Citrus Sinensis ID: 015313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccEEEEEcccEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHccccccEEEEccccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEccccccccccHHHHcHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHcccccccccccccEEcccHHHHHHHHHccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccEEcccHHHHcHHcccccccccccccccccccccEEEEEEcccccccccccEEEEEcccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHccccccEEEEcccccccHHHHHcccccccccccccccccEEEEEEcccccccccEEccHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHccHHHHHHHHHHcccEEEcccHHHHHHHHHccccccccHHHccHHHccccEEEEEccccccHHHHHHHHHHcccEEEccccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccHHHHHHHccccc
Coil and Loop (DISEMBL)
MEVFKAAYKkgsmardsvairadqksysydqLASSALRISSLLcsndlkttsektknensavlaggcgarigivakpsFEFVAGVLGTWFSGciavplalsypesellhvmhdsdismvLSTEDYREVLQNVasksgakfslippvpnvssettvfdqsqaekmdgqrgedpalivytsgttgkpkgvvhTHKSIDAQVQMLTEAWeytsadqflhclplhhvHGLFNAllaplyagatvefmpkfsvRGIWQRWResypvngnrageaitaftgvPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMcgssalplpvmqqWETItghrllerygmTEFVMAISNplrgarkagtvgnplpgvqvkiaedesgsdaagvgeicvkspslfkeywklpkesrtlsscly
Flexible Loop (DISEMBL)
MEVFKAAykkgsmardsvairadqksysYDQLASSALRISSLLCSNDLKttsektknensavlAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVasksgakfslippvpnvssETTVFDQSqaekmdgqrgedPALIVYTsgttgkpkgvvHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSpslfkeywklpkesrtlsscly
Low Complexity Region (SEG)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQlassalrissllcsNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQaasasaaKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY
Disordered region (IsUnstruct)
************************************LRISSLLC****************AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV*****************************************LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG*****V*V***********AGVGEICVKSPSLFKEYWKL************
Disordered Region (DISOPRED)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT***********GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY
Disordered Region (DISEMBL)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ**********GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP***********
Disordered Region (DISPRO)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q8H151	544	Malonate--CoA ligase OS=A	yes	no	0.973	0.731	0.713	1e-168
Q4G176	576	Acyl-CoA synthetase famil	yes	no	0.882	0.626	0.373	6e-69
Q58DN7	586	Acyl-CoA synthetase famil	yes	no	0.880	0.614	0.355	8e-67
Q3URE1	583	Acyl-CoA synthetase famil	yes	no	0.792	0.555	0.380	8e-65
Q6GLK6	578	Acyl-CoA synthetase famil	N/A	no	0.779	0.551	0.378	5e-64
P94547	560	Long-chain-fatty-acid--Co	yes	no	0.848	0.619	0.275	2e-29
O07610	513	Long-chain-fatty-acid--Co	no	no	0.855	0.682	0.261	2e-28
Q0K844	509	Probable sulfoacetate--Co	no	no	0.872	0.701	0.267	5e-22
O30409	6486	Tyrocidine synthase 3 OS=	N/A	no	0.804	0.050	0.263	8e-22
B5XUP2	719	Bifunctional protein aas	yes	no	0.491	0.279	0.309	1e-21

>sp|Q8H151|AAE13_ARATH Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1

 Score =  591 bits (1523), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/409 (71%), Positives = 334/409 (81%), Gaps = 11/409 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP   KES T
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFT 404

Malonate--CoA ligase that catalyzes the formation of malonyl-CoA directly from malonate and CoA. May be required for the detoxification of malonate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 3

>sp|Q4G176|ACSF3_HUMAN Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=3

 Score =  261 bits (667), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 156/418 (37%), Positives = 226/418 (54%), Gaps = 57/418 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA-----R 70
           D +A+      ++Y +L S +LR+S  +C                  L G  G      R
Sbjct: 55  DRIALVDQHGRHTYRELYSRSLRLSQEICR-----------------LCGCVGGDLREER 97

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
           +  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L 
Sbjct: 98  VSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLS 157

Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+ 
Sbjct: 158 PVVRKLGV--PLLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLS 214

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS + 
Sbjct: 215 THQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ 274

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL 307
           +W+++  S           I  F  VPT+YT+L++ Y+   T+  A     A   +++RL
Sbjct: 275 VWEKFLSS-------ETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRL 327

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQV 366
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQV
Sbjct: 328 MVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQV 387

Query: 367 KIAE----------------DESGSDAA-----GVGEICVKSPSLFKEYWKLPKESRT 403
           +I                  DE G+          GE+ V+ PS+F+EYW  P+E+++
Sbjct: 388 RIVSENPQREACSYTIHAEGDERGTKVTPGFEEKEGELLVRGPSVFREYWNKPEETKS 445

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DN7|ACSF3_BOVIN Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 222/416 (53%), Gaps = 56/416 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+      ++Y  L   +LR+S  +C   L+  ++    E           R+ ++ 
Sbjct: 56  DRLALIDQHGRHTYKDLYLRSLRLSREICQ--LRACADGDLREE----------RVSLLC 103

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L  VA K
Sbjct: 104 SNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQK 163

Query: 136 SGAKFSLIPPVPNVSSETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            G        VP +    TV+     D  +   ++    +  A+I+YTSGTTG+PKGV+ 
Sbjct: 164 LG--------VPLLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLS 215

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS + 
Sbjct: 216 THDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQL 275

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLRL 307
           +W+++  S           I  F  VPT+Y++L+  Y+   T+        A   +++RL
Sbjct: 276 VWEKFLSS-------EAPQINVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIRL 328

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V+
Sbjct: 329 MVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEVR 388

Query: 368 IAEDESGSDAAGV---------------------GEICVKSPSLFKEYWKLPKESR 402
           I  +    D++                       GE+ V+ PS+F+EYW  P+E++
Sbjct: 389 IVSENPQKDSSPYLIHAEGSEENTKVTPGFEEKEGELLVRGPSVFREYWDKPEETK 444

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3URE1|ACSF3_MOUSE Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2

 Score =  248 bits (632), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 202/357 (56%), Gaps = 33/357 (9%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct: 97  RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct: 157 SPLAQRLGV--PLLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct: 214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLR 306
            +W+++  S           IT F  VPT+Y++L+  Y+   T+        A   +++R
Sbjct: 274 QVWEKFLSS-------EAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct: 327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query: 367 KIAE---------------DESGSDAA-----GVGEICVKSPSLFKEYWKLPKESRT 403
           +I                 +E G+          GE+ V+ PS+F+EYW  P+E+++
Sbjct: 387 RIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKS 443

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GLK6|ACSF3_XENLA Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1

 Score =  245 bits (625), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 196/351 (55%), Gaps = 32/351 (9%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +   +  +V      W SG IAVPL  S+P SEL +V+ DS  ++V++ E Y  VL
Sbjct: 98  RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVL 157

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G     +    N+   + +  + +  ++D    +  A+I+YTSGTTG+PKGV+
Sbjct: 158 SPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVL 216

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH ++ + V  L   W +T  D  LH LPLHHVHG+ N L+ PL+ GAT   +P+F  +
Sbjct: 217 STHYNLYSMVTALVNEWGWTKEDSILHVLPLHHVHGVVNKLMCPLWVGATCVILPEFCPK 276

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE---LQAASASAAKQLR 306
            +WQ +         R   +I  F  VPT+Y++LI  YE   T     +   A+  +++R
Sbjct: 277 TVWQHFL-------GRDVPSINIFMAVPTIYSKLIAYYEQHFTHSNVREFVRAACQERIR 329

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GSSALP+PV+++W+ ITGH LLERYGMTE  MA++NPL G R  G VG PLPGV+V
Sbjct: 330 LMVSGSSALPVPVLERWQEITGHTLLERYGMTEIGMALTNPLHGPRVPGAVGAPLPGVEV 389

Query: 367 KIAED-----------ESGSDAAGV----------GEICVKSPSLFKEYWK 396
           +                +  D+ G           GE+ V+ P++FKEYW 
Sbjct: 390 RTVTQNPRKEGTSYTTHAQGDSTGTMVSVGLENREGELQVRGPAVFKEYWN 440

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. May have some preference toward very-long-chain substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 186/425 (43%), Gaps = 78/425 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    K  ++  + + AL++++ L  N L+      K +  AV+   C        
Sbjct: 39  DKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQ------KGDRVAVMLPNCP------- 85

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------------- 120
               + V    G  F+G I V     Y E EL + + D+ +S+++               
Sbjct: 86  ----QTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTL 141

Query: 121 ---------STEDY----REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE----- 162
                    S +DY    + +L  +  K            N+ +  +   Q + E     
Sbjct: 142 SIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDF-DKTANIHTFASCMKQEKTELLTIP 200

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT---SADQFLHCLP 219
           K+D +   D A++ YT GTTG PKGV+ TH++I A  +M   AW Y     A++ L  +P
Sbjct: 201 KIDPEH--DIAVLQYTGGTTGAPKGVMLTHQNILANTEMCA-AWMYDVKEGAEKVLGIVP 257

Query: 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
             HV+GL   +   +  G  +  +PKF      +   +  P          T F G PT+
Sbjct: 258 FFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKP----------TLFPGAPTI 307

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           Y  L+        ELQ    S+ K     + GS+ALP+ V Q++E +TG +L+E YG++E
Sbjct: 308 YIGLLH-----HPELQHYDLSSIKSC---LSGSAALPVEVKQKFEKVTGGKLVEGYGLSE 359

Query: 340 FV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV--GEICVKSPSLFKEYWK 396
              +  +N + G  K G++G P P     I  +E+G  AA    GEI VK P + K YW 
Sbjct: 360 ASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWN 419

Query: 397 LPKES 401
            P+E+
Sbjct: 420 KPEET 424

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 186/406 (45%), Gaps = 56/406 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           DS+A R      +Y +L     R +  L    ++      K ++ A+L G          
Sbjct: 16  DSIACRFKDHMMTYQELNEYIQRFADGLQEAGME------KGDHLALLLGN--------- 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S +F+    G   +G + VP+   Y  +E+ +++ + D+  ++       + +++  +
Sbjct: 61  --SPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESM-HE 117

Query: 136 SGAKFSLI---------PPV--PNVSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTS 179
           S  K  L+         P    P V  + T F +     S A++      +D A+I+YTS
Sbjct: 118 SLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTS 177

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTGKPKG + TH+++ +    +         D  +  LP+ HV  L   + APL +GAT
Sbjct: 178 GTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGAT 237

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
           V   P+FS   +++  ++          +  T F GVPTMY  L Q       +  +   
Sbjct: 238 VLIEPQFSPASVFKLVKQ----------QQATIFAGVPTMYNYLFQHENGKKDDFSS--- 284

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVG 358
                +RL + G +++P+ ++  +E   G  +LE YG++E   +   NP    RK G++G
Sbjct: 285 -----IRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRKPGSIG 339

Query: 359 NPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKESR 402
             +  V+ K+  D  G +  A  VGE+ VK P++ K Y+K+P E+ 
Sbjct: 340 TSILHVENKVV-DPLGRELPAHQVGELIVKGPNVMKGYYKMPMETE 384

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 172/392 (43%), Gaps = 35/392 (8%)

Query: 18  VAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
           +A+RA Q   K Y     +  AL   +L        T   T   + A    G G  + + 
Sbjct: 17  IAVRAAQWPDKPYLLSPDSGHALTFGAL-------ATDAGTLGRSYAAAGLGSGQTVSVY 69

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                +    +LGT   G +  P+ L    ++L +++  SD  +V +  D    ++    
Sbjct: 70  LPNGEQTARLLLGTMACGLVVNPINLLCQPAQLRYILAHSDTRLVFTWPDGEAAIREALR 129

Query: 135 KSGAKFSLIPPVPNVSSETTV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           ++G    ++   P+ +S   +      A  +   + + PAL++YTSGTTG PKGV+ T +
Sbjct: 130 EAGLDVPVLVTAPDANSLPALPATHDAASPLPPPQPDAPALLMYTSGTTGTPKGVLLTQR 189

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++ A    ++       AD+ L  LPL+H++GL    +APL  G +V    +FS    WQ
Sbjct: 190 NLVANGTNVSREHCLGPADRVLATLPLYHINGLVVTAIAPLVHGGSVVMPMRFSASAFWQ 249

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                     + A    T    VPT+   L+      D   QA +      +R     S+
Sbjct: 250 ----------DSARHGCTWLNVVPTIIAYLLN-----DPHGQAPAG-----VRFCRSASA 289

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVM-AISNPLR-GARKAGTVGNPLPGVQVKI-AE 370
           ALP    + +E   G  ++E  GMTE    A SNPL  G R+ G++G P  G + ++   
Sbjct: 290 ALPPEHHRAFEARFGIGVIETMGMTETAAPAFSNPLDPGQRRIGSIGRP-SGTRARVLGR 348

Query: 371 DESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
           D   +    VGEI ++  S+   Y+K P  +R
Sbjct: 349 DGKPAPDGQVGEIVLQGESVMAGYYKAPDITR 380

Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O30409|TYCC_BREPA Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 175/399 (43%), Gaps = 70/399 (17%)

Query: 16   DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            D  A+   ++S +Y +L   A R++ +L +  +                 G    + I+A
Sbjct: 5671 DQAALLFSEQSLTYSELNERANRLARVLRAKGV-----------------GPDRLVAIMA 5713

Query: 76   KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
            + S E V G+LG   +G   VP+   YP+  + +++ DS+ +++LS              
Sbjct: 5714 ERSPEMVIGILGILKAGGAYVPVDPGYPQERIQYLLEDSNAALLLS-------------- 5759

Query: 136  SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE---------DPALIVYTSGTTGKPK 186
               +  L+P +  VSSE        AE   G  G          D A ++YTSGTTGKPK
Sbjct: 5760 ---QAHLLPLLAQVSSELPECLDLNAELDAGLSGSNLPAVNQPTDLAYVIYTSGTTGKPK 5816

Query: 187  GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
            GV+  H+ I   +Q   + + +  +D+ L         G   +L APL  GAT   +P+ 
Sbjct: 5817 GVMIPHQGIVNCLQWRRDEYGFGPSDKALQVFSF-AFDGFVASLFAPLLGGATC-VLPQE 5874

Query: 247  SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306
            +        ++   +    A   +T + GVP+++  +          L  ++ +   QLR
Sbjct: 5875 AAA------KDPVALKKLMAATEVTHYYGVPSLFQAI----------LDCSTTTDFNQLR 5918

Query: 307  LMMCGSSALPLPVMQQWETITGHRLLE---RYGMTE--FVMAISNPLRGARKAGTVGNPL 361
             +  G   LP+ ++Q+  T   H  +E    YG TE   V  IS  +  A +A T+G PL
Sbjct: 5919 CVTLGGEKLPVQLVQK--TKEKHPAIEINNEYGPTENSVVTTISRSIE-AGQAITIGRPL 5975

Query: 362  PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
              VQV I +++      G VGE+C+    L + Y   P+
Sbjct: 5976 ANVQVYIVDEQHHLQPIGVVGELCIGGAGLARGYLNKPE 6014

Incorporates six amino acids (for tyrocidine A, Asn, Gln, Tyr, Val, Orn, and Leu) in their L-configuration into the peptide product.

Brevibacillus parabrevis (taxid: 54914)

>sp|B5XUP2|AAS_KLEP3 Bifunctional protein aas OS=Klebsiella pneumoniae (strain 342) GN=aas PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 38/239 (15%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED A+I++TSG+ G PKGVVH+HKS+ A V+ +    ++T+ D+F+  LPL H  GL
Sbjct: 362 QQPEDAAMILFTSGSEGNPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              LL PL+ GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLLTPLFTGAEVFLYPS--------------PLHYRVVPELVYDRNCTVLFGTSTFLA 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFY-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKL 397
           E    +S  +  A K GTVG  LPG+  ++            G + +K P++ K Y ++
Sbjct: 515 ECAPVVSINVPMAAKVGTVGRILPGMDARLLAMPGIEQG---GRLQLKGPNIMKGYLRV 570

Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
225442581	552	PREDICTED: acyl-CoA synthetase family me	0.980	0.726	0.742	1e-169
380042380	564	acyl-activating enzyme 10 [Cannabis sati	0.982	0.712	0.698	1e-167
21536867	544	putative long-chain acyl-CoA synthetase	0.973	0.731	0.716	1e-167
9294464	608	long-chain-fatty-acid-CoA ligase-like pr	0.975	0.656	0.710	1e-166
297830202	608	hypothetical protein ARALYDRAFT_318392 [	0.973	0.654	0.710	1e-166
18401035	544	putative long-chain acyl-CoA synthetase	0.973	0.731	0.713	1e-166
224054376	539	predicted protein [Populus trichocarpa]	0.951	0.721	0.714	1e-165
297743247	583	unnamed protein product [Vitis vinifera]	0.980	0.687	0.690	1e-165
255549928	545	AMP dependent CoA ligase, putative [Rici	0.960	0.721	0.725	1e-163
449463158	610	PREDICTED: malonate--CoA ligase-like [Cu	0.955	0.640	0.665	1e-159

>gi|225442581|ref|XP_002279139.1| PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Vitis vinifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/408 (74%), Positives = 350/408 (85%), Gaps = 7/408 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHHVHGLFNALLAPL
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHVHGLFNALLAPL 239

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
           YAG+TVEFMPKFSVRGIWQRWRES+P +G +  +AIT FTGVPTMYTRLIQGYEAMD EL
Sbjct: 240 YAGSTVEFMPKFSVRGIWQRWRESHPKDGTKVDDAITVFTGVPTMYTRLIQGYEAMDPEL 299

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
           QAASASAA +LRLMMCGSSALP PVMQQWETITGHRLLERYGMTEFVMAISNPL+G RK 
Sbjct: 300 QAASASAASKLRLMMCGSSALPYPVMQQWETITGHRLLERYGMTEFVMAISNPLKGVRKG 359

Query: 355 GTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
           GTVG P PGVQVKI  DES ++  GVGE+C+KSPSLFKEYWKLP+ ++
Sbjct: 360 GTVGKPFPGVQVKILADESETETTGVGELCIKSPSLFKEYWKLPEVTK 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042380|gb|AFD33354.1| acyl-activating enzyme 10 [Cannabis sativa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/418 (69%), Positives = 333/418 (79%), Gaps = 16/418 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K   K+GS AR+ VAIRADQKSYSY QL SSA  I SLLC  +LK   E  K    
Sbjct: 1   MEVLKEVAKEGSAAREGVAIRADQKSYSYKQLISSAQSICSLLCGTELKAIHEAGKQARP 60

Query: 61  AV-------LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHD 113
           +             GARIGIVAKPS EFVAGVLGTW SG +AVPLALSYPE+ELLHVM+D
Sbjct: 61  SASINGAGGHGHLGGARIGIVAKPSAEFVAGVLGTWLSGGVAVPLALSYPEAELLHVMND 120

Query: 114 SDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR----- 168
           SDISM+LSTED++E++QN+A+K+ A+FSLIP VP+  S+    D  Q   +         
Sbjct: 121 SDISMILSTEDHQELMQNIAAKTSAQFSLIPSVPSSCSQEVAVDHRQTGDISTDSILLNR 180

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               E+PALIVYTSGTTGKPKGVVHTH+SI AQVQ L +AWEYT ADQFLHCLPLHHVHG
Sbjct: 181 EISNENPALIVYTSGTTGKPKGVVHTHQSISAQVQTLAKAWEYTPADQFLHCLPLHHVHG 240

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           LFNAL APLYA +TVEF+PKFSVRGIWQRWRESYP +  +A + IT FTGVPTMYTRLIQ
Sbjct: 241 LFNALFAPLYARSTVEFLPKFSVRGIWQRWRESYPTSETKANDCITVFTGVPTMYTRLIQ 300

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           GYEAMD EL+ ASASAAKQLRLMMCGSSALP+PVMQQW+TITGHRLLERYGMTEFVMAIS
Sbjct: 301 GYEAMDPELKEASASAAKQLRLMMCGSSALPVPVMQQWQTITGHRLLERYGMTEFVMAIS 360

Query: 346 NPLRGARKAGTVGNPLPGVQVKI-AEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
           NPL+G RK+GTVG P PGV+V+I AEDE+G DA GVGE+CV+SPSLFKEYW+LP+ ++
Sbjct: 361 NPLKGERKSGTVGKPFPGVEVRILAEDENGDDATGVGELCVRSPSLFKEYWRLPEVTK 418

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536867|gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 293/409 (71%), Positives = 335/409 (81%), Gaps = 11/409 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP   KES T
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFT 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294464|dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis thaliana]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/408 (71%), Positives = 332/408 (81%), Gaps = 9/408 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK    
Sbjct: 65  MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 124

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 125 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
           STED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 242

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 302

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
            VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
           A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTVG
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTVG 422

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
            PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP   KES T
Sbjct: 423 KPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFT 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830202|ref|XP_002882983.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata] gi|297328823|gb|EFH59242.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/408 (71%), Positives = 331/408 (81%), Gaps = 10/408 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEVFKAA+ +GS + D +AI+AD KSYSY QL SSA RIS L  + D     E  K E  
Sbjct: 66  MEVFKAAFSEGSNSCDRIAIKADGKSYSYGQLTSSAFRISKLFSNEDTTNGGETKKYEGF 125

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
             L G   ARIGIVAKPS EFVAGV+GTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 126 GSLKG---ARIGIVAKPSAEFVAGVMGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
           STED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGAQFHLIPPVVNSTSETVARNQFQDDSFEAEGKFLDDPALIVYT 242

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTGKPKGVVHTH SI++QV+MLTEAWEYTS D FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVKMLTEAWEYTSTDHFLHCLPLHHVHGLFNALFAPLYARS 302

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
            VEF+PKFSV GIW+RWRESYP N  +  +AIT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPQNDEKNNDAITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
           A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTVG
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTVG 422

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
            PLPGV+ KI EDE  +D+ GVGEICVKSPSLFKEYW LP   KES T
Sbjct: 423 KPLPGVEAKIKEDE--NDSNGVGEICVKSPSLFKEYWNLPEVTKESFT 468

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401035|ref|NP_566537.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|75299745|sp|Q8H151.1|AAE13_ARATH RecName: Full=Malonate--CoA ligase; AltName: Full=Acyl-activating enzyme 13; AltName: Full=Malonyl-CoA synthetase gi|23397257|gb|AAN31910.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|29893233|gb|AAP03025.1| acyl-activating enzyme 13 [Arabidopsis thaliana] gi|332642258|gb|AEE75779.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/409 (71%), Positives = 334/409 (81%), Gaps = 11/409 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP   KES T
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFT 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054376|ref|XP_002298229.1| predicted protein [Populus trichocarpa] gi|222845487|gb|EEE83034.1| predicted protein [Populus trichocarpa]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/403 (71%), Positives = 337/403 (83%), Gaps = 14/403 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K  Y++G+ A DS+AIRA+ KSYSY QL SSA  IS LLC++ L+T          
Sbjct: 1   MEVVKKVYRQGTAAADSIAIRAEHKSYSYKQLISSAWEISDLLCNSGLETVDG------- 53

Query: 61  AVLAGGC----GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
               GGC    GARIGIVAKPS EFVAG+L TWFSG +AVPLALSYPE+ELLHVM+D++I
Sbjct: 54  ---VGGCKHLGGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPETELLHVMNDAEI 110

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
           SMVLSTED++E++QNVA K  A+FSLIP V  +SS  +V D SQ E++  ++G+DPALI+
Sbjct: 111 SMVLSTEDHQELMQNVADKCAAQFSLIPSVHRISSHESVHDHSQVEEIALEKGDDPALII 170

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSGTTGKPKG VHTHKSI AQVQ L EAWEY+S DQFL+CLPLHHVHG FN+L AP+YA
Sbjct: 171 YTSGTTGKPKGAVHTHKSITAQVQTLAEAWEYSSTDQFLNCLPLHHVHGFFNSLFAPIYA 230

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           G+TVEFMPKFSVRGIWQRWRESYP NG++A +AIT FTGVPT+Y+RLIQGY AMD++ QA
Sbjct: 231 GSTVEFMPKFSVRGIWQRWRESYPPNGSKADDAITVFTGVPTIYSRLIQGYGAMDSDQQA 290

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT 356
           ASASAA+QLRLMM GSSALPLPVMQ+WE ITGHRLLERYGMTEFVMAISNPLRG RKAGT
Sbjct: 291 ASASAARQLRLMMSGSSALPLPVMQEWEAITGHRLLERYGMTEFVMAISNPLRGVRKAGT 350

Query: 357 VGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
           VG P PGVQVKIAED++ +D  GVGE+C++SPS+FKEYWKLP+
Sbjct: 351 VGKPFPGVQVKIAEDQNENDTTGVGELCIRSPSMFKEYWKLPQ 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743247|emb|CBI36114.3| unnamed protein product [Vitis vinifera]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/439 (69%), Positives = 350/439 (79%), Gaps = 38/439 (8%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH------------ 222
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHH            
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHIHKTIFRILKIS 239

Query: 223 -------------------VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNG 263
                              VHGLFNALLAPLYAG+TVEFMPKFSVRGIWQRWRES+P +G
Sbjct: 240 ISHNFDMKFLHGSLTLTIHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESHPKDG 299

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
            +  +AIT FTGVPTMYTRLIQGYEAMD ELQAASASAA +LRLMMCGSSALP PVMQQW
Sbjct: 300 TKVDDAITVFTGVPTMYTRLIQGYEAMDPELQAASASAASKLRLMMCGSSALPYPVMQQW 359

Query: 324 ETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEI 383
           ETITGHRLLERYGMTEFVMAISNPL+G RK GTVG P PGVQVKI  DES ++  GVGE+
Sbjct: 360 ETITGHRLLERYGMTEFVMAISNPLKGVRKGGTVGKPFPGVQVKILADESETETTGVGEL 419

Query: 384 CVKSPSLFKEYWKLPKESR 402
           C+KSPSLFKEYWKLP+ ++
Sbjct: 420 CIKSPSLFKEYWKLPEVTK 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549928|ref|XP_002516015.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223544920|gb|EEF46435.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/404 (72%), Positives = 329/404 (81%), Gaps = 11/404 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV ++ YK+GS A DS+AIRADQKSY+Y QL SSA  +S LLC+  LKT     +N   
Sbjct: 1   MEVVRSVYKQGSAAADSIAIRADQKSYTYAQLISSAWNVSKLLCNAGLKTADGVGENGQL 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GARIGIVAKPS EFVAGVL TWFSG +AVPLALSYPE+ELLHVM+DS+ISMVL
Sbjct: 61  G------GARIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPETELLHVMNDSEISMVL 114

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
           STEDY E++QNVA+KS A+FS+IP V +  S+T+    SQ   +D  RGEDPALIVYTSG
Sbjct: 115 STEDYCELMQNVAAKSAAQFSIIPSVASFPSQTSAHCHSQIGAVDADRGEDPALIVYTSG 174

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG---LFNAL--LAPLY 235
           TTGKPKG VHTHKSI AQVQ L EAWEYTS DQFLHCLPLHH+     L N +   A ++
Sbjct: 175 TTGKPKGAVHTHKSIFAQVQTLAEAWEYTSTDQFLHCLPLHHILEFIWLVNLVGCNAYVF 234

Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295
               VEFMPKFSVRGIWQRW+ESYP+NGN+AG+AIT FTGVPTMYTRLIQGYEAM+ ELQ
Sbjct: 235 TFLKVEFMPKFSVRGIWQRWQESYPLNGNKAGDAITVFTGVPTMYTRLIQGYEAMNPELQ 294

Query: 296 AASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAG 355
           AASASAAKQLRLMMCGSSALPLPVM++WE ITGHRLLERYGMTEFVMAISNP RG RKAG
Sbjct: 295 AASASAAKQLRLMMCGSSALPLPVMERWEAITGHRLLERYGMTEFVMAISNPFRGERKAG 354

Query: 356 TVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
           TVG P PGVQVKI +D+S +D  GVGE+CVKSPSLFKEYWKLPK
Sbjct: 355 TVGKPFPGVQVKIVQDDSENDTTGVGELCVKSPSLFKEYWKLPK 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463158|ref|XP_004149301.1| PREDICTED: malonate--CoA ligase-like [Cucumis sativus]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/415 (66%), Positives = 333/415 (80%), Gaps = 24/415 (5%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K+A K G+  R++VAIRA+QKS+SY QL SSAL+IS LL S+DL+T          
Sbjct: 62  MEVVKSAAKHGATCRENVAIRANQKSHSYIQLISSALKISDLLTSSDLRTGHGHLG---- 117

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GA+IGIVAKPS EF+AGVLGTWFSG +AVPLALSYPE+ELLHV++DS++SM+L
Sbjct: 118 -------GAKIGIVAKPSAEFLAGVLGTWFSGGVAVPLALSYPEAELLHVLNDSEVSMIL 170

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS---QAEKMDGQR--------- 168
           STED+ E +Q+VA+K+ A  SLIPPVP++ SE    DQS   + +  D  R         
Sbjct: 171 STEDHVEFMQSVAAKTVATVSLIPPVPHIYSERNSHDQSTNIEVDAADADRVFQGTVENL 230

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +DPALI+YTSGTTGKPKGVVHTHKSI +QVQML+ AWEYTSADQFLHCLPLHHVHGLFN
Sbjct: 231 SDDPALIIYTSGTTGKPKGVVHTHKSITSQVQMLSNAWEYTSADQFLHCLPLHHVHGLFN 290

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
            LLAP+YAG+TVEFMPKFSV GIW+RWRESYP   +++ +AIT FTGVPTMY RL+QGYE
Sbjct: 291 GLLAPIYAGSTVEFMPKFSVSGIWKRWRESYPSKSSKSDDAITVFTGVPTMYARLLQGYE 350

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL 348
           AMD+ELQ ASASAA+QLRLMMCGSSALP P+M+QW+ +TGH LLERYGMTEFVMAISNPL
Sbjct: 351 AMDSELQLASASAARQLRLMMCGSSALPPPIMKQWKEVTGHELLERYGMTEFVMAISNPL 410

Query: 349 RGARKAGTVGNPLPGVQVKI-AEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
            G RK GTVG P PGV+ KI A+D S +D++  GE+C++SPS+FKEYWKLP+ ++
Sbjct: 411 NGQRKIGTVGKPFPGVEAKIVADDGSTNDSSLEGELCIRSPSMFKEYWKLPEVTK 465

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2093432	544	AAE13 "acyl activating enzyme	0.973	0.731	0.682	9.6e-144
UNIPROTKB|Q4G176	576	ACSF3 "Acyl-CoA synthetase fam	0.728	0.517	0.413	9.9e-64
UNIPROTKB|Q58DN7	586	ACSF3 "Acyl-CoA synthetase fam	0.731	0.510	0.410	2.6e-63
UNIPROTKB|F1NXK4	456	ACSF3 "Uncharacterized protein	0.713	0.640	0.407	1.4e-62
UNIPROTKB|F1P6L8	600	ACSF3 "Uncharacterized protein	0.701	0.478	0.416	7.8e-62
MGI|MGI:2182591	583	Acsf3 "acyl-CoA synthetase fam	0.792	0.555	0.392	2.4e-60
RGD|1586037	583	Acsf3 "acyl-CoA synthetase fam	0.789	0.554	0.391	1.3e-59
ASPGD|ASPL0000061619	533	AN0562 [Emericella nidulans (t	0.772	0.592	0.401	9.6e-57
DICTYBASE|DDB_G0289539	546	DDB_G0289539 "Acyl-CoA synthet	0.794	0.595	0.386	7.8e-55
UNIPROTKB|I3LK72	442	ACSF3 "Uncharacterized protein	0.777	0.719	0.372	2.7e-52

TAIR|locus:2093432 AAE13 "acyl activating enzyme 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 279/409 (68%), Positives = 320/409 (78%)

Query:     1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQXXXXXXXXXXXXXXNDLKTTSEKTKN-EN 59
             MEVFKAA+ + S + D +AI+AD KSYSY Q              +D     ++TK  E 
Sbjct:     1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query:    60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct:    61 FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query:   120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
             LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct:   118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query:   178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
             TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct:   178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query:   238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXX 297
             + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q  
Sbjct:   238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query:   298 XXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
                  ++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct:   298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query:   358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP---KESRT 403
             G PLPGV+ KI EDE+  DA GVGEICVKSPSLFKEYW LP   KES T
Sbjct:   358 GKPLPGVEAKIKEDEN--DANGVGEICVKSPSLFKEYWNLPEVTKESFT 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IMP

UNIPROTKB|Q4G176 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 592 (213.5 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 129/312 (41%), Positives = 184/312 (58%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L
Sbjct:    97 RVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+
Sbjct:   157 SPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS +
Sbjct:   214 STHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQLR 306
              +W+++  S           I  F  VPT+YT+L++ Y+   T+            +++R
Sbjct:   274 QVWEKFLSSETPR-------INVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQ 365
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQ
Sbjct:   327 LMVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQ 386

Query:   366 VKIAEDESGSDA 377
             V+I  +    +A
Sbjct:   387 VRIVSENPQREA 398

GO:0005524 "ATP binding" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q58DN7 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 590 (212.7 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 128/312 (41%), Positives = 186/312 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+ ++      FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L
Sbjct:    98 RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELL 157

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               VA K G    L+P  P V       D  +   ++    +  A+I+YTSGTTG+PKGV+
Sbjct:   158 SPVAQKLGVP--LLPLPPTVYHGVAE-DPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVL 214

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   215 STHDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 274

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       ++ +R
Sbjct:   275 LVWEKFLSS------EAPQ-INVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIR 327

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   328 LMVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEV 387

Query:   367 KIAEDESGSDAA 378
             +I  +    D++
Sbjct:   388 RIVSENPQKDSS 399

GO:0005739 "mitochondrion" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NXK4 ACSF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 125/307 (40%), Positives = 183/307 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             RI  +      +V     +W SG IAVPL   +P  +L +V+ DS  ++V++ ++Y   +
Sbjct:    88 RISFLCPNDASYVVAQWASWMSGGIAVPLYKKHPVQQLEYVLEDSQSALVIAADEYVGKI 147

Query:   130 QNVASKSGAKFSLIPPVPNVSSE-TTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKG 187
                A K G     +    + S++ T V D   A     + RG   A+I+YTSGTTG+PKG
Sbjct:   148 SPSAKKLGVPVLPLRSHSSGSADHTAVEDVPLASSASWKDRG---AMIIYTSGTTGRPKG 204

Query:   188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
             V+ TH+++ A    L E WE+   D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS
Sbjct:   205 VLSTHENVQAVTTGLVEKWEWKQDDVILHVLPLHHVHGVINKLLCPLWVGATCIMLPEFS 264

Query:   248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQ 304
              + +W+++  S           ++ F  VPT+Y +LI+ Y+   ++ Q          + 
Sbjct:   265 AQMVWKKFLSSQ-------APRVSVFMAVPTIYAKLIEYYDEHFSQPQVQDFVRAFCQEN 317

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV 364
             +RLM+ GS+ALP+PV+++W+ ITGH LLERYGMTE  MA+SNPLRG R  G+VG PLPGV
Sbjct:   318 IRLMVSGSAALPVPVLKKWKAITGHTLLERYGMTEIGMALSNPLRGVRVPGSVGTPLPGV 377

Query:   365 QVKIAED 371
             +V+IA +
Sbjct:   378 EVRIATE 384

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

UNIPROTKB|F1P6L8 ACSF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 573 (206.8 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 129/310 (41%), Positives = 187/310 (60%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG IAVPL   +P +EL + + DS  S+VL+ ++Y E+L
Sbjct:   102 RVSFLCSNDVSYVVAQWASWMSGGIAVPLYKKHPPAELEYFIRDSRSSVVLAGQEYMELL 161

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG----QRGEDP-ALIVYTSGTTGK 184
             + V  K G     +P +P +SS  TV+  +  E  +G    Q   D  A+I+YTSGTTG+
Sbjct:   162 RPVVKKLG-----VPLLP-LSS--TVYGAAAEEPGEGKVWEQNWRDRGAMIMYTSGTTGR 213

Query:   185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
             PKGV+ TH +I A V  L   W ++  D  LH LPLHHVHG+ N LL PL+ GAT   +P
Sbjct:   214 PKGVLSTHHNIRAMVTGLVHKWAWSKHDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLP 273

Query:   245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXX 302
             +F+ + +W++      + G      I  F  VPT+Y +L+  Y+   T+  +Q       
Sbjct:   274 EFNAQLVWEK------LLGCETPR-INVFMAVPTIYAKLMDYYDRHFTQPHVQDFVRAVC 326

Query:   303 KQ-LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPL 361
             ++ +RLM+ GS+ALPLPV+++W++ITGH LLERYGMTE  MA+SNPL   R  G+VG PL
Sbjct:   327 EERIRLMVSGSAALPLPVLEKWQSITGHTLLERYGMTEIGMALSNPLTTVRVPGSVGTPL 386

Query:   362 PGVQVKIAED 371
             PGV+V+I  +
Sbjct:   387 PGVEVRIVSE 396

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:2182591 Acsf3 "acyl-CoA synthetase family member 3" [Mus musculus (taxid:10090)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 140/357 (39%), Positives = 207/357 (57%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct:   157 SPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + IT F  VPT+Y++L+  Y+   T+  +Q       K+ +R
Sbjct:   274 QVWEKFLSS------EAPQ-ITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query:   367 KIAED--ESGSD----AAG--------------VGEICVKSPSLFKEYWKLPKESRT 403
             +I  +  + GS     A G               GE+ V+ PS+F+EYW  P+E+++
Sbjct:   387 RIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKS 443

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=ISO

GO:0090410 "malonate catabolic process" evidence=ISO

RGD|1586037 Acsf3 "acyl-CoA synthetase family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 140/358 (39%), Positives = 211/358 (58%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVIAQWASWMSGGVAVPLYRKHPEAQLEYFIQDSRSSVVVVGQEYLERL 156

Query:   130 QNVASKSGAKF-SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
               +A + G     L P V + ++E  + +Q   E+    RG   A+I YTSGTTG+PKG 
Sbjct:   157 SPLAQRLGVPLLPLTPAVYHGAAEKPI-EQPIQEREWRDRG---AMIFYTSGTTGRPKGA 212

Query:   189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
             + TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS 
Sbjct:   213 LSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSA 272

Query:   249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-L 305
             + +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       K+ +
Sbjct:   273 QQVWEKFLSS------EAPQ-INMFMAVPTIYSKLLDYYDRHFTQSHVQDFVRAVCKERI 325

Query:   306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
             RLM+ GS+ALP+P++++W++ TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+
Sbjct:   326 RLMVSGSAALPVPLLEKWKSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVE 385

Query:   366 VKIAED--ESGSD----AAG--------------VGEICVKSPSLFKEYWKLPKESRT 403
             V+I  +  + GS     A G               GE+ VK PS+F+EYW  P+E+++
Sbjct:   386 VRIVSENPQKGSSYTIHAEGNMRGTKVTPGFEEKEGELLVKGPSVFQEYWDKPEETKS 443

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISO

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA;ISO

GO:0090410 "malonate catabolic process" evidence=IEA;ISO

ASPGD|ASPL0000061619 AN0562 [Emericella nidulans (taxid:162425)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 136/339 (40%), Positives = 189/339 (55%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL---STEDYR 126
             RI  +    +++       W SG I VPL  S+P  ELL+ + DSD S+++   + E + 
Sbjct:    69 RIAFLVPNGYDYAVTQWAVWASGGICVPLCTSHPVKELLYTIGDSDPSLIIIHPAFEKFE 128

Query:   127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
               L+   + +   F  + P     S   + + S          E  AL++YTSGTTGKPK
Sbjct:   129 APLREGTADTPRLFMTLTPFTQSPSPPQLPEFSPV-----YYPERRALMIYTSGTTGKPK 183

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             G + THK+I  Q Q L +AW+Y   D  +H LPLHH+HG+ N L A L AGATVE  PKF
Sbjct:   184 GAITTHKTITFQAQCLIQAWQYQPTDHLIHVLPLHHIHGIINGLTATLLAGATVEMYPKF 243

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--MDTELQXXXXXXXKQ 304
                 IW RW        N+     T F  VPT+Y+RL+  +EA    TE +         
Sbjct:   244 DPATIWTRWT-------NKGSS--TMFFAVPTIYSRLVDYFEAHIRGTEQETPAREGAAA 294

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPLPG 363
             LRL++ GS+ALP P+  ++ TIT   LLERYGMTE  M +S  L  A++  G+VG PLPG
Sbjct:   295 LRLLVSGSAALPTPIKTKFATITNQTLLERYGMTEIGMGLSCGLDVAQRIDGSVGWPLPG 354

Query:   364 VQVKIAEDESGS--DAAGV-GEICVKSPSLFKEYWKLPK 399
             VQV++ + E+G+  +AA V G I VK  ++F EYW+ P+
Sbjct:   355 VQVRLTDKETGAVIEAADVDGMIEVKGDNVFSEYWRRPE 393

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0289539 DDB_G0289539 "Acyl-CoA synthetase family member 3, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 135/349 (38%), Positives = 195/349 (55%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+      +F++V    G W +G  AVPLALS+P  EL + + +S  SM+L+  +    +
Sbjct:    64 RVAYFFGQNFDYVRSQWGIWAAGGTAVPLALSHPIHELQYTIENSKSSMILTNSENYSKM 123

Query:   130 QNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
             + + +        IP V   +   S+ +  +  +   +D  R    ALI+YTSGTT KPK
Sbjct:   124 KEIGTNLNIPVIEIPKVGEYTIPKSQWSSMEDYKQYSIDSNRN---ALIIYTSGTTSKPK 180

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             GVV TH +I+AQ+Q L + W++T  D  L  LPLHHVHG+ N +   L++GA  E MPKF
Sbjct:   181 GVVTTHANIEAQIQTLVDYWKWTEKDHILEVLPLHHVHGVINVVSCALWSGAICEMMPKF 240

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ--GYEAMDTELQXXXXXXXKQ 304
               + +  R  ES  ++ +   + I+ F  VPT+Y++LI+       D   +       K+
Sbjct:   241 DSKQVVDRLLES-GISTD-LDQPISLFMAVPTIYSKLIKYVNENITDPTERLAIENAFKR 298

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG 363
             LRLM+ GSSALP  V  +++ I+G  LLERYGMTE  MA+SNPL+   R  GTVG PLPG
Sbjct:   299 LRLMVSGSSALPESVRNEFQAISGQVLLERYGMTEIGMALSNPLKVNERIGGTVGFPLPG 358

Query:   364 VQVKIAEDESGSDAAG-------------VGEICVKSPSLFKEYWKLPK 399
             VQ+KI  + +  D                VGE+ VK P +FKEY++  K
Sbjct:   359 VQIKIQPELNNDDNQNNNQNNNDNNNNKEVGELLVKGPQVFKEYFEKRK 407

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|I3LK72 ACSF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 126/338 (37%), Positives = 187/338 (55%)

Query:    47 DLKTTSEKTKNENSAVLAGGCG----ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
             DL + S +   E  A+ A   G     R+ ++      +V  +  TW SG +AVPL   +
Sbjct:    72 DLYSRSLRLSREICALRACADGDLREERVSLLCANDASYVVALWATWMSGGVAVPLYRKH 131

Query:   103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQA 161
             P ++L + + DS  S+VL+  ++  VL  V  K G    L+P  P V           + 
Sbjct:   132 PPAQLEYFIRDSRSSVVLAGPEHAGVLGPVVGKLGVP--LLPLSPEVYLGAAEAPGAGRV 189

Query:   162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
              + D ++    A I+YTSGTTG+PKG++ TH++++A V  L   W +T  D  LH LPLH
Sbjct:   190 PERDWRKRA--ATIIYTSGTTGRPKGLLSTHRNLEAVVTGLVRKWAWTQDDVILHVLPLH 247

Query:   222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
             HVHGL N LL PL+ GA    +P+FS + +W+++    P         +  F  VPT+Y+
Sbjct:   248 HVHGLVNKLLCPLWVGAACVMLPEFSAQQVWEKFLS--P-----EAPRVNVFMAVPTIYS 300

Query:   282 RLIQGYEAMDTELQXXXXXXX---KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
             +L+  ++   T+            +++RLM+ GS+ALPLPV+++WE +TGH LLERYGMT
Sbjct:   301 KLMDYHDRHFTQPHVRDFVRAVCEEKIRLMVSGSAALPLPVLEKWEGVTGHTLLERYGMT 360

Query:   339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD 376
             E  MA+SN L   R  G+VG PLPGV+V+I       D
Sbjct:   361 EIGMALSNSLT-TRLPGSVGTPLPGVEVRIVSGNLQKD 397

GO:0090410 "malonate catabolic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H151	AAE13_ARATH	6, ., 2, ., 1, ., n, 3	0.7139	0.9731	0.7316	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-143
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	7e-75
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-72
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-71
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-69
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-62
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-61
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-56
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-52
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	6e-52
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-48
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-47
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-46
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-45
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-43
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-42
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	6e-40
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	9e-40
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-39
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-39
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-39
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-38
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-37
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	8e-37
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-36
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-36
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-36
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	6e-36
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-35
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-34
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-34
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-34
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-34
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-31
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-31
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-31
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	8e-31
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-30
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-30
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-29
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-27
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-27
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-26
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	7e-26
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	6e-25
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-24
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-24
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-24
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-24
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	7e-24
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-23
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	9e-23
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-22
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-22
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-22
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-22
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-22
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	6e-22
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-22
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-21
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-21
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-21
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-21
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-20
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-20
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-20
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-20
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-20
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-19
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-19
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	5e-19
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	8e-19
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-18
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-18
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-18
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-18
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-17
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-17
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-17
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-17
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	7e-17
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-16
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-16
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-16
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-16
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	4e-16
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-15
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-15
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-15
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-15
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-15
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-14
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-14
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-13
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-13
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-13
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-13
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-13
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-13
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-13
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-13
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	7e-13
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-12
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-12
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	6e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-12
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-11
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-11
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-11
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-11
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-11
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-10
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-09
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	2e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-09
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-09
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	3e-09
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	4e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	5e-09
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	6e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	7e-09
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	8e-09
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	9e-09
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-08
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-08
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-08
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-08
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-08
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	8e-08
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-07
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-07
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	3e-07
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	3e-07
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-07
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	5e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-07
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-06
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-06
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	4e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-06
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	5e-06
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	2e-05
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	5e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	7e-05
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-04
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	0.001
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.003
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	0.003
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.004

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  413 bits (1064), Expect = e-143
 Identities = 155/389 (39%), Positives = 216/389 (55%), Gaps = 84/389 (21%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+    +S +Y +L + + R++  L +  L                   G R+ ++A
Sbjct: 1   DRIALVDGGRSLTYGELDARSGRLAKALLALGLLP-----------------GDRVAVLA 43

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E+V   L  W +G +AVPL  SYP +EL +++ DS  S+++               
Sbjct: 44  PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              DPALI+YTSGTTG+PKGVV TH ++
Sbjct: 89  -----------------------------------DPALIIYTSGTTGRPKGVVLTHGNL 113

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
            A  + L EAW +T++D  LH LPLHHVHGLFNAL  PL+AGA+VEF+P+F  +      
Sbjct: 114 AANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQ------ 167

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                 +  R    IT F GVPT+YTRL++ YE  D     A+A+AA+ LRL + GS+AL
Sbjct: 168 ----ERDALRLLPRITVFMGVPTIYTRLLEHYEFDD-----AAAAAARNLRLFVSGSAAL 218

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P+PV+++WE  TGH LLERYGMTE  MA+SNPL G R+ GTVG PLPGV+V+I +++ G 
Sbjct: 219 PVPVLERWEERTGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGE 278

Query: 376 --DAAGVGEICVKSPSLFKEYWKLPKESR 402
              A  VGEI V+ P++F EYW  P+ + 
Sbjct: 279 PLAAGEVGEIQVRGPNVFSEYWNKPEATA 307

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  242 bits (619), Expect = 7e-75
 Identities = 112/403 (27%), Positives = 180/403 (44%), Gaps = 50/403 (12%)

Query: 16  DSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+    +    +Y +L   A R+++ L +  +K                  G R+ I
Sbjct: 26  DRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKP-----------------GDRVAI 68

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF+   L    +G +AVPL       EL ++++D+   +++++ ++  +L+ VA
Sbjct: 69  LLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA 128

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD------GQRGEDPALIVYTSGTTGKPKG 187
                   ++             +   AE             +D A ++YTSGTTG PKG
Sbjct: 129 EALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKG 188

Query: 188 VVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP- 244
           VV TH+++ A    +  A     T  D  L  LPL H+ GL   LLAPL  G T+  +  
Sbjct: 189 VVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP 248

Query: 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
             F    +     E Y V         T  +GVPT    L+          +      + 
Sbjct: 249 EPFDPEEVLW-LIEKYKV---------TVLSGVPTFLRELLD-------NPEKDDDDLSS 291

Query: 304 QLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTE--FVMAISNPLRGARKAGTVGNP 360
            LRL++ G + LP  +++++E   G   +LE YG+TE   V+ I+ P     K G+VG P
Sbjct: 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRP 351

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESR 402
           LPGV+V+I + + G    G VGEI V+ P++ K YW  P+ + 
Sbjct: 352 LPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATA 394

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  233 bits (598), Expect = 2e-72
 Identities = 112/394 (28%), Positives = 171/394 (43%), Gaps = 71/394 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L   + R ++ L    +K                  G R+ ++ 
Sbjct: 14  DRPALTFFGRKLTYAELDELSDRFAAYLQQLGVK-----------------KGDRVALML 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F     G   +G + VP+   Y   EL H ++DS   +++    + + L      
Sbjct: 57  PNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDAL-----A 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
           SGA   L   +                       +D A++ YT GTTG PKG + TH+++
Sbjct: 112 SGAPLPLPVELS---------------------PDDLAVLQYTGGTTGVPKGAMLTHRNL 150

Query: 196 DAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI-- 251
            A VQ +           D+FL  LPL H+ GL   +L  L  GAT   +P F    +  
Sbjct: 151 VANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK 210

Query: 252 -WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
             +R+R              T F GVPT+Y  L+   E    +           LRL + 
Sbjct: 211 EIKRYR-------------FTIFPGVPTLYNALLNHPEFKKYDF--------SSLRLCIS 249

Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIA 369
           G + LP+ V +++E  TG  L+E YG+TE     + NPL G RK G++G PLPG +VKI 
Sbjct: 250 GGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIV 309

Query: 370 EDESGSDAAG-VGEICVKSPSLFKEYWKLPKESR 402
           +DE      G VGE+ V+ P + K YW  P+E+ 
Sbjct: 310 DDEGNELPPGEVGELVVRGPQVMKGYWNRPEETA 343

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  232 bits (595), Expect = 1e-71
 Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 51/402 (12%)

Query: 6   AAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLA 64
            A +     RD+  I   D   Y+Y  L +++ R+++LL +  +K               
Sbjct: 7   DALRAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKP-------------- 52

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
              G R+ +  + S E +A  L T  +G + +PL  +Y  +EL + + D++ ++V+    
Sbjct: 53  ---GDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPA 109

Query: 125 YREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQAEKMDGQ----RGEDPALIVYT 178
               L  +A+ +GA    +L     +     ++ + + A   D +      +D A I+YT
Sbjct: 110 NFAWLSKIAAAAGAPHVETL-----DADGTGSLLEAAAAAPDDFETVPRGADDLAAILYT 164

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTG+ KG + +H ++ +    L + W +T  D  +H LP+ H HGLF A    L AGA
Sbjct: 165 SGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           ++ F+PKF    +      +            T   GVPT YTRL+Q     +  L   +
Sbjct: 225 SMIFLPKFDPDAVLALMPRA------------TVMMGVPTFYTRLLQ-----EPRL---T 264

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
             AA  +RL + GS+ L     ++++  TGH +LERYGMTE  M  SNP  G R+AGTVG
Sbjct: 265 REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVG 324

Query: 359 NPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLP 398
            PLPGV +++ + E+G++     +G I VK P++FK YW++P
Sbjct: 325 FPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMP 366

Length = 504

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  223 bits (571), Expect = 5e-69
 Identities = 105/385 (27%), Positives = 167/385 (43%), Gaps = 45/385 (11%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A R+++ L +  +                   G R+ I+   S E+V  +L 
Sbjct: 1   TYRELDERANRLAAALRALGVGP-----------------GDRVAILLPNSPEWVVAILA 43

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
              +G   VPL  S P   L +++ DS+  ++++ ++    L  V  K     +LI    
Sbjct: 44  VLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD 103

Query: 148 NVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           +      + D      S          +D A I+YTSGTTGKPKGV+ TH+++ A    L
Sbjct: 104 DGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGL 163

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR-GIWQRWRESYPV 261
            E +  T  D+ L  LPLH   G    +  PL AG T+  +PKF++         E Y V
Sbjct: 164 AERFGLTPGDRVLLLLPLHF-DGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321
                    T   GVPT+   L+        +           LRL++ G   LP  +++
Sbjct: 223 ---------TVLYGVPTLLRLLL--------KAPEEKKYDLSSLRLVLSGGEPLPPELLR 265

Query: 322 QWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA 378
           +     G   L+  YG TE   V   + P     K G++G PLPGV+VK+ ++E      
Sbjct: 266 RLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPP 325

Query: 379 GV-GEICVKSPSLFKEYWKLPKESR 402
           G  GE+C++ P + + Y   P+ + 
Sbjct: 326 GEVGELCIRGPGVARGYLNDPELTA 350

Length = 412

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  208 bits (531), Expect = 1e-62
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 68/393 (17%)

Query: 11  GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA- 69
            + A  + A+R   +  S   LA +A                       +AV     GA 
Sbjct: 10  AAAADIADAVRIGGRVLSRSDLAGAA-----------------------TAVAERVAGAR 46

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREV 128
           R+ ++A P+   V  V+G   +G   VP+      +E  H++ DS     L    D    
Sbjct: 47  RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG 106

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
           L +V  +  A+     P P+  +                    PALIVYTSGTTG PKGV
Sbjct: 107 LPHVPVRLHARSWHRYPEPDPDA--------------------PALIVYTSGTTGPPKGV 146

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V + ++I A +  L EAW++T+ D  +H LPL HVHGL   +L PL  G       + + 
Sbjct: 147 VLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTP 206

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
                   E+Y    +  G   T + GVPT+++R+     A D E   A   A    RL+
Sbjct: 207 --------EAYAQALSEGG---TLYFGVPTVWSRI-----AADPEAARALRGA----RLL 246

Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI 368
           + GS+ALP+PV  +   +TGHR +ERYGMTE ++ +S    G R+ G VG PL GV+ ++
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRL 306

Query: 369 AEDESG---SDAAGVGEICVKSPSLFKEYWKLP 398
            +++ G    D   VGE+ V+ P+LF  Y   P
Sbjct: 307 VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRP 339

Length = 471

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  199 bits (509), Expect = 9e-61
 Identities = 89/234 (38%), Positives = 123/234 (52%), Gaps = 19/234 (8%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           DPA I+YTSGTTGKPKGVV +H+++ A  Q L +A   T  D  L  LPL HV G  + L
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L  L AG TV     F     +    E Y          +T   GVPT+Y  L +  E  
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQY---------RVTVLFGVPTLYDALAKAAEDR 111

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLR 349
             +L  +S      LRL++ G   L   +++++E   G  +LE YG+TE  +  S NP  
Sbjct: 112 GYDL--SS------LRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDS 163

Query: 350 GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESR 402
             +K GTVG P+PGV+V++ ++E      G VGE+ V+ P + K YW  P E+ 
Sbjct: 164 ELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETT 217

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  187 bits (478), Expect = 4e-56
 Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 30/240 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI+YTSGTTG+PKGV+ TH+++ A         + +  D +L   PL+H       
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59

Query: 230 LLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           LL  L AG TV  MPKF    +    +R R             +T    VPTM+ RL++ 
Sbjct: 60  LLPALAAGGTVVLMPKFDPEAVLDLIERHR-------------VTHTFLVPTMFQRLLRL 106

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAI 344
            +    +L +        LRL++ G++ +P  + +      G   ++ YGMTE      +
Sbjct: 107 PDFARYDLSS--------LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTL 158

Query: 345 SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKESR 402
            +P    RK G+VG P+PGV+V+I  DE G +     VGEI V+ P++   YW  P+ + 
Sbjct: 159 LSPEDWLRKLGSVGRPVPGVEVRIV-DEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATA 217

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  181 bits (463), Expect = 1e-52
 Identities = 103/389 (26%), Positives = 166/389 (42%), Gaps = 99/389 (25%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           ++ ++ +LA    R+++ L                   L    G R+ I+A+   E+V  
Sbjct: 4   QTITWAELAERVRRLAAGL-----------------IALGVKPGDRVAILAENRPEWVIA 46

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L    +G + VP+  +    E+ ++++DS   +V   ED                    
Sbjct: 47  DLAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVF-VED-------------------- 85

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                  + +D A ++YTSGTTG PKGV+ TH+++ AQ   L E
Sbjct: 86  -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLE 122

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264
               +  D+ L  LPL HV         PL +GA V F    S   + +  RE       
Sbjct: 123 VIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLRE------- 173

Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---------QLRLMMCGSSAL 315
                 T F  VP ++ ++   Y  ++ ++ AA     K         +LR  + G + L
Sbjct: 174 ---VRPTVFFAVPRVWEKI---YAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPL 227

Query: 316 PLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
           P  V++ +  + G  +LE YG+TE   V  ++ P  G  + GTVG PLPGV+V+IAED  
Sbjct: 228 PPEVLEFFRAL-GIPILEGYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIAED-- 282

Query: 374 GSDAAGVGEICVKSPSLFKEYWKLPKESR 402
                  GEI V+ P++ K Y+K P+ + 
Sbjct: 283 -------GEILVRGPNVMKGYYKNPEATA 304

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  176 bits (450), Expect = 6e-52
 Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 27/240 (11%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI YTSGTTG+PKG + TH+++      +      T  D+ L  +PL HV GL   
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           +LA L AGAT+  M KF      +              E ITA  GVPTM+  L+     
Sbjct: 62  VLASLTAGATLVLMEKFDPGAALRLIER----------ERITALHGVPTMFIALL----- 106

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-----FVMA 343
              E           LR  + G + +P  ++++         +   YGMTE        +
Sbjct: 107 ---EHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTS 163

Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESR 402
             +P     + GTVG PLPGV+VKI + + G    G VGEICV+  S+ K Y+  P+ + 
Sbjct: 164 GDDPY--EDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATA 221

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  173 bits (441), Expect = 2e-48
 Identities = 99/428 (23%), Positives = 162/428 (37%), Gaps = 87/428 (20%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            +Y +L      ++S L S  +                   G R+ I A    E+    L
Sbjct: 46  ITYRELYERVRALASGLLSLGIPA-----------------GDRVAIFAANRPEWAIADL 88

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREVLQNVASKSGAKFSLIPP 145
                G ++VP+  +    +L +++++S+  ++    ++  +++  V         LI  
Sbjct: 89  AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVI 148

Query: 146 V-----------------PNVSSETTVFDQSQAEKMDGQR-GEDPALIVYTSGTTGKPKG 187
           +                 P+      + D +  E        +D A I+YTSGTTG PKG
Sbjct: 149 IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKG 208

Query: 188 VVHTHKSIDAQVQMLTEAWEY----TSADQFLHCLPLHHVHGLFNALLAPLYAGATV--- 240
           V+ TH+++ AQV       E        D+ L  LPL H+          LY G TV   
Sbjct: 209 VMLTHRNLLAQV---AGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK 265

Query: 241 -----------EFMPKF--SVRGIWQRWRE-------SYPVNGNRAGEAITAFTGVPTMY 280
                      E  P     V  +W++  +         P    +      A        
Sbjct: 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR--WALKVAYKKI 323

Query: 281 TRLIQGYEAMDTELQA-------ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
           +R + G   +   L A          +   ++R  + G + L  P +  +    G  +LE
Sbjct: 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLS-PELLHFFRSLGIPILE 382

Query: 334 RYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFK 392
            YG+TE    +S NP       GTVG PLPG++VKIA+D         GEI V+ P++ K
Sbjct: 383 GYGLTETSAVVSVNPPDR-FVLGTVGKPLPGIEVKIADD---------GEILVRGPNVMK 432

Query: 393 EYWKLPKE 400
            Y+K P+ 
Sbjct: 433 GYYKNPEA 440

Length = 613

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  168 bits (429), Expect = 2e-47
 Identities = 93/413 (22%), Positives = 169/413 (40%), Gaps = 70/413 (16%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  D +  +Y +L     R+++ L +  +K                  G R+ +  
Sbjct: 21  DKEAVYFDGRRTTYAELDERVNRLANALRALGVKK-----------------GDRVAVFD 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E++         G +  P+ +     E+ ++++D++  +VL   ++  +L  +  +
Sbjct: 64  WNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ 123

Query: 136 SGAKFSLIPPVPNV-------SSETTVFDQSQAEKMDGQRGEDP---------ALIVYTS 179
                  +P V  V       ++          E +                 A ++YTS
Sbjct: 124 -------LPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTS 176

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTG PKGVV +H+++      +    + +  D +L  +P+ HVH         L AGA 
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMAGAK 235

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
                +F    +                E +T F  VPT++  L++   A   +  +   
Sbjct: 236 QVIPRRFDPENLLDLIET----------ERVTFFFAVPTIWQMLLKAPRAYFVDFSS--- 282

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNP----LRGARK 353
                LRL++ G +ALP  ++++++   G  L++ YGMTE   V+++  P         K
Sbjct: 283 -----LRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTK 337

Query: 354 AGTVGNPLPGVQVKIAEDESG----SDAAGVGEICVKSPSLFKEYWKLPKESR 402
             + G PLPGV+ +I  D+ G     D   VGEI V+ P L + YW  P+ + 
Sbjct: 338 RRSAGRPLPGVEARIV-DDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATA 389

Length = 521

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  162 bits (413), Expect = 1e-46
 Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 21/237 (8%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI++TSGTTG+PKGV  THK++ A  + + ++ + T +D+ L+ +PL H+HGL  +
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           LLA L AG +V   PKFS    W    +             T ++ VPT++  L++  + 
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFWDDIAKYRV----------TWYSAVPTIHQILLKTAK- 110

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-SNPL 348
                         +LR +   S+ LP  V+ + E   G  +LE YGMTE    I SNPL
Sbjct: 111 ------PNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPL 164

Query: 349 RGA-RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRT 403
               RK G+VG P  GV+V I +D+      G  GEI ++ P++   Y   P+ +R 
Sbjct: 165 PPLVRKPGSVGRPA-GVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE 220

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  162 bits (413), Expect = 4e-45
 Identities = 104/412 (25%), Positives = 169/412 (41%), Gaps = 53/412 (12%)

Query: 3   VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAV 62
           + +AA + G    D  A     +  +Y +L +   R ++ L                 A 
Sbjct: 11  LARAARRFG----DKEAYVFGDQRLTYAELNARVRRAAAAL-----------------AA 49

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G G R+ I A  S  +V   LG   +G + VPL   Y   E  +++   D   +   
Sbjct: 50  LGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVL 109

Query: 123 ED----YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-----SQAEKMDGQRGEDPA 173
                        + +               + +   F         AE+      +D A
Sbjct: 110 GLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVA 169

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233
            I++TSGTTG+PKG + TH+ + +      E    T  D++L   P  HV G    + AP
Sbjct: 170 DILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAP 229

Query: 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           L  GAT+  +P F    +++              E IT   G PTMY  L+Q        
Sbjct: 230 LMRGATILPLPVFDPDEVFRLIET----------ERITVLPGPPTMYNSLLQ-------- 271

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFV-MAISNPLRGA 351
               SA     LRL + G++++P+ +++++E+  G   +L  YG++E   +   N L   
Sbjct: 272 HPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD 331

Query: 352 RK--AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKE 400
           RK  AGT+G  + GV+ KI  +       G VGE+ V+ P++ K Y+  P+ 
Sbjct: 332 RKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEA 383

Length = 513

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  156 bits (397), Expect = 4e-43
 Identities = 106/413 (25%), Positives = 164/413 (39%), Gaps = 78/413 (18%)

Query: 18  VAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             I AD     ++  L   ALR++  L    LK                  G  + +++ 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQ-----------------GDVVALISP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S EF    LG   +G I      SY   EL H +  S   ++    D  + ++  A + 
Sbjct: 44  NSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKEL 103

Query: 137 GAKFSLI---------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           G    +I           + ++       +            +D A ++Y+SGTTG PKG
Sbjct: 104 GPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKG 163

Query: 188 VVHTHKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           V+ +HK+I A   QVQ   +    +S D  L  LP +H +GL   L + L  GATV  MP
Sbjct: 164 VMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLC-GATVIIMP 222

Query: 245 KFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
           KF      + I ++++             +T+   VP +   L     A    +     S
Sbjct: 223 KFDSETFLKLI-EKYK-------------VTSLFLVPPIAVAL-----AKSPLVDKYDLS 263

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLER---------YGMTEFVMAISNPLRGA 351
           +   LR++  G++ L   +           L +R         YGMTE   A +    G 
Sbjct: 264 S---LRVIFSGAAPLSKEL--------QEELRKRFPNTTIKQGYGMTETGPATTLTPPGD 312

Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAG---VGEICVKSPSLFKEYWKLPKES 401
            K G+VG  +P V+ KI  DE G  + G    GE+CVK P + K Y   P+ +
Sbjct: 313 EKPGSVGRLVPNVEAKI-VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEAT 364

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  153 bits (389), Expect = 2e-42
 Identities = 91/345 (26%), Positives = 143/345 (41%), Gaps = 80/345 (23%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ +  + S +FV        +G + VP+     E+EL H+++DS   +++       
Sbjct: 26  GDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIV------ 79

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                 G   +D A+I YTSGTTG PKG
Sbjct: 80  --------------------------------------GSELDDVAVIPYTSGTTGLPKG 101

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +HTH+++ A           T     L  LPL HV G+  ++ AP+Y GAT+  +    
Sbjct: 102 CMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT--- 158

Query: 248 VRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                 RW RE+       A  AI     T +T + TM   L+      D +L +     
Sbjct: 159 ------RWDREA-------AARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSS----- 200

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA--ISNPLRGARKAGTVGN 359
              L+++  G +ALP  V ++ + +TG    E YG+TE       + P R   K   +G 
Sbjct: 201 ---LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRP--KPQCLGI 255

Query: 360 PLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKESR 402
           P+ G   ++ + E+G        GEI V+ P +FK YW  P+ + 
Sbjct: 256 PVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATA 300

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  149 bits (378), Expect = 6e-40
 Identities = 102/433 (23%), Positives = 163/433 (37%), Gaps = 111/433 (25%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A  I++ L +                   G  G R+ ++A P  +FVA   G
Sbjct: 25  TYAELDRRARAIAARLQA------------------LGAPGDRVLLLAPPGLDFVAAFFG 66

Query: 88  TWFSGCIAVPLALSYPESE----LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI 143
             ++G IAVP             L  ++ D+    VL+T      L+   +   A     
Sbjct: 67  CLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAA----- 121

Query: 144 PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT 203
             +  ++++      +   +      +D A + YTSG+TG PKGV+ TH ++ A ++ + 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPV 261
            A+     D  +  LPL+H  GL   LL PLYAG  V  M    F  R +  RW      
Sbjct: 182 RAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPL--RWL----- 234

Query: 262 NGNRAGEAITAF----TGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLMMCGS 312
                 EAI+ +    +G P         Y+     ++         L     R+   G+
Sbjct: 235 ------EAISRYRATVSGAPNF------AYDLC---VRRVRDEQLAGLDLSSWRVAFNGA 279

Query: 313 SALPLPVMQQWETITGHRLLER--------------YGMTEFVMAIS------------- 345
                PV  + +T+   R  ER              YG+ E  +A+S             
Sbjct: 280 E----PV--RADTL--ERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRV 331

Query: 346 --------------NPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPS 389
                              AR+  + G PLPG +V+I + E+        VGEI V+ PS
Sbjct: 332 DRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPS 391

Query: 390 LFKEYWKLPKESR 402
           +   YW  P+ + 
Sbjct: 392 VAAGYWNRPEATA 404

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  148 bits (374), Expect = 9e-40
 Identities = 94/403 (23%), Positives = 177/403 (43%), Gaps = 58/403 (14%)

Query: 9   KKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG 68
           K+  +  D +AI  +++  +Y QL     ++++ L   +L                   G
Sbjct: 10  KRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYL-IYELNVKK---------------G 53

Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI I+++ S E++  +       CIAVPL +   E+EL+  + DS  +++   + +   
Sbjct: 54  ERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF--- 110

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
            QN+A        +   + +++S   + D+     ++        +I YTSGTTGKPKG 
Sbjct: 111 -QNMALSMQKVSYVQRVI-SITSLKEIEDRKIDNFVEKN-ESASFIICYTSGTTGKPKGA 167

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV----EFMP 244
           V T +++       T A + T  D+ +  LPL H+ G+       L+AG  +    +F P
Sbjct: 168 VLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEP 227

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
             ++  I +                +T   GVPT++  LI   +   T LQ+        
Sbjct: 228 TKALSMIEK--------------HKVTVVMGVPTIHQALINCSKFETTNLQS-------- 265

Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGN 359
           +R    G +  P  +M+++    G    + +GMTE     F+++  +     RK G++G 
Sbjct: 266 VRWFYNGGAPCPEELMREFID-RGFLFGQGFGMTETSPTVFMLSEED---ARRKVGSIGK 321

Query: 360 PLPGVQVKIAEDESGS-DAAGVGEICVKSPSLFKEYWKLPKES 401
           P+     ++ ++     +   VGE+ ++ P++ KEYW  P  +
Sbjct: 322 PVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDAT 364

Length = 496

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  147 bits (373), Expect = 2e-39
 Identities = 99/404 (24%), Positives = 169/404 (41%), Gaps = 60/404 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+  D  S +Y +L     R       N L+    + +N            R+ ++ 
Sbjct: 20  DKIALYYDDGSLTYGELQEEVNR-----WGNALRELGIEREN------------RVLLIL 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             + EF     G    G + VP+       +  + ++DS   +++ +E+  EVL+    K
Sbjct: 63  LDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQK 122

Query: 136 --SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVVHT 191
                   ++      +        + AE+++      +D A  +Y+SG+TG+PKGVVH 
Sbjct: 123 DPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHL 182

Query: 192 HKSID-------AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           H  +          V  +TE       D       L   +GL N L  PL  GAT   MP
Sbjct: 183 HHDMLVTAEAYAKNVLGITE------DDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMP 236

Query: 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
           +  +   ++       P          T F GVPT+Y  ++   E  + +L         
Sbjct: 237 ERPTPDAVFATIERYKP----------TVFFGVPTLYAAMLAAPEKPERDL--------- 277

Query: 304 QLRLMMCGSSALPLP--VMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVGNP 360
              L +C S+   LP  +  +W+ + G  +L+  G TE + + +SN   GA K GT G P
Sbjct: 278 -SSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN-RPGAVKYGTSGKP 335

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRT 403
           +PG +VK+ +++    A G +GE+ V+  S    YW   +++R 
Sbjct: 336 VPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRE 379

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  145 bits (367), Expect = 3e-39
 Identities = 84/340 (24%), Positives = 132/340 (38%), Gaps = 76/340 (22%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++     EF+         G +AVP+  +    EL H++  S   +++       
Sbjct: 28  GDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIVV------ 81

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                      D A I+YTSGTTG PKG
Sbjct: 82  -------------------------------------------DTAAILYTSGTTGPPKG 98

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V+ TH  +    ++          D  L  LPL H++    ++ A L  GAT+  +P+FS
Sbjct: 99  VLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFS 158

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
               W + R+        A    T F  +  M   L++   + D             LR 
Sbjct: 159 ASRFWDQVRKH------GA----TVFNLLGAMAAILMKQPPSPD--------DRDHPLRF 200

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           +      LP  +   +E   G +L+E YGMTE  + I  P       G+ G P PGV+V+
Sbjct: 201 VFGA--PLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAP-GDPAPPGSCGRPRPGVEVR 257

Query: 368 IAEDESGSDAA--GVGEICVKS---PSLFKEYWKLPKESR 402
           I  DE G +     VGE+ V+     ++FK Y+ +P+ + 
Sbjct: 258 IV-DEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATA 296

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  144 bits (365), Expect = 5e-39
 Identities = 87/362 (24%), Positives = 141/362 (38%), Gaps = 50/362 (13%)

Query: 57  NENSAVLA------GGCGA--RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELL 108
           +E +  LA      GG G   R+ ++ + S E V  +L    +G   VPL  +YP   L 
Sbjct: 6   DERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLA 65

Query: 109 HVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKM--DG 166
            ++ D+   ++L+       L  +          +P +     E    D + A       
Sbjct: 66  FILEDAGARLLLTDSALASRLAGLV---------LPVILLDPLELAALDDAPAPPPPDAP 116

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
              +D A ++YTSG+TG+PKGVV TH+S+   +  L   +     D+ L    L     +
Sbjct: 117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASV 176

Query: 227 FNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
              +   L AGAT+   P+        +       +PV         T     P++   L
Sbjct: 177 E-EIFGALLAGATLVVPPEDEERDDAALLAALIAEHPV---------TVLNLTPSLLALL 226

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE--- 339
                       AA   A   LRL++ G  AL   ++ +W     G RL+  YG TE   
Sbjct: 227 A-----------AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTV 275

Query: 340 FVMAISNPLRGARKAGTV--GNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWK 396
           +  A       A +   V  G PL   ++ + +D+      GV GE+ +  P + + Y  
Sbjct: 276 WSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLN 335

Query: 397 LP 398
            P
Sbjct: 336 RP 337

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  144 bits (366), Expect = 3e-38
 Identities = 78/239 (32%), Positives = 115/239 (48%), Gaps = 28/239 (11%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ---FLHCLPLHHVHGL 226
           +D ALI+YTSGTTGKPKG   TH+++ A      +AW     D     L  LP+ H +GL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQ-GKAWVPGLGDGPERVLAALPMFHAYGL 277

Query: 227 -FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
                LA    G  +  +P   +  I    ++  P          T   GVP +Y ++ +
Sbjct: 278 TLCLTLAV-SIGGELVLLPAPDIDLILDAMKKHPP----------TWLPGVPPLYEKIAE 326

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAI 344
             E    +L          +R    G+ ALP+  ++ WE +TG  L+E YG+TE   + +
Sbjct: 327 AAEERGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV 378

Query: 345 SNPLRGARKAGTVGNPLPGVQVKIA--EDESGSDAAG-VGEICVKSPSLFKEYWKLPKE 400
            NP+   R+ G VG P P  +V+I   ED   +   G  GE+ V+ P +FK YW  P+E
Sbjct: 379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEE 437

Length = 573

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  139 bits (352), Expect = 3e-37
 Identities = 88/338 (26%), Positives = 123/338 (36%), Gaps = 96/338 (28%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++AK S EF+   L     G + +PL    P+ EL                    
Sbjct: 26  GDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQEEL-------------------- 65

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                           Q +       + PA I++TSG+TGKPK 
Sbjct: 66  -------------------------QQQLADLQPD------LDRPATIIFTSGSTGKPKA 94

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           VVHT  +  A  +   E    T  D +L  LPL HV GL   ++  L AG  +    KF 
Sbjct: 95  VVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFD 153

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              I     E++ V         T  + VPT   RL          L++  A     LR 
Sbjct: 154 AEAI-AEALENHGV---------THISLVPTQLQRL----------LESLGARWLSSLRA 193

Query: 308 MMCGSSALPLPVMQQ-----WETITGHRLLERYGMTEFVMA----ISNPLRGARKAGTVG 358
           ++ G + +P  +++Q                 YGMTE   A       P     K G+VG
Sbjct: 194 VLLGGAPIPPSLLEQARQRGIPLYPT------YGMTE--TASQVATLKPDDFLAKLGSVG 245

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            PLPG +++I            GEI V+ PSLF  Y  
Sbjct: 246 KPLPGRELRIVNP-------QDGEILVRGPSLFLGYLP 276

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  139 bits (353), Expect = 8e-37
 Identities = 111/404 (27%), Positives = 170/404 (42%), Gaps = 78/404 (19%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             Y++ Q+A  A RI++ L S  L+                  G RI I++K   E++  
Sbjct: 5   HEYTWAQVADQARRIAAALQSLGLEP-----------------GDRIAILSKNCAEWIIA 47

Query: 85  VLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVL--STEDYREVLQNVASKSGAK 139
            L  W +G ++VPL   YP      + +V+  SD   +     +D+  +   V       
Sbjct: 48  DLAIWMAGHVSVPL---YPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPE----- 99

Query: 140 FSLIPPVPNVSSETTVFDQSQA-----EKMDG---QRGEDPALIVYTSGTTGKPKGVVHT 191
             L   +    S      +        E + G      ED A IVYTSGTTG+PKGV+ +
Sbjct: 100 -GLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLS 158

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
             +     Q   E    T  D+ L  LPL H+          LY+GA V F     V  +
Sbjct: 159 FGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFF-----VESL 213

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY------EAMDTELQAASASAA--- 302
                +++  +  RA    T F  VP ++T+  QG       E ++  L+    S+    
Sbjct: 214 -----DTFAADLQRA--RPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKK 266

Query: 303 --------KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
                    Q RL   G++ +P  ++  +  + G  + E YGMTE     +    G R+ 
Sbjct: 267 KILKGLGLDQARLAGSGAAPMPPALIAWYRKL-GLPICEGYGMTENFAYSTLNYPGDRRI 325

Query: 355 GTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLP 398
           GTVG P+PGV++KI+ED         GEI ++SP L   Y+K P
Sbjct: 326 GTVGKPIPGVELKISED---------GEILIRSPGLMSGYYKDP 360

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  140 bits (354), Expect = 1e-36
 Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 50/392 (12%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y  L     R+++ L                   L G  G R+ I    S E V
Sbjct: 37  LFRELTYGDLRREVARLANAL-----------------KDLGGVKGDRVAIYMPNSPEAV 79

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
             +L T   G I   ++       +   + D    ++++ +      + +A    A  ++
Sbjct: 80  IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDAD-AV 138

Query: 143 IPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197
           +  V  V      +D      S+  + +    +DP  ++YTSGTTGKPKG+VH+H     
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 198 QVQMLTEAWEYTSADQFLHCL-PLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQR 254
           + ++  +                   ++GL+ ++ +PL +GAT        F        
Sbjct: 199 EHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWE 258

Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314
             E Y          +T F   PT   RL          ++           L + GS+ 
Sbjct: 259 ALEKY---------KVTIFGTSPTFLRRL----------MKLGLGEPYDLSSLRVLGSAG 299

Query: 315 LPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDE 372
            PL     + + +  G  +L+ YG TE  M         +   + G PLPG  V+  +DE
Sbjct: 300 EPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPPVKNGSS-GLPLPGYAVRRVDDE 358

Query: 373 SGSDAAGVGEICVKS--PSLFKEYWKLPKESR 402
                 GVGE+ V+   P +   YW  P+  +
Sbjct: 359 GNPVPPGVGELVVRLPWPGMALTYWNDPERYK 390

Length = 528

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  137 bits (346), Expect = 3e-36
 Identities = 102/395 (25%), Positives = 161/395 (40%), Gaps = 96/395 (24%)

Query: 17  SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             A    ++S +Y +L   A R +++L                   L    G R+ ++  
Sbjct: 1   KTAFYCGEQSLTYRELHDLANRFANVL-----------------RALGVSPGDRVLLLLP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S E VA  L    +G +AV L       +L H++ DS  +++            V    
Sbjct: 44  DSPELVAAFLACLKAGAVAVALNPLLTPQDLEHILDDSGAALL------------VTE-- 89

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID 196
                                            +D A  +YTSGTTGKPKGV+H H+   
Sbjct: 90  --------------------------------ADDIAYWLYTSGTTGKPKGVMHRHRDPL 117

Query: 197 AQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGI 251
              +    E       D+      L   +GL N+LL PL++GA+   +P +    +V  +
Sbjct: 118 TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDL 177

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
             R R              T   GVP +Y  L++          A SA   + +RL +  
Sbjct: 178 LARHRP-------------TVLFGVPALYRALLES--------GAGSAPLFRSVRLCVSA 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIA 369
             ALP  + ++W   TG  +L+  G TE   +   + P  GA + GT G P+PG + ++ 
Sbjct: 217 GEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRP--GAARPGTTGRPVPGYEARLV 274

Query: 370 EDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESR 402
            DESG +  AG VG++ V+ PSL   YW LP++++
Sbjct: 275 -DESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQ 308

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  136 bits (345), Expect = 4e-36
 Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 51/341 (14%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +V + S E V  +      G     L     E+E  + + D D+ ++L+      
Sbjct: 24  GSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD----- 78

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                     +         +         + +         +  A +++TSGTTGKPK 
Sbjct: 79  ----------SLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V HT ++  A      E   +T  D +L  LPL+H+ GL + L   L  GAT+  + KF+
Sbjct: 129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN 187

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                        +    A E +T  + VPT   RL+                  + LR 
Sbjct: 188 ------------QLLEMIANERVTHISLVPTQLNRLLD------------EGGHNENLRK 223

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPGV 364
           ++ G SA+P P++++ +   G  +   YGMTE    V   +  +  AR    VG PL G 
Sbjct: 224 ILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHAR--PDVGRPLAGR 280

Query: 365 QVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLS 405
           ++KI  D    +  G GEI VK  +L K Y     E     
Sbjct: 281 EIKIKVD----NKEGHGEIMVKGANLMKGYLY-QGELTPAF 316

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  137 bits (347), Expect = 6e-36
 Identities = 101/397 (25%), Positives = 159/397 (40%), Gaps = 46/397 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S SY +L +   R         L+    K +             R+ ++ 
Sbjct: 20  GKTAFIDDISSLSYGELEAQVRR-----LGAALRRLGVKREE------------RVLLLM 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F    LG   +G + V L       +  +++ DS   +V  + +   V++    K
Sbjct: 63  LDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK 122

Query: 136 SGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           S      +    P    V     +  +S+  K    + +DPA  +Y+SG+TG PKGVVHT
Sbjct: 123 SPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHT 182

Query: 192 HKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVR 249
           H +     ++           D       L   +GL NAL  P+  GAT   M  + +  
Sbjct: 183 HSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            ++ R R   P          T F GVPT        Y AM   L   +  A  Q+RL +
Sbjct: 243 AVFDRLRRHQP----------TIFYGVPT-------LYAAM---LADPNLPAEDQVRLRL 282

Query: 310 CGSSALPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           C S+   LP  V Q+W+   G  +++  G TE +    + L G  + GT G P+PG +++
Sbjct: 283 CTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLR 342

Query: 368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRT 403
           +  D     AAG  GE+ +  PS    YW    ++R 
Sbjct: 343 LVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRD 379

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  134 bits (339), Expect = 3e-35
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 23/228 (10%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           D AL++YTSGTTG+PKGV+HTH ++ A+V+   E    T  D  L   PL H+ G    L
Sbjct: 94  DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGL 153

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
             PL  GATV    ++      +  RE            +T   G       L+      
Sbjct: 154 ELPLLLGATVVLQDRWDPARALELIRE----------HGVTFTMGATPFLADLL------ 197

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR- 349
                 A+      LR+ +CG + +P  + ++     G +++  YGMTE  +        
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDD 255

Query: 350 -GARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
              ++A T G P+PGV+V+I  D+ G+D      GE+ V+ P LF  Y
Sbjct: 256 PDDKRAATDGRPVPGVEVRIV-DDDGNDVPPGEEGELQVRGPQLFLGY 302

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  131 bits (331), Expect = 1e-34
 Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 38/242 (15%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A   +T GTTG PK   H+H++  A   M          D  L+ LPL HV G   
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 229 ALLAPLYAGATV------EFMPKFSVRGIWQ---RWRESYPVNGNRAGEAITAFTGVPTM 279
             LAPL  GATV       F     V   W+   R+R             +T  + VPT+
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYR-------------VTLLSAVPTV 107

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
              L+Q        L  A  S    LR  + G++ LP+ V +++E +TG  ++E YGMTE
Sbjct: 108 LAALLQ------VPLGDADIS---SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTE 158

Query: 340 FVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE-DESGS-----DAAGVGEICVKSPSLFK 392
                + NP  G R+ G+VG  LP  +V++A+ D  G+         VG + ++ P++F 
Sbjct: 159 GTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFP 218

Query: 393 EY 394
            Y
Sbjct: 219 GY 220

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  133 bits (337), Expect = 2e-34
 Identities = 110/428 (25%), Positives = 168/428 (39%), Gaps = 87/428 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    ++ SY +L   A R++  L                        G R+ +  
Sbjct: 25  DKTAIVFYGRAISYRELLEEAERLAGYL----------------QQECGVRKGDRVLLYM 68

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +FV        +  + VP+     E EL H + DS   + +   +    +      
Sbjct: 69  QNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGN 128

Query: 136 SG------AKFS----------------LIPPVPNVSSETTVF------DQSQAEKMDGQ 167
                   A++S                  PP+  ++    V                  
Sbjct: 129 LRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG 188

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGL 226
             +D A++ YTSGTTG PKG +HTH+++ A   + +  W   T     L  LPL HV G+
Sbjct: 189 P-DDLAVLPYTSGTTGVPKGCMHTHRTVMANA-VGSVLWSNSTPESVVLAVLPLFHVTGM 246

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMY 280
            +++ AP+YAGATV  MP         RW RE+       A   I     T +T +PTM 
Sbjct: 247 VHSMNAPIYAGATVVLMP---------RWDREA-------AARLIERYRVTHWTNIPTMV 290

Query: 281 TRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
              +   G    D             LR +  G +A+P  V ++ + +TG   +E YG+T
Sbjct: 291 VDFLASPGLAERDL----------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLT 340

Query: 339 EFVMA--ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
           E  MA   SNP     K   +G P  GV  ++ + E+  +     VGEI V  P +FK Y
Sbjct: 341 E-TMAQTHSNP-PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGY 398

Query: 395 WKLPKESR 402
           W  P+ + 
Sbjct: 399 WNRPEATA 406

Length = 546

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  134 bits (339), Expect = 3e-34
 Identities = 75/243 (30%), Positives = 108/243 (44%), Gaps = 38/243 (15%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             +D A   +T GTTG PK   HTH +  A   +          D     LPL HV+ L 
Sbjct: 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALL 270

Query: 228 NALLAPLYAGATVEFMPKFSVRG------IW---QRWRESYPVNGNRAGEAITAFTGVPT 278
              LAPL  GA V        RG       W   +R+R             I   +GVPT
Sbjct: 271 VTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYR-------------INFLSGVPT 317

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +Y  L      +   +     S+   LR  +CG++ LP+ V +++E  TG R++E YG+T
Sbjct: 318 VYAAL------LQVPVDGHDISS---LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE-DESG-----SDAAGVGEICVKSPSLF 391
           E     S NP  G R+ G+VG  LP  +V++   D++G          VG +C+  P++F
Sbjct: 369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVF 428

Query: 392 KEY 394
             Y
Sbjct: 429 SGY 431

Length = 632

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  131 bits (333), Expect = 3e-34
 Identities = 88/392 (22%), Positives = 148/392 (37%), Gaps = 93/392 (23%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +S +Y +L   A R++  L                      G G  + I  
Sbjct: 2   DAVAVVFGDQSLTYRELNERANRLAHYL-----------------RARGVGPGDLVAICL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S E V  +L    +G   VPL  +YP   L +++ DS   ++L+  D           
Sbjct: 45  ERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----------- 93

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              D A ++YTSG+TG+PKGV+  H+ +
Sbjct: 94  -----------------------------------DLAYVIYTSGSTGRPKGVMVEHRGL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIW 252
              +  L E +  T+ D+ L          ++  +  PL +GAT+   P         + 
Sbjct: 119 VNLLAWLQERYGLTAGDRVLQFASFSFDASVW-EIFPPLLSGATLVLAPPEVLRDPEALA 177

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           +  RE            IT    VP++   L          L A   +A   LRL++ G 
Sbjct: 178 ELLRE----------HRITVLHLVPSLLRAL----------LDALEPAALPSLRLVIVGG 217

Query: 313 SALPLPVMQQW-ETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTV--GNPLPGVQVK 367
            ALP  ++++W E   G RL+  YG TE  + ++           G+V  G P+   +V 
Sbjct: 218 EALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVY 277

Query: 368 IAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
           + +++      GV GE+ +    + + Y   P
Sbjct: 278 VLDEDLRPVPVGVPGELYIGGAGVARGYLNRP 309

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  126 bits (317), Expect = 2e-31
 Identities = 91/390 (23%), Positives = 144/390 (36%), Gaps = 51/390 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +  +Y +L + A R++ LL S                 L  G G  + I+A
Sbjct: 242 DAVALVRGGQQLTYAELDARANRLARLLIS-----------------LGVGPGETVAILA 284

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E V  +L    +G   VPL   YP   L +++ DS  +++L+    R         
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRV-------- 336

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                  +     +S         QA       G+  A I+YTSG+TG+PKGV   H+++
Sbjct: 337 DDVGLPGLALDDALSEIPDTDPIPQALL-----GDALAYIIYTSGSTGQPKGVRIEHRAL 391

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +      +   + D+ L    L     +F  +   L  GA +   P           
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALL 450

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                       + IT    VP +   L      +   L     S  ++LR ++ G  AL
Sbjct: 451 ELL-------EAQGITVLLLVPLLLRLL------LLAALAPDLISPCERLRQLLSGGEAL 497

Query: 316 PLPVMQQWETI--TGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQVKIAED 371
           PL ++Q+   +     RLL  YG TE  +   +    A     V  G P+   Q+ I  D
Sbjct: 498 PLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYIL-D 556

Query: 372 ESGSDAA-GV-GEICVKSPSLFKEYWKLPK 399
           +       GV GE+ +    L   Y   P 
Sbjct: 557 QGLRPLPLGVPGELYIAGLGLALGYLNRPD 586

Length = 642

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  124 bits (313), Expect = 4e-31
 Identities = 97/400 (24%), Positives = 161/400 (40%), Gaps = 53/400 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +S++Y +L ++  R+++ L    LK                  G R+  + 
Sbjct: 26  DKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKK-----------------GDRVAALG 68

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S  +    L    +G + VP+       EL +++  S     L         +   + 
Sbjct: 69  HNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALAL 128

Query: 136 SGAKFSL----IPPVPNVSSETTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                 +    +             D     S AE       +D A I+YTSGT   PKG
Sbjct: 129 LPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKG 188

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            + TH+++ A+      A + ++ D  LH LPL+H   L   L   LY GAT   +    
Sbjct: 189 AMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPD 248

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              I +              E IT+F   PT++  L++  +    +L +        LR 
Sbjct: 249 PELILRTI----------EAERITSFFAPPTVWISLLRHPDFDTRDLSS--------LRK 290

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA----ISNPLRGARKAGTVGNPLP 362
              G+S +P+ V+++  E + G R    YG TE  +A    +  P    R+ G+ G P+ 
Sbjct: 291 GYYGASIMPVEVLKELRERLPGLRFYNCYGQTE--IAPLATVLGPEEHLRRPGSAGRPVL 348

Query: 363 GVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKE 400
            V+ ++  D+ G+D A G VGEI  +SP L   YW  P++
Sbjct: 349 NVETRV-VDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEK 387

Length = 523

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  123 bits (312), Expect = 4e-31
 Identities = 101/400 (25%), Positives = 158/400 (39%), Gaps = 54/400 (13%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+       +Y QLA    R      +                 L  G G  + ++
Sbjct: 26  PDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALL 68

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           +    E +  +     +G     L       +  +V+ D+ IS ++       E    +L
Sbjct: 69  SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
             V S      +L  PVP+         +   A  +      D A + YT GTTGKPKGV
Sbjct: 129 ARVPSLK-HVLTL-GPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGV 186

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           + TH+SI    Q+    WE+ +  +FL C PL H  G F   L  L  G TV  + KF  
Sbjct: 187 MGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDP 244

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + +   E          + ITA   VPTM   L+   +    +L +        L  +
Sbjct: 245 AEVLRAIEE----------QRITATFLVPTMIYALLDHPDLRTRDLSS--------LETV 286

Query: 309 MCGSSAL-PLPVMQQWETITGHRLLERYGMTEFVMAIS------NPLRGARKAGTVGNPL 361
             G+S + P+ + +  E   G    + YG TE  M I+      +     ++  + G P 
Sbjct: 287 YYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPT 345

Query: 362 PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKE 400
           PG++V + +++    A G VGEICV+ P +   YW  P+E
Sbjct: 346 PGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEE 385

Length = 524

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (310), Expect = 8e-31
 Identities = 103/375 (27%), Positives = 167/375 (44%), Gaps = 55/375 (14%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L    G R+ I+     + V G  GT  +G I V     Y E EL + +HDS   ++L  
Sbjct: 69  LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCL 128

Query: 123 EDYREVLQNVASKSGAKFSLIP------PVPN-----------------VSSETTVFDQS 159
           +     + NV S +  +  ++       P P                  VS   T+   +
Sbjct: 129 DLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWN 188

Query: 160 QAEK-------MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
             EK       +      D AL+ YT GTTG PKGV+ THK++ +   M  + W Y   +
Sbjct: 189 SVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-WLYNCKE 247

Query: 213 Q---FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
                L  LP  HV+G+   +   +  G  +  +PKF ++ +++  ++            
Sbjct: 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKK----------HK 297

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329
           +T F G PT+Y  L+      + ++ +        +R  + GS+ LP+ V +++ET+TG 
Sbjct: 298 VTLFPGAPTIYIALLNSPLLKEYDISS--------IRACISGSAPLPVEVQEKFETVTGG 349

Query: 330 RLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVK 386
           +L+E YG+TE   +  SN L   R  G++G P P  +  I   E+G       +GEI VK
Sbjct: 350 KLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVK 409

Query: 387 SPSLFKEYWKLPKES 401
            P + K YW  P+E+
Sbjct: 410 GPQIMKGYWNKPEET 424

Length = 563

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  122 bits (308), Expect = 1e-30
 Identities = 86/357 (24%), Positives = 148/357 (41%), Gaps = 41/357 (11%)

Query: 63  LAGGCGAR-------IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD 115
           LA G  AR       + +++  S EF    L    +G +       Y  +E+   + DS 
Sbjct: 45  LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104

Query: 116 ISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK-MDGQRGEDPAL 174
             + ++T +  E L ++A +                +    D+ +    +  Q  +D A 
Sbjct: 105 AKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQ--DDVAA 162

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCLPLHHVHGLFNALLA 232
           + Y+SGTTG+ KGV+ TH+++ A V  L          +   L  LP+ H++GL   LLA
Sbjct: 163 LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLA 222

Query: 233 PLYAGATVEFMPKFSVRG---IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            L  GATV  MP+F +       ++++             +T    VP +   L++    
Sbjct: 223 LLRLGATVVVMPRFDLEKFLAAIEKYK-------------VTHLPVVPPIVLALVKHPIV 269

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF--VMAISN 346
              +L          L+ +  G++ L   + + +     G  L + YGMTE   V  +  
Sbjct: 270 DKYDL--------SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCP 321

Query: 347 PLRGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKES 401
                 K G+VG  +P V+ KI + E+G        GE+ V+ P + K Y   P+ +
Sbjct: 322 VPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEAT 378

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  121 bits (307), Expect = 2e-30
 Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 37/246 (15%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G + +DPA+I++TSG+ G PKGVV +H+++ A +  +    +  + D  L  LPL H  G
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFG 200

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTMY 280
           L   LL PL  G  V + P               P++  +  E I     T   G PT  
Sbjct: 201 LTVTLLLPLLTGLRVVYYPN--------------PLDAKKIAELIRDYKATILCGTPTFL 246

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
               +GY         +S      LRL++ G+  LP    + +E   G R+LE YG TE 
Sbjct: 247 ----RGYARNAHPEDFSS------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATEC 296

Query: 341 --VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSPSLFKEYW 395
             V++++ P+    K GTVG PLPG++V+I   E+  +   +GE   + V+ P++   Y 
Sbjct: 297 SPVISVNTPM--GNKPGTVGRPLPGIEVRIVSPETHEELP-IGEGGLLLVRGPNVMSGYL 353

Query: 396 KLPKES 401
              +++
Sbjct: 354 NNEEKT 359

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  116 bits (293), Expect = 2e-29
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 23/237 (9%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A I+YTSG+TG+PKGV+ +H+++ A  + + +  E T  D+ L  LP    +GL +
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-S 59

Query: 229 ALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
            LL     G T+    +F+  R + +   +          E IT F GVPT + +L++  
Sbjct: 60  QLLTAFRVGGTLVLESRFAFPRDVLKHLAK----------ERITGFAGVPTTWAQLLR-- 107

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-FVMAIS 345
             +D   +    S    LR +     ALP   + Q        +L   YG+TE F     
Sbjct: 108 --LDPLAREDFPS----LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKES 401
            P    R+  ++G  +P V++ + +++    A G VGE+  +  ++ K YW  P+ +
Sbjct: 162 PPEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEAT 218

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  113 bits (286), Expect = 2e-27
 Identities = 102/426 (23%), Positives = 164/426 (38%), Gaps = 113/426 (26%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY ++   AL I S L +  LK                  G +IGI A+   E++    
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKP-----------------GDKIGIFAENRPEWIITEQ 48

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMV----LSTEDYREVLQNVASKSG--AKF 140
             +    + VPL  +  E  + +++++++IS+V    +    + E+      + G   K 
Sbjct: 49  ACFSQSLVIVPLYDTLGEEAIEYILNETEISIVFCDAVKVYSFEELE-----ELGKKNKV 103

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
              PP P                      ED A I+YTSGTTG PKGV+ TH +I A V 
Sbjct: 104 PPTPPKP----------------------EDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 201 MLTEAWEYTSADQFLHC--LPLHHVHGLFNALLAPLYAGATVEFMPKFS--VRGIWQRWR 256
            + +          ++   LPL H+       +  LY G  + +   +S   RG+    +
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVC-LYIGGRIGY---YSGDTRGLKGDIK 197

Query: 257 ESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---------ASAAKQ--- 304
           E  P          T F GVP +  R+   Y+ +  ++ A           A   K    
Sbjct: 198 ELKP----------TVFVGVPRVLDRI---YKGILAKVNAKGGLKRTLFNFAYNYKLAAL 244

Query: 305 --------------------------LRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                                     +RLM+ G + L     +      G  +L+ YG+T
Sbjct: 245 RRGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLT 304

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAGV---GEICVKSPSLFKEY 394
           E     +    G    G VG PLP  ++K+ +  E G  A      GEIC++ P++FK Y
Sbjct: 305 ETCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGY 364

Query: 395 WKLPKE 400
           +K P++
Sbjct: 365 YKNPEK 370

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  112 bits (283), Expect = 3e-27
 Identities = 107/410 (26%), Positives = 170/410 (41%), Gaps = 75/410 (18%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             + YSY +L     R ++L  S  ++      K +  A+    C         P F F 
Sbjct: 34  VVRRYSYLELNEEINRTANLFYSLGIR------KGDKVALHLDNC---------PEFIFC 78

Query: 83  AGVLGTWFS----GCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA 138
                 WF     G I VP+       E   ++ +S  S+++++  +  + + +  +   
Sbjct: 79  ------WFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT 132

Query: 139 KFSLI-------PPVPNVSSETTVFDQSQAEKMDGQR---GEDPALIVYTSGTTGKPKGV 188
               I       P    VSS T +  Q Q   +        +D A I++TSGTT +PKGV
Sbjct: 133 PLRHICLTRVALPADDGVSSFTQLKAQ-QPATLCYAPPLSTDDTAEILFTSGTTSRPKGV 191

Query: 189 VHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           V TH ++  +      AW+      D +L  +P  H+     A +A   AGAT   + K+
Sbjct: 192 VITHYNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249

Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ-L 305
           S R  W +  + Y     RA    T    +P M   L+         +Q  SA+  +  L
Sbjct: 250 SARAFWGQVCK-Y-----RA----TITECIPMMIRTLM---------VQPPSANDRQHCL 290

Query: 306 RLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNP 360
           R +M       L +  Q    +E   G RLL  YGMTE  V  I +     R+  ++G P
Sbjct: 291 REVM-----FYLNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRP 345

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVK---SPSLFKEYWKLPKES-RTLS 405
               + +I +D +    AG +GEIC+K     ++FKEY+  PK + + L 
Sbjct: 346 GFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE 395

Length = 517

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  111 bits (279), Expect = 1e-26
 Identities = 92/392 (23%), Positives = 162/392 (41%), Gaps = 65/392 (16%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI  ++K  ++ +L  + + ++  L +  +K                  G R+ ++ 
Sbjct: 17  DRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVK-----------------KGDRVALLM 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K   E +  +      G +AV L       ELL  + D+++  +++ +D+       A  
Sbjct: 60  KNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF------EAKL 113

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK-- 193
                     + N   E    +    E+ D    ++ A I+YTSGTTGKPKGV+ T+   
Sbjct: 114 IPGISVKFAELMNGPKE----EAEIQEEFDL---DEVATIMYTSGTTGKPKGVIQTYGNH 166

Query: 194 ---SIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              ++ + + + LTE       D +L  +P+ H+ GL + L+  +  G  V  + KF   
Sbjct: 167 WWSAVGSALNLGLTED------DCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAE 219

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            I +  +             +T  + V TM  RL++        L   +  ++   R M+
Sbjct: 220 KINKLLQTG----------GVTIISVVSTMLQRLLE-------RLGEGTYPSS--FRCML 260

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQVK 367
            G    P P+++Q +   G  + + YGMTE    I   +P     K G+ G PL   ++K
Sbjct: 261 LGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELK 319

Query: 368 IAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
           I +D         GEI VK P++ K Y     
Sbjct: 320 IEKDGVVVPPFEEGEIVVKGPNVTKGYLNRED 351

Length = 483

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  108 bits (272), Expect = 7e-26
 Identities = 78/387 (20%), Positives = 131/387 (33%), Gaps = 102/387 (26%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+     S +Y +L   A +++  L S                 L    G  + +  
Sbjct: 7   DAVAVDFWDGSLTYAELDRRANKLAHHLIS-----------------LGVRPGDIVALCL 49

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S      +L    +G   VP+  S P   L  ++ DS  ++VL++             
Sbjct: 50  ERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS------------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +DPA ++YTSG+TGKPKGVV TH++I
Sbjct: 97  --------------------------------SPDDPAYVIYTSGSTGKPKGVVITHRNI 124

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVRGI 251
              ++           D+ L    +      F+     +   L AG T+   P+      
Sbjct: 125 CNFLRAEGAILGIRPGDRVLQFASIA-----FDVSILEIFTTLLAGGTLVIPPEELRLED 179

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
              +     +N  R    +T     P++   L                     LR ++ G
Sbjct: 180 LAEF-----LNRLR----VTVAHLTPSLLALL--------------DPEDVPSLRTLILG 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIA 369
             A P  ++ +W      RLL  YG TE    ++         K   +G PLP     + 
Sbjct: 217 GEACPQALVDRW--SKPRRLLNTYGPTE--ATVTATASRLTPGKPVNIGRPLPNYTCWVL 272

Query: 370 EDESGSDAA--GVGEICVKSPSLFKEY 394
           + +         VGE+C+  P + + Y
Sbjct: 273 DPDLEPLVPIGAVGELCIGGPGVARGY 299

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  106 bits (266), Expect = 6e-25
 Identities = 97/377 (25%), Positives = 146/377 (38%), Gaps = 53/377 (14%)

Query: 49  KTTSEKTKNENSAVLAG-------GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
            TT+ +  ++  A LAG       G G R+ I+     EFV  VL     G IAVP+   
Sbjct: 41  NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV--SSETTVFDQS 159
               E+  ++ D    +V+ TE     L  VA+       L+  V     SS+ +V    
Sbjct: 101 LTPPEIAFLVSDCGAHVVV-TEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYE 156

Query: 160 QAEKMDGQR------GED-PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
                 G          D PALI+YTSGTTG+PKG V TH ++  Q              
Sbjct: 157 DLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINS 216

Query: 213 QFLHC-LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEA 269
                 +PL H+ G+ + +L  L  GA     P   F    +                E 
Sbjct: 217 DVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVL----------EAEK 265

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP---VMQQWETI 326
           +T    VP  +  +            A   +  + L L +    A P     + Q   T 
Sbjct: 266 VTGIFLVPAQWQAVC-----------AEQQARPRDLALRVLSWGAAPASDTLLRQMAATF 314

Query: 327 TGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE 382
              ++L  +G TE +  ++  L G    RK G+VG  +P V  ++ ++       G VGE
Sbjct: 315 PEAQILAAFGQTE-MSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGE 373

Query: 383 ICVKSPSLFKEYWKLPK 399
           I  ++P+L   YW  P+
Sbjct: 374 IVYRAPTLMSGYWNNPE 390

Length = 542

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  104 bits (263), Expect = 1e-24
 Identities = 82/389 (21%), Positives = 140/389 (35%), Gaps = 71/389 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L ++  R+++ L +  +                 G G R+ +V 
Sbjct: 30  DRTAVVDGPRRLTYRELDAAVDRLAAGLLALGI-----------------GPGDRV-LVQ 71

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P   EFV      +  G I V    ++   E+ H                       A 
Sbjct: 72  LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHF----------------------AR 109

Query: 135 KSGAKFSLIPPVPNVSSETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +S AK  +I          + FD  + A ++  +   D AL   + GTTG PK +  TH 
Sbjct: 110 QSEAKAYIIAD------RFSGFDYAALAREL-LEELPDVALFQLSGGTTGLPKLIPRTHN 162

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGIW 252
                 +   EA        +L  LP  H   L +  LL  L AG TV      S    +
Sbjct: 163 DYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAF 222

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
                          E +T    VP +    ++  E    +L +        LR++  G 
Sbjct: 223 PLIER----------EKVTHTALVPALLNLWLEAAEWDQADLSS--------LRVIQVGG 264

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPL-PGVQVKIAE 370
           + L   + ++ E   G  L + +GM E ++  +           T G P+ P  +++I +
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVD 324

Query: 371 DESGSDAAG-VGEICVKSPSLFKEYWKLP 398
           D+      G VGE+  + P   + Y++ P
Sbjct: 325 DQGEPVPPGEVGELLTRGPYTIRGYYRAP 353

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  103 bits (259), Expect = 3e-24
 Identities = 81/370 (21%), Positives = 132/370 (35%), Gaps = 85/370 (22%)

Query: 47  DLKTTSEKTKNENSAVLAGGC---GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP 103
           +LK  S++  N     L       G R+ ++     E  A +LG    G + +P      
Sbjct: 5   ELKEESDRAAN----FLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK 163
             ++ + +  +    ++++ D                                       
Sbjct: 61  PKDIRYRLERAGARAIVTSAD--------------------------------------- 81

Query: 164 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV 223
                  DPAL+ +TSGTTG PK V+HTH      +       +    D           
Sbjct: 82  -------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWA 134

Query: 224 HGLFNALLAPLYAGATVEF--MPKFSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            G +++L AP   GA V      +F       + +R+              +T F   PT
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYG-------------VTTFCAPPT 181

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y  L+Q         Q  S+     LR ++     L   V+  W   TG  + + YG T
Sbjct: 182 AYRMLLQ---------QDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQT 232

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK----SPSLFKE 393
           E  + ++N      K G++G P PG +V I +DE      G  G+I V+     P LF+ 
Sbjct: 233 ETGLLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRG 292

Query: 394 YWKLPKESRT 403
           Y K P+++  
Sbjct: 293 YLKDPEKTEA 302

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  104 bits (261), Expect = 3e-24
 Identities = 88/386 (22%), Positives = 157/386 (40%), Gaps = 81/386 (20%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLA--------LSYPESELLHVMHDS 114
           L    G R+  +A  +       L  +F    AVP                ++ ++++ +
Sbjct: 45  LGVKPGDRVATLAWNTHRH----LELYF----AVPGMGAVLHTLNPRLSPEQIAYIINHA 96

Query: 115 DISMVLSTEDYREVLQNVASK----------SGAKFSLIPPVPNVSSETTVFDQSQAEKM 164
           +  ++   +D+  +L+ +A +            A           + E  + ++S   + 
Sbjct: 97  EDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW 156

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHH 222
                   A + YTSGTTG PKGVV++H+S+        L ++   + +D  L  +P+ H
Sbjct: 157 PELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFH 216

Query: 223 VH--GLFNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
           V+  GL  A  A +  GA +        P   +  I                E +T   G
Sbjct: 217 VNAWGLPYA--ATM-VGAKLVLPGRYLDPASLLDLI--------------EEEKVTVSAG 259

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           VPT++  L+   EA   +L +        LR ++ G SALP  ++++ E   G  ++  +
Sbjct: 260 VPTIWLGLLNYLEANGKDLSS--------LRRVVVGGSALPRSLIEKLEER-GVEVIHAW 310

Query: 336 GMTEF--VMAISNP------------LRGARKAGTVGNPLPGVQVKIAEDESGS---DAA 378
           GMTE   +  +S              L    K G    P+PGV+++I +DE      D  
Sbjct: 311 GMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGR---PVPGVELRIVDDEGNELPWDGK 367

Query: 379 GVGEICVKSPSLFKEYWKLPKESRTL 404
            VGE+ V+ P +   Y+K P+++  L
Sbjct: 368 TVGELVVRGPWVTGSYYKDPEKTEEL 393

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  103 bits (259), Expect = 4e-24
 Identities = 99/429 (23%), Positives = 169/429 (39%), Gaps = 82/429 (19%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
           R+++ +R     Y++ QLA +  R++  L                   L    G R+GI 
Sbjct: 34  REALVVRHQALRYTWRQLADAVDRLARGL-----------------LALGVQPGDRVGIW 76

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           A    E++     T   G I V +  +Y  SEL + +  S +  V+      T DY  +L
Sbjct: 77  APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAML 136

Query: 130 QNVAS--KSGAKFSLIPP-----------VPNVSSETTVFD--QSQAEKMDGQR------ 168
           Q +      G   +L               P        +   Q++ E +  +       
Sbjct: 137 QELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQA 196

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               +DP  I YTSGTTG PKG   +H +I      + E+   T  D+    +PL+H  G
Sbjct: 197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG 256

Query: 226 LFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
           +  A L  +  GA +      F P  +++ +                E  TA  GVPTM+
Sbjct: 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAV--------------EEERCTALYGVPTMF 302

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE 339
              +   +  + +L +        LR  +   +  P+ VM++  + +    +   YGMTE
Sbjct: 303 IAELDHPQRGNFDLSS--------LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354

Query: 340 -----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393
                     ++ L   R+  TVG   P ++VK+ + +  +   G +GE+C +  S+ K 
Sbjct: 355 TSPVSLQTTAADDLE--RRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKG 412

Query: 394 YWKLPKESR 402
           YW  P+ + 
Sbjct: 413 YWNNPEATA 421

Length = 558

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  102 bits (256), Expect = 7e-24
 Identities = 77/397 (19%), Positives = 141/397 (35%), Gaps = 98/397 (24%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+     + +Y +L   A R+++ L                   L G  G  + + 
Sbjct: 5   PDRPALVVGGDTLTYAELKERADRLAARL-----------------LALGGRAGDPVAVY 47

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
              S +  A +L    +G   VPL  S P   +  ++  +  + +++  D          
Sbjct: 48  GHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD---------- 97

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                               D A I++TSG+TGKPKGV  +H +
Sbjct: 98  ------------------------------------DLAYILFTSGSTGKPKGVQISHAN 121

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPK--FSVR 249
           + + +  + E ++ T  D F +  P      V  LF AL     +GAT+  +PK   +  
Sbjct: 122 LASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPALA----SGATLYVIPKEQIADP 177

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
                + + +          +T +  VP+ +  L+     ++ E           LR  +
Sbjct: 178 LALFEFLKEHG---------LTVWVSVPS-FASLLLLSRELNPES-------LPSLRTFL 220

Query: 310 -CGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLP 362
            CG   LP  + +         R++  YG TE  +A     ++       +   +G P P
Sbjct: 221 FCG-EVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKP 279

Query: 363 GVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLP 398
           G++  I +++      G  GE+ +  P +   Y   P
Sbjct: 280 GLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNP 316

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  101 bits (254), Expect = 2e-23
 Identities = 91/319 (28%), Positives = 142/319 (44%), Gaps = 48/319 (15%)

Query: 96  VPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETT 154
           +P+AL + E  LL      D  +V   +++         K G   + IP  P  V+    
Sbjct: 131 LPMALKFLEKGLL------DRLIVCEDDNW--------GKVGTPQAPIPADPRIVTYADF 176

Query: 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EY 208
           V   +   +      +D AL+ YT GTTG PKG + TH ++ + V +  + W        
Sbjct: 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR 235

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE 268
              ++ +  LPL H++ L   LL  L  G  +    +F V  +++   E       RA  
Sbjct: 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEE------KRA-- 287

Query: 269 AITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV--MQQWETI 326
             T F GVPTM+  L     A D  L+    S+     L   GS   PLPV     +E  
Sbjct: 288 --TVFPGVPTMWIAL-----ANDPSLEKRDLSS-----LATIGSGGAPLPVEVANFFERK 335

Query: 327 TGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGVQVKIA--EDESGSDAAG-VGE 382
           TG +L   +GMTE       +P  G  K G++G  LPG+++ +   +D +     G VGE
Sbjct: 336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGE 395

Query: 383 ICVKSPSLFKEYWKLPKES 401
           + ++ P++ + YW  P+ES
Sbjct: 396 LRIRGPNVTRGYWNRPEES 414

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  100 bits (250), Expect = 9e-23
 Identities = 79/269 (29%), Positives = 114/269 (42%), Gaps = 57/269 (21%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           ED A I YTSGTTG PKGVV TH ++ A V   + + ++  +D  +  LPL H++   N 
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ 280

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           ++  L+ G  V F  +     +        P          T F  VP +Y R+   Y+ 
Sbjct: 281 IVM-LHYGVAVGFY-QGDNLKLMDDLAALRP----------TIFCSVPRLYNRI---YDG 325

Query: 290 MDTELQAAS---------ASAAKQ----------------------------LRLMMCGS 312
           +   ++ +          A  AK+                            +R M  G+
Sbjct: 326 ITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGA 385

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIA--- 369
           S L   VM+      G R+LE YGMTE    IS    G   +G VG+P P  +VK+    
Sbjct: 386 SPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVP 445

Query: 370 EDESGSDAAGV--GEICVKSPSLFKEYWK 396
           E    S+      GEICV+ P +FK Y+K
Sbjct: 446 EMNYTSEDQPYPRGEICVRGPIIFKGYYK 474

Length = 651

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 98.8 bits (247), Expect = 1e-22
 Identities = 87/397 (21%), Positives = 152/397 (38%), Gaps = 110/397 (27%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+R D ++ SY +L   + ++++ L +                 L  G G R+G++ 
Sbjct: 2   DAIALRDDDRTLSYAELDERSNQLAARLRA-----------------LGVGPGDRVGVLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + VA +L    +G   VPL  SYP   L +++ D++ +++L+              
Sbjct: 45  ERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT-------------- 90

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +D A ++YTSG+TGKPKGV  +H+++
Sbjct: 91  --------------------------------DPDDLAYVIYTSGSTGKPKGVEVSHRAL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA------------LLAPLYAGATVEFM 243
              +  +       ++D+ L             A            LL PL +GATV   
Sbjct: 119 VNFLLSMARRPGLGASDRLL-------------AVTTISFDISVLELLLPLLSGATVVIA 165

Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
              +VR            +  R    I       T    ++Q   A    L AA     +
Sbjct: 166 SAETVR------------DPERLARLIAD--ERIT----IMQATPATWRMLLAAGWRGRE 207

Query: 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLP 362
            L   +CG  ALP  + ++  + TG  L   YG TE  + +    +  A    T+G P+ 
Sbjct: 208 SLTA-LCGGEALPRDLAERLLS-TGAELWNMYGPTETTIWSTCARVTAADGPVTIGRPIA 265

Query: 363 GVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
             QV + +++      GV GE+ +    + + Y   P
Sbjct: 266 NTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRP 302

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 87/400 (21%), Positives = 150/400 (37%), Gaps = 120/400 (30%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           Y++ QL  ++ R+++ L    ++                  G R+G+    S E     L
Sbjct: 7   YTFGQLKDASNRLANALRELGVER-----------------GDRVGVYLPQSPETAIAHL 49

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
             +  G ++VPL++ +    + H + DS  + VL T+                       
Sbjct: 50  AVYKLGAVSVPLSVLFGPDAVEHRLRDSG-ARVLVTD----------------------- 85

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                                  +DPA+++YTSGTTG PKG +H H+ +   +  +   +
Sbjct: 86  ---------------------GSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 207 E---------YTSADQFLHCLPLHHVHGLFNALLAPLYAGATV------EFMPKFSVRGI 251
           E         +T AD          + GL + LL  LY G  V       F P+ +   +
Sbjct: 125 ELAPRPGDVFWTPAD-------WAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFA-L 176

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            +R+  +             AF  +P    ++++          +  A    +LR +  G
Sbjct: 177 MRRYGVT------------NAF--LPPTALKMMRRVG-------SERARYDLRLRAVASG 215

Query: 312 SSALPLPVMQQWETITGHRLL-----ERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQ 365
             +L    + +W        L     E YG TE  + + N    G  + G++G P+PG +
Sbjct: 216 GESLG-EELLEW----ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHE 270

Query: 366 VKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESR 402
           V + +D       G VGEI VK   P +F  YW  P+ + 
Sbjct: 271 VAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATA 310

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 99.2 bits (247), Expect = 2e-22
 Identities = 87/356 (24%), Positives = 142/356 (39%), Gaps = 48/356 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL------- 120
           G R+ +    + EFV  +L    +  + VPL  + P +E       +   +VL       
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH 127

Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
                T  +  +  NV   SG     +    + ++E T    S  E +      D A+I+
Sbjct: 128 DRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTP-ATSTPEGL----RPDDAMIM 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           +T GTTG PK V  TH +I + V+ +   +  +  D  +  +PL+H HGL  ALLA L +
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLAS 242

Query: 237 GATVEFMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           G  V  +P   +FS    W   +              T +T VPT++  L+   E   TE
Sbjct: 243 GGAV-LLPARGRFSAHTFWDDIKAV----------GATWYTAVPTIHQILL---ERAATE 288

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARK 353
               S      LR +   S+ L     Q  +T     ++  +GMTE    ++        
Sbjct: 289 ---PSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTT--TQIEG 343

Query: 354 AGTVGNPL---------PGVQVKIAEDESGS-DAAGVGEICVKSPSLFKEYWKLPK 399
            G   NP+          G Q++I   +     A  VGE+ ++  ++ + Y   P 
Sbjct: 344 IGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPT 399

Length = 534

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 98.6 bits (246), Expect = 4e-22
 Identities = 77/241 (31%), Positives = 111/241 (46%), Gaps = 48/241 (19%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED ALI++TSG+ G PKGVVH+HKS+ A V+ +    ++T  D+F+  LPL H  GL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              L  PL  GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFA-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EF--VMAISNPLRGARKAGTVGNPLPGVQ---VKIAEDESGSDAAGVGEICVKSPSLFKE 393
           E   V++I+ P+  A K GTVG  LPG+    + +   E G      G + +K P++   
Sbjct: 515 ECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGIEQG------GRLQLKGPNIMNG 566

Query: 394 Y 394
           Y
Sbjct: 567 Y 567

Length = 718

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 98.8 bits (247), Expect = 4e-22
 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 47/253 (18%)

Query: 170  EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
            +D A I+++SG+ G+PKGV+ +H +I + ++ +++ +   + D  L  LP  H  GL   
Sbjct: 782  DDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVT 841

Query: 230  LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPT---MYT 281
            L  PL  G  V + P               P +     + +     T   G PT   +Y 
Sbjct: 842  LWLPLLEGIKVVYHPD--------------PTDALGIAKLVAKHRATILLGTPTFLRLYL 887

Query: 282  RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
            R  +        L  AS      LRL++ G+  L   V   +E   G R+LE YG TE  
Sbjct: 888  RNKKL-----HPLMFAS------LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETS 936

Query: 341  -VMAISNP--------LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSP 388
             V +++ P         +   K G+VG PLPGV V+I + E+  +    GE   I +  P
Sbjct: 937  PVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELP-PGEDGLILIGGP 995

Query: 389  SLFKEYWKLPKES 401
             + K Y   P+++
Sbjct: 996  QVMKGYLGDPEKT 1008

Length = 1146

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.9 bits (244), Expect = 4e-22
 Identities = 92/380 (24%), Positives = 156/380 (41%), Gaps = 75/380 (19%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAV---PLALSYPESELLHVMHDS---------- 114
           G RI +      ++   V G   +G I V   PL   Y   E+ H  +DS          
Sbjct: 75  GDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPL---YTAREMEHQFNDSGAKALVCLAN 131

Query: 115 ------------DISMVLSTE------DYREVLQNVASKSGAKFSLIPP--VPNVSSETT 154
                        +  V+ TE        + +L N   K   K  ++P   +P       
Sbjct: 132 MAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKK--MVPAYHLPQAVKFND 189

Query: 155 VFDQSQAEKMD--GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWEYT 209
              +   + +     + +D A++ YT GTTG  KG + TH+++ A   Q + L  +    
Sbjct: 190 ALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE 249

Query: 210 SADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNG 263
             +  +  LPL+H++   F+ +   L     +       +P   V+ +  +W+       
Sbjct: 250 GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAM-VKEL-GKWK------- 300

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
                  + F G+ T++  L       +   +    SA   L+L + G  AL L   ++W
Sbjct: 301 ------FSGFVGLNTLFVALCN-----NEAFRKLDFSA---LKLTLSGGMALQLATAERW 346

Query: 324 ETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG 381
           + +TG  + E YGMTE    +S NP   A + GT+G P+P    K+ +D+      G VG
Sbjct: 347 KEVTGCAICEGYGMTETSPVVSVNP-SQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVG 405

Query: 382 EICVKSPSLFKEYWKLPKES 401
           E+CVK P + K YW+ P+ +
Sbjct: 406 ELCVKGPQVMKGYWQRPEAT 425

Length = 562

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 97.5 bits (243), Expect = 6e-22
 Identities = 85/346 (24%), Positives = 136/346 (39%), Gaps = 66/346 (19%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++     EF+   LG  + G IAVP+  +    +L H++ +S   +++       
Sbjct: 71  GDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA 130

Query: 128 VLQNV-----------------ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE 170
            L+                   +    A +S  P  P  +                 +  
Sbjct: 131 ALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA----------AVQPG 180

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGL 226
           D A I+YTSGTTG  KGV   H    AQ     +   E  E  + D     LPL H + L
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPH----AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL 236

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
            NA    L AGAT    P+FS  G W   R        R G  +T   G           
Sbjct: 237 -NAFFQALLAGATYVLEPRFSASGFWPAVR--------RHGATVTYLLG----------- 276

Query: 287 YEAMDTELQAASASAA-KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMA 343
             AM + L +  A  + +  R+ +     +P  +   +    G  LL+ YG TE  FV+A
Sbjct: 277 --AMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVIA 334

Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKS 387
           ++    G+++ G++G   PG + ++  DE   +      GE+ +++
Sbjct: 335 VT---HGSQRPGSMGRLAPGFEARVV-DEHDQELPDGEPGELLLRA 376

Length = 542

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 97.3 bits (242), Expect = 7e-22
 Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 42/248 (16%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA------DQFLHCLPLHHV 223
           +D A + YT GTTG  KG + TH+++ A +Q     W   +       +  +  LPL+H+
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ-AHQWLAGTGKLEEGCEVVITALPLYHI 266

Query: 224 HGLF-NALLAPLYAG-----ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
             L  N L+     G     +    MP F V+ + ++ R              TAFTGV 
Sbjct: 267 FALTANGLVFMKIGGCNHLISNPRDMPGF-VKEL-KKTR-------------FTAFTGVN 311

Query: 278 TMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           T++  L+   G++ +D             L++ + G  A+   V ++W+ +TG  L+E Y
Sbjct: 312 TLFNGLLNTPGFDQIDFS----------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAY 361

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393
           G+TE    A  NPL      G++G P+P     I +D     A G +GE+C+K P + K 
Sbjct: 362 GLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKG 421

Query: 394 YWKLPKES 401
           YWK P+E+
Sbjct: 422 YWKRPEET 429

Length = 560

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 91/408 (22%), Positives = 159/408 (38%), Gaps = 69/408 (16%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D+ A+    ++ +Y  L+   L ++S L    L                   G R+ I 
Sbjct: 14  PDATALVHHDRTLTYAALSERVLALASGLRGLGLAR-----------------GERVAIY 56

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E V  + G   +G + VP+       ++ H++ D ++ +++++ +  ++L     
Sbjct: 57  LDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP 116

Query: 135 K-----------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYT 178
                         A  S   P    +S    + +  A   D          D A I+YT
Sbjct: 117 GCHDLRTLIIVGDPAHASEGHPGEEPAS----WPKLLA-LGDADPPHPVIDSDMAAILYT 171

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SG+TG+PKGVV +H+++ A  Q +    E    D+ L  LPL   +G FN L    Y GA
Sbjct: 172 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGA 230

Query: 239 TV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
           TV      +P+  ++ + +                IT    VP ++ +L Q         
Sbjct: 231 TVVLHDYLLPRDVLKALEK--------------HGITGLAAVPPLWAQLAQ--------- 267

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE-FVMAISNPLRGAR 352
                SAA  LR +     A+P   + +  + +   RL   YG+TE F      P    R
Sbjct: 268 LDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDR 327

Query: 353 KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
           +  ++G  +P  +V +  ++    A G  GE+  +   +   YW  P+
Sbjct: 328 RPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPE 375

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.5 bits (238), Expect = 3e-21
 Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 40/249 (16%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAW------EYTSADQ--FLHCLP 219
            +D A + YT GTTG  KG    H++I A V QM  EAW      +    DQ  F+  LP
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM--EAWLQPAFEKKPRPDQLNFVCALP 260

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGV 276
           L+H+  L    LL  +  G     +P  + R I    +E   Y V+          F  V
Sbjct: 261 LYHIFALTVCGLLG-MRTGGRNILIP--NPRDIPGFIKELKKYQVH---------IFPAV 308

Query: 277 PTMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            T+Y  L+    ++ +D            +L +   G  A+  PV ++W  +TG  + E 
Sbjct: 309 NTLYNALLNNPDFDKLDF----------SKLIVANGGGMAVQRPVAERWLEMTGCPITEG 358

Query: 335 YGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK 392
           YG++E   +A  NP+     +GT+G PLP  +V I +D+      G  GEIC++ P +  
Sbjct: 359 YGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMA 418

Query: 393 EYWKLPKES 401
            YW  P E+
Sbjct: 419 GYWNRPDET 427

Length = 557

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 85/407 (20%), Positives = 148/407 (36%), Gaps = 83/407 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R++  L +  +                   G  + ++ 
Sbjct: 2   DAIALVYGDRSLTYAELNERANRLARRLRARGVGP-----------------GDVVALLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL------ 129
           + S E V  +L    +G   VPL  +YP   L  ++ DS   ++L+ E    +       
Sbjct: 45  ERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLP 104

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +  +        PP P V                    +D A ++YTSG+TG+PKGV 
Sbjct: 105 LVILEEELDAEDAGPPAPAVD------------------ADDLAYVMYTSGSTGRPKGVA 146

Query: 190 HTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFM 243
             H+ +   V+++           D+FL   PL      F+A    +   L  G  +  +
Sbjct: 147 VPHRGV---VRLVRNTNYIALDPDDRFLQLSPLS-----FDASTFEIWGALLNGGRLVLI 198

Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAASASA 301
            K               ++ +R    I    GV  ++    L         +L      A
Sbjct: 199 DK------------ETLLDPDRLARLIAEQ-GVTVLWLTAALFN-------QLVDEDPEA 238

Query: 302 AKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE-FVMAISNPLRGARKAGT--- 356
              LR ++ G   L    +++      G RL+  YG TE    +  + +    +A     
Sbjct: 239 LAGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIP 298

Query: 357 VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKESR 402
           +G P+P   V I ++E      GV GE+ V    L   Y   P+ + 
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTA 345

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 94.4 bits (235), Expect = 6e-21
 Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 40/247 (16%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH--------CLPL 220
            ED A + YT GTTG  KG + TH+++ A +        Y      LH         LPL
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL--EQAKAAYGP---LLHPGKELVVTALPL 259

Query: 221 HHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGVP 277
           +H+  L  N LL  +  G     +   + R I    +E   YP          TA TGV 
Sbjct: 260 YHIFALTVNCLLF-IELGGQNLLIT--NPRDIPGFVKELKKYPF---------TAITGVN 307

Query: 278 TMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM 337
           T++  L+   E    EL  +S      L+L + G  A+   V ++W  +TG  LLE YG+
Sbjct: 308 TLFNALLNNEEF--QELDFSS------LKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGL 359

Query: 338 TEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
           TE    +S NP      +G++G P+P  ++K+ +D+ G++      GE+ VK P +   Y
Sbjct: 360 TECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDD-GNEVPPGEPGELWVKGPQVMLGY 418

Query: 395 WKLPKES 401
           W+ P+ +
Sbjct: 419 WQRPEAT 425

Length = 560

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 95.0 bits (236), Expect = 8e-21
 Identities = 95/406 (23%), Positives = 153/406 (37%), Gaps = 77/406 (18%)

Query: 13   MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--AR 70
            M  D+VA+  D++  +Y +L   A R++  L                   +A G G    
Sbjct: 4563 MTPDAVAVVFDEEKLTYAELNRRANRLAHAL-------------------IARGVGPEVL 4603

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +GI  + S E + G+L    +G   VPL   YP   L ++M DS  +++L+      +LQ
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLT---QSHLLQ 4660

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTSGT 181
             +    G   SL                 + E  +G    DPA+         ++YTSG+
Sbjct: 4661 RLPIPDGLA-SL--------------ALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 182  TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            TG+PKGV  +H S+   +    E +E T  D+ L  +      G    L  PL  GA+V 
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSF-SFDGSHEGLYHPLINGASVV 4764

Query: 242  FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                     +W   R    ++ +R    +T     P    +L +  E  D E  +     
Sbjct: 4765 IRDD----SLWDPERLYAEIHEHR----VTVLVFPPVYLQQLAEHAER-DGEPPS----- 4810

Query: 302  AKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGT---- 356
               LR+   G  A+        W  +    L   YG TE  + +   L  AR        
Sbjct: 4811 ---LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVL--LWKARDGDACGAA 4865

Query: 357  ---VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
               +G PL      + + +      GV GE+ +    + + Y + P
Sbjct: 4866 YMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERP 4911

Length = 5163

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 93/391 (23%), Positives = 146/391 (37%), Gaps = 84/391 (21%)

Query: 61  AVLAG---GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           A+L     G G R+ +      +F     G    G + VP++  + E EL + ++D+   
Sbjct: 73  ALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAE 132

Query: 118 MVLSTEDYREVLQNVASKSG-------AKFSLIP-----PVPNVSSETTVFDQSQAEKMD 165
           ++L+ +    V++ V +++        +   ++P     P+P+      +      + + 
Sbjct: 133 VLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLP 192

Query: 166 GQRGE------------DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             R                A + YT GTTG PKG  HT +       M+  A    +   
Sbjct: 193 ALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR------DMVYTAAAAYAVAV 246

Query: 214 -------FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRA 266
                  FL  LP   + G    LL PL++GAT+  +          RW           
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLL---------ARW----------- 286

Query: 267 GEAITAFTGVP----TMYTRLIQGY-EAMDTELQAASASAAKQLRLMMCGSSALPL-PVM 320
            +A+     V     T    L+    E MD      +      LR +   S    L P  
Sbjct: 287 -DAVAFMAAVERYRVTRTVMLVDNAVELMDHP--RFAEYDLSSLRQVRVVSFVKKLNPDY 343

Query: 321 -QQWETITGHRLLE-RYGMTE------FVMAISN---PLRGARKAGTVGNPLPGVQVKIA 369
            Q+W  +TG  L E  +GMTE      F     +    L        VG P+PG + KI 
Sbjct: 344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQ--PVFVGLPVPGTEFKIC 401

Query: 370 EDESGS--DAAGVGEICVKSPSLFKEYWKLP 398
           + E+G        GEI V++PSL K YW  P
Sbjct: 402 DFETGELLPLGAEGEIVVRTPSLLKGYWNKP 432

Length = 567

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 48/353 (13%)

Query: 61  AVLAG-GC--GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           AVL   GC  G R+ ++A+ S   VA        G I VPL      SEL  ++ D++  
Sbjct: 37  AVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPR 96

Query: 118 MVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           ++L  +        VA+       L   + +  +            +  +R    +LI++
Sbjct: 97  LLLGDD-------AVAAGRTDVEDLAAFIASADALEPAD----TPSIPPER---VSLILF 142

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGT+G+PKGV+ + +++              +   FL   P+ H+ GL  ++   L  G
Sbjct: 143 TSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202

Query: 238 ATVE----FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
            ++     F PK ++       R   P  G      IT +  VP M  +  +     D  
Sbjct: 203 GSILVSNGFEPKRTLG------RLGDPALG------ITHYFCVPQM-AQAFRAQPGFD-- 247

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLR 349
                A+A + L  +  G +      +  W    G  +++ +GM+E    F M++ +   
Sbjct: 248 -----AAALRHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSEAGTVFGMSV-DCDV 300

Query: 350 GARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKES 401
              KAG  G P P VQ ++ +D+     AGV GE+ ++ P+L   YW+ P+ +
Sbjct: 301 IRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQAT 353

Length = 488

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 70/263 (26%), Positives = 104/263 (39%), Gaps = 49/263 (18%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D  LI +TSGTTG+PKGV  +H ++  Q         Y   D +LH  PL H+ GL +A
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            LA L  GA    +PKF  +   Q  ++            +T+   VP M   LI     
Sbjct: 232 -LAMLMVGACHVLLPKFDAKAALQAIKQ----------HNVTSMITVPAMMADLI----- 275

Query: 290 MDTELQAASASAA--KQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE------- 339
               L   S +      +R ++ G  +L   ++    +     +L   YGMTE       
Sbjct: 276 ---SLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTF 332

Query: 340 ---------------FVMAISNPLRGARKAGT-VGNPLPGVQVKIAEDESGSDAAGVGEI 383
                            +  +      +  G  VG P P V++KI  DES      VG I
Sbjct: 333 MTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSR----VGRI 388

Query: 384 CVKSPSLFKEYWKLPKESRTLSS 406
             + P +   YW    E+ ++ S
Sbjct: 389 LTRGPHVMLGYWGQNSETASVLS 411

Length = 563

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 93.1 bits (231), Expect = 2e-20
 Identities = 70/236 (29%), Positives = 105/236 (44%), Gaps = 29/236 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ + +    E  E    D  L   P+ H  G    
Sbjct: 195 DDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG 254

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP-TMYTRLIQGYE 288
           L+ PL   AT        ++ IW         N  RA E I   TGV  TM         
Sbjct: 255 LMMPLILNATA------VLQDIW---------NPARAAELIRE-TGVTFTM------AST 292

Query: 289 AMDTELQAA---SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAI 344
              T+L  A   S +    L   +C  + +P  ++++   + G  ++  +GMTE   + +
Sbjct: 293 PFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTV 352

Query: 345 SNPLRGARKAGTV-GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLP 398
           + P     KA T  G PLPGV+VK+ +      + G  G + V+  S F  Y K P
Sbjct: 353 TEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRP 408

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 91/398 (22%), Positives = 156/398 (39%), Gaps = 55/398 (13%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M + K   K  S+  + +AI+ + +  +Y     S  ++++ L         +++KN+  
Sbjct: 1   MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWL-------NEKESKNK-- 51

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     I I+ +   EF+    G   +G   VPL + + + EL   +  S+  M++
Sbjct: 52  ---------TIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV 102

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
            TE Y+  L ++  + G    +      +      +    A   + Q    P  + +TSG
Sbjct: 103 -TERYK--LNDLPDEEGRVIEIDEWKRMIEKYLPTY----APIENVQ--NAPFYMGFTSG 153

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +TGKPK  +   +S           +     D  L    L H   L+ A+   LY G TV
Sbjct: 154 STGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST-LYVGQTV 212

Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
             M KF    +  +             E I+    VPTM   L +    ++ +++  S S
Sbjct: 213 HLMRKFIPNQVLDKLE----------TENISVMYTVPTMLESLYKENRVIENKMKIIS-S 261

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTV 357
            AK                 ++ + I  + +L E YG +E  FV A+       R+  +V
Sbjct: 262 GAK-----------WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALV-DEESERRPNSV 309

Query: 358 GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394
           G P   VQV+I  +       G +G + VKSP  F  Y
Sbjct: 310 GRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGY 347

Length = 487

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 23/238 (9%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ A +    E     + D  L   P+ H  G    
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYG 256

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L+ P+  GAT        ++ IW   R +  +      E +T FT   T +         
Sbjct: 257 LMMPVMLGATA------VLQDIWDPARAAELI----RTEGVT-FTMASTPF--------L 297

Query: 290 MD-TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNP 347
            D T     S      LR  +C  + +P  ++++     G +++  +GMTE   + ++  
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL 357

Query: 348 LRGARKAGTV-GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRT 403
                +A T  G PLPGV+V++ + +     AG +G + V+  S F  Y K P+ + T
Sbjct: 358 DDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT 415

Length = 547

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 89.2 bits (222), Expect = 3e-19
 Identities = 87/398 (21%), Positives = 144/398 (36%), Gaps = 76/398 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+     + +Y +LA  A  I++ L                        G  + +V 
Sbjct: 2   DATAVIDGAGTLTYGELARRANAIAAAL-------------RAAGV----APGDLVAVVM 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
              +E +  VLG   +G   VP+    P      ++  +    VL+     +        
Sbjct: 45  PKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQ-------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG----EDPALIVYTSGTTGKPKGVVHT 191
                    P           D + AE           +D A +++TSG+TG+PKGV+ T
Sbjct: 97  ---------PEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT 147

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHH---VHGLFNALLAPLYAGATVEFMPKFSV 248
           H++    +  +   +    AD+ L    LH    V+ +F AL     AGA +    +   
Sbjct: 148 HRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFGALS----AGAALVLPDEARR 203

Query: 249 RGI--WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA--SASAAKQ 304
           R    W    + + V         T +  VP +          MD  L  A  +A     
Sbjct: 204 RDPDHWAELVQRHGV---------TVWNSVPAL----------MDMLLTYAEDAARLLPS 244

Query: 305 LRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGA-RKAGTV--GN 359
           LRL+M     +PL + ++      G RL+   G TE  + +I  P+        ++  G 
Sbjct: 245 LRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSIYYPIDDVDPDWRSIPYGK 304

Query: 360 PLPGVQVKIAEDESGSDAA-GV-GEICVKSPSLFKEYW 395
           PLP  +  +  DE G D    V GE+ +    +   YW
Sbjct: 305 PLPNQKFYVL-DEDGRDCPDWVPGELYIGGVGVALGYW 341

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 80/349 (22%), Positives = 137/349 (39%), Gaps = 56/349 (16%)

Query: 69   ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
              +GI  + S E V G+L    +G   VPL   YP   L +++ DS I ++L+      +
Sbjct: 1625 VLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ---SHL 1681

Query: 129  LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTS 179
               +    G               + V DQ     ++G    +PA+         ++YTS
Sbjct: 1682 QARLPLPDGL-------------RSLVLDQEDDW-LEGYSDSNPAVNLAPQNLAYVIYTS 1727

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYA 236
            G+TG+PKG  + H ++  ++    EA++ ++AD  L          V  LF     PL  
Sbjct: 1728 GSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF----WPLIN 1783

Query: 237  GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
            GA +   P     G  +   +   +      + +T    VP+M  +L+Q           
Sbjct: 1784 GARLVIAPP----GAHRDPEQLIQL---IERQQVTTLHFVPSMLQQLLQ---------MD 1827

Query: 297  ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMAISN-PLRGA--- 351
                    LR ++CG  AL +  ++ W E +    L   YG TE  + +++   R     
Sbjct: 1828 EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887

Query: 352  -RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
             R +  +G P+  +   I +        GV GE+ +    L + Y   P
Sbjct: 1888 GRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRP 1936

Length = 3956

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 88.7 bits (221), Expect = 5e-19
 Identities = 103/388 (26%), Positives = 157/388 (40%), Gaps = 88/388 (22%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE---- 123
           G R+GI A    E+V     T   G I V +  +Y  SEL + ++ S    +++ +    
Sbjct: 68  GDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD 127

Query: 124 -DYREVLQNVA-----SKSGA------------------KFSLIPPVPNVSSETTVFDQS 159
            DY  +L  +A      + G                   K   +     + +     D +
Sbjct: 128 SDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDA 187

Query: 160 Q-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL 218
           + A +      +DP  I YTSGTTG PKG   TH++I      + EA + T  D+    +
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV 247

Query: 219 PLHHVHGLFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
           PL+H  G+    LA +  GAT+      F P  ++  + +              E  TA 
Sbjct: 248 PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEE--------------ERCTAL 293

Query: 274 TGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL-MMCGSSALPLPVMQQWE----- 324
            GVPTM+   I    A       A    +S    LR  +M GS   P+ VM++       
Sbjct: 294 YGVPTMF---I----AELDHPDFARFDLSS----LRTGIMAGSPC-PIEVMKRVIDKMHM 341

Query: 325 ---TITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD 376
              TI        YGMTE           +PL   ++  TVG  LP ++VKI + E+G  
Sbjct: 342 SEVTIA-------YGMTETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGET 392

Query: 377 AA-GV-GEICVKSPSLFKEYWKLPKESR 402
              G  GE+C +  S+ K YW  P+++ 
Sbjct: 393 VPRGEQGELCTRGYSVMKGYWNDPEKTA 420

Length = 559

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 87.9 bits (218), Expect = 8e-19
 Identities = 92/408 (22%), Positives = 155/408 (37%), Gaps = 61/408 (14%)

Query: 14  ARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
             D +A+  +   SY+Y  L  +A R+++ L +  ++                  G R+ 
Sbjct: 36  MPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEP-----------------GDRVA 78

Query: 73  IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---- 128
                  EF    L     G ++VPL  S+ E+EL+ V++     M  +   +++     
Sbjct: 79  FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVD 138

Query: 129 ----LQN-VASKSGAKF--SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
               LQN +           L P   ++S    + D           G++ A +++TSGT
Sbjct: 139 LILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGT 198

Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV- 240
            G PKGV+ TH +I A  +        T  D F+   PL H  G  + + AP   GA   
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258

Query: 241 ---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
               F P   +  +             +  +  T   G       L+   E    +L A 
Sbjct: 259 LLDIFTPDACLALL------------EQ--QRCTCMLGATPFIYDLLNLLEKQPADLSA- 303

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRG--ARKA 354
                  LR  +CG + +P  V ++  +   G +LL  YG TE        L    +R  
Sbjct: 304 -------LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPLSRFM 354

Query: 355 GTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKES 401
            T G    GV++K+ ++   +   G  GE   + P++F  Y   P+ +
Sbjct: 355 HTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELT 402

Length = 547

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 62/272 (22%), Positives = 102/272 (37%), Gaps = 69/272 (25%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           + +DPA I++TSG+TG PKGVV+TH++  AQ+  L   +     D+ L   P      LF
Sbjct: 83  KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF 139

Query: 228 NALL--------------APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              L              A L      + +                     R   A   F
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAI---------------------REIGASCVF 178

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRL 331
            G P +   + +  E    +L +        LR ++   + +P  +++++         +
Sbjct: 179 -GSPALLKNVARYCEENGIQLPS--------LRRVLSAGAPVPPDLLRRFVANLMPEAEI 229

Query: 332 LERYGMTEF----------VMAISNPLRGARKAGTVGNPLPGVQVKIAE----------D 371
              YG TE           V+A S     A     VG+P+PG+ V+I            D
Sbjct: 230 HTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDD 289

Query: 372 ESGSDAAGVGEICVKSPSLFKEYWKLPKESRT 403
           +       VGEI V  P + +EY+  P+ ++ 
Sbjct: 290 DIELPPGEVGEIIVSGPHVTREYYNRPEATKL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 52/252 (20%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCLPLHHVHG---LF 227
           A  ++TSG+TG PK V++TH+ + A   M+ + W + + +    +  LP +H  G    F
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNF 226

Query: 228 NALLA---PLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           N +L     LY   G  V  + + ++R +    RE  P          T +  VP     
Sbjct: 227 NMVLYNGGTLYIDDGKPVPGLFEETLRNL----REVSP----------TVYFNVP----- 267

Query: 283 LIQGYEAMDTELQAASASAA---KQLRLMMCGSSALPLPVMQQWETI-------TGHR-- 330
             +G+E +   L+  +A      K+LRL+    +ALP  V   W+ +       TG R  
Sbjct: 268 --KGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDV---WDRLQALAVRTTGERIP 322

Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
           +    G TE     +       ++G +G P PG ++K+          G  E+ VK P++
Sbjct: 323 MTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLVP------NGGKLEVRVKGPNV 376

Query: 391 FKEYWKLPKESR 402
              YW+ P+ + 
Sbjct: 377 TPGYWRDPELTA 388

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 34/243 (13%)

Query: 163  KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
                +  +DPA+I++TSG+ G PKGVV +H+++ A    +    +++  D+  + LP+ H
Sbjct: 786  YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Query: 223  VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
              GL   L+ PL +G  V   P               P++     E I   T    ++  
Sbjct: 846  SFGLTGGLVLPLLSGVKVFLYPS--------------PLHYRIIPELIYD-TNATILF-- 888

Query: 283  LIQGYEAMDTELQAASASAA----KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                    DT L   +  A     + LR +  G+  +     Q W    G R+LE YG+T
Sbjct: 889  ------GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVT 942

Query: 339  EF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            E   V+A++ P+    KAGTVG  LPG++ ++ E   G D    G + V+ P++   Y +
Sbjct: 943  ETAPVIALNTPM--HNKAGTVGRLLPGIEYRL-EPVPGIDEG--GRLFVRGPNVMLGYLR 997

Query: 397  LPK 399
               
Sbjct: 998  AEN 1000

Length = 1140

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 87.3 bits (216), Expect = 3e-18
 Identities = 80/332 (24%), Positives = 124/332 (37%), Gaps = 49/332 (14%)

Query: 14   ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
            A +++A+    +  SY +L S A R++  L +                    G   R+ I
Sbjct: 2016 APEAIAVVFGDQHLSYAELDSRANRLAHRLRA-----------------RGVGPEVRVAI 2058

Query: 74   VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             A+ SFE V  +L    +G   VPL  +YP   L +++ DS  +++L+     E L   A
Sbjct: 2059 AAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA 2118

Query: 134  SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHT 191
                        V  +  +         +     +  GE+ A ++YTSG+TG PKGV  +
Sbjct: 2119 G-----------VARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167

Query: 192  HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
            H ++ A  Q   E +E + AD  L  +      G       PL  GA V       +R  
Sbjct: 2168 HGALVAHCQAAGERYELSPADCELQFMSF-SFDGAHEQWFHPLLNGARV------LIRDD 2220

Query: 252  WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
                 E       R G  I  F   P    +L +          A        +R+   G
Sbjct: 2221 ELWDPEQLYDEMERHGVTILDF--PPVYLQQLAE---------HAERDGRPPAVRVYCFG 2269

Query: 312  SSALPLPVM-QQWETITGHRLLERYGMTEFVM 342
              A+P   +   WE +    L   YG TE V+
Sbjct: 2270 GEAVPAASLRLAWEALRPVYLFNGYGPTEAVV 2301

Length = 5163

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 84.9 bits (210), Expect = 7e-18
 Identities = 76/347 (21%), Positives = 141/347 (40%), Gaps = 41/347 (11%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G G  + ++ K S  F+       + G + +P+       E+ +++ D+   ++L  E++
Sbjct: 50  GQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTG 183
             ++     K       I       +++    Q   E          D   ++YTSGTT 
Sbjct: 110 DAIVALETPK-------IVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTD 162

Query: 184 KPKGVVHTH-----KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +PKGV+H++     KSID        A   T++++ L   PL+HV       +A L+ G 
Sbjct: 163 RPKGVMHSYGNLHWKSIDH-----VIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           T+    +F          +   V        +T     P M +R++   +    +L +  
Sbjct: 218 TLRIHREF----------DPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS-- 265

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA--ISNPLRGARKAG 355
                 L   + G    P   ++ +    T  R ++ YG+TE      +    R   K G
Sbjct: 266 ------LAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319

Query: 356 TVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKES 401
           + G  L  V+++IA+         + GEIC++ P + K YWK P+++
Sbjct: 320 STGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKT 366

Length = 497

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 82/348 (23%), Positives = 135/348 (38%), Gaps = 50/348 (14%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI  + S E V G+L    +G   VPL   YP+  L +++ DS + ++L+    
Sbjct: 560 GPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL 619

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP---------ALIV 176
              L               PVP     +   D+     + G  G +P         A ++
Sbjct: 620 LAQL---------------PVP-AGLRSLCLDEPADL-LCGYSGHNPEVALDPDNLAYVI 662

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSG+TG+PKGV  +H ++   V ++ E  +  + D  L              L   L +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTF-AFDLGVTELFGALAS 721

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           GAT+  +P    R                A + +T    VP+    L          LQA
Sbjct: 722 GATLHLLPPDCARDAEAFAALM-------ADQGVTVLKIVPSHLQAL----------LQA 764

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMAISN-PLRGA--- 351
           +  +  +  R ++CG  AL + ++ +      G RL+  YG TE  + +S   L      
Sbjct: 765 SRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERD 824

Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
                +G PL  + + I +        GV GE+ +    L + Y + P
Sbjct: 825 FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRP 872

Length = 3956

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 84/385 (21%), Positives = 144/385 (37%), Gaps = 90/385 (23%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
            S SY QL      ++  L +  +K                    RI +    S ++V  
Sbjct: 1   DSLSYQQLWQEVDLLAEQLRALGVK--------------------RIALALDNSIDWVIA 40

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST--EDYREVLQNVASKSGAKFSL 142
            L    +G + +P+   +   +  H+++D+   +++S   +    +    A+     +  
Sbjct: 41  DLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASALHTPFATLGEDLYIA 100

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           + P  N      +                 A I YTSG+TG+PKGV  +  +++   Q L
Sbjct: 101 LRPSAN---PVELP-------------AGTAKITYTSGSTGQPKGVCLSAAALETVAQSL 144

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNA--LLAPLYAGATVEFMP----------KFSVR- 249
            EA      ++ L  LPL  +  L N   + APL  GATV  +P                
Sbjct: 145 AEAIAILEPERHLCLLPLATL--LENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQ 202

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                 RW+               +   VP +   L+                  + LR 
Sbjct: 203 FVAALSRWQ-------------PHSLILVPQLLMALVA--------AVEQGPLPPESLRF 241

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQ 365
           +  G + +   ++Q+   + G  + E YG++E   V++++ P  GA + G+VG PLP VQ
Sbjct: 242 VAVGGARVSPSLLQRARAL-GLPVYEGYGLSECASVVSLNTP--GADRPGSVGKPLPHVQ 298

Query: 366 VKIAEDESGSDAAGVGEICVKSPSL 390
           V IA D         GEI V+   +
Sbjct: 299 VSIAND---------GEILVRGSLM 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 60/268 (22%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCL 218
                    +  A  ++TSG+TG PK V++TH+ + A  QML + + + + +    +  L
Sbjct: 200 DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWL 259

Query: 219 PLHHVHG---LFNALLA---PLY--AGA-TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
           P +H  G       +L     LY   G  T     + ++R +    RE  P         
Sbjct: 260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDE-TLRNL----REISP--------- 305

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---QLRLMMCGSSALPLPVMQQWETI 326
            T +  VP        G+E +   L+  +A   +   +L+L+    +AL   V   W+ +
Sbjct: 306 -TVYFNVPK-------GWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDV---WDRL 354

Query: 327 -------TGHR--LLERYGMTE---FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESG 374
                   G R  ++   GMTE        + P     +AG +G P PG +VK+      
Sbjct: 355 DRVAEATCGERIRMMTGLGMTETAPSATFTTGP---LSRAGNIGLPAPGCEVKLV----- 406

Query: 375 SDAAGVGEICVKSPSLFKEYWKLPKESR 402
               G  E+ VK P++   YW+ P+ + 
Sbjct: 407 -PVGGKLEVRVKGPNVTPGYWRAPELTA 433

Length = 614

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 37/245 (15%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ----------FLHCLP 219
           +D A++ YT GTTG  KG + TH ++ A +  +         D            +  LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGI---WQRWRESYPVNGNRAGEAITAFTG 275
           L+H++    N +   +     V       + G      +WR              +A  G
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWR-------------FSALLG 313

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           + T++  L+      D +  A        L+L   G +AL     ++WE +TG  ++E Y
Sbjct: 314 LNTLFVALMDHPGFKDLDFSA--------LKLTNSGGTALVKATAERWEQLTGCTIVEGY 365

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKE 393
           G+TE   +A +NP     + GTVG P+PG  +K+ +D+      G  GE+C+K P + K 
Sbjct: 366 GLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKG 425

Query: 394 YWKLP 398
           YW+ P
Sbjct: 426 YWQQP 430

Length = 562

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 81.9 bits (203), Expect = 7e-17
 Identities = 75/371 (20%), Positives = 134/371 (36%), Gaps = 83/371 (22%)

Query: 88  TWFSGC-----IAVPLAL--SYPES--ELLHVMHDSDISMVLSTEDYREVLQNVASKSG- 137
           T F  C     + VP+A+  +Y E    +  + +      +        +L + A  +  
Sbjct: 79  TAFWACVLGGFVPVPVAVPPTYDEPNAAVAKLRN------IWELLGSPVILTDAALVAAL 132

Query: 138 ---AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                 + +  +  V +   +        +   R +DPAL++ TSG+TG PK VV TH++
Sbjct: 133 AGLRTRAGLEALR-VLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRN 191

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG----------------- 237
           I A+     +   +T  D  L+ +PL HV G+    L  +Y G                 
Sbjct: 192 ILARSAGTVQVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLR 251

Query: 238 ---------ATVEFMPKFSV--------RGIWQRWRES---YPVNGNRAGEAITAFTGVP 277
                     T+ + P F+         R   + W  S   Y +N    GEA+ A T   
Sbjct: 252 WLDLIDRYRVTITWAPNFAFALLNDALERIEDRSWDLSSLRYIINA---GEAVVAKTIRR 308

Query: 278 TMYTRLIQGYEAMDTELQAA-----SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLL 332
            +   L+  Y      ++ A     + S     R    G     + V      +      
Sbjct: 309 FL--ELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLR-FAAA 365

Query: 333 ERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF 391
           +      FV               +G P+PGV ++I +++      G VG + V+ P++ 
Sbjct: 366 DHPEAVTFV--------------ELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVT 411

Query: 392 KEYWKLPKESR 402
             Y++ P+ + 
Sbjct: 412 SGYYRNPEANA 422

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 82.2 bits (203), Expect = 7e-17
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 41/249 (16%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EA--WEYTSADQ-FLHCLPLHH 222
           + +D A I+Y+SGTTG  KGVV TH+++ A V++    EA  +EY  +D  +L  LP+ H
Sbjct: 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFH 255

Query: 223 VHGLFNALLAPLYAGATVEFMPKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           ++GL   ++  L  G+T+  M +F     V+ I  R++             +T F  VP 
Sbjct: 256 IYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI-DRFK-------------VTHFPVVPP 301

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
           +   L +       + +       K L+ + CG++ L    +Q + +T+     ++ YGM
Sbjct: 302 ILMALTK-------KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354

Query: 338 TEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSL 390
           TE   + +   RG       K  +VG   P +Q K+ +  +G        GE+ ++ P +
Sbjct: 355 TE---STAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGV 411

Query: 391 FKEYWKLPK 399
            K Y   PK
Sbjct: 412 MKGYLNNPK 420

Length = 560

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 42/171 (24%)

Query: 81  FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF 140
           F A +LG    G I VPL+                     +T++++  L  V +     F
Sbjct: 57  FWACILG----GIIPVPLS-------------------YGNTDEHKLKLLRVWNILNNPF 93

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
            LI             D+     +     +D A I ++SG+TG+PKGV+ THK++   ++
Sbjct: 94  -LI------------TDRDSLLSLP----DDIAFIQFSSGSTGEPKGVILTHKNLLTNIE 136

Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVR 249
            + EA E TS D FL  +PL H  GL    L P   G     MP   F  R
Sbjct: 137 AIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR 187

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 68/240 (28%), Positives = 97/240 (40%), Gaps = 34/240 (14%)

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL--PLHH 222
           D  R +DP L+ +TSGTTG PK V+HTH S      + T  W           +  P   
Sbjct: 79  DETRADDPILLYFTSGTTGLPKLVLHTHVSYPVG-HLSTMYWIGLQPGDIHLNISSPGWA 137

Query: 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
            H  +++  AP  AGATV  +  P+F  R       +            +T F   PT++
Sbjct: 138 KHA-WSSFFAPWNAGATVFGINYPRFDARRYLGALEKF----------GVTTFCAPPTVW 186

Query: 281 TRLIQ-GYEAMDTELQAASASAAKQLRLMMCGSSALPLP-VMQQWETITGHRLLERYGMT 338
              IQ      D  L+ A  SA + L            P V+++ +   G  + + YG T
Sbjct: 187 RMFIQQDLAQYDVRLREA-VSAGEPLN-----------PEVIERVKKAWGLTIRDGYGQT 234

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVK----SPSLFKEY 394
           E    I N      K G++G PLPG +V + +DE        GEI +        L   Y
Sbjct: 235 ETTAMIGNSPGQKVKPGSMGRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIGLMLGY 294

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 89/380 (23%), Positives = 140/380 (36%), Gaps = 84/380 (22%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           YSY +L   + R +++L S                 L  G G R+  +   S E     L
Sbjct: 1   YSYQELKELSARFANVLAS-----------------LGVGKGERVFTLLPRSPELYVAAL 43

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
           GT   G +  PL  ++    +   +   +  ++++T                        
Sbjct: 44  GTLKLGAVYGPLFSAFGPEPIRDRLELGEAKVLITTP----------------------- 80

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                          E+ D    EDPAL+ +TSGTTGKPKGV+H H+++ A         
Sbjct: 81  ------------ELYERTDP---EDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMPKFSVRGIWQRWRESYPVNGNR 265
           +    D +        V G    ++APL  G T V    +F       RW          
Sbjct: 126 DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAE----RWYGIL------ 175

Query: 266 AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-PVMQQW- 323
             E +T +   PT    L      M    + A+      LR +   S   PL P +  W 
Sbjct: 176 EEEKVTVWYTAPTALRML------MRAGPELAARYDLSSLRHIA--SVGEPLNPEVVVWG 227

Query: 324 ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS-----DA 377
           E + G  + + +  TE   + I+N      K G++G PLPG++  + E +          
Sbjct: 228 EKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGP 287

Query: 378 AGVGEICVKS--PSLFKEYW 395
             VGE+ +K   PS+F+ Y 
Sbjct: 288 GQVGELALKPGWPSMFRGYL 307

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 69/269 (25%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D A I++TSG+TG PKGVV+TH   +AQ++ L E +     +  L   PL     LF  
Sbjct: 174 DDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPL---FALFGP 230

Query: 230 LLAPLYAGAT--VEFM---------PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            L     G T  +  M         P      I                  +T   G P 
Sbjct: 231 AL-----GMTSVIPDMDPTRPATVDPAKLFAAI--------------ERYGVTNLFGSPA 271

Query: 279 MYTRLIQGYEAMDTELQAASASAAK--QLRLMMCGSSALPLPVMQQWETITGH--RLLER 334
           +  RL           +   A+  K   LR ++   + +P+ V++++  +      +L  
Sbjct: 272 LLERL----------GRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTP 321

Query: 335 YGMTEFVMAISN-----PLRGARK-----AGT-VGNPLPGVQVKIAE--DESGSD----- 376
           YG TE  + IS+      L   R      AG  VG P+ GV+V+I    D    +     
Sbjct: 322 YGATE-ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDAL 380

Query: 377 --AAG-VGEICVKSPSLFKEYWKLPKESR 402
             A G +GEI V  P + + Y+  P+ +R
Sbjct: 381 RLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Length = 552

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 38/230 (16%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTSADQFLHCLPLHHVH 224
           +D ALI +TSGTTG PKG +H H+ I A    + +A+     + T  D F+   PL    
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRDILA----ICDAFPRHVLQPTPDDVFIGSPPLAFTF 202

Query: 225 GLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYT 281
           GL   +L PL  GA+   + + +   +    Q  R            A   FT  PT   
Sbjct: 203 GLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHR------------ATILFT-APT--- 246

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-F 340
                Y AM  +++A   S+   LR  +     LP  V Q W   TG ++++  G TE  
Sbjct: 247 ----AYRAMLIKVKAFDISS---LRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATEML 299

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPS 389
            + IS     A+   T G P+PG + +I +D+      G  G + V+ P+
Sbjct: 300 HIFISANEENAKPGAT-GKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPT 348

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 93/389 (23%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY +L   + R+++LL                 A L    G R+  +   + E V  +L
Sbjct: 1   LSYAELREQSARVANLL-----------------ADLGVKPGDRVAGLLPRTPELVVAIL 43

Query: 87  GTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP 145
            TW  G I VPL  ++ P++          I   L     + V+ N A++          
Sbjct: 44  ATWRVGAIYVPLFTAFGPKA----------IEYRLGHSGAKVVVTNAANRG--------- 84

Query: 146 VPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA 205
                            K+D    +D    +YTSGTTG PKGV     ++ A    +  A
Sbjct: 85  -----------------KLD----DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYA 123

Query: 206 WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQ---RWRESYPV 261
            +    D F +       +GL+ A+  PL  G T  F+   F+    +    R       
Sbjct: 124 IDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLG----- 178

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PV 319
                   +T F G PT Y  L+            A A+A  +L+L +  S+  PL   V
Sbjct: 179 --------VTNFAGSPTAYRMLMA---------AGADAAARIKLKLRVASSAGEPLNPEV 221

Query: 320 MQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDA 377
           ++ ++   G  + + YG TE  M + N   L    +AG++G PLPG ++ + +D+    A
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 378 AGV-GEICV---KSPSL-FKEYWKLPKES 401
            G  G++ +    SP L F  YW  P+++
Sbjct: 282 DGEPGQLAIDVASSPLLWFSGYWDDPEKT 310

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 39/246 (15%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEAWEYTSADQFLHCLPLHHVHG---L 226
           A  ++TSG+TG PK V++T + + A + M   L            L  +P +H  G    
Sbjct: 223 AKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIW----QRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           FN L   L+ G T+       + G++    +  RE  P          T +  VP  Y  
Sbjct: 283 FNGL---LWGGGTLYIDDGKPLPGMFEETIRNLREISP----------TVYGNVPAGYAM 329

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE----TITGHR--LLERYG 336
           L    EAM+ +  A   S  K LRLM  G + L   + ++ +      TGHR      YG
Sbjct: 330 LA---EAMEKD-DALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG 385

Query: 337 MTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            TE     +       + G +G PLPGV++K+A    G       E+ VK P++   Y K
Sbjct: 386 ATETAPTTTGTHWDTERVGLIGLPLPGVELKLA--PVGDKY----EVRVKGPNVTPGYHK 439

Query: 397 LPKESR 402
            P+ + 
Sbjct: 440 DPELTA 445

Length = 624

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNA 229
           +P  I +TSGTTG PK   H+H S+   +++    W + T +D   +      +     +
Sbjct: 175 EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWS 234

Query: 230 LLAPLYAGATV--EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
           L +P   GA V    +P+F  + I Q     YP         IT F   PT+Y  L+Q  
Sbjct: 235 LFSPWIQGACVFVHHLPRFDPKVILQTL-SKYP---------ITTFCSAPTVYRMLVQ-- 282

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
                  Q  ++   K LR  + G   L   V++QW+  TG  L E YG TE  +  +N 
Sbjct: 283 -------QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANF 335

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDE 372
                K G++G   P   V+I +D 
Sbjct: 336 KGMKIKPGSMGKASPPYDVQIIDDN 360

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 63/244 (25%), Positives = 90/244 (36%), Gaps = 45/244 (18%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           DPA  +YTSGTTG PK  + +H+      A    L         D    CLPL+H + L 
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL---KPDDVLYLCLPLYHSNALT 138

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
               + L AGA++    KFS    W   R         A    TAF  V  +  R +   
Sbjct: 139 VGWSSALAAGASLALRRKFSASQFWPDVRR------YGA----TAFQYVGEL-CRYLLNQ 187

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISN 346
                +           LR  + G+   P  +  +++   G  R++E YG TE  +   N
Sbjct: 188 PEKPDDRDH-------PLR-KIIGNGLRP-DIWDEFKERFGVPRIVEFYGSTEGNVGFIN 238

Query: 347 PLRGARKAGTVGNPLPG----VQVKIAEDESGSDAAG---------VGEICVK--SPSLF 391
                 K G VG   P     V+  +  +E   DA G         VG +  +    + F
Sbjct: 239 LF---NKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPF 295

Query: 392 KEYW 395
             Y 
Sbjct: 296 DGYT 299

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 90/399 (22%), Positives = 153/399 (38%), Gaps = 73/399 (18%)

Query: 19  AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78
            I +  +  S+D+LA  A R +  L +                V  G C A   ++ +  
Sbjct: 4   TIISGDRRRSFDELAQRAARAAGGLAA--------------LGVRPGDCVA---LLMRND 46

Query: 79  FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK--S 136
           F F          G  AVP+   +   E+ +++ DS   ++++  D   +L  +AS   +
Sbjct: 47  FAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHAD---LLHGLASALPA 103

Query: 137 GAKFSLIPPVPNVSSE-------------TTVFDQ--SQAEKMDGQRGEDPALIVYTSGT 181
           G     +P  P +++                 ++   +Q E  DG     P  ++YTSGT
Sbjct: 104 GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGT 163

Query: 182 TGKPKGVVH---THKSIDAQVQMLTEAWEYTSADQFLHCLPLHH----VHGLFNALLAPL 234
           TG PKGV     T +   A  QM    +      + L   PL+H     +GL    L   
Sbjct: 164 TGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRL--- 220

Query: 235 YAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             G  +   P+F    +  + +R R             IT    VPTM+ RL++  E + 
Sbjct: 221 --GGVLVLQPRFDPEELLQLIERHR-------------ITHMHMVPTMFIRLLKLPEEVR 265

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRG 350
            +   +S      LR ++  ++  P  V +      G  + E YG TE   +  +     
Sbjct: 266 AKYDVSS------LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDA 319

Query: 351 ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388
               GTVG   PG +++  +++      G +GEI  +  
Sbjct: 320 LSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIA 358

Length = 509

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 85/349 (24%), Positives = 150/349 (42%), Gaps = 48/349 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G  + ++     EFV   LG    G +       Y  +E+      S   ++++   Y +
Sbjct: 75  GDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVD 134

Query: 128 VLQNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            L+ +A   G     I   P      SE T  D+++  +++    +D   + Y+SGTTG 
Sbjct: 135 KLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS-PDDVVALPYSSGTTGL 193

Query: 185 PKGVVHTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           PKGV+ THK    S+  QV        + S D  L  LP+ H++ L + LL  L  GA +
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253

Query: 241 EFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
             MPKF   ++  + QR +             +T    VP +   + +       +L + 
Sbjct: 254 LIMPKFEIGALLELIQRHK-------------VTIAPFVPPIVLAIAKSPVVEKYDLSS- 299

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHR-----LLERYGMTEFVMAISNPLRGAR 352
                  +R+++ G++    P+ ++ E     +     L + YGMTE    ++  L  A+
Sbjct: 300 -------IRMVLSGAA----PLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348

Query: 353 -----KAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
                K+G+ G  +   ++KI + E+G+       GEIC++ P + K Y
Sbjct: 349 EPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGY 397

Length = 537

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 94/384 (24%), Positives = 151/384 (39%), Gaps = 65/384 (16%)

Query: 47  DLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESE 106
           DLK  S K  N   A L  G G  + +  K  +EF   +L     G IA+P        +
Sbjct: 52  DLKDYSNKAANFFKA-LGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110

Query: 107 LLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLI---PPVPN--------VSSET 153
           +++ +  + I M++   +    E +   A + G+   L+    PVP         + + +
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170

Query: 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             F++      D    +D  L+ +TSGTTG PK V H H                 +A +
Sbjct: 171 PDFERPTGN--DATCNDDILLVYFTSGTTGMPKMVEHDH---------TYPLGHIVTA-K 218

Query: 214 FLHCLPLHHVH------GLFNALLAPLY----AGATVEF---MPKFSVRGIWQRWRESYP 260
           +   +    +H      G   A+   LY    AGA V F     KF  + + ++  E Y 
Sbjct: 219 YWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIAGAAV-FVYDYDKFDPKNLLEKI-EKY- 275

Query: 261 VNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320
                    +T F   PT+Y  LI+     D      S+     LR        L   V 
Sbjct: 276 --------GVTTFCAPPTIYRFLIK----EDLSKYDLSS-----LRYCTTAGEPLNPEVF 318

Query: 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG- 379
             ++  TG +L+E +G TE  + I+       K G++G P PG  + I + +  S   G 
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGE 378

Query: 380 VGEICVKSPS-----LFKEYWKLP 398
            GEI +++       LF  Y++ P
Sbjct: 379 EGEIVIRTSDGKPLGLFMGYYRDP 402

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 76.5 bits (188), Expect = 8e-15
 Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 36/331 (10%)

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +G+  + S E V G+L    +G   VPL   YPE  L +++ DS   ++LS    R    
Sbjct: 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR---- 3165

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                       L   V  +  +    + ++A        E+ A ++YTSG+TGKPKGV  
Sbjct: 3166 ---------LPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGI 3216

Query: 191  THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
             H ++   +  + +A+     D+ L              L  PL +GA V       V  
Sbjct: 3217 RHSALSNHLCWMQQAYGLGVGDRVLQFTTF-SFDVFVEELFWPLMSGARV-------VLA 3268

Query: 251  IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
              + WR+   +      E +      P+M              L+   A     L+ ++C
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAF----------LEEEDAHRCTSLKRIVC 3318

Query: 311  GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT--VGNPLPGVQVKI 368
            G  ALP  + QQ     G  L   YG TE  + +++            +G P+      I
Sbjct: 3319 GGEALPADLQQQV--FAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYI 3376

Query: 369  AEDESGSDAAG-VGEICVKSPSLFKEYWKLP 398
             +        G +GE+ +    L + Y   P
Sbjct: 3377 LDGSLEPVPVGALGELYLGGEGLARGYHNRP 3407

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 76.5 bits (188), Expect = 9e-15
 Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 36/340 (10%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +G+  + S E V  +L    +G   VPL   YP   L +++ DS + ++LS    
Sbjct: 559 GPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQ--- 615

Query: 126 REVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQR--GEDPALIVYTSGTT 182
                   S  G K  L   V  +       + +  +E+  G     E+ A ++YTSG+T
Sbjct: 616 --------SHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGST 667

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           GKPKG  + H+++  ++  + +A+     D  L   P      ++     PL +GA +  
Sbjct: 668 GKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVV 726

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
                 R   +              E +     VP+M    +Q +      LQ    ++ 
Sbjct: 727 AAPGDHRDPAKLVELI-------NREGVDTLHFVPSM----LQAF------LQDEDVASC 769

Query: 303 KQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GN 359
             LR ++C   ALP    +Q +  +    L   YG TE  + +++         +V  G 
Sbjct: 770 TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR 829

Query: 360 PLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
           P+  +   I +        GV GE+ +    L + Y   P
Sbjct: 830 PIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRP 869

Length = 5163

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 102/434 (23%), Positives = 163/434 (37%), Gaps = 119/434 (27%)

Query: 15  RDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70
           +D VA+R    + ++ Y+Y +L   + + +++L                   L    G R
Sbjct: 58  KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDR 100

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREV- 128
           + I      E    +LG   +G I  PL  ++ E  +   + DS+  ++++T        
Sbjct: 101 VFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP 160

Query: 129 ------LQNV-----ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
                 L++V       + G        +   +S+   FD    E  D    ED A++ Y
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDE--FD---IEWTDR---EDGAILHY 212

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHH------------VH 224
           TSG+TGKPKGV+H H   +A +Q   T  +           L LH             V 
Sbjct: 213 TSGSTGKPKGVLHVH---NAMLQHYQTGKY----------VLDLHEDDVYWCTADPGWVT 259

Query: 225 GLFNALLAPLYAGAT-----VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           G    + AP   GAT       F P+      W R  E Y V         T +   PT 
Sbjct: 260 GTSYGIFAPWLNGATNVIDGGRFSPER-----WYRILEDYKV---------TVWYTAPTA 305

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL--------PL-PVMQQW-ETITGH 329
              L+            A     K+  L     S+L        PL P + +W   + G 
Sbjct: 306 IRMLMG-----------AGDDLVKKYDL-----SSLRHILSVGEPLNPEVVRWGMKVFGL 349

Query: 330 RLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK 386
            + + + MTE   +M I+N      K G++G PLPG++  I +D+         G + +K
Sbjct: 350 PIHDNWWMTETGGIM-IANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIK 408

Query: 387 S--PSLFKEYWKLP 398
              PS+ +  W  P
Sbjct: 409 KGWPSMMRGIWNNP 422

Length = 570

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 83/422 (19%), Positives = 153/422 (36%), Gaps = 78/422 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    + Y+Y +      R++S L                 + L  G G  + ++A
Sbjct: 19  DRTAVVYGDRRYTYRETYDRCRRLASAL-----------------SKLGIGKGDVVAVLA 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +   +    G   +G + VPL       ++  +++ S+  ++   +++  + +   + 
Sbjct: 62  PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE------------DPALIVYTSGTTG 183
              K  +   +  +S      ++   E +    G+            DP  + YTSGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLL-AGGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 184 KPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            PKGVV+TH+   A +  L     W       +L  LP+ H +G +    A    G T  
Sbjct: 181 NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNG-WCFPWAITAVGGTHV 237

Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
            + K     I+    +            +T   G PT+   L    E       A     
Sbjct: 238 CLRKVDAPAIYDLIEK----------HKVTHLCGAPTVLNMLANAPE-------ADKLPL 280

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVM--------AISNPLR 349
            + +R+M  G+   P P + +     G  +   YG+TE      +        A+    R
Sbjct: 281 PRPVRVMTAGAP--PPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEER 338

Query: 350 GARKA----GTVGNPLPGVQVKIAEDESG----SDAAGVGEICVKSPSLFKEYWKLPKES 401
              KA      VG      +V + + E+      D   +GEI ++  ++ K Y+K P+ +
Sbjct: 339 ARLKARQGVRYVGLE----EVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEAT 394

Query: 402 RT 403
             
Sbjct: 395 EE 396

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 83/411 (20%), Positives = 152/411 (36%), Gaps = 85/411 (20%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y +L + + R++  L +  L+                  G  + I+ + + EF 
Sbjct: 8   SGEVVTYGELEARSNRLAHGLRALGLRE-----------------GDVVAILLENNPEFF 50

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
                   SG    P+      +E+ +++ DS   +++ +    +    +A++  A    
Sbjct: 51  EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG--- 107

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPA------LIVYTSGTTGKPKGVVH--THKS 194
             P+  V +      +S  E +  Q     A       ++Y+SGTTG+PKG+        
Sbjct: 108 -VPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166

Query: 195 IDA---QVQMLTEAWEYTSADQ-FLHCLPLHHVHGLFNALLAPL-------YAGATVEFM 243
            D     +  L     Y   D  +L   PL+H         APL         G TV  M
Sbjct: 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHT--------APLRFGMSALALGGTVVVM 218

Query: 244 PKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
            KF     +  I +R+R             +T    VPTM+ R+++  E +      +S 
Sbjct: 219 EKFDAEEALALI-ERYR-------------VTHSQLVPTMFVRMLKLPEEVRARYDVSS- 263

Query: 300 SAAKQLRLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTEFVM-AISNPLRGARKA 354
                LR+ +  ++  P+ V +     W  I    + E Y  +E     +          
Sbjct: 264 -----LRVAIHAAAPCPVEVKRAMIDWWGPI----IHEYYASSEGGGVTVITSEDWLAHP 314

Query: 355 GTVGNPLPGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESRT 403
           G+VG  + G  V+I  DE G++   G +G +  +      EY   P+++  
Sbjct: 315 GSVGKAVLGE-VRIL-DEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAA 363

Length = 502

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 96/436 (22%), Positives = 166/436 (38%), Gaps = 96/436 (22%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y ++  +A+RI S + S  +                   G R GI      E++  +  
Sbjct: 79  TYKEVYDAAIRIGSAIRSRGVNP-----------------GDRCGIYGSNCPEWIIAMEA 121

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
               G   VPL  +   + +  +++ +++S+    E     + +   K  +    I    
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFG 181

Query: 148 NVSSE---------TTVFDQSQAEKMDGQRGEDPA-------LIVYTSGTTGKPKGVVHT 191
           +VSSE          + F   +   M     E P         I+YTSGTTG+PKGV+ T
Sbjct: 182 DVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241

Query: 192 HKSIDAQV----QMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAP--LYAGATVEFMP 244
           +++I A+V     +L       T  D +   LPL HV   ++ ++    +  GA++ F  
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV---YDQVIETYCISKGASIGFW- 297

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--------------- 289
           +  +R + +  +   P          T F GVP +Y R+  G                  
Sbjct: 298 QGDIRYLMEDVQALKP----------TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDF 347

Query: 290 --------MDTELQAASAS---------AAKQ-----LRLMMCGSSALPLPVMQQWETIT 327
                   +   L+   AS           K+     +RL++ G++ LP  V +     +
Sbjct: 348 AYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTS 407

Query: 328 GHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVKIAE-DESGSDAAG---VGE 382
              L + YG+TE        +       GTVG P+  ++ ++    E G DA      GE
Sbjct: 408 CSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGE 467

Query: 383 ICVKSPSLFKEYWKLP 398
           IC++  +LF  Y K  
Sbjct: 468 ICLRGNTLFSGYHKRQ 483

Length = 660

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 32/245 (13%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEA-WEYTSADQFLHCLPLHHVHG 225
             E PA + YTSGTTG PKG V   ++ +++V  M T+A   +   +  L  +PL+HV G
Sbjct: 150 EPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIG 209

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRL 283
            F  L+A L            ++ G +    E  P +  +  E   +T+    PT    L
Sbjct: 210 FFAVLVAAL------------ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDAL 257

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
               E    +L          L  +    + +P  V+++         +  YG TE + +
Sbjct: 258 AAAAEGAPLKL--------DSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNS 309

Query: 344 ISNPLRGARKAGTVGNP--LPGVQ-VKIAEDESGSDAAGV-GEICVK-SPSLFKEYWKLP 398
           +        + GT   P     V+ V+I      +   G  GE+ V  + + F  Y   P
Sbjct: 310 LYMR---DPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQP 366

Query: 399 KESRT 403
           + +  
Sbjct: 367 QATAE 371

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 72.0 bits (176), Expect = 2e-13
 Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 34/239 (14%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLF 227
           G+  A   YTSGTTG PK  +H H      V  M  +A   T  D  L    ++  +GL 
Sbjct: 144 GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT-----GVPTMYTR 282
           N++  PL  G +                    PV    A      F      GVP  + R
Sbjct: 204 NSVWFPLATGGSAVINS--------------APVTPEAAAILSARFGPSVLYGVPNFFAR 249

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFV 341
           +I           + S  + + LR ++    AL L + ++  E   G  +L+  G TE  
Sbjct: 250 VI----------DSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVG 299

Query: 342 MA-ISNPLRGARKAGTVGNPLPGVQVK-IAEDESGSDAAGVGEICVKSPSLFKEYWKLP 398
              +SN +   R  GT+G  LP  +++ +A D + +     G++ V+ P++ K YW  P
Sbjct: 300 QTFVSNRVDEWR-LGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRP 357

Length = 705

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 82/394 (20%), Positives = 151/394 (38%), Gaps = 85/394 (21%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--------SYPESELLHVMHDS-DISM 118
           G R+ ++A+   +FV       ++G + VPL L        SY     L  M  S   + 
Sbjct: 74  GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESY--IAQLRGMLASAQPAA 131

Query: 119 VLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIV 176
           +++ ++    +      +     L             F       +   R   +D A + 
Sbjct: 132 IITPDELLPWVNEATHGNPLLHVLSH---------AWFKALPEADVALPRPTPDDIAYLQ 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           Y+SG+T  P+GV+ TH+++ A ++ ++ +  +    D+ +  LP +H  GL   LL P+ 
Sbjct: 183 YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVA 242

Query: 236 AGATVEFMP--KFSVRGI-WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
              +V+++P   F+ R + W        ++ NR   + +     P        GYE    
Sbjct: 243 TQLSVDYLPTRDFARRPLQWLDL-----ISRNRGTISYS-----PPF------GYEL--C 284

Query: 293 ELQAASASAA----KQLRLMMCGSSALPLPVMQQW-ETITGHRLLER-----YGMTEFVM 342
             +  S   A       R+   G+  +   V+ Q+ E        ++     YG+ E  +
Sbjct: 285 ARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATL 344

Query: 343 AIS-NPLRGARKAGTV---------------------------GNPLPGVQVKIAEDESG 374
           A+S +PL        V                           G  LPG +++I  +E+G
Sbjct: 345 AVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI-RNEAG 403

Query: 375 SDAA--GVGEICVKSPSLFKEYWKLPKESRTLSS 406
                  VG ICV+ PSL   Y++  +    L++
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAA 437

Length = 579

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 91/393 (23%), Positives = 146/393 (37%), Gaps = 102/393 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A+R + +  ++ QL +   ++++      +         E S V          +  
Sbjct: 18  QAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVV--------EGSGVA---------LRG 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K S E +   L     G   +PL    P+  L  ++    +   L  E            
Sbjct: 61  KNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGEN--------- 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
               FS +  +     E        A     QR    A +  TSG+TG PK  VHT ++ 
Sbjct: 112 ---TFSALTSLHLQLVEGA-----HAVAWQPQR---LATMTLTSGSTGLPKAAVHTAQAH 160

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP-LYAGATVEFMPKFSVRGIWQR 254
            A  + +     +T+ D +L  LPL HV G    ++   LYAGAT+              
Sbjct: 161 LASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGATLVV------------ 206

Query: 255 WRESYPVNGNRAGEAITAFTG---VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            R+  P+      +A+   T    VPT   RL+            +   + K + L   G
Sbjct: 207 -RDKQPLE-----QALAGCTHASLVPTQLWRLLD---------NRSEPLSLKAVLL---G 248

Query: 312 SSALPLPVMQQWE-----TITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPG 363
            +A+P+ + +Q E        G      YG+TE    V A     R    AG VG+PLPG
Sbjct: 249 GAAIPVELTEQAEQQGIRCWCG------YGLTEMASTVCAK----RADGLAG-VGSPLPG 297

Query: 364 VQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            +VK+ +           EI ++  SL   YW+
Sbjct: 298 REVKLVDG----------EIWLRGASLALGYWR 320

Length = 458

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 70.2 bits (172), Expect = 5e-13
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 39/242 (16%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGV+++H+S  + A +    +A   ++AD  L  +PL H +    A  AP 
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 235 YAGATVEFMPKFSVRG--IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
                V  MP   + G  +++              E +T   GVPT++  L+Q  E    
Sbjct: 244 MGTKLV--MPGAKLDGASVYELL----------DTEKVTFTAGVPTVWLMLLQYMEKEGL 291

Query: 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-----VMAISNP 347
           +L          L++++CG SA+P  +++ +E + G  +   +GMTE      + A+  P
Sbjct: 292 KL--------PHLKMVVCGGSAMPRSMIKAFEDM-GVEVRHAWGMTEMSPLGTLAALKPP 342

Query: 348 LRGARKAG------TVGNPLPGVQVKIAEDESGS---DAAGVGEICVKSPSLFKEYWKLP 398
                           G P  GV++KI +D       D    G + V+ P++   Y+++ 
Sbjct: 343 FSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD 402

Query: 399 KE 400
            E
Sbjct: 403 GE 404

Length = 542

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 93/369 (25%), Positives = 148/369 (40%), Gaps = 73/369 (19%)

Query: 80  EFVAGVLGTWFSGCIAVPLALSYP-ES-------ELLHVMHDSDISMVLSTEDYREVLQN 131
           ++VA   G  ++G IAVP   +YP ES        LL ++ D++  ++L+  D R+ L  
Sbjct: 76  DYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQ 132

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVV 189
           +   + A     P +  V +     D + AE       + +D A + YTSG+T  PKGV 
Sbjct: 133 MEELAAAN---APELLCVDT----LDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQ 185

Query: 190 HTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +H ++ A  Q++   +  +    D  +  LPL+H  GL   LL P+++G     M    
Sbjct: 186 VSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAY 245

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-- 305
                 RW E+     +  G  I   +G P    RL           +  S SA ++L  
Sbjct: 246 FLERPLRWLEAI----SEYGGTI---SGGPDFAYRLCS---------ERVSESALERLDL 289

Query: 306 ---RLMMCGSSALPLPVMQQWET------ITGHRLLERYGMTEFVMAISNPLRG------ 350
              R+   GS  +    ++++                 YG+ E  + +S   RG      
Sbjct: 290 SRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPAL 349

Query: 351 -------ARK-----AGTV----GNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFK 392
                  AR       G+V    G   PG  V I + +S        VGEI    PS+  
Sbjct: 350 ELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAH 409

Query: 393 EYWKLPKES 401
            YW+ P+ S
Sbjct: 410 GYWRNPEAS 418

Length = 4334

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 69.9 bits (172), Expect = 7e-13
 Identities = 54/254 (21%), Positives = 89/254 (35%), Gaps = 30/254 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  + +S SY +L + A R +    +  +                 G G  + ++ 
Sbjct: 52  DRPALLFEDQSISYAELNARANRYAHWAAARGV-----------------GKGDVVALLM 94

Query: 76  KPSFEFVAGVLGTWFSGCIAV---------PLALSYPESELLHVMHDSDISMVL-STEDY 125
           +   E++A  LG    G +            LA S    +  H++   ++          
Sbjct: 95  ENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD 154

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
                 +    G          ++++       +      G   +D A  +YTSGTTG P
Sbjct: 155 LARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLP 214

Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
           K  V +H      +         T  D    CLPL+H  G   A  + L AGAT+    K
Sbjct: 215 KAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274

Query: 246 FSVRGIW---QRWR 256
           FS    W   +R+R
Sbjct: 275 FSASRFWDDVRRYR 288

Length = 600

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 73/341 (21%), Positives = 127/341 (37%), Gaps = 38/341 (11%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    +G+  + S E +  +L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 3143 GPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL 3202

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
             E L   A  +      +       +  +              GE+ A ++YTSG+TGKP
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM----------GENLAYVIYTSGSTGKP 3252

Query: 186  KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            KGV   H ++   +  + EA+E  + D+ L  +      G     L  L  G  +     
Sbjct: 3253 KGVGVRHGALANHLCWIAEAYELDANDRVLLFMSF-SFDGAQERFLWTLICGGCL----- 3306

Query: 246  FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
              VR       E      +    +I  F   P    +            + A  +    L
Sbjct: 3307 -VVRDNDLWDPEELWQAIHAHRISIACF--PPAYLQQF----------AEDAGGADCASL 3353

Query: 306  RLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAI------SNPLRGARKAGTVG 358
             + + G  A+P    +Q +     R L   YG TE V+ +       + +  A  A  +G
Sbjct: 3354 DIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYA-PIG 3412

Query: 359  NPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
             P+ G  + + + +      GV GE+ +    L + Y + P
Sbjct: 3413 RPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRP 3453

Length = 3956

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 73/354 (20%), Positives = 133/354 (37%), Gaps = 56/354 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+   +  +SY ++    + +++LL    +K                        VA
Sbjct: 473 DAPALADARYQFSYREMREQVVALANLLRERGVKP------------------GDSVAVA 514

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P S      +     +G   +PL   YP+  L  ++ D+  S++++T D      +V  
Sbjct: 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD 574

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            +   ++                   A  +   +    A I++TSG+TG+PKGV+    +
Sbjct: 575 LTSLCYNAPLAPQ------------GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTA 622

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           I  ++  +   +  T+ D  L   P      V   F     P  AGA +      + R  
Sbjct: 623 IVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF----WPFIAGAKLVMAEPEAHRD- 677

Query: 252 WQRWRESYPVNGNR--AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
                   P+   +  A   +T    VP+M    +    ++  E    +  +   LR + 
Sbjct: 678 --------PLAMQQFFAEYGVTTTHFVPSMLAAFVA---SLTPE---GARQSCASLRQVF 723

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLP 362
           C   ALP  + ++W+ +TG  L   YG TE  + +S  P  G   A   G+ +P
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVP 777

Length = 1296

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 51/234 (21%), Positives = 76/234 (32%), Gaps = 62/234 (26%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           K+++Y +     LR +  L            +N  S       G  + I    S EFV  
Sbjct: 4   KTWTYSETYDLVLRYAHWL---------HGDRNVQS-------GDFVAIDTTNSAEFVFL 47

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L  W  G +   +  +     L+H +  S    V+   D                    
Sbjct: 48  WLALWSIGAVPAFINYNLSGDPLIHCLKISGAKFVIVDPD-------------------- 87

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                     DPA ++YTSGTTG PKG   + +        L+ 
Sbjct: 88  --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES 258
                  D+   C+PL+H    F  L   L +G T+    KFS    W+  R+S
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDS 175

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.4 bits (163), Expect = 7e-12
 Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 55/269 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D VA+    +  +Y +L   A R++  L +  L                 G G  +GI A
Sbjct: 18  DRVALVCGDRRLTYAELEERANRLAHYLIAQGL-----------------GPGDHVGIYA 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E+V  +LG + +  + V +   Y E EL +++ DSD   ++   ++   +  V  +
Sbjct: 61  RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120

Query: 136 -------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
                        SG           V  E  +   S  E+  G+R  D   ++YT GTT
Sbjct: 121 LPKLRTLVVVEDGSGND----LLPGAVDYEDALAAGS-PERDFGERSPDDLYLLYTGGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAW--------EYTSADQ--------FLHCLPLHHVHGL 226
           G PKGV+   + I  +V +    +        E   A +             PL H  G 
Sbjct: 176 GMPKGVMWRQEDI-FRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ 234

Query: 227 FNALLAPLYAGATVEFMP--KFSVRGIWQ 253
           + A  A L++G TV  +P  +F    +W+
Sbjct: 235 WAAFAA-LFSGQTVVLLPDVRFDADEVWR 262

Length = 533

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)

Query: 70   RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            R+G+  + S E V G+L    +G   VPL   YP   L +++ DS I ++LS     E L
Sbjct: 2240 RVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEAL 2299

Query: 130  QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
              + +   A++ L      +++    +  +    +   + +  A ++YTSG+TGKPKGVV
Sbjct: 2300 GELPA-GVARWCLEDDAAALAA----YSDAPLPFLSLPQHQ--AYLIYTSGSTGKPKGVV 2352

Query: 190  HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATV 240
             +H  I    Q + E +   + D  LH   ++     F+A    LL PL  GA V
Sbjct: 2353 VSHGEIAMHCQAVIERFGMRADDCELHFYSIN-----FDAASERLLVPLLCGARV 2402

Length = 4334

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH------VMHDSDISM 118
           G  G R  I+A    E++   LG   +G IAVPL++    +   H      V+ D+  S+
Sbjct: 56  GSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGA---HDERVSAVLRDTSPSV 112

Query: 119 VLSTE-DYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           VL+T     +V + VA + G      PPV  +  +    D  +      +     A + Y
Sbjct: 113 VLTTSAVVDDVTEYVAPQPGQS---APPV--IEVDLLDLDSPRGSDARPRDLPSTAYLQY 167

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC-------------LPLHHVH 224
           TSG+T  P GV+ +H+++ A  + L        +D F                LP +H  
Sbjct: 168 TSGSTRTPAGVMVSHRNVIANFEQLM-------SDYFGDTGGVPPPDTTVVSWLPFYHDM 220

Query: 225 GLFNALLAPLYAGATVEFM 243
           GL   + AP+  G      
Sbjct: 221 GLVLGVCAPILGGCPAVLT 239

Length = 578

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 69/295 (23%), Positives = 114/295 (38%), Gaps = 78/295 (26%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTH-------KSIDAQVQMLTEAWEYTSADQF 214
             ++ Q+      ++YTSGTTG PKGV+ +H       K+    + + T   E       
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQES-----V 196

Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG-IWQRWRESYPVNGNRAGEAITAF 273
           +  LPL H+      +  P+  G  V F    +++G + +  RE  P          TAF
Sbjct: 197 VSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRP----------TAF 246

Query: 274 TGVPTMYTRL---IQGYEAMDTELQAASASAAK------QLRLMMCGSSALPL------- 317
            GVP ++ ++   ++   A  T L+   AS AK       L+LM  G S  P+       
Sbjct: 247 MGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-GESPPPMCFRLAKK 305

Query: 318 -----------------------PVMQQWETITGH-------RLLERYGMTEFVMAISNP 347
                                  P+ ++    T          ++E YGM+E     +  
Sbjct: 306 LVFKKVRKALGLDRCQKFFTGAAPISRE----TLEFFLSLNIPIMELYGMSETSGPHTVS 361

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
                +  + G  LPG + KI       DA G+GEIC+    +F  Y  + +++ 
Sbjct: 362 NPQNYRLLSCGKALPGCETKIHNP----DADGIGEICIWGRHVFMGYLNMEEKTE 412

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A  + +++    G  ++G IAVPL   + P     LH V+ D   S +L+T  
Sbjct: 79  GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTD 138

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E  R+  +   +K   +   +  VP+    T V    +A +      +  A + YTSG
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWV--PPEANE------DTIAYLQYTSG 190

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +T  P GV  TH ++   V  + +A E    D+ +  LP  H  GL   LL  L  G  +
Sbjct: 191 STRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGHYI 249

Query: 241 EFM-PKFSVRGIWQRWRESYPVNGNRAGEAITA 272
            FM P   VR    RW           G   +A
Sbjct: 250 TFMSPAAFVRRPG-RWIRELARKPGGTGGTFSA 281

Length = 631

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 33/239 (13%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
            +  ED A+I++TSGT   PKGV  TH ++ A  +   + +     D  +  LP  H +G
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYG 238

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESY-PVNGNRAGEAI-----TAFTGVPTM 279
             +  L PL +G  V F               +Y P+   +  E I     T     P  
Sbjct: 239 FNSCTLFPLLSGVPVVF---------------AYNPLYPKKIVEMIDEAKVTFLGSTPVF 283

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
           +  +++  +  ++ L +        LR ++ G  A    + Q+      H +L + YG T
Sbjct: 284 FDYILKTAKKQESCLPS--------LRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTT 335

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEY 394
           E    I+ N +   +    VG P+ G+ V I  +E+    +    G +  +  SLF  Y
Sbjct: 336 ECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGY 394

Length = 539

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 81/350 (23%), Positives = 139/350 (39%), Gaps = 58/350 (16%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    + I A+ S + + G+L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 1179 GPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLT---- 1234

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTS 179
                             +P    VS      D    +    Q       G++ A ++YTS
Sbjct: 1235 ----------QSHLLERLPQAEGVS--AIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTS 1282

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
            G+TG+PKGV +TH ++  ++Q +   +    +D  +   P+     ++     PL  G  
Sbjct: 1283 GSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW-PLITGC- 1340

Query: 240  VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAA 297
                 +  + G  +  R+       R  E +  + GV T++    L+Q +      +   
Sbjct: 1341 -----RLVLAGPGEH-RDPQ-----RIAELVQQY-GVTTLHFVPPLLQLF------IDEP 1382

Query: 298  SASAAKQLRLMMCGSSALPLP----VMQQWETITGHRLLERYGMTEFVMAISNPLRGARK 353
             A+A   LR +  G  ALP      V+Q+   +  H    RYG TE   AI+      + 
Sbjct: 1383 LAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLH---NRYGPTE--TAINVTHWQCQA 1437

Query: 354  AGT----VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLP 398
                   +G PL  V  ++ + E      GV GE+C+    L + Y   P
Sbjct: 1438 EDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRP 1487

Length = 4334

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 60/235 (25%), Positives = 91/235 (38%), Gaps = 43/235 (18%)

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQV-QMLT-------EAWEYTSADQFLHCLPLHHVHG 225
           +++ TSGTTG PKG      S  A +  +L+       E     +        P+ H  G
Sbjct: 211 IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPA--------PMFHATG 262

Query: 226 LFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
             +  LA +  G+TV    +F    ++  I  + +              TA   VP M +
Sbjct: 263 WAHLTLA-MALGSTVVLRRRFDPEATLEDI-AKHK-------------ATALVVVPVMLS 307

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
           R++      D   +  +      L+++    SAL   +  +     G  L   YG TE  
Sbjct: 308 RIL------DLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVA 361

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394
              I+ P   A   GTVG P  GV VKI ++       G VG I V +   F+ Y
Sbjct: 362 FATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGY 416

Length = 549

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 67/268 (25%)

Query: 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQ 213
           FD++QA  +            YTSGTTG PKG +++H+S  + A    L +A   ++ D 
Sbjct: 173 FDENQASSL-----------CYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDA 221

Query: 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
            L  +P+ HV+       APL     V   P    + +++              E +T  
Sbjct: 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELI----------EAERVTFS 271

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
            GVPT++  L+         ++ A    +  LR  + G SA P  +++ +E   G  ++ 
Sbjct: 272 AGVPTVWLGLLN-------HMREAGLRFST-LRRTVIGGSACPPAMIRTFEDEYGVEVIH 323

Query: 334 RYGMTEFVMAISNPLRGARKAGTV----------------------GNPLPGVQVKIAED 371
            +GMTE      +PL      GT+                      G  + GV +KI  D
Sbjct: 324 AWGMTEM-----SPL------GTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD 372

Query: 372 ESGS---DAAGVGEICVKSPSLFKEYWK 396
           +      D    G++ V+ P +   Y++
Sbjct: 373 DGRELPWDGKAFGDLQVRGPWVIDRYFR 400

Length = 539

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 63/179 (35%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R+++ L                      G  +R+G+  
Sbjct: 14  DAIAVVCGDESLTYAELNRRANRLAARL-----------------RAAGVGPESRVGVCL 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + V  +L    +G   VPL  +YP   L +++ D+   +VL+  D           
Sbjct: 57  RRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPD----------- 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                              D A ++YTSG+TG+PKGV   H++
Sbjct: 106 -----------------------------------DLAYVIYTSGSTGRPKGVAIEHRN 129

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 39/217 (17%)

Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEY 208
             +TV+D  + ++         A I Y++GTTG PKGVV++H+S+  Q   L  T++   
Sbjct: 168 GRSTVYDWPELDE------TTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV 221

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAG 267
           T  + FL C+P++HV   +   LA   +G  + F  P  S   + +    + P   +   
Sbjct: 222 THGESFLCCVPIYHVLS-WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--- 277

Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT 327
                  GVPT++ +L+  Y     E  +        L+ +  G SA+P  +++ WE   
Sbjct: 278 -------GVPTLWIQLMVHYLKNPPERMS--------LQEIYVGGSAVPPILIKAWEERY 322

Query: 328 GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV 364
           G  ++  +GMTE     ++P+      GTV  P  GV
Sbjct: 323 GVDVVHVWGMTE-----TSPV------GTVARPPSGV 348

Length = 576

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 68/278 (24%), Positives = 101/278 (36%), Gaps = 84/278 (30%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNA 229
           D AL+  TSG+TG PK V  TH ++ A  + +  A E+    D  +  LPL H  G+   
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGF 212

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L  P+Y GA +                   P++          F   P ++  LI  Y  
Sbjct: 213 LTVPMYFGAELVK---------------VTPMD----------FLRDPLLWAELISKYRG 247

Query: 290 MDTELQAASASA--------AKQ----------LRLMMCGSSALPLPVMQQWETITGHR- 330
             T   AA   A         +Q          LR  + G+  +    ++      G R 
Sbjct: 248 TMT---AAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD-AGARF 303

Query: 331 ------LLERYGMTEFVMAIS-----NPLR---------------------GARKAGTVG 358
                 +L  YGM E  +A+S       L                        R+  T+G
Sbjct: 304 GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLG 363

Query: 359 NPLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEY 394
            PLPG++V++  DE G      GVG I ++  S+   Y
Sbjct: 364 PPLPGLEVRVV-DEDGQVLPPRGVGVIELRGESVTPGY 400

Length = 545

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTH 192
           +DPA+I+YTSGTTGKPKG VHTH
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A     +  +Y QL   +  +++ + S  L         + S ++  G         
Sbjct: 17  DFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKL--------PDKSPIIVFG--------- 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E +A  LG   +G   +P+ +S P   +  ++  +  S++++TE+    +  +   
Sbjct: 60  HMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVI 119

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +  +      + ++ +    +D   A K     G+D   I++TSGTTGKPKGV  +H +
Sbjct: 120 TLDE------LKDIFATGNPYDFDHAVK-----GDDNYYIIFTSGTTGKPKGVQISHDN 167

Length = 503

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 65/257 (25%), Positives = 96/257 (37%), Gaps = 61/257 (23%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM----------LTEAWEYTSADQFLHCLP 219
           +DP    +TSGTTG+PK  V TH       QM          L      T  D  L   P
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTHG------QMAFVITNHLADLMPG--TTEQDASLVVAP 214

Query: 220 LHH---VHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ---RWRESYPVNGNRAGEAIT 271
           L H   +H L       +  GA    +P  +F    +W    R R +             
Sbjct: 215 LSHGAGIHQLCQ-----VARGAATVLLPSERFDPAEVWALVERHRVT------------N 257

Query: 272 AFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRL 331
            FT VPT+          M  E  A        LR ++   + +     ++     G  L
Sbjct: 258 LFT-VPTILK--------MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVL 308

Query: 332 LERYGMTEFVMAIS-------NPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE 382
           ++ +G+ E    I+       +   G   + GT G    G++V+I +DE      G  GE
Sbjct: 309 VQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGE 368

Query: 383 ICVKSPSLFKEYWKLPK 399
           ICV  P++F  Y+  P+
Sbjct: 369 ICVIGPAVFAGYYNNPE 385

Length = 528

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 52/219 (23%), Positives = 86/219 (39%), Gaps = 41/219 (18%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
            +      E+P+L+ Y+SGTTG+PK +  +   ID +++   EA      +  +   P+ 
Sbjct: 93  LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVT 152

Query: 222 HVHGLFNALLAPLYAGATVEFM----PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
           H +GL   +LA L  G+    +    PKF         R   P +             VP
Sbjct: 153 HSYGLICGVLAALTRGSKPVIITNKNPKF----ALNILRN-TPQH---------ILYAVP 198

Query: 278 TMY---TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            M     RL+ G                 Q   +M   + LP     +    T + ++++
Sbjct: 199 LMLHILGRLLPGTF---------------QFHAVMTSGTPLPEAWFYKLRERTTY-MMQQ 242

Query: 335 YGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVKIAEDE 372
           YG +E   ++I   +   +    +GNPLP V V    DE
Sbjct: 243 YGCSEAGCVSICPDM---KSHLDLGNPLPHVSVSAGSDE 278

Length = 414

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G      AL +YTSGTTG PK    +H  +  Q   +      T+ D     LPL+H  G
Sbjct: 138 GVSIRSTALYIYTSGTTGLPKAARISHLRV-LQCSGMLSLCGVTADDVVYTTLPLYHSSG 196

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIW 252
               ++  +  GAT+   PKFS    W
Sbjct: 197 ALLGIVGCIGLGATLVLKPKFSASQFW 223

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 79/357 (22%), Positives = 143/357 (40%), Gaps = 48/357 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +++    E    VL     G IAV    + P + +      +D +  L     + 
Sbjct: 66  GSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSK- 124

Query: 128 VLQNVASKSGAK-FSLIPPVP-NVSSETTVFDQS-QAEKMDGQRG---EDPALIVYTSGT 181
               +AS +  +    IP +  ++++ T   + S  A  + G      EDP  +++TSGT
Sbjct: 125 ----MASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGT 180

Query: 182 TGKPKGVVHTHKSIDAQVQMLTE---AW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TG+PK V+  +++  A   +L +    W  +   +     LP  H+ GL+  L   ++ G
Sbjct: 181 TGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGG 240

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
             V         G          +  N           VPT+ ++L+   ++ +  + + 
Sbjct: 241 LCVT--------GGENTTSLLEILTTNAVATTCL----VPTLLSKLVSELKSANATVPS- 287

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGAR 352
                  LRL+  G S      ++  E  TG R  + YG++E       +   +      
Sbjct: 288 -------LRLVGYGGSRAIAADVRFIEA-TGVRTAQVYGLSETGCTALCLPTDDGSIVKI 339

Query: 353 KAGTVGNPLPGVQVKIAEDESG-------SDAAGVGEICVKSPSLFKEYWKLPKESR 402
           +AG VG P PGV V +A  +           +A  G + +KSP+    YW  P+ + 
Sbjct: 340 EAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTA 396

Length = 540

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 65/251 (25%), Positives = 99/251 (39%), Gaps = 52/251 (20%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
            DP ++++TSGTTG PK V  +H  +    + LTE +  T  D     +PL H + +  A
Sbjct: 150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVM-A 208

Query: 230 LLAP-LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
             AP + +GA V    KFS  G     R        R G     + G P  Y  ++   E
Sbjct: 209 GWAPAVASGAAVALPAKFSASGFLDDVR--------RYGATYFNYVGKPLAY--ILATPE 258

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVM 342
             D         A   LR+   G+ A P         I       G ++ + YG +E  +
Sbjct: 259 RPD--------DADNPLRVAF-GNEASP-------RDIAEFSRRFGCQVEDGYGSSEGAV 302

Query: 343 AISNPLRGARKAGTVGNPLPGVQV---------KIAE-DESGS----DAAGVGEICVKS- 387
            +     G    G++G   PGV +          +A  D  G+    D A +GE+   + 
Sbjct: 303 IVVRE-PGT-PPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA-IGELVNTAG 359

Query: 388 PSLFKEYWKLP 398
              F+ Y+  P
Sbjct: 360 AGFFEGYYNNP 370

Length = 540

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            E MD    EDP  I+YTSG+TGKPKGVVHT 
Sbjct: 219 PEPMDA---EDPLFILYTSGSTGKPKGVVHTT 247

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 57.5 bits (140), Expect = 7e-09
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 3/35 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           D+ + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 235 DECEPEPMDA---EDPLFILYTSGSTGKPKGVLHT 266

Length = 637

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 9/186 (4%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVP--LALSYPESE-----LLHVMHDSDISMVL 120
           G R+ +V     +F+A   G  ++G I VP    LS   S+     L  + H   +++ L
Sbjct: 35  GDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVAL 94

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYT 178
           ++E   + L++  +    KF   P +    +E     +   +          D A I Y 
Sbjct: 95  TSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYK 154

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G   GV  TH+++    Q L +A +YT     ++ L      G ++  L  +  G 
Sbjct: 155 TSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGM 214

Query: 239 TVEFMP 244
               +P
Sbjct: 215 HTILIP 220

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 74/341 (21%), Positives = 130/341 (38%), Gaps = 53/341 (15%)

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
           P F  + G      SG + V L  +   + L   +  +D  +VL+   + E+L       
Sbjct: 65  PEFSLLLGAAA--LSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD------ 116

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGVVH 190
                L P V  ++ ++  +    A   D +        +D  ++++TSGT+G PK V  
Sbjct: 117 ----GLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRC 172

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH+ + +   ML + +     D     +PL H + +       L AGA++    KFS  G
Sbjct: 173 THRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
                R        R G     + G P  Y  ++   E  D         A   LR++  
Sbjct: 233 FLPDVR--------RYGATYANYVGKPLSY--VLATPERPD--------DADNPLRIVY- 273

Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV---- 366
           G+   P   + ++    G  +++ +G TE  +AI+         G +G   PGV +    
Sbjct: 274 GNEGAP-GDIARFARRFGCVVVDGFGSTEGGVAITR--TPDTPPGALGPLPPGVAIVDPD 330

Query: 367 --------KIAEDESGSDAAGVGEIC-VKSPSLFKEYWKLP 398
                   + A+    +    +GE+     P  F+ Y+  P
Sbjct: 331 TGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDP 371

Length = 529

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAW-EYTSADQFLHCLPLHHV 223
           +D ALI+YTSGTTG PKGV+HTH S+ A +      L +        + +   LPL H+
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI 322

Length = 700

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 36/243 (14%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
             AL+  TSGTT  PK V+H   ++    + +  A+ Y      L  LP   V G F+ L
Sbjct: 182 AGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG-FSTL 240

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L  L  GA +   P F      +  R             +T   G   M  R+      +
Sbjct: 241 LGALAGGAPLVCEPVFDAARTARALRR----------HRVTHTFGNDEMLRRI------L 284

Query: 291 DTELQAASASAAKQLRL--MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI---- 344
           DT  + A   +A+             L      +   +TG      YG +E V A+    
Sbjct: 285 DTAGERADFPSARLFGFASFAPALGELAALARARGVPLTG-----LYGSSE-VQALVALQ 338

Query: 345 --SNPLRGARKAGTVGNPL-PGVQVKIAEDESGSDAA-GV-GEICVKSPSLFKEYWKLPK 399
             ++P+    + G  G P  P  +V+  + + G+    G  GEI +++PSL + Y   P 
Sbjct: 339 PATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPD 396

Query: 400 ESR 402
            + 
Sbjct: 397 ATA 399

Length = 540

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 48/190 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A R   +  +Y QL   + R+++ +    L         + S ++  G         
Sbjct: 15  QTIAYRYQGQELTYQQLKEQSDRLAAFIQKRIL--------PKKSPIIVYG--------- 57

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  SG   +P+  S P   +  ++  +   +V+ T             
Sbjct: 58  HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTA------------ 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ----------RGEDPALIVYTSGTTGKP 185
                     +   +  T +   S  E+ +            +G+D   I+YTSG+TG P
Sbjct: 106 ---------ELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNP 156

Query: 186 KGVVHTHKSI 195
           KGV  +H ++
Sbjct: 157 KGVQISHDNL 166

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 99/295 (33%)

Query: 175 IVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWE--YTSADQFLHCLPLHHV------ 223
           I+YTSGT+G PKGVV TH+++      V +  E +E   T  D +L  LPL H+      
Sbjct: 225 IMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIE 284

Query: 224 -------------HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
                        HG  NAL   L     +E  P                          
Sbjct: 285 EYFFRKGASVGYYHGDLNALRDDL-----MELKP-------------------------- 313

Query: 271 TAFTGVPTMYTRLIQGYEAMDTEL-------------------------QAASASA---- 301
           T   GVP ++ R+ +G +    EL                         + AS  A    
Sbjct: 314 TLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLA 373

Query: 302 -----AK---QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV--MAISNPLRGA 351
                AK   +LRL++ G + L   + +     +   +++ YG+TE +    +  P    
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433

Query: 352 RKAGTVGNPLPGVQVKIAE-DESGSDAAG---VGEICVKSPSLFKEYWKLPKESR 402
              GTVG P    ++++ E  E G D  G    GEICV+   LF  Y+K P+ + 
Sbjct: 434 M-LGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTE 487

Length = 660

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 79/347 (22%), Positives = 127/347 (36%), Gaps = 44/347 (12%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G    +GI+ +    FV  +L     G   + L  S+    L  V+    +  V+  
Sbjct: 88  LPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYD 147

Query: 123 EDYREVL-QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
           E++   + + +A    A   +     +      V   + A +     G    +I+ TSGT
Sbjct: 148 EEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILLTSGT 207

Query: 182 TGKPKGVVH-------THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           TG PKG          T K+I  +     E      A       P+ H  G    +LA  
Sbjct: 208 TGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVA-------PMFHAWGFSQLVLAAS 260

Query: 235 YAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
            A   V    F P+ ++  I          + +RA    T    VP M+ R+      MD
Sbjct: 261 LACTIVTRRRFDPEATLDLI----------DRHRA----TGLAVVPVMFDRI------MD 300

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNP--L 348
              +  +  + + LR      S +   V+  +    G  +   Y  TE  M A + P  L
Sbjct: 301 LPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL 360

Query: 349 RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394
           R A    T G P  G +++I + +      G VG I V++ + F  Y
Sbjct: 361 RAA--PDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGY 405

Length = 537

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 3/32 (9%)

Query: 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 229 EPEPMDS---EDPLFILYTSGSTGKPKGVLHT 257

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 67/241 (27%), Positives = 94/241 (39%), Gaps = 76/241 (31%)

Query: 157 DQSQAEKM-DGQRGEDP-----ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
           D+ +A  + D  R  +P     AL+V TSGTTG PKG             MLT A    S
Sbjct: 16  DERRAALLRDALRVGEPIDDDVALVVATSGTTGTPKGA------------MLTAAALTAS 63

Query: 211 AD----------QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYP 260
           AD          Q+L  LP HH+ GL   L+  + AG+                     P
Sbjct: 64  ADATHDRLGGPGQWLLALPAHHIAGL-QVLVRSVIAGSE--------------------P 102

Query: 261 VNGN-RAGEAITAFTGV------PTMYTRL--IQGYEAMDTELQAASASAAKQLRLMMCG 311
           V  +  AG   TA             YT L  +Q  +A+D     A+ +A  +L  ++ G
Sbjct: 103 VELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD---PAATAALAELDAVLVG 159

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQVKIA 369
               P PV+       G  ++  YGM+E               G V  G PL GV+V++ 
Sbjct: 160 GGPAPAPVLDAAAAA-GINVVRTYGMSE------------TSGGCVYDGVPLDGVRVRVE 206

Query: 370 E 370
           +
Sbjct: 207 D 207

Length = 358

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 24/165 (14%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGVV+ H+   ++A   +L  AW       +L  LP+ H +G         
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNIL--AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA 246

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
            AG  V  + K   + I+   RE            +T + G P + + LI          
Sbjct: 247 RAGTNV-CLRKVDPKLIFDLIRE----------HGVTHYCGAPIVLSALINAPAEW---- 291

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
               A     +  M+ G +A P  V+ + E I G  L   YG+TE
Sbjct: 292 ---RAGIDHPVHAMVAG-AAPPAAVIAKMEEI-GFDLTHVYGLTE 331

Length = 545

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A    ++VAG      +G IAVPL A   P  +E L   + D++ ++VL+T  
Sbjct: 92  GDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTA 151

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E     L+N+      +   I  +P+ + E+ V  +           +D + + YTSG
Sbjct: 152 AAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDT--------DDVSHLQYTSG 203

Query: 181 TTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           +T  P GV  TH+++    VQM+            +  LPL+H  GL       +Y G +
Sbjct: 204 STRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHS 263

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITA 272
               P   VR   QRW ++    G+R G  +TA
Sbjct: 264 TLMSPTAFVRRP-QRWIKALS-EGSRTGRVVTA 294

Length = 612

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 33/238 (13%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
           EDP  ++YTSG+TGKPKGV+HT    +         A++Y   D +        + G   
Sbjct: 275 EDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSY 334

Query: 229 ALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
               P+  GATV   E  P +   G      + Y V         T F   PT+   L  
Sbjct: 335 VTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKV---------TIFYTAPTLVRSL-- 383

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPL-PVMQQW--ETITGHR--LLERYGMTEF 340
               M    +  +  + K LR++  GS   P+ P   +W    +   R  + + +  TE 
Sbjct: 384 ----MRDGDEYVTRHSRKSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 437

Query: 341 VMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAG--VGEICVKS--PSLFK 392
              +  PL GA  +K G+   P  GVQ  I  DE G +  G   G +CVK   P  F+
Sbjct: 438 GGFMITPLPGAWPQKPGSATFPFFGVQPVIV-DEKGKEIEGECSGYLCVKKSWPGAFR 494

Length = 666

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 71/280 (25%), Positives = 112/280 (40%), Gaps = 65/280 (23%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSI----DAQVQMLTEAWE-YTSADQFLHCLPLH 221
           ++  D   I+YTSGTTG PKGV+ +++SI       +++L  A    T  D +L  LPL 
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279

Query: 222 HVHGLFNALLAPLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE-AITAFTGVPT 278
           H+   F+ ++   +   GA + F            WR    +     GE   T F  VP 
Sbjct: 280 HI---FDRVIEECFIQHGAAIGF------------WRGDVKLLIEDLGELKPTIFCAVPR 324

Query: 279 MYTRLIQGYE------------AMDTELQ-------------AASA-------SAAKQ-- 304
           +  R+  G +              D+                 AS        +  KQ  
Sbjct: 325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGL 384

Query: 305 ---LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNP 360
              +R+++ G++ L   V      +    +L+ YG+TE        L       GTVG P
Sbjct: 385 GGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPP 444

Query: 361 LPGVQVKIAE-DESGSDAAGV---GEICVKSPSLFKEYWK 396
           +P V +++    E   DA      GEIC++  +LF  Y+K
Sbjct: 445 VPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Length = 666

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 68/282 (24%), Positives = 100/282 (35%), Gaps = 68/282 (24%)

Query: 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV---QMLT 203
           V     V         D   G D   ++Y+SGTTG+PKG+      +  D  +     L 
Sbjct: 136 VGYAEAVAGLPATPIADESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQ 192

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-------GATVEFMPKF----SVRGIW 252
             W + S   +L   PL+H         AP  A       G TV  M  F     +  I 
Sbjct: 193 RLWGFRSDMVYLSPAPLYHS--------APQRAVMLVIRLGGTVIVMEHFDAEQYLALI- 243

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           + +              +T    VPTM++R+++  E +  +   +S   A          
Sbjct: 244 EEYG-------------VTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIH-------- 282

Query: 313 SALPLPV-----MQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQ 365
           +A P P      M  W    G  + E Y  TE     A  +    A   GTVG  + G  
Sbjct: 283 AAAPCPPQVKEQMIDW---WGPIIHEYYAATEGLGFTACDSEEWLAHP-GTVGRAMFGD- 337

Query: 366 VKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLP---KESR 402
           + I  D+ G++      G I  +    F EY   P    E+R
Sbjct: 338 LHIL-DDDGAELPPGEPGTIWFEGGRPF-EYLNDPAKTAEAR 377

Length = 511

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 65/248 (26%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               E   +++ T G++G+ +  +HT +++ A VQ     ++    + F   LPL+HV G
Sbjct: 116 LPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQVNSFC-VLPLYHVSG 174

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWR--ESYPVNGNRAGEAITAFTGVPTMYTRL 283
           L   + + L  G       K  +      ++  +S         +   +   VPT   RL
Sbjct: 175 LMQFMRSFLTGG-------KLVI----LPYKRLKSGQELPPNPSDFFLSL--VPTQLQRL 221

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER--------- 334
                     LQ      A Q R ++ G +    P    W +     LLE+         
Sbjct: 222 ----------LQLRPQWLA-QFRTILLGGA----PA---WPS-----LLEQARQLQLRLA 258

Query: 335 --YGMTEFVMAISN--P---LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKS 387
             YGMTE    I+   P   L G     + G  LP  Q+ I  ++        G I +++
Sbjct: 259 PTYGMTETASQIATLKPDDFLAGNN---SSGQVLPHAQITIPANQ-------TGNITIQA 308

Query: 388 PSLFKEYW 395
            SL   Y+
Sbjct: 309 QSLALGYY 316

Length = 452

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 36/251 (14%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q   DP  + YTSGTT  PKGVV +H+            WE  +   +L  LP+ H +G 
Sbjct: 183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGW 242

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
                     G +V  M   +   I++          N     +T    VPT++  L++G
Sbjct: 243 TFTWGTAARGGTSV-CMRHVTAPEIYK----------NIEMHNVTHMCCVPTVFNILLKG 291

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-- 344
                  L  +  S    +   + G S  P  ++++ + + G +++  YG+TE    +  
Sbjct: 292 -----NSLDLSPRSGPVHV---LTGGSPPPAALVKKVQRL-GFQVMHAYGLTEATGPVLF 342

Query: 345 ------------SNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSL 390
                       +  +    + G     L  V VK  E +     D   +GEI +K  S+
Sbjct: 343 CEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSI 402

Query: 391 FKEYWKLPKES 401
            K Y K PK +
Sbjct: 403 MKGYLKNPKAT 413

Length = 579

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 150 SSETTVFDQSQAEKMDGQRGEDP--------ALIVYTSGTTGKPKGVVHTHKSIDAQVQ- 200
           SS  TV   S+ EK+  +   DP        A+I+YTSG+TG PKGV+ TH +I A V  
Sbjct: 222 SSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG 281

Query: 201 MLTEAWEYTSADQFLHCLPLHHV 223
           ++T   +    D +L  LPL H+
Sbjct: 282 VMTVVPKLGKNDVYLAYLPLAHI 304

Length = 696

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 72/331 (21%), Positives = 128/331 (38%), Gaps = 38/331 (11%)

Query: 43  LCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
           L   +L+  +E           G   G  +G++ +    FV  V      G   VP++  
Sbjct: 61  LSYRELQRATESLARR--LTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTE 118

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161
           +    L   +    IS V++  ++ E +    + +    ++I P       T   ++S  
Sbjct: 119 FRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDP------ATAGAEESGG 168

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCL 218
                  G    +++ TSGTTGKPKGV    +   ++   V +L +     +  +    +
Sbjct: 169 RPAVAAPGR---IVLLTSGTTGKPKGVPRAPQLRSAVGVWVTIL-DRTRLRTGSRISVAM 224

Query: 219 PLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           P+ H  G    L+  +  G TV     F       +       + +RA     AFT VP 
Sbjct: 225 PMFHGLG-LGMLMLTIALGGTVLTHRHFDAEAALAQ------ASLHRA----DAFTAVPV 273

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +  R+      ++   +  + +   QLR++M     L   + Q++    G  L   YG T
Sbjct: 274 VLARI------LELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGST 327

Query: 339 EF-VMAISNPLRGARKAGTVGNPLPGVQVKI 368
           E  + A++ P        TVG P+ G  V+I
Sbjct: 328 EVGIGALATPADLRDAPETVGKPVAGCPVRI 358

Length = 516

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 124 DYREVLQNVAS--KSGAKFSLIPPV----------PNVSSETTVFDQSQAEKMDGQRGE- 170
           D RE +  +     S     ++P +           +  +        +A  ++ +R   
Sbjct: 176 DRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF 235

Query: 171 -DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-- 227
             P  I+Y+SGTTG PK +VH           L +  +       LHC  L     LF  
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAGG------TLLQHLKEHG----LHC-DLRPGDRLFYY 284

Query: 228 --------NALLAPLYAGATV 240
                   N L++ L +GAT+
Sbjct: 285 TTTGWMMWNWLVSGLLSGATL 305

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 62/233 (26%), Positives = 89/233 (38%), Gaps = 29/233 (12%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT----SADQFLHCLPLHHVH 224
             DP  I+YTSGTTGKPKGVV   +        L  +          D F     +  V 
Sbjct: 219 STDPLYILYTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVV 275

Query: 225 GLFNALLAPLYAGATVEFMPKFSVR----GIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
           G    +  PL  GAT        V     G + R  E Y VN          FT  PT  
Sbjct: 276 GHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVN--------ALFT-APTAI 326

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            R I+  +     ++    S+   LR +      L  P ++  E   G  +++ +  TE 
Sbjct: 327 -RAIRKQDPDGEYIKKYDLSS---LRALFLAGERLDSPTLEWIEKTLGVPVIDHWWQTET 382

Query: 341 VMAISNPLRG----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388
              I+    G      K G+ G P+PG  V++ ++       G +G I +K P
Sbjct: 383 GWPITANCVGLELLPIKPGSPGKPVPGYDVQVLDETGEELGPGELGNIVIKLP 435

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 83/364 (22%), Positives = 133/364 (36%), Gaps = 74/364 (20%)

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPL--------ALSYPESELLHVMHDSDISMVLST 122
           +G+V +P+ E VA + G W +G  AV +                 L       +  VLS 
Sbjct: 57  VGLVGEPTVELVAAIQGAWLAG-AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSH 115

Query: 123 EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
             + E L+ V S              V    T    +++  +       PA++  T+G+T
Sbjct: 116 GSHLERLRAVDSSV-----------TVHDLATAAHTNRSASLTPPDSGGPAVLQGTAGST 164

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTS----ADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           G P+  +    S  A +  L             D     LPL+H  GL   LL    AGA
Sbjct: 165 GTPRTAI---LSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGL-AFLLTAALAGA 220

Query: 239 TVEFMPK--FSVRGI-WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY--EAMDTE 293
            +   P   FS     W  W     ++ +RA       T  P     LI  Y     D +
Sbjct: 221 PLWLAPTTAFSASPFRWLSW-----LSDSRAT-----LTAAPNFAYNLIGKYARRVSDVD 270

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH------RLLERYGMTEFVMAISNP 347
           L A        LR+ + G   +     +++ T               YG+ E   A++ P
Sbjct: 271 LGA--------LRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVP 322

Query: 348 L---------------RGARKAGTVGNPLPGVQVKIA--EDESGSDAAGVGEICVKSPSL 390
           +                GAR+   +GNP+PG++V+I+  +  +G     +GEI ++  S+
Sbjct: 323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASM 382

Query: 391 FKEY 394
              Y
Sbjct: 383 MSGY 386

Length = 525

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 27/239 (11%)

Query: 177 YTSGTTGKPKGVVHTHKSIDAQV--QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           ++SGTTG  KGV+ TH+++ A +   + +   E       L  +P  H++G+     A L
Sbjct: 191 FSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATL 250

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
                V  M +F +R           +N     E ++    VP +   L++     + +L
Sbjct: 251 RNKGKVVVMSRFELRTF---------LNALITQE-VSFAPIVPPIILNLVKNPIVEEFDL 300

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE---FVMAISNPLRG 350
                 +  +L+ +M  ++ L   ++  +E    G ++ E YG+TE     +   +P +G
Sbjct: 301 ------SKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG 354

Query: 351 A--RKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKE-SRTL 404
               K  +VG  LP ++VK  + ++G        GE+CV+S  + + Y+   +E  RT+
Sbjct: 355 HGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI 413

Length = 546

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 66/266 (24%), Positives = 93/266 (34%), Gaps = 63/266 (23%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQ----------- 213
           R  D   ++YT GTTG PKGV+   + I  +V +    +   E T  +            
Sbjct: 1   RSADDLYMLYTGGTTGMPKGVMWRQEDI-FRVLLGGPDFATGEPTLEELAKQVAAGGAGT 59

Query: 214 -FLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAI 270
            FL   PL H  G + AL A L+AG TV  +P  KF    +W+       V  +R     
Sbjct: 60  RFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRT------VEKHRVN--T 110

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PVMQQW-ETIT 327
               G       L++        L+AA       LR +   SS       V Q   E + 
Sbjct: 111 LVIVG-DAFARPLLE-------ALEAAGRYDLSSLRAIS--SSGAMWSPEVKQGLLELLP 160

Query: 328 GHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIAED----ESGSDAAGVG 381
              L++  G +E     +  +   GA   G      P   V + ED      GS    VG
Sbjct: 161 NLALVDALGASETGGGGSSVSRAGGASATGKF-ELGPDTVV-LDEDGSEVPPGSG--EVG 216

Query: 382 EICV-------------KSPSLFKEY 394
            I               K+   F+E 
Sbjct: 217 WIARGGRVPLGYYKDPEKTAKTFREI 242

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)

Query: 170 EDP---ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVH 224
           EDP     IVYTSGT+GKPKGV+ ++K++   V  L +   ++  +    L  LP+ H++
Sbjct: 301 EDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360

Query: 225 GLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
               A L+    G T+    K    FS + I+           N  G  +    GVP ++
Sbjct: 361 ERVIAYLS-FMLGGTINIWSKDINYFS-KDIY-----------NSKGNIL---AGVPKVF 404

Query: 281 TRL 283
            R+
Sbjct: 405 NRI 407

Length = 746

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 38/227 (16%)

Query: 171 DPALIVYTSGTTGKPKGV--------VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
           +P+ I+YTSGTTGKPKGV        V    S+ A   +      ++++D       +  
Sbjct: 233 EPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD-------VGW 285

Query: 223 VHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           V G    + APL AGA     E +P     G+W    E Y V         +A T +   
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVR-----TMFSAPTAI--- 337

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
             R+++  +A    L+    S+   L  +      L  P         G  +++ Y  TE
Sbjct: 338 --RVLKKQDA--AWLRKHDLSS---LHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE 390

Query: 340 F---VMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE 382
               V+AI   L     K G+ G P+ G  +++ ++ +G    G  E
Sbjct: 391 TGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP-CGPNE 436

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
             D     D    +YTSGTTG PK  V  H            A+     D    CLPL+H
Sbjct: 97  SQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYH 156

Query: 223 ----VHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
               + G+  ALL     G+TV    KFS    W
Sbjct: 157 SAGGIMGVGQALL----HGSTVVIRKKFSASNFW 186

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 171 DPALIVYTSGTTGKPKGVVHTH 192
            P  I+Y+SGTTG PK +VH H
Sbjct: 264 HPLWILYSSGTTGLPKCIVHGH 285

Length = 655

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 26/234 (11%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-A 229
           + A    + GTTG PK +  TH      V+   E   +     +L  LP  H   L +  
Sbjct: 190 EVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPG 249

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            L    AG TV   P  S           +P+        +T    VP + +  +Q  E 
Sbjct: 250 ALGVFLAGGTVVLAPDPSP-------ELCFPL---IERHGVTVTALVPPLASLWLQAAEW 299

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA---ISN 346
              +L          LRL+  G + L   + ++   + G +L + +GM E ++    + +
Sbjct: 300 ERADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDD 351

Query: 347 PLRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLP 398
           P        T G PL P  +V++ + +    A G VGE+  + P   + Y++ P
Sbjct: 352 P--PEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAP 403

Length = 542

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 305 LRLMMCGSSALPL-PVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPG 363
           +R M+ G    PL    Q++  +    +++ +G+TE V        G  +   VG  L G
Sbjct: 430 VRAMLSGGG--PLSAATQEFVNVVFGMVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKG 487

Query: 364 VQVKI--AEDESGSDAAGV-GEICVKSPSLFKEYWKLPKESR 402
           V++K+   E+   +D     GEI ++ P LFK Y+K  + +R
Sbjct: 488 VEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTR 529

Length = 700

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 173 ALIVYTSGTTGKPKGVVHT--HKSIDAQ----VQMLTEAWEYTSADQFLHCLPLHHVH-- 224
           A+++Y+SGTTG PKG+      + +DA     V +    ++ + +D +    P++H    
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL 210

Query: 225 ---GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
               + +AL      G TV    +F  +       E Y          IT    VPTM+ 
Sbjct: 211 RWCSMVHAL------GGTVVLAKRFDAQATL-GHVERY---------RITVTQMVPTMFV 254

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-F 340
           RL++    +D +++  +      LR ++  ++  P+ V        G  + E Y  TE  
Sbjct: 255 RLLK----LDADVR--TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH 308

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
            M   +        G+VG  + G  + I +D+     AG +G +  +   L   Y   P+
Sbjct: 309 GMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPE 367

Query: 400 ES 401
           ++
Sbjct: 368 KT 369

Length = 501

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)

Query: 171 DPALIVYTSGTTGKPKGV 188
           +P+ I+YTSGTTGKPKGV
Sbjct: 234 EPSYILYTSGTTGKPKGV 251

Length = 629

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHG 225
           YTSGTT  PKGVV  H+   A +  L+ A  W       +L  LP+ H +G
Sbjct: 202 YTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250

Length = 567

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCL 218
            + +             TSG+TG PK V H+  ++ ++ Q + +          + + C+
Sbjct: 86  VDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCV 145

Query: 219 PLHHVHG-LFNALLAPLYAGATV 240
           P HH++G LF+ LL P   G   
Sbjct: 146 PAHHLYGFLFSCLL-PSRRGLEA 167

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 92/411 (22%), Positives = 154/411 (37%), Gaps = 62/411 (15%)

Query: 8   YKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGC 67
             + +   D++AI    + +SY +L     R  +L                    L    
Sbjct: 30  RDQAARYPDAIAIICGNRQWSYRELDQ---RADNLAA--------------GLTKLGIKQ 72

Query: 68  GARIGIVAKPSF-EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-----S 121
           G    +V  P+  EF          G   V    S+ +SEL       + ++ +     S
Sbjct: 73  GDTA-VVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHS 131

Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--QSQAEKMDGQ--RGEDPALIVY 177
             DY +  + + SK     ++I  V   + E  +F   +S AE +     + ++ A    
Sbjct: 132 LFDYDDFARQLQSKLPTLRNII--VAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQL 189

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYA 236
           + G+TG PK +  TH      V+   E    T   ++L  LP  H + L +   L   YA
Sbjct: 190 SGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 249

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           G  V   P  S         + +P+   R    +TA   VP           A+   +QA
Sbjct: 250 GGCVVLAPDPSP-------TDCFPLI-ERHKVTVTAL--VPP----------AVALWMQA 289

Query: 297 ASASAA--KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----G 350
           AS S A    L+L+  G +       ++   + G +L + +GM E    + N  R     
Sbjct: 290 ASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAE---GLVNYTRLDDPA 346

Query: 351 ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
                T G P+ P  +V++ +D     A G  G +  + P  F+ Y+K P+
Sbjct: 347 EIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPE 397

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.92
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.88
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.87
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.84
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.67
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.67
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.58
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.24
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.62
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.9
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	94.53
PLN02620	612	indole-3-acetic acid-amido synthetase	89.9
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.5
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.62
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	85.34
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	80.88

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.2e-57  Score=435.82  Aligned_cols=369  Identities=25%  Similarity=0.372  Sum_probs=294.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            2 EVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      ++.+.+.++++.+|+.+|+..    ..+.+||+|+.+++.++|++|++.                 |+..||+|+|++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~l-----------------g~~~gdrvai~a~n   79 (613)
T COG1022          17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSL-----------------GIPAGDRVAIFAAN   79 (613)
T ss_pred             cHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEEeCC
Confidence            467889999999999999985    458999999999999999999994                 88779999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-HHHHHHHhhccCCcee---ccC---C-----
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-REVLQNVASKSGAKFS---LIP---P-----  145 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~---~~~---~-----  145 (409)
                      +++|+++.+||+.+|++.||++++.+++++.++|+.++++++|++.+. .+.+..+.........   ...   .     
T Consensus        80 r~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (613)
T COG1022          80 RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK  159 (613)
T ss_pred             CHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchh
Confidence            999999999999999999999999999999999999999999999854 4444444432111000   000   0     


Q ss_pred             ---CCCCCC-Ccc---ccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc-cCCCCeEEEe
Q 015313          146 ---VPNVSS-ETT---VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHC  217 (409)
Q Consensus       146 ---~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~  217 (409)
                         ...... ...   ..............++|.|.|+|||||||.||||++||+|+++++......+. .+++|+.++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~Lsf  239 (613)
T COG1022         160 ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSF  239 (613)
T ss_pred             hccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEe
Confidence               000000 000   01111111223567899999999999999999999999999999999999997 9999999999


Q ss_pred             cCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh----hhHH
Q 015313          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA----MDTE  293 (409)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~----~~~~  293 (409)
                      +|+.|++.+.......+..|  +......++..+++.          +.+++||.++++|.+|+.+.+....    .+..
T Consensus       240 LPlaHi~Er~~~~~~~~~~g--~~~~~~~~~~~~~~d----------l~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~  307 (613)
T COG1022         240 LPLAHIFERAFEGGLALYGG--VTVLFKEDPRTLLED----------LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV  307 (613)
T ss_pred             CcHHHHHHHHHHHHHHhhcc--eEEEecCCHHHHHHH----------HHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence            99999999965433333344  444445588888888          6779999999999999988775331    1100


Q ss_pred             H------------------------------------HHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCcccccccc
Q 015313          294 L------------------------------------QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM  337 (409)
Q Consensus       294 ~------------------------------------~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~  337 (409)
                      .                                    ...+.....++|++++||+++++++...++.. |+++.++||+
T Consensus       308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGl  386 (613)
T COG1022         308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGL  386 (613)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecc
Confidence            0                                    11122334699999999999999998877776 8999999999


Q ss_pred             ccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          338 TEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       338 tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      ||++..++..+......+++|+|+|++++||+|+         |||+||||++|+|||++|++|+++  .||||
T Consensus       387 TEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~---------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf  451 (613)
T COG1022         387 TETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD---------GEILVRGPNVMKGYYKNPEATAEAFTEDGWF  451 (613)
T ss_pred             cccccceEEccccCcccCCcCCcCCCceEEEccC---------ceEEEecchhcchhcCChHHHhhhccccCCc
Confidence            9999888877777889999999999999999996         999999999999999999999999  58998

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-57  Score=434.06  Aligned_cols=364  Identities=28%  Similarity=0.418  Sum_probs=309.1

Q ss_pred             cCCCe-eEEEeCC---ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHH
Q 015313           13 MARDS-VAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGT   88 (409)
Q Consensus        13 ~~~~~-~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~   88 (409)
                      .++++ +.+++..   +.+||+|+++++.++|.+|.+.|               +|+++||+|++++||+++++++++||
T Consensus        28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~---------------~~i~~gDvV~i~~pNs~~~~~~~la~   92 (537)
T KOG1176|consen   28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELG---------------LGIKKGDVVGILAPNTPEFVELALAV   92 (537)
T ss_pred             ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcC---------------CCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            34444 6666644   99999999999999999999864               26899999999999999999999999


Q ss_pred             HhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCcc-------cccc---
Q 015313           89 WFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-------VFDQ---  158 (409)
Q Consensus        89 ~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---  158 (409)
                      +++|+++.+++|.+++.++.+.++.++++++++|.+..+.+..........++.+...........       ....   
T Consensus        93 ~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T KOG1176|consen   93 PMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPE  172 (537)
T ss_pred             HHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhcccc
Confidence            999999999999999999999999999999999999999998887765544444433211110000       0000   


Q ss_pred             chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                      ...........+|++.+.|||||||.||||++||++++...........+...|+.++.+|++|..|++..+.+.+..|+
T Consensus       173 ~~~~~~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~  252 (537)
T KOG1176|consen  173 GLPDGIRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGT  252 (537)
T ss_pred             CCCcccccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCc
Confidence            00000234456999999999999999999999999999988887777788889999999999999999886666888888


Q ss_pred             EEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      ++++.+.|++..++..          +++|++|+++++|.++..|++..        ....++++++|.+.+||++++++
T Consensus       253 ~ii~~~~f~~~~~~~~----------i~kykvt~~~~vP~~~~~l~~~p--------~~~~~~l~sl~~v~~gga~~~~~  314 (537)
T KOG1176|consen  253 TIICLRKFDAELFLDL----------IEKYKVTHLFLVPPVLNMLAKSP--------IVKKYDLSSLRSVLSGGAPLSPA  314 (537)
T ss_pred             eEEECCCCCHHHHHHH----------HHHhCEEEEEcChHHHHHHhcCC--------ccCcccCCccEEEEecCCCCCHH
Confidence            8888899999999999          89999999999999999999863        24557899999999999999999


Q ss_pred             HHHHHHHHhC-CccccccccccccccccccCCCC-CCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhc
Q 015313          319 VMQQWETITG-HRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (409)
Q Consensus       319 ~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~~~-~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~  395 (409)
                      +.+++.+.++ ..+.++||+||++++++.+.... .+++++|.++++++.+|.++.|+..+++ .||||+||+++++|||
T Consensus       315 ~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~  394 (537)
T KOG1176|consen  315 TLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYL  394 (537)
T ss_pred             HHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhc
Confidence            9999999998 89999999999997766554444 5899999999999999999999998777 8999999999999999


Q ss_pred             CCCcccchhhc--ccC
Q 015313          396 KLPKESRTLSS--CLY  409 (409)
Q Consensus       396 ~~~~~t~~~~~--g~~  409 (409)
                      |||++|++.++  |||
T Consensus       395 ~NpeaT~~~~~~~GW~  410 (537)
T KOG1176|consen  395 KNPEATKEAFDDDGWF  410 (537)
T ss_pred             CChHHHHhhcccCCcc
Confidence            99999998833  998

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-56  Score=439.38  Aligned_cols=373  Identities=28%  Similarity=0.447  Sum_probs=309.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcc--ccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~--~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +++.+.|.+.++.+|+++|+++.+..  +||+||.++++++|..|++.                 |+++||+|+|+++|+
T Consensus        11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------~v~~gdrVail~~N~   73 (534)
T COG0318          11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQAL-----------------GVKPGDRVAILLPNS   73 (534)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            46889999999999999999998877  99999999999999999995                 799999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC----CCcc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS----SETT  154 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  154 (409)
                      ++++++++||+++|++++|+++.++..++.++++.++++.++++.+..+.+.....................    ....
T Consensus        74 ~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T COG0318          74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEA  153 (534)
T ss_pred             HHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHH
Confidence            999999999999999999999999999999999999999999998855555555443321111111111100    0001


Q ss_pred             ccccc--hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHH
Q 015313          155 VFDQS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       155 ~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                      .....  ........+++++++++|||||||.||+|.+||+++..+.......+.  +++.|++++++|++|.+|+...+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~  233 (534)
T COG0318         154 LAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL  233 (534)
T ss_pred             HhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHH
Confidence            10000  000111156899999999999999999999999999999988888888  89999999999999999998877


Q ss_pred             HHHHhcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhc-cceE
Q 015313          231 LAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRL  307 (409)
Q Consensus       231 ~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~-~lr~  307 (409)
                      ...+..|+++++.+  .+++...+..          +.++++|++.++|+++..++++....        ..+++ ++|.
T Consensus       234 ~~~~~~G~~~v~~~~~~f~~~~~~~~----------i~~~~~t~~~~vPt~~~~ll~~~~~~--------~~~~~~~lr~  295 (534)
T COG0318         234 LAPLLGGGTLVLLSPEPFDPEEVLWL----------IEKYKVTVLSGVPTFLRELLDNPEKD--------DDDLSSSLRL  295 (534)
T ss_pred             HHHHHcCCEEEeCCCCCcCHHHHHHH----------HHHhcceEEecchHHHHHHHhCCccC--------ccccccceEE
Confidence            88899999999998  5899999888          67788999999999999998874432        22344 4999


Q ss_pred             EEeeCCCCCHHHHHHHHHHhC-CccccccccccccccccccCCCC--CCccccccccCCeEEEEeeCCCC-CCCCc-cce
Q 015313          308 MMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAG-VGE  382 (409)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~~~--~~~~~~G~p~~~~~~~ivd~~~~-~~~~~-~Ge  382 (409)
                      ++.||+++++++++++.+.++ .++++.||+||++..++......  ...+++|.|+|+++++|+|++++ +.| | +||
T Consensus       296 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGe  374 (534)
T COG0318         296 VLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGE  374 (534)
T ss_pred             EEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceE
Confidence            999999999999999999997 57999999999986655444333  46778899999999999998886 445 6 899


Q ss_pred             EEEeCcchhhhhcCCCcccchhhc--ccC
Q 015313          383 ICVKSPSLFKEYWKLPKESRTLSS--CLY  409 (409)
Q Consensus       383 l~v~g~~~~~gY~~~~~~t~~~~~--g~~  409 (409)
                      |+++||+++.||||+|+.|++.++  |||
T Consensus       375 i~irgp~v~~GY~~~pe~t~~~f~~~gW~  403 (534)
T COG0318         375 IWVRGPNVMKGYWNRPEATAEAFDEDGWL  403 (534)
T ss_pred             EEEECchhhhhhcCChHHHHHhhccCCee
Confidence            999999999999999999999865  897

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-56  Score=447.63  Aligned_cols=382  Identities=17%  Similarity=0.270  Sum_probs=298.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC-----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCC--------
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--------   68 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~-----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g--------   68 (409)
                      ++.+.|.++++++||++|+++.     .+++||+||.+++.++|++|.+..              .+|+++|        
T Consensus        62 ~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~--------------~~Gv~~g~~~~~~~~  127 (746)
T PTZ00342         62 HIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYE--------------GKGIPEKKYNEEQNN  127 (746)
T ss_pred             hHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHh--------------hcCCCcCcccccccc
Confidence            5789999999999999999973     268999999999999999999720              0278888        


Q ss_pred             ---CEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-c-eecc
Q 015313           69 ---ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLI  143 (409)
Q Consensus        69 ---~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~  143 (409)
                         |+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......... + ++.+
T Consensus       128 g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~  207 (746)
T PTZ00342        128 GKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIIL  207 (746)
T ss_pred             ccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEE
Confidence               9999999999999999999999999999999999999999999999999999998877776665444332 1 2222


Q ss_pred             CCCCCCC-----------------CCc------------------------c-----------ccc-------------c
Q 015313          144 PPVPNVS-----------------SET------------------------T-----------VFD-------------Q  158 (409)
Q Consensus       144 ~~~~~~~-----------------~~~------------------------~-----------~~~-------------~  158 (409)
                      .......                 ...                        .           ...             .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  287 (746)
T PTZ00342        208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDD  287 (746)
T ss_pred             CCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHH
Confidence            2110000                 000                        0           000             0


Q ss_pred             -----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc--ccCCCCeEEEecCchhHHHHHHHHH
Q 015313          159 -----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       159 -----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~g~~~~~~  231 (409)
                           ..........++|+++|+|||||||.||||++||+++++.+.......  .....|++++.+|++|++++.. .+
T Consensus       288 ~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~  366 (746)
T PTZ00342        288 MTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AY  366 (746)
T ss_pred             HHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HH
Confidence                 000011234678999999999999999999999999998876654332  2335689999999999999965 67


Q ss_pred             HHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh----hHH--------------
Q 015313          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM----DTE--------------  293 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~----~~~--------------  293 (409)
                      .++..|+++++.+. ++..+++.          +++++||+++++|.+++.|.+.....    +..              
T Consensus       367 ~~l~~G~~i~~~~~-~~~~l~~d----------i~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~  435 (746)
T PTZ00342        367 LSFMLGGTINIWSK-DINYFSKD----------IYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS  435 (746)
T ss_pred             HHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            78999999999875 78888888          77899999999999999997642211    100              


Q ss_pred             ----------------HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCcccc
Q 015313          294 ----------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV  357 (409)
Q Consensus       294 ----------------~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~  357 (409)
                                      ....+....++||.+++||+++++++.++|+..+|++++++||+||+++.++.........+++
T Consensus       436 ~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsv  515 (746)
T PTZ00342        436 NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESI  515 (746)
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccc
Confidence                            0111122347999999999999999999999999999999999999976555433344577899


Q ss_pred             cccc-CCeEEEEeeCCC-CCCCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          358 GNPL-PGVQVKIAEDES-GSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       358 G~p~-~~~~~~ivd~~~-~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |.|+ |+++++|+|.++ .....+ .|||++|||+++.|||++|++|++++  ||||
T Consensus       516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~  572 (746)
T PTZ00342        516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF  572 (746)
T ss_pred             cCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence            9998 999999998443 333233 69999999999999999999999995  8998

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=3.3e-55  Score=391.35  Aligned_cols=373  Identities=20%  Similarity=0.272  Sum_probs=313.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.++..+++.||+.|.+++  +..+||+||.+.++++|+.|++                 +|+++||+|++..||+.
T Consensus        51 Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-----------------lGL~kGDrVgvwgpN~~  113 (596)
T KOG1177|consen   51 TIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-----------------LGLKKGDRVGVWGPNSY  113 (596)
T ss_pred             cHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-----------------hcCCCCCEEEEecCChH
Confidence            5778999999999999999984  5679999999999999999999                 59999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhccCC-------------cee
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-------------KFS  141 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-------------~~~  141 (409)
                      +|+..++||.++|.+.+++||.+...++++.|++.+.+++|..+.+     ...+.++..+...             ...
T Consensus       114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth  193 (596)
T KOG1177|consen  114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH  193 (596)
T ss_pred             HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence            9999999999999999999999999999999999999999998753     3445554333210             011


Q ss_pred             -ccCCCCCCCCCcccccc----c-------hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccC
Q 015313          142 -LIPPVPNVSSETTVFDQ----S-------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (409)
Q Consensus       142 -~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~  209 (409)
                       ++...+.........++    .       .+.......+||++.|.|||||||.|||+.+||.+++++........++.
T Consensus       194 vi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~  273 (596)
T KOG1177|consen  194 VILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN  273 (596)
T ss_pred             EEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence             11111111111111000    0       00112235679999999999999999999999999999999999999999


Q ss_pred             CCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEc-cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhh
Q 015313          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (409)
Q Consensus       210 ~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  288 (409)
                      +++++++..|++|.+|+..+.+++|..|+|++++ +.|++.+.+++          ++++++|.++++|+|+..+++.  
T Consensus       274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa----------i~~ekcT~l~gtPtM~~Dlln~--  341 (596)
T KOG1177|consen  274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA----------ISNEