+ |..+.+.+++   .+ +++... ...+    
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~---~l-~p~~~~-~~~~~~~~  105 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFE---EL-FPDWKE-KGAPLNTP  105 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHH---HH-CTTHHH-HTCCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHH---HH-ccchhh-hccccccc
Confidence            36899999999999999999998      8999999999999976655 5556664443   33 111111 1111    


Q ss_pred             --ccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe
Q 015303           72 --LRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHF  138 (409)
Q Consensus        72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~  138 (409)
                        .....+.. ....  ....+...........+.+.+..+..++.+.+  .++.+..+..+..+...+++
T Consensus       106 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g  173 (380)
T d2gmha1         106 VTEDRFGILT-EKYR--IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDG  173 (380)
T ss_dssp             CCEEEEEEEC-SSCE--EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTS
T ss_pred             eecceEEEee-cccc--ccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCC
Confidence              11111111 1111  11111111112234556788999999998876  36788888888887765543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=3.9e-17  Score=141.05  Aligned_cols=155  Identities=16%  Similarity=0.155  Sum_probs=87.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc----cc--eeccccHHHHH-HHcCchhHHHh----cccc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG----FA--FTVWTNAWKAL-DAVGIGNSLRQ----QHQQ   71 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~----~~--~~~~~~~~~~l-~~~gl~~~~~~----~~~~   71 (409)
                      ++|||+||||||+|+++|+.|+++|++|+|+||++.+....    .+  ..........+ ........+..    ....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            36999999999999999999999999999999987653211    00  00001111111 11111000000    0000


Q ss_pred             ccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEecCCcE
Q 015303           72 LRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLADGTI  148 (409)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~  148 (409)
                      .....+... .+..   ......+   ...........+.+.|.+++  .+++++++++|++|..+++.+ .|.+.++++
T Consensus        81 ~~~~~~~~~-~g~~---~~~~~~~---~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~  153 (251)
T d2i0za1          81 EDIITFFEN-LGVK---LKEEDHG---RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEV  153 (251)
T ss_dssp             HHHHHHHHH-TTCC---EEECGGG---EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCE
T ss_pred             HHHHHHHHh-cCCc---ccccccc---ceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCe
Confidence            000000000 0000   0000000   00001123345566665544  378999999999999888775 478889999


Q ss_pred             EeccEEEecCCCchHH
Q 015303          149 LKTKVLIGCDGVNSIV  164 (409)
Q Consensus       149 ~~ad~vV~AdG~~S~v  164 (409)
                      ++||.||+|||..|..
T Consensus       154 i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         154 LETNHVVIAVGGKSVP  169 (251)
T ss_dssp             EECSCEEECCCCSSSG
T ss_pred             EecCeEEEccCCcccc
Confidence            9999999999998843

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.67  E-value=1.7e-16  Score=139.02  Aligned_cols=69  Identities=20%  Similarity=0.226  Sum_probs=56.9

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCCCCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGFKNP  173 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~~~  173 (409)
                      .++...+...|.+.+  .+++++++++|+.|+.+++.+.|++.+| +++||.||.|+|.+|. +.+.+|+..+
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~  218 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNA  218 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCC
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCcc
Confidence            567778888887755  4789999999999998888899999887 5899999999999986 4666776544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=1.6e-15  Score=130.83  Aligned_cols=144  Identities=21%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----ccc-eecc-------------c-cHHHHHHHcCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----GFA-FTVW-------------T-NAWKALDAVGI   61 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~-~~~~-------------~-~~~~~l~~~gl   61 (409)
                      |++++||+||||||||+++|+.|+++|++|+|+||.+.+..+    +.+ ..+.             + .....+.....
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~   80 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence            778899999999999999999999999999999999875321    000 0000             0 01122222211


Q ss_pred             hhHHHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE
Q 015303           62 GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK  139 (409)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v  139 (409)
                      .+.+...  ...+..+.....+                .....-....+.+.|.+++  .+++|+++++|++++..++..
T Consensus        81 ~~~~~~~--~~~g~~~~~~~~~----------------~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~  142 (253)
T d2gqfa1          81 WDFISLV--AEQGITYHEKELG----------------QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDE  142 (253)
T ss_dssp             HHHHHHH--HHTTCCEEECSTT----------------EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCS
T ss_pred             cchhhhh--hhcCcceeeecCC----------------ccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCc
Confidence            1111000  0001111111000                0000112345555555544  278999999999998876542


Q ss_pred             ---EEEecCCcEEeccEEEecCCCch
Q 015303          140 ---LLHLADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       140 ---~v~~~~g~~~~ad~vV~AdG~~S  162 (409)
                         .+...++.+++||.||+|+|..|
T Consensus       143 ~v~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         143 KVRFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             SCCEEEEETTEEEEESEEEECCCCSS
T ss_pred             eeEEEEecCCEEEEeCEEEEcCCccc
Confidence               23345667899999999999776

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.62  E-value=1.3e-15  Score=133.68  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=53.8

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH-HhhhCC
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV-AKWLGF  170 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~  170 (409)
                      .++...+...|.+.+  .+++++++++|++|+.++++|.|++.+|+ ++||.||.|+|.+|.- .+.++.
T Consensus       146 ~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g~-i~a~~VViAaG~~s~~l~~~lg~  214 (281)
T d2gf3a1         146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWNSKLLSKLNL  214 (281)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEE-EEEEEEEECCGGGHHHHGGGGTE
T ss_pred             cccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCcE-EEcCEEEECCCCcchhhHHhcCC
Confidence            466677888877655  47999999999999999999999998885 9999999999998863 333443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.50  E-value=2.3e-14  Score=128.83  Aligned_cols=157  Identities=14%  Similarity=0.085  Sum_probs=87.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCC-------cccceeccccHHHHHHHcCchhHHHhcccc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRV-------TGFAFTVWTNAWKALDAVGIGNSLRQQHQQ   71 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~-------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~   71 (409)
                      |....+|+||||||+||++|..|++.|  .+|+|+||++.+..       .+........  ..  ..............
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~   76 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST--NP--ILTTEPIVGPAALP   76 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBC--CT--TCCCCCBCCSSSCC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccc--cc--cccccccccccccc
Confidence            444468999999999999999998876  59999999986521       1111100000  00  00000000000000


Q ss_pred             ccceeeee-cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCc-
Q 015303           72 LRSIVATP-TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGT-  147 (409)
Q Consensus        72 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~-  147 (409)
                      ........ ...........+...... ......+.|..+.++|...+.  +..|+++++|++++.++++|.|++.+++ 
T Consensus        77 ~~~s~~y~~l~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~  155 (335)
T d2gv8a1          77 VYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA  155 (335)
T ss_dssp             BCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred             ccccccchhhhcCCcHhhhhhhhhcCC-cccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCC
Confidence            00000000 000000000111111110 111224678888888877653  4579999999999999999999887542 


Q ss_pred             -----EEeccEEEecCCCch
Q 015303          148 -----ILKTKVLIGCDGVNS  162 (409)
Q Consensus       148 -----~~~ad~vV~AdG~~S  162 (409)
                           +..||+||.|+|..|
T Consensus       156 ~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         156 GSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             TCCEEEEEESEEEECCCSSS
T ss_pred             CCeEEEEEeeEEEEcccccc
Confidence                 456999999999887

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.49  E-value=4.9e-14  Score=123.58  Aligned_cols=132  Identities=18%  Similarity=0.160  Sum_probs=84.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+|||||++||++|+.|.+.|++|+|+||.+.+..                   .|..   .  ...+........
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG-------------------tW~~---n--~ypg~~~d~~~~   61 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG-------------------VWYW---N--RYPGARCDIESI   61 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT-------------------HHHH---C--CCTTCBCSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc-------------------cccc---C--CCCCceeccccc
Confidence            458999999999999999999999999999999876321                   1100   0  000000000000


Q ss_pred             CCcc--cccccccccccCCccceeccHHHHHHHHHhhCC--Cc--eEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEE
Q 015303           83 GKPS--SERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SG--TIRYSSQVVSIEESG--HFKLLHLADGTILKTKVL  154 (409)
Q Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~v  154 (409)
                      ....  ....+...    ........+..+.++|.+.+.  +.  .|+++++|+++..++  +.|.|++.++.+++||+|
T Consensus        62 ~~~~s~~~~~~~~~----~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~  137 (298)
T d1w4xa1          62 EYCYSFSEEVLQEW----NWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYL  137 (298)
T ss_dssp             TSSCCSCHHHHHHC----CCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEE
T ss_pred             cccccccccccCCC----CCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceE
Confidence            0000  00000000    111123456677777665442  33  699999999998654  569999999999999999


Q ss_pred             EecCCCch
Q 015303          155 IGCDGVNS  162 (409)
Q Consensus       155 V~AdG~~S  162 (409)
                      |.|+|..|
T Consensus       138 i~atG~ls  145 (298)
T d1w4xa1         138 IMASGQLS  145 (298)
T ss_dssp             EECCCSCC
T ss_pred             EEeecccc
Confidence            99999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.49  E-value=1.6e-13  Score=121.47  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=55.2

Q ss_pred             eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH-HhhhCCCCCc
Q 015303          104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFKNPA  174 (409)
Q Consensus       104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~~  174 (409)
                      .++...+...|.+.+  .+++++++++|+++..+++++. |.+.+| +++||.||.|+|.+|.- .+.++...|.
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~lP~  217 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPP  217 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCT
T ss_pred             ccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcccc
Confidence            567778888777655  4899999999999999999865 677666 59999999999999873 4555665543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.42  E-value=1.5e-13  Score=120.59  Aligned_cols=41  Identities=10%  Similarity=0.096  Sum_probs=36.6

Q ss_pred             CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303          120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +..+..++.+..+...++.+.|++.+|+.+++|.++.+...
T Consensus       224 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             ccccccccccccccccCccEEEEECCCCEEEcCEEEeecCH
Confidence            46899999999999999999999999999999999987663

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.3e-12  Score=112.88  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+.+|||||||||++|+++|+.|+++|++|+|+|+++.+
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            888999999999999999999999999999999998754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.35  E-value=6e-12  Score=111.33  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||+|||||++|+++|+.|+++|.+|+|+||.+..
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3589999999999999999999999999999998764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.28  E-value=1.9e-11  Score=108.79  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=33.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||+|++||++|+.|+++|++|+|+||.+..
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~   58 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP   58 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            579999999999999999999999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.6e-12  Score=115.52  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             HHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303          110 LLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus       110 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +.+.+.+.. +++|+++++|+.|..+++++.|++.||++++||.||.|.+.
T Consensus       212 ~~~~l~~~~-g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         212 VSERIMDLL-GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHH-GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHHHHHHHc-CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            334444332 68999999999999999999999999999999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=7.3e-11  Score=87.52  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=74.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-+.                  +                 +.    
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~------------------~-----------------d~----   62 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------F-----------------DP----   62 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S-----------------CH----
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh------------------c-----------------ch----
Confidence            57999999999999999999999999999998652110                  0                 00    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                                          --...+.+.|.++  +++++++++|+.+...++ .+.+++++|+++.+|.||.|+|
T Consensus        63 --------------------~~~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          63 --------------------MISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             --------------------HHHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             --------------------hhHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                                0013445555554  899999999999987764 5889999999999999999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.26  E-value=1.3e-11  Score=109.43  Aligned_cols=35  Identities=37%  Similarity=0.605  Sum_probs=33.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +||+||||||+||++|+.|+++|++|+|+|+++.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            48999999999999999999999999999998765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.21  E-value=6.4e-11  Score=104.94  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +.+||+|||+|++||++|+.|+++|.+|+|+||.+..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=9.6e-11  Score=96.49  Aligned_cols=121  Identities=15%  Similarity=0.073  Sum_probs=74.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC-cCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES-LRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .|||+||||||||+.+|++++|.|.+++||+++.. .....|...........+.     .++             + ..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~-----rei-------------d-~k   62 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLE-----RAY-------------D-PK   62 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHH-----HHC-------------C-TT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCccee-----eee-------------e-cc
Confidence            59999999999999999999999999999998632 1111111000000000000     000             0 00


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCc
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                                      .+. ..-.|..+.+.+. ..++.+++.+ +|+++..+++. ..|.+.+|.+++|+.||.|+|-+
T Consensus        63 ----------------G~a-v~a~raQ~k~~l~-~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          63 ----------------DER-VWAFHARAKYLLE-GLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             ----------------CCC-HHHHHHHHHHHHH-TCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             ----------------chh-hhhHHHHHHHHHh-hhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence                            000 0112344444443 4457787765 57777777776 45889999999999999999965


Q ss_pred             h
Q 015303          162 S  162 (409)
Q Consensus       162 S  162 (409)
                      .
T Consensus       124 L  124 (230)
T d2cula1         124 L  124 (230)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=5.5e-10  Score=99.38  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=34.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||+|||+|+|||++|+.++++|.+|+|+||.+..
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            3689999999999999999999999999999998754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.15  E-value=7.5e-11  Score=105.46  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .|||+|||||+|||++|+.|+++|.+|+|+||.+..
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            479999999999999999999999999999998654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=6.4e-10  Score=84.42  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=73.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-...                 +.+                    
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-----------------~~~--------------------   77 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------TAP--------------------   77 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------SCH--------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc-----------------cch--------------------
Confidence            4589999999999999999999999999999887632110                 000                    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC--e-EEEEecCCcEEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH--F-KLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~--~-v~v~~~~g~~~~ad~vV~AdG  159 (409)
                                           .-...+.+.+.++  +++++++++|+.++...+  . ..+.+++|+++.||+||.|.|
T Consensus        78 ---------------------~~~~~~~~~~~~~--GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          78 ---------------------PVSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ---------------------HHHHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ---------------------hhhhhhhhccccc--ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                                 0012334455444  899999999999987643  3 347899999999999999988

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.14  E-value=7.3e-11  Score=105.93  Aligned_cols=36  Identities=44%  Similarity=0.593  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            469999999999999999999999999999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.14  E-value=6.5e-10  Score=82.64  Aligned_cols=95  Identities=23%  Similarity=0.268  Sum_probs=74.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+++|+.+.+-+.                  +..+                   
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~------------------~d~e-------------------   64 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------VDEQ-------------------   64 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc------------------ccch-------------------
Confidence            358999999999999999999999999999988652111                  0000                   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG  159 (409)
                                           + +..+.+.|.+.  +++++.+++|++++.+++++++++.++   +++.||.|+.|.|
T Consensus        65 ---------------------i-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          65 ---------------------V-AKEAQKILTKQ--GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ---------------------h-HHHHHHHHHhc--CceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                                 0 12344555443  789999999999999999888888765   4789999999988

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=3.3e-10  Score=98.24  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcccc-------eeccccHHHHHHHcCchhHHHhccccccce
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTGFA-------FTVWTNAWKALDAVGIGNSLRQQHQQLRSI   75 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (409)
                      ++||+||||||+||++|+.|+++ |++|+|+|+++.+....+.       ..+.......++.+++              
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~--------------   98 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGV--------------   98 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTC--------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCC--------------
Confidence            58999999999999999999984 9999999999765432211       1111112222222211              


Q ss_pred             eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEe----------
Q 015303           76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHL----------  143 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~----------  143 (409)
                      .+..              ..   ........+..+..++...+  .+..+..++++..+...++.+.-..          
T Consensus        99 ~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~  161 (278)
T d1rp0a1          99 AYDE--------------QD---TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNH  161 (278)
T ss_dssp             CCEE--------------CS---SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCT
T ss_pred             ceec--------------CC---ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeee
Confidence            0000              00   00111223444555554433  3567888888888887776543211          


Q ss_pred             -----cCCcEEeccEEEecCCCch
Q 015303          144 -----ADGTILKTKVLIGCDGVNS  162 (409)
Q Consensus       144 -----~~g~~~~ad~vV~AdG~~S  162 (409)
                           .++.+++++++|+|+|...
T Consensus       162 ~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         162 HTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             TTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cccccccceeeccceEEECcCCCc
Confidence                 1224689999999999654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.4e-10  Score=99.03  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|+|||++|+.+++.  |.+|+|+||....
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            58999999999999999999986  6799999998643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.11  E-value=8e-10  Score=82.25  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=68.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|+++|.+|+|+|+.+.+-...                                        
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------   69 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA----------------------------------------   69 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc----------------------------------------
Confidence            4689999999999999999999999999999886521100                                        


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  159 (409)
                             ++       .    -.+..+.+.|.+.  +++++++++|+.+..  +  .++++||+++.||+||.|.|
T Consensus        70 -------~~-------~----~~~~~~~~~l~~~--GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          70 -------AP-------A----TLADFVARYHAAQ--GVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             -------SC-------H----HHHHHHHHHHHTT--TCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             -------CC-------H----HHHHHHHHHHHHC--CcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence                   00       0    0122334445433  899999999988753  3  46788999999999999988

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.4e-10  Score=85.93  Aligned_cols=96  Identities=21%  Similarity=0.270  Sum_probs=73.5

Q ss_pred             ccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+|+|||||++|+-+|..|++    .|.+|+++|+.+.+-...                 +.++                
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~-----------------~~~~----------------   84 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------LPEY----------------   84 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------SCHH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc-----------------CCHH----------------
Confidence            479999999999999999864    589999999875521100                 0000                


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              + ...+.+.|.+  .+++++++++|+.++.+++.+.+++++|+++.||+||.|.|.
T Consensus        85 ------------------------~-~~~~~~~l~~--~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          85 ------------------------L-SNWTMEKVRR--EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             ------------------------H-HHHHHHHHHT--TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ------------------------H-HHHHHHHHHh--CCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence                                    0 1233444443  389999999999999999999999999999999999999993

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.06  E-value=2.1e-09  Score=79.70  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=71.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||++|+-+|..|++.   |.+|+++|+.+.+-+.                  +..+                 
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~------------------~d~~-----------------   63 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------FDSE-----------------   63 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------SCHH-----------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc------------------ccch-----------------
Confidence            5899999999999999887664   8899999987542110                  0000                 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCCcEEeccEEEecCCC
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              -+..+.+.|.+.  +++++++++|+.|+..++ ...+++++|+++.||+||.|+|+
T Consensus        64 ------------------------~~~~~~~~l~~~--GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          64 ------------------------LRKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             ------------------------HHHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------------hhHHHHHHHhhC--cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                                    023444555544  899999999999987654 46789999999999999999994

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.02  E-value=5.5e-10  Score=95.89  Aligned_cols=36  Identities=31%  Similarity=0.525  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+.+|+|||||++||++|+.|+++|++|+|+||+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999999753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.01  E-value=2.5e-09  Score=79.26  Aligned_cols=92  Identities=13%  Similarity=0.241  Sum_probs=70.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..                    
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~------------------~d~--------------------   63 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------FEK--------------------   63 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCH--------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc------------------ccc--------------------
Confidence            358999999999999999999999999999998763110                  000                    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-CC--cEEeccEEEe
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-DG--TILKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g--~~~~ad~vV~  156 (409)
                                           --...+.+.|.++  +++++++++|++++..++++.+++. +|  ++++||.|+.
T Consensus        64 ---------------------~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          64 ---------------------QMAAIIKKRLKKK--GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             ---------------------HHHHHHHHHHHHT--TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             ---------------------hhHHHHHHHHHhc--CCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence                                 0013345555543  8999999999999999888777765 33  3689999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.00  E-value=4.5e-09  Score=77.54  Aligned_cols=93  Identities=25%  Similarity=0.327  Sum_probs=71.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..                    
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~------------------~d~--------------------   63 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FDE--------------------   63 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SCH--------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc------------------ccH--------------------
Confidence            358999999999999999999999999999988652110                  000                    


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC-CeEEEEecCCcEEe-ccEEEec
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG-HFKLLHLADGTILK-TKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v~v~~~~g~~~~-ad~vV~A  157 (409)
                                           --+..+.+.|.++  +++++++++|+.++..+ +.+.+++++|++++ +|.||.|
T Consensus        64 ---------------------~~~~~~~~~l~~~--gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 ---------------------SVINVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             ---------------------HHHHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             ---------------------HHHHHHHHHHHhC--CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                                 0123444555543  89999999999998665 45889999998775 6999976

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.99  E-value=2.1e-09  Score=80.29  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-...                                         
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~-----------------------------------------   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY-----------------------------------------   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc-----------------------------------------
Confidence            489999999999999999999999999999986521000                                         


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  157 (409)
                          ++-.             -...+.+.|.++  +++++++++++.++.++ .+...+.+|+++.||+||.|
T Consensus        70 ----~d~~-------------~~~~~~~~l~~~--gv~~~~~~~v~~i~~~~-~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          70 ----LDKE-------------FTDVLTEEMEAN--NITIATGETVERYEGDG-RVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             ----CCHH-------------HHHHHHHHHHTT--TEEEEESCCEEEEECSS-BCCEEEESSCEEECSEEEEC
T ss_pred             ----cchh-------------hHHHHHHHhhcC--CeEEEeCceEEEEEcCC-CEEEEEeCCCEEECCEEEEE
Confidence                0000             012334444433  89999999999998653 45445778889999999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.98  E-value=1.3e-09  Score=80.45  Aligned_cols=93  Identities=23%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||++|+-+|..|++.|.+|+|+|+.+.+-+.                                   ++.   
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-----------------------------------~d~---   62 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------------------------------YDS---   62 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------SCH---
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-----------------------------------ccc---
Confidence            358999999999999999999999999999988652100                                   000   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG  159 (409)
                                          -+ +..+.+.|.+.  +++++++++|++++  ++.......++  .+++||.||.|.|
T Consensus        63 --------------------~~-~~~l~~~l~~~--gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 --------------------EL-TAPVAESLKKL--GIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             --------------------HH-HHHHHHHHHHH--TCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             --------------------hh-HHHHHHHHHhh--cceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                                01 23445555554  79999999999885  34433333333  4799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.96  E-value=5.6e-09  Score=77.92  Aligned_cols=95  Identities=18%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+=+|..|++.|.+|+|+|+.+..-+.                                   ++.    
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-----------------------------------~d~----   67 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----------------------------------ADR----   67 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------SCH----
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-----------------------------------chh----
Confidence            58999999999999999999999999999987552110                                   000    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~vV~AdG~  160 (409)
                                          --...+.+.|.++  +++++.++++++++.+++++.+++.++    ++++||+|+.|.|+
T Consensus        68 --------------------~~~~~l~~~l~~~--gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          68 --------------------DLVKVWQKQNEYR--FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             --------------------HHHHHHHHHHGGG--EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             --------------------hHHHHHHHHHHHc--CcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence                                0013344555443  789999999999999998877776543    37999999999994

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=9.1e-09  Score=76.58  Aligned_cols=93  Identities=23%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+++.+-+.                  +..+                   
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~------------------~d~e-------------------   65 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------MDGE-------------------   65 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------SCHH-------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh------------------hhhh-------------------
Confidence            358999999999999999999999999999988662111                  0000                   


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEecCC-----cEEeccEEEe
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLADG-----TILKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g-----~~~~ad~vV~  156 (409)
                                            -...+.+.|.+.  +++++++++|++++..+++  +.+++.++     ++++||+|+.
T Consensus        66 ----------------------i~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          66 ----------------------VAKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             ----------------------HHHHHHHHHHHT--TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             ----------------------hHHHHHHHHHhc--cceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence                                  013445555543  8999999999999987665  55555543     3789999987


Q ss_pred             c
Q 015303          157 C  157 (409)
Q Consensus       157 A  157 (409)
                      |
T Consensus       122 A  122 (122)
T d1v59a2         122 A  122 (122)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=2.8e-09  Score=86.71  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=71.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+||||||+|+.+|+.|+|.|++|+|+|+.........+.                  +      . .........
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~------------------~------~-~~~~~~~~~   58 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------------L------T-TTTDVENFP   58 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------------G------G-GCSEECCST
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc------------------c------c-cchhhhccc
Confidence            36899999999999999999999999999999875533221100                  0      0 000000000


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                             .+.          ..+....|...+.+.+  -++++..+ +|.+++..++.+.+.+.. ....+|.++.+.|.
T Consensus        59 -------~~~----------~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~  119 (192)
T d1vdca1          59 -------GFP----------EGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGA  119 (192)
T ss_dssp             -------TCT----------TCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCE
T ss_pred             -------ccc----------ccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeee
Confidence                   000          0133445555444432  15677655 688888777777776554 45899999999996

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.89  E-value=2.3e-08  Score=73.79  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI   81 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||+.|+-+|..|++.|   .+|+|+|+.+.+-+.                                   ++. 
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-----------------------------------~d~-   64 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-----------------------------------FDH-   64 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-----------------------------------SCH-
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-----------------------------------cch-
Confidence            58999999999999998887654   579999986542110                                   000 


Q ss_pred             CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC-CeEEEEecCCcEEeccEEEec
Q 015303           82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG-HFKLLHLADGTILKTKVLIGC  157 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v~v~~~~g~~~~ad~vV~A  157 (409)
                                             --...+.+.|.++  ++++++++++++++..+ +.+.+++++|+++.||.||.|
T Consensus        65 -----------------------~~~~~l~~~l~~~--GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 -----------------------TLREELTKQLTAN--GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             -----------------------HHHHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             -----------------------HHHHHHHHHHHhc--CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                                   0023455566554  89999999999998765 458899999999999999976

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.9e-09  Score=93.46  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +.+||+|||+|+|||++|+.+++.| +|+|+||.+..
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            3599999999999999999999888 99999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.7e-08  Score=74.35  Aligned_cols=94  Identities=19%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..                     
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~---------------------   63 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------FDS---------------------   63 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc------------------hhh---------------------
Confidence            58999999999999999999999999999997652110                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CCc------EEeccEEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DGT------ILKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~------~~~ad~vV  155 (409)
                                          --+..+.+.|.+.  +++++.+++++.++..++++.++..   .|.      ...||+|+
T Consensus        64 --------------------~~~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl  121 (125)
T d3grsa2          64 --------------------MISTNCTEELENA--GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL  121 (125)
T ss_dssp             --------------------HHHHHHHHHHHHT--TCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred             --------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEE
Confidence                                0023345555443  8999999999999998888665543   222      46899999


Q ss_pred             ecCC
Q 015303          156 GCDG  159 (409)
Q Consensus       156 ~AdG  159 (409)
                      .|.|
T Consensus       122 ~a~G  125 (125)
T d3grsa2         122 WAIG  125 (125)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.6e-09  Score=86.84  Aligned_cols=131  Identities=14%  Similarity=0.162  Sum_probs=72.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT   80 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+++++|||||++|+.+|..|+++|.  +|+++++.+.+...-.  .++.   .++... ......       ...+.. 
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~--~Ls~---~~~~~~-~~~~~~-------~~~~~~-   68 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP--PLSK---ELWFSD-DPNVTK-------TLRFKQ-   68 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG--GGGT---GGGCC---CTHHH-------HCEEEC-
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc--ccce---eccccc-Cchhhh-------hhhhhh-
Confidence            46899999999999999999999886  5999998766432210  0110   000000 000000       000000 


Q ss_pred             CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..+.. ..+.+...      .. .+.+.. ...+  +-.+++++.+++|++|+.++.  +|++++|+++.||.||.|+|.
T Consensus        69 ~~~~~-~~~~~~~~------~~-~~~~~~-~~~~--~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          69 WNGKE-RSIYFQPP------SF-YVSAQD-LPHI--ENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TTSCE-EESBSSCG------GG-SBCTTT-TTTS--TTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             cccch-hhhhcCCh------hh-hhhhhh-HHHH--HHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            00000 01111100      00 011100 0111  113689999999999977666  577899999999999999994

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=5.3e-10  Score=94.16  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=35.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.++|||+||||||||+++|..|++.|.+|+|||++..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            66789999999999999999999999999999998755

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=7.7e-09  Score=83.93  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS   82 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+||.+|+.|++.|.+|+|||+.......     .                   .   ...+..+    
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~-----~-------------------~---~~~i~~~----   52 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL-----T-------------------T---TTEVENW----   52 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG-----G-------------------G---CSBCCCS----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccc-----c-------------------c---cchhhhh----
Confidence            4579999999999999999999999999999976441100     0                   0   0000000    


Q ss_pred             CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                            ..+.          ..+....+.+.+...+  -++.+.++ +|+.+...++.++++..+. .+.++.+|.|.|.
T Consensus        53 ------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~  114 (190)
T d1trba1          53 ------PGDP----------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNG-EYTCDALIIATGA  114 (190)
T ss_dssp             ------TTCC----------SSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSC-EEEEEEEEECCCE
T ss_pred             ------hccc----------cccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEeee-eEeeeeeeeecce
Confidence                  0000          0122233433333322  14556554 6888888877777776554 5899999999995


Q ss_pred             c
Q 015303          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       115 ~  115 (190)
T d1trba1         115 S  115 (190)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=1.6e-09  Score=90.87  Aligned_cols=38  Identities=21%  Similarity=0.487  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++|||+||||||||+++|+.|++.|++|+|||+...+
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            46899999999999999999999999999999987654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=9.8e-09  Score=76.51  Aligned_cols=89  Identities=18%  Similarity=0.272  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+....      +.+             ++                   
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~------~d~-------------~~-------------------   74 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE-------------EL-------------------   74 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH-------------HH-------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC------CCH-------------HH-------------------
Confidence            4799999999999999999999999999998754210      000             00                   


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                            +..+.+.|.+.  +++++++++++.++.+  .   .+.+++.+++|+||.|.|.
T Consensus        75 ----------------------~~~~~~~l~~~--GV~~~~~~~v~~~~~~--~---v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          75 ----------------------SNMIKDMLEET--GVKFFLNSELLEANEE--G---VLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             ----------------------HHHHHHHHHHT--TEEEECSCCEEEECSS--E---EEETTEEEECSCEEEECCE
T ss_pred             ----------------------HHHHHHHHHHC--CcEEEeCCEEEEEeCC--E---EEeCCCEEECCEEEEEEEe
Confidence                                  12234445443  8899999999887543  2   2456778999999999994

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.80  E-value=3.4e-08  Score=73.48  Aligned_cols=94  Identities=20%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ..|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+.                  +...                    
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~------------------~d~~--------------------   64 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------KDNE--------------------   64 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------CSHH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc------------------cccc--------------------
Confidence            58999999999999999999999999999987542211                  0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EE-E---EecCCcEEeccEEEecCC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KL-L---HLADGTILKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~-v---~~~~g~~~~ad~vV~AdG  159 (409)
                                           .+..+.+.|.+.  +++++++++++.++.++++ +. +   ...++++++||+||.|.|
T Consensus        65 ---------------------~~~~~~~~l~~~--gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          65 ---------------------TRAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ---------------------hhhhhhhhhhcc--ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                                 023344455443  7899999999999987653 21 1   223446799999999988

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.80  E-value=2e-08  Score=74.77  Aligned_cols=93  Identities=25%  Similarity=0.383  Sum_probs=69.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||..|+=+|..|++.|.+|+|+|+.+.+-+.                  +.+                     
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~------------------~d~---------------------   66 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------MDA---------------------   66 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch------------------hhh---------------------
Confidence            58999999999999999999999999999988663211                  000                     


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CCc--EEeccEEEecC
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DGT--ILKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                          --+..+.+.|.+.  ++++++++++++++..++++++++.   +|+  +++||+|+.|.
T Consensus        67 --------------------~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          67 --------------------EIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             --------------------HHHHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             --------------------cchhhhhhhhhcc--cceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                                0023455666554  7999999999999988877665543   333  58999998873

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.1e-09  Score=85.45  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ...+|+|||||||||++|+.|+++|++|+|+|+.+.+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            3579999999999999999999999999999999774

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=4e-08  Score=87.99  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|+|||++|+.|++    +|.+|+|+||.+..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            5899999999999999999986    69999999998654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.71  E-value=4.9e-09  Score=87.34  Aligned_cols=37  Identities=27%  Similarity=0.571  Sum_probs=34.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|||+||||||||+++|..+++.|.+|+|||++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            5799999999999999999999999999999987653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.69  E-value=5.3e-09  Score=87.65  Aligned_cols=35  Identities=20%  Similarity=0.462  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|||+||||||||+++|..|++.|++|+|||+.+.
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            69999999999999999999999999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=1.8e-07  Score=69.29  Aligned_cols=93  Identities=15%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK   84 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+-+|..|++.|.+|+|++++...+.                   +..+                    
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~-------------------~D~~--------------------   61 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FDQD--------------------   61 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT-------------------SCHH--------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhcc-------------------CCHH--------------------
Confidence            5899999999999999999999999999996522100                   0000                    


Q ss_pred             cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC----CeEEEEecCC---c--EEeccEEE
Q 015303           85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG----HFKLLHLADG---T--ILKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~----~~v~v~~~~g---~--~~~ad~vV  155 (409)
                                           -...+.+.|.++  ++++++++.|+.++..+    ..+.+++.++   +  ..++|.|+
T Consensus        62 ---------------------~~~~l~~~l~~~--Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl  118 (122)
T d1h6va2          62 ---------------------MANKIGEHMEEH--GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVL  118 (122)
T ss_dssp             ---------------------HHHHHHHHHHHT--TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEE
T ss_pred             ---------------------HHHHHHHHHHHC--CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEE
Confidence                                 013445555554  89999999999997643    3456655543   2  45799999


Q ss_pred             ecCC
Q 015303          156 GCDG  159 (409)
Q Consensus       156 ~AdG  159 (409)
                      .|.|
T Consensus       119 ~AiG  122 (122)
T d1h6va2         119 LAVG  122 (122)
T ss_dssp             CCCC
T ss_pred             EEeC
Confidence            9987

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=5.3e-09  Score=86.86  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+++|..|++.|.+|+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            46999999999999999999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.67  E-value=9.6e-08  Score=77.79  Aligned_cols=107  Identities=11%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+|||||++|+.+|..|++.+  .+|+++|+++.+....++.       ..         +.....  ..       . 
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~-------~~---------~l~~~~--~~-------~-   55 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGM-------QL---------YLEGKV--KD-------V-   55 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGH-------HH---------HHTTSS--CC-------G-
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCc-------ch---------hhcccc--cc-------h-
Confidence            7999999999999999999974  5799999987643222111       10         000000  00       0 


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV~AdG~  160 (409)
                         ..+.             ....    +.|.+  .+++++.+++|++++.+++.+++.. .+|+  ++.+|.+|.|.|.
T Consensus        56 ---~~~~-------------~~~~----~~l~~--~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          56 ---NSVR-------------YMTG----EKMES--RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             ---GGSB-------------SCCH----HHHHH--TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ---HHHH-------------HhhH----HHHHH--CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence               0000             0111    22322  2899999999999998888877763 4444  5789999999995

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.4e-09  Score=90.34  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=33.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +||+||||||+||++|..|++.|++|+|+|+++.+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            79999999999999999999999999999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.63  E-value=2e-08  Score=88.55  Aligned_cols=35  Identities=26%  Similarity=0.534  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||||||||++|+.|+++|++|+|+|+++.+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            47999999999999999999999999999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=8.6e-09  Score=86.70  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=33.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .|||+||||||||+++|+.+++.|++|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            599999999999999999999999999999987653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.62  E-value=1.3e-08  Score=91.93  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |..+|||||||+|++|+++|..|++.|++|+|+|++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            788999999999999999999999999999999997643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.62  E-value=2.1e-09  Score=91.05  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES   35 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|+|||||++||++|+.|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            799999999999999999999988766665

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.1e-08  Score=82.42  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .|||+||||||+|+.+|..+++.|.+|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            389999999999999999999999999999975

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.7e-08  Score=90.82  Aligned_cols=37  Identities=24%  Similarity=0.606  Sum_probs=34.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++.+|+|||||++||+||+.|+++|++|+|+|+++.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4578999999999999999999999999999998865

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.58  E-value=1.8e-08  Score=83.80  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|||+||||||+|+++|..+++.|.+|+|+|+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            369999999999999999999999999999999754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.57  E-value=1.7e-08  Score=83.92  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+.+|..+++.|.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46999999999999999999999999999999874

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.57  E-value=1e-07  Score=81.34  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||++||||||+|+.+|..|++.|.+|+|+|+.+..
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            4799999999999999999999999999999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=1.6e-08  Score=85.16  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-------CceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-------IRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-------~~V~v~E~~~~   38 (409)
                      +++|+|||||||||+||+.|+++|       ++|+|+|+.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            579999999999999999999988       57999999876

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=3.4e-08  Score=80.34  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      ..+|+||||||+||++|..|+++|+ +|+|+||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            4689999999999999999999998 59999998653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.9e-08  Score=82.48  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|||+||||||+|+++|..+++.|.+|+|+|+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            369999999999999999999999999999998643

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.53  E-value=2.8e-07  Score=73.88  Aligned_cols=105  Identities=17%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG   83 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||++|+-+|..|++.|.+|.|++..+..... .  ....          +...+....            ..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~-~--~~~~----------l~~~~~~~~------------~~   57 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-Y--DRPP----------LSKDFMAHG------------DA   57 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-B--CSGG----------GGTTHHHHC------------CG
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc-h--hhHH----------Hhhhhhhhh------------hh
Confidence            357999999999999999999999988887765442211 0  0000          000010000            00


Q ss_pred             CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      .   ....                     .+ ....+++++.+++++.+..+..  .+++.+|+++.+|+||.|.|.
T Consensus        58 ~---~~~~---------------------~~-~~~~~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          58 E---KIRL---------------------DC-KRAPEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             G---GSBC---------------------CG-GGSTTCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred             h---hHHH---------------------HH-hhcCCeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEE
Confidence            0   0000                     00 0123678999999998876555  567889999999999999994

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.51  E-value=4.2e-08  Score=86.02  Aligned_cols=37  Identities=24%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +.+|+|||||++||++|..|++.|++|+|+|+++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4589999999999999999999999999999998653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.51  E-value=4e-07  Score=71.70  Aligned_cols=102  Identities=15%  Similarity=0.161  Sum_probs=63.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKP   85 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+.....      .         +...+ .......            
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~------~---------~~~~~-~~~~~~~------------   52 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP------M---------LSHYI-AGFIPRN------------   52 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST------T---------HHHHH-TTSSCGG------------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc------c---------hhhhh-hhhhhhh------------
Confidence            79999999999999999965 779999998765432210      0         00000 0000000            


Q ss_pred             ccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303           86 SSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV  160 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  160 (409)
                        .+  .      .     ..    .+.+.+.  +++++.+++++.++....   +.+.++.++.+|++|.|.|.
T Consensus        53 --~~--~------~-----~~----~~~~~~~--~v~~~~~~~v~~i~~~~~---~~~~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          53 --RL--F------P-----YS----LDWYRKR--GIEIRLAEEAKLIDRGRK---VVITEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             --GG--C------S-----SC----HHHHHHH--TEEEECSCCEEEEETTTT---EEEESSCEEECSEEEECCCE
T ss_pred             --hh--h------H-----HH----HHHHHhc--cceeeeeccccccccccc---cccccccccccceeEEEEEe
Confidence              00  0      0     00    1222222  688999999998864432   34556677999999999994

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.46  E-value=7.7e-08  Score=80.55  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ...+|+||||||||+++|..|+++|++|+|+|+.+.+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            3479999999999999999999999999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.43  E-value=8.2e-08  Score=81.79  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ||++||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=2.1e-07  Score=77.75  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~   37 (409)
                      .+|+||||||||+++|+.+++.|   .+|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            48999999999999999998866   5799999864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.39  E-value=8.3e-08  Score=80.74  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +++|||+||||||||+++|+.+++.|. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            468999999999999999999999986 5999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.37  E-value=1.4e-07  Score=79.00  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            2 ESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ++.|||+||||||||+++|..+++.|. +|+|+|+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            356999999999999999999999886 588999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.37  E-value=1.3e-07  Score=78.96  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      .+|+|||||||||+||..|++.  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            3899999999999999999876  6799999998764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.1e-07  Score=81.48  Aligned_cols=37  Identities=32%  Similarity=0.551  Sum_probs=33.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLR   40 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~   40 (409)
                      ++||+||||||+|+++|+.|+++  |++|+|+|+++.+.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            57999999999999999999975  99999999988754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.24  E-value=1.6e-06  Score=69.06  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      .+|+|||||++|+.+|..|++.+  .+|+|+|+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            48999999999999999999987  47999998865

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.23  E-value=3.5e-07  Score=82.17  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||||||+|++|+.+|..|+++|++|+|+|++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3689999999999999999999999999999986

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.19  E-value=5.4e-07  Score=80.48  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||+||||+|++|+.+|..|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            6999999999999999999999999999999984

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.13  E-value=1e-06  Score=78.93  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .||||||+|++|+.+|..|+++|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            599999999999999999999999999999974

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.09  E-value=1.2e-06  Score=79.09  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .||+||||||++|+.+|..|++.| ++|+|||++..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999988 79999999863

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.06  E-value=2.6e-05  Score=61.95  Aligned_cols=36  Identities=28%  Similarity=0.524  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .-+|+|||||++|+-+|..|++.|.+|+|++..+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999999877653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.01  E-value=1.8e-06  Score=77.81  Aligned_cols=34  Identities=38%  Similarity=0.559  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-CceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      .||+||||||.+|+.+|..|++.+ ++|+|+|++.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            599999999999999999999876 8999999985

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.98  E-value=1.2e-06  Score=77.94  Aligned_cols=35  Identities=31%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .||+||||+|+||+.+|..|++. ++|+|||++..+
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            48999999999999999999986 999999999743

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.78  E-value=6.8e-05  Score=57.70  Aligned_cols=33  Identities=12%  Similarity=0.113  Sum_probs=29.4

Q ss_pred             cEEEE--CCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIV--GAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~Ii--G~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|+  |||..|+-+|..|+++|.+|+|+|+.+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            55665  9999999999999999999999998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00011  Score=56.92  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCC
Q 015303          107 RKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDG  159 (409)
Q Consensus       107 r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG  159 (409)
                      +......+...  ++++..++++..++  ++++.+...+.+ ++.||.||.|.|
T Consensus       111 ~~~~~~~~~~~--gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         111 GWIHRTTLLSR--GVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHHHT--TCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             hHHHHHHHhhC--CeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence            44444444433  78999999999885  455555544333 589999999999

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=3.9e-05  Score=53.23  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|+|.|.+|+++|..|+++|.+|+++|.+..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            357999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.49  E-value=3.9e-05  Score=60.89  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|+++|..|+++|++|.++++++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4799999999999999999999999999998743

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=9.1e-05  Score=55.12  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            799999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.30  E-value=8.8e-05  Score=58.46  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|||+|-.|..+|..|++.|++|+|+||...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5899999999999999999999999999999854

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00012  Score=56.81  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|||+|-.|.++|..|++.|++|++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            3799999999999999999999999999999865

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00012  Score=58.28  Aligned_cols=34  Identities=15%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|...|..++++|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4999999999999999999999999999998864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.01  E-value=0.00034  Score=52.67  Aligned_cols=38  Identities=21%  Similarity=0.484  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      |.++.+|.|||+|-.|.++|+.|+.+|+  ++.|+|.+..
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            5667899999999999999999999985  7999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.96  E-value=0.00019  Score=56.91  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+...+|+|||||--|.++|..|++.|++|.++.+++
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3444589999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.00038  Score=51.75  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999998864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.92  E-value=0.00054  Score=52.09  Aligned_cols=38  Identities=11%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            1 MESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |.++.+|.|||+|-.|.++|+.|+..++ +++|+|.++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            4567899999999999999999999886 7999997754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.88  E-value=0.0003  Score=55.56  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|...|..++++|++|+++|+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.012  Score=42.64  Aligned_cols=35  Identities=11%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||-+++-.|..|++..-+|+++-|++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            45899999999999999999999999999987754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.73  E-value=0.00061  Score=54.57  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||.|-.|+.+|..|++.|++|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.71  E-value=0.00095  Score=50.70  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|+|||+|.+|+.++..+.+.|-+|+++|.+..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            57999999999999999999999999999998643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.71  E-value=0.00076  Score=52.03  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||.|..|.++|..|++.|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.64  E-value=0.0012  Score=50.98  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+.+|....+.|-.|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            56899999999999999999999999999998865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.48  E-value=0.0012  Score=51.77  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ++|.|||+|.-|.++|..|++.|.+|.|+.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            38999999999999999999999999999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.0022  Score=45.82  Aligned_cols=35  Identities=26%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||||.+|..-|..|.+.|.+|++++....
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            46899999999999999999999999999986543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.21  E-value=0.003  Score=47.71  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLR   40 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~   40 (409)
                      -+|+|||||-+|+=+|..|.+.|. +|+++.|++...
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~   82 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVN   82 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhh
Confidence            479999999999999999999986 488999886644

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0024  Score=48.28  Aligned_cols=34  Identities=29%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+||| .|..|..+|..|.+.|++|.++|+...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            4899999 699999999999999999999998754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.003  Score=56.84  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccccee
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT   47 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~   47 (409)
                      ..|||+|+|-|+.=+.+|.+|++.|.+|+-+|+++.-........
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            469999999999999999999999999999999988544433333

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.13  E-value=0.0086  Score=48.53  Aligned_cols=34  Identities=15%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|-+|.-+|..|++.+.+++++=+...
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            5899999999999999999999998888776653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0018  Score=48.98  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||||..|+.-|..|.+.|.+|+|+.+.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999999754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.99  E-value=0.0033  Score=47.16  Aligned_cols=35  Identities=29%  Similarity=0.579  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|+.|+..|+  ++.|+|..+.
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            4689999999999999999999886  7999997643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.97  E-value=0.0044  Score=46.96  Aligned_cols=34  Identities=18%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +.+|.|||+|-.|.++|+.|+..|+  ++.|+|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            5699999999999999999999997  799999874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.97  E-value=0.0026  Score=50.38  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             cEEEE-CCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIV-GAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~Ii-G~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|| |+|-.|.++|..|++.|++|+|..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            69999 6699999999999999999999998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.94  E-value=0.0043  Score=46.18  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|+.|+..++ ++.++|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            489999999999999999999886 8999997654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.88  E-value=0.0031  Score=48.17  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||-|..|...|..|+++|++|.++|+.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            699999999999999999999999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.88  E-value=0.0035  Score=48.37  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            4799999999999999999999999999997754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0046  Score=46.83  Aligned_cols=34  Identities=18%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +.+|.|||+|-.|.++|+.|...|+  ++.|+|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999987  799999764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.83  E-value=0.0051  Score=47.73  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||-|..|..+|..|.++|++|.++||.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.79  E-value=0.0051  Score=47.80  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||-|..|..+|..|.+.|++|.++|+.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4799999999999999999999999999998753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.74  E-value=0.0067  Score=45.44  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|.|||+|-.|.++|+.|.+.++ ++.|+|.+..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999999999886 7999998654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0043  Score=47.90  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|. +|+++|+++.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            479999999999999999999998 7999997754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.70  E-value=0.0066  Score=45.15  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|.|||+|-.|.++|+.|+..|+  ++.|+|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            79999999999999999999985  8999997764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.66  E-value=0.0066  Score=45.09  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .+|.|||+|-.|.++|+.|+.+|+  ++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999987  799999764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0074  Score=42.58  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|.|+|||--|-++|....+.|++|.++|.++..
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            57999999999999999999999999999988653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.63  E-value=0.0063  Score=46.60  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|.+|.++|+++.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            4799999999999999999999999999997743

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.63  E-value=0.0054  Score=45.70  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|.|||| |-.|.++|+.|+.+|+  ++.|+|....
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            7999996 9999999999999995  8999998743

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0062  Score=46.81  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4799999999999999988889999999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.56  E-value=0.0075  Score=44.77  Aligned_cols=34  Identities=15%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|+.|...++  ++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            489999999999999999999987  7999997764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.53  E-value=0.0067  Score=46.28  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||-|..|...|..|.++|++|.++|++..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            699999999999999999999999999998754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.41  E-value=0.0077  Score=44.67  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|.++|+.|+.+|+  ++.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            389999999999999999999885  6999997643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.39  E-value=0.0079  Score=44.82  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|+.|..+|+  +++|+|.+..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            489999999999999999999885  7999997643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.37  E-value=0.0075  Score=45.44  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|-.|..+|..|+++|++|+++++...
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            799999999999999999999999999987654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.28  E-value=0.0051  Score=48.65  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|||.|-.|+.+|..|+ .|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            7999999999999999887 5999999997754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.28  E-value=0.0099  Score=45.68  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|.|||+|..|.++|..|.+.|+  +|..+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            69999999999999999999996  5777887643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.011  Score=44.61  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|+|.|..|..++..|.+.|.+|+++|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            599999999999999999999999999998763

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.24  E-value=0.0089  Score=44.41  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||| |-.|.++|+.|+..|+  ++.|+|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999999986  699999753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.01  Score=43.94  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|.|||+|-.|.++|+.|+.+++  ++.|+|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            79999999999999999999885  799999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.17  E-value=0.015  Score=40.71  Aligned_cols=35  Identities=11%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++-+++.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            35899999999999999999999888888776654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.0079  Score=46.84  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|+.+...+...|. +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            479999999999999999999997 7999998644

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.01  Score=38.52  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .|.|+|||--|-+++.+..+.|++|.++|..+..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            7999999999999999999999999999987653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.013  Score=42.35  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||.+.+-.|..|++..-+|+|+-|++.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            46899999999999999999999889999998865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.014  Score=46.31  Aligned_cols=37  Identities=38%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.+ .+|+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         1 m~~-kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCC-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            555 47999995 99999999999999999999998754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.99  E-value=0.013  Score=42.58  Aligned_cols=36  Identities=11%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||-+.+-.|..|++.--+|+|+-|++.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            469999999999999999999999999999988764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.015  Score=44.59  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|.++++++....
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4699999999999999999889999999997654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.83  E-value=0.011  Score=45.62  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|. +|.++|+++.
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            479999999999999999998997 7999997643

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.032  Score=39.29  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CcccEEEECCCh-----------HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGI-----------AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~-----------aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...+|+|||+||           ++..++.+|++.|++++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            456899999997           577889999999999999998875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.024  Score=43.46  Aligned_cols=35  Identities=26%  Similarity=0.241  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|=++-++++.|++.|.+|+|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~   52 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS   52 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence            35899999999999999999999999999988743

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.37  E-value=0.021  Score=43.96  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|. +|++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            479999999999999999999998 5778887654

>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.12  Score=36.13  Aligned_cols=95  Identities=15%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCC------e-EEEEEEecC---CCcCcccccChHHHHHHHH
Q 015303          175 FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ------T-IYWFFTWTS---SSQDKELEDHSAELKQFVL  244 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  244 (409)
                      +.++.+|++.+..+....-........+++..+..+|+.++      + ++|+.....   .........+...-+++++
T Consensus         2 ~~G~~aWRg~v~~~~~~~g~s~v~~~~g~~~~~V~YPi~~~~~~~G~~liN~Va~v~~~~~~~~~~~e~W~~~g~~~el~   81 (111)
T d3c96a2           2 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVL   81 (111)
T ss_dssp             EEEEEEEEEEEEESCCTTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHH
T ss_pred             ccCEEEEeeeEEcCCCCCCCCEEEEecCCCceEEEEecCCCCCCCcceeEEEEEEEecccccCCCCCCCcccccCHHHHH
Confidence            56889999999876533212222333356778899999654      3 445444321   1111111222222367888


Q ss_pred             HHhCCCChH---HHHHHHcCCCCceEeecc
Q 015303          245 GKLHDLPAQ---VKAVIEKTPLDSIISSRL  271 (409)
Q Consensus       245 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~  271 (409)
                      +.|+.|.+.   +..+++.+  ..+..+|+
T Consensus        82 ~~F~~W~~~~~di~~LI~~~--~~i~~wpl  109 (111)
T d3c96a2          82 PFFADWDLGWFDIRDLLTRN--QLILQYPM  109 (111)
T ss_dssp             HHHTTCCBTTBCHHHHHHTC--SEEEEEEE
T ss_pred             HHHcCCCCchhhHHHHHHhC--cceeeccC
Confidence            888899885   77888876  45555554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.30  E-value=0.017  Score=44.15  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..+...|.+|.+++.++.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            4799999999999999999999999999987643

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.27  E-value=0.018  Score=43.22  Aligned_cols=32  Identities=25%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|-.|.++|..|.+.|++|+++++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            79999999999999999999999999999874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.18  E-value=0.023  Score=43.75  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -|+|+|+|+.|+.+...++..|. +|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            59999999999999999999995 7999998765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.12  E-value=0.027  Score=38.38  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChHHHHH-HHHHHHcCCceEEEeCCC
Q 015303            2 ESVEDIVIVGAGIAGLTT-SLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         2 ~~~~dv~IiG~G~aGl~~-A~~L~~~g~~V~v~E~~~   37 (409)
                      ....+|-+||-|=+|+++ |..|+++|++|+-.|...
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            345789999999999776 999999999999999763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.05  E-value=0.029  Score=44.00  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|. +|+++|..+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            479999999999999998888776 7888887643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.03  E-value=0.027  Score=42.17  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      +|.|||+|-.|.+.|..|.+.| ++|.+++|++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            7999999999999999988887 89999998753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.021  Score=46.72  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            3589999999999999999999998 7999997754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.89  E-value=0.037  Score=42.12  Aligned_cols=35  Identities=9%  Similarity=0.182  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|+|+|=++-++++.|.+.|. +|.|+.|...
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            4689999999999999999999997 7999988643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.78  E-value=0.033  Score=41.05  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCC--ceEEEeCC
Q 015303            6 DIVIVG-AGIAGLTTSLGLYRLGI--RSMVLESS   36 (409)
Q Consensus         6 dv~IiG-~G~aGl~~A~~L~~~g~--~V~v~E~~   36 (409)
                      +|.||| +|-.|.++|+.|..+++  ++.|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 69999999999999986  69999964

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.046  Score=38.94  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             cccEEEECCCh-----------HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGI-----------AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~-----------aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+||           ++..+..+|++.|++++++..++.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            36899999998           578889999999999999998875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.63  E-value=0.039  Score=47.88  Aligned_cols=38  Identities=16%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             CCCcccEEEEC-CChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            1 MESVEDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         1 m~~~~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.++++|+|.| +|..|..++..|.++|++|+++|+...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            56678999999 699999999999999999999997643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.52  E-value=0.019  Score=43.18  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             CCCcccEEEECC-ChHHHHHHHHHHHcCC
Q 015303            1 MESVEDIVIVGA-GIAGLTTSLGLYRLGI   28 (409)
Q Consensus         1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~   28 (409)
                      |+++.+|.|||| |..|.++|+.|+..++
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            677789999997 9999999999998753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.14  E-value=0.042  Score=42.14  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|+.|+++...++..|. +|.++|.++.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            69999999999999999999996 6888887644

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.01  E-value=0.048  Score=45.56  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=32.2

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|+|+|| |..|..++..|.+.|++|.++.|...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            568999998 99999999999999999999998755

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.059  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             cEEEEC-CChHHHHHHHHHHH-cC--CceEEEeCC
Q 015303            6 DIVIVG-AGIAGLTTSLGLYR-LG--IRSMVLESS   36 (409)
Q Consensus         6 dv~IiG-~G~aGl~~A~~L~~-~g--~~V~v~E~~   36 (409)
                      +|.||| +|-.|.++|+.|+. .+  .++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            799999 59999999999864 34  589999964

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.81  E-value=0.056  Score=45.39  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|+|+|| |..|..++..|.++|++|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3568999997 99999999999999999999988654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.81  E-value=0.048  Score=41.76  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCce-EEEeCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRS-MVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V-~v~E~~~   37 (409)
                      -.|+|+|+|+.|++++..+...|.++ .+.|+++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            47999999999999999998889865 4566543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.62  E-value=0.07  Score=40.12  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|||+|-+|...|..|...|. +|+|+-|..
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4689999999999999999999998 588988763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.099  Score=40.27  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|+|+|-+|-+++..|++.|. +++|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3589999999999999999999997 6999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.06  E-value=0.044  Score=45.42  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            57999998 9999999999999999999999875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.85  E-value=0.071  Score=40.66  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|. .|+++|+++.
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            469999999999999999988885 6777887643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.69  E-value=0.11  Score=40.35  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             cccEEEEC-CChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|.| +|-.|..+|..|++.|.+|++++|+..
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            45789999 588999999999999999999998854

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.12  Score=38.71  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|||=|..|-.+|..|+..|.+|+++|.++.
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            5799999999999999999999999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.46  E-value=0.099  Score=39.88  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|+.|++++..++..|- +|+++|+.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            58999999999999999998876 6888887754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.33  E-value=0.047  Score=40.87  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             CcccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCC
Q 015303            3 SVEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~   36 (409)
                      ++.+|.|||| |..|.++|+.|+..++       ...++|..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            4579999996 9999999999987543       35566654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.13  E-value=0.11  Score=39.68  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|..|++++..++..|. +|.+++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            59999999999999999999985 7888887754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.02  E-value=0.096  Score=39.74  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+ |+.|++++..++..|. +|+++++++.
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchh
Confidence            36999995 9999999999988885 8999997743

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.47  E-value=0.12  Score=39.34  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|=++-+++..|.+.+.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3589999999999999999999888999999874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.91  E-value=0.13  Score=39.43  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|=++-++++.|++.| +|.|+-|...
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhh
Confidence            458999999999999999998877 8999988743

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.86  E-value=0.24  Score=32.83  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHH-HHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGIAGL-TTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~aGl-~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|-+||-|=+|+ .+|..|.++|++|.-.|+..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4788999888887 56999999999999999763

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.51  E-value=0.23  Score=38.02  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||.|..|-.+|..|...|.+|..+|+...
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            35799999999999999999999999999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.48  E-value=0.21  Score=37.98  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             CcccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCC
Q 015303            3 SVEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESS   36 (409)
Q Consensus         3 ~~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~   36 (409)
                      +..+|.|+|| |..|.++|+.|++..+       .+.++|..
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            3458999996 9999999999998532       45566644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.22  E-value=0.057  Score=38.81  Aligned_cols=37  Identities=14%  Similarity=-0.019  Sum_probs=28.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHH-cCCc-eEEEeCCCCc
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYR-LGIR-SMVLESSESL   39 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~-~g~~-V~v~E~~~~~   39 (409)
                      +++.|+|+|||-+|.+++..+.+ .|++ |..+|.++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46799999999999999887754 4666 5688876543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.22  E-value=0.23  Score=39.11  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            3 SVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+.+|+|.|+|-||+..|..|.+.+. ++.++|+.--
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            35689999999999999999998886 6899998643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.15  Score=45.04  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +.+|+|||+|-.|+.+|..|+..|+ +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            3589999999999999999999998 7999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.90  E-value=0.24  Score=36.75  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -..++|+|=|-.|--+|..|+..|.+|+|.|.++.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            35899999999999999999999999999998864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.66  E-value=0.2  Score=37.99  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|..|+++...++..|. +|++.++++.
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~   64 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence            58999999999999999999996 5666666543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.25  Score=37.42  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      -.|+|+|| |+.|+++...+...|.+|+++...
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            36999996 999999888888889999988865

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.89  E-value=0.29  Score=40.19  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=30.8

Q ss_pred             CCcccEEEECC-C--hHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            2 ESVEDIVIVGA-G--IAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         2 ~~~~dv~IiG~-G--~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+...++|.|| |  =.|.++|..|++.|.+|++.++++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            44567999996 3  3899999999999999999998743

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.63  E-value=0.36  Score=41.17  Aligned_cols=35  Identities=23%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CcccEEEECC-ChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            3 SVEDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         3 ~~~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++..|+|+|| |..|..++..|.++|++|.++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4578999997 9999999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.50  E-value=0.27  Score=39.17  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHH--------------------cCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYR--------------------LGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~--------------------~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-+++=+|..|.+                    .|. +|.++.|+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            589999999999999999988                    364 7999998855

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.34  E-value=0.32  Score=41.45  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|.| +|..|..++..|.+.|++|..+++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5899999 679999999999999999999998654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.31  E-value=0.36  Score=40.05  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=26.6

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -++|.| +|=.|.++|..|++.|.+|++.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355555 45689999999999999999999875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.28  E-value=0.19  Score=36.05  Aligned_cols=31  Identities=29%  Similarity=0.329  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -|+|+|.|..|..++..|.  |.+|.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            4899999999999999994  557889998765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.13  E-value=0.3  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHH--------------------HcCC-ceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLY--------------------RLGI-RSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~--------------------~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-+++=+|..|.                    +.|. +|.++-|+..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            58999999999999999887                    5666 6999988754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.72  E-value=0.38  Score=37.28  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||-|-.|..+|..|...|.+|..+|+...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            35799999999999999999999999999997654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.68  E-value=0.39  Score=37.34  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..|+|-|-|-+|..+|..|.+.|.+|++.|.+
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            57999999999999999999999999998854

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.66  E-value=0.33  Score=36.62  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=27.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|.|| |+.|+++...+...|.+|..+++.+.
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEEeccccchhhhhhhhccccccccccccccc
Confidence            5888896 99999998888888999999987643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.61  E-value=0.32  Score=41.25  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|+|| |..|..++..|.+.|++|+++|+-.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6999986 7899999999999999999998643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.57  E-value=0.35  Score=39.43  Aligned_cols=37  Identities=8%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CCCcccEEEECC-Ch--HHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGA-GI--AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~-G~--aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++...|+|.|| |-  .|.++|..|++.|.+|++.+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            455668999995 43  78999999999999999998764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.35  E-value=0.41  Score=38.67  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            7 IVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         7 v~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|.|| +-.|.++|..|++.|.+|.++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455575 44899999999999999999998754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.31  E-value=0.44  Score=36.97  Aligned_cols=35  Identities=11%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..|.|||.|-.|..+|..|...|.+|..+|+....
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccch
Confidence            57999999999999999999999999999986543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.08  E-value=0.33  Score=38.83  Aligned_cols=34  Identities=12%  Similarity=0.108  Sum_probs=29.7

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            6 DIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         6 dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|+|.||+= .|.++|..|++.|++|.++++....
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            689999865 7899999999999999999987653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=85.61  E-value=0.43  Score=35.99  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             cccEEEECCChHHHHHHHH--HHHc----CCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLG--LYRL----GIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~--L~~~----g~~V~v~E~~~~   38 (409)
                      .++|.|||||-.|.++++.  |++.    +.+++++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            4699999999999776543  3332    358999998753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.48  E-value=0.36  Score=39.35  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             CCCcccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            1 MESVEDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         1 m~~~~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++..-++|.||+- .|.++|..|++.|.+|++.+++.
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45554556666654 78899999999999999999874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.46  Score=38.56  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=27.7

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -|+|.||+- .|.++|..|++.|.+|.+.+++.
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488888775 78999999999999999999863

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.67  E-value=0.53  Score=36.26  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||.|-.|-.+|..|...|.+|..+|+...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccc
Confidence            4799999999999999999999999999998654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.33  Score=44.08  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +..|+|||+|..|+-+|..|+..|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4589999999999999999999997 799999765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=0.6  Score=37.73  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             CcccEEEECCCh---HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            3 SVEDIVIVGAGI---AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         3 ~~~dv~IiG~G~---aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ....|+|.||+=   .|.++|..|++.|.+|++.++++.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            345788888753   578999999999999999998754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.28  E-value=0.68  Score=35.45  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||.|-.|..+|..|...|.+|..+|+...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            35899999999999999999999999999998754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.11  E-value=0.62  Score=37.42  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -|+|.||+- .|..+|..|+++|.+|.+.+++..
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356668776 899999999999999999998743

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.01  E-value=1  Score=34.41  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ...|.|||.|-.|-.+|..|...|.+|..+|+....
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            358999999999999999999999999999986543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.92  E-value=0.71  Score=36.80  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=30.1

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCCCc
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSESL   39 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..|+|.||+= .|.++|..|+++|.+|.++++....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4789999854 8999999999999999999987543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.69  Score=37.13  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=28.2

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -++|.||+- .|.++|..|++.|.+|.+.+++..
T Consensus         7 valITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            467778776 789999999999999999998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.56  E-value=0.69  Score=38.59  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|.|| |..|..++..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6899987 88999999999999999999998754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.37  E-value=0.72  Score=36.67  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            6 DIVIVGA-GIAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         6 dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -++|-|| +=.|.++|..|++.|.+|++.+++..
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4666676 45889999999999999999998765

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.41  Score=39.40  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHc----CC-------ceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRL----GI-------RSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~----g~-------~V~v~E~~~   37 (409)
                      +.+|+|.|+|-||+..|..|...    |+       +|.++|+..
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            46899999999999999987654    42       599999764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=0.72  Score=38.50  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCC
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESS   36 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|+|.|| |..|..++..|.++|++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            47999986 789999999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.91  E-value=0.58  Score=36.94  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=26.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCceEEEe
Q 015303            5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLE   34 (409)
Q Consensus         5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E   34 (409)
                      ..|+|.|| |..|..++..|.++|++|.+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            47999995 9999999999999998877765

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.76  E-value=0.52  Score=38.50  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|.||+= .|.++|..|++.|.+|.+++|+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888776 78999999999999999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.33  E-value=0.7  Score=37.48  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .-++|.||+= .|.++|..|++.|.+|++.+++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4577778775 889999999999999999999764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.24  E-value=0.94  Score=35.98  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=29.5

Q ss_pred             cccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|.||+- .|.++|..|++.|.+|++.+|+.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999754 89999999999999999999874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.73  E-value=0.83  Score=37.19  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=26.9

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -++|.||+= .|.++|..|++.|.+|++.+++.
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466767654 78999999999999999999864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=0.92  Score=36.36  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=25.0

Q ss_pred             EEEEC-CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            7 IVIVG-AGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         7 v~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.| ++-.|.++|..|+++|.+|++.++++
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           9 IILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            44444 45589999999999999999999863

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.87  Score=36.47  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=28.3

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|.||+= .|.++|..|++.|.+|++.+|+.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4678888775 78999999999999999999863

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=80.54  E-value=0.5  Score=36.19  Aligned_cols=32  Identities=19%  Similarity=0.057  Sum_probs=26.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303            4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+.||||.+-  .|..|+++|++|+-+|-.+
T Consensus        21 ~~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S~   52 (201)
T d1pjza_          21 GARVLVPLCGKSQ--DMSWLSGQGYHVVGAELSE   52 (201)
T ss_dssp             TCEEEETTTCCSH--HHHHHHHHCCEEEEEEECH
T ss_pred             CCEEEEecCcCCH--HHHHHHHcCCceEeecccH
Confidence            3589999999986  4568889999999999654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.44  E-value=0.97  Score=36.45  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=26.7

Q ss_pred             cE-EEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            6 DI-VIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         6 dv-~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +| +|.||+- .|.++|..|++.|.+|++.+++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56 5557765 88999999999999999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.28  E-value=1  Score=36.27  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=28.1

Q ss_pred             ccEEEECCC---hHHHHHHHHHHHcCCceEEEeCCCC
Q 015303            5 EDIVIVGAG---IAGLTTSLGLYRLGIRSMVLESSES   38 (409)
Q Consensus         5 ~dv~IiG~G---~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .-++|.||+   =.|.++|..|++.|.+|++.++.+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            458888863   2799999999999999999987643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.16  E-value=0.92  Score=36.28  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=28.1

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCceEEEeCCC
Q 015303            5 EDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESSE   37 (409)
Q Consensus         5 ~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|.||+- .|.++|..|++.|.+|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678888764 88999999999999999999763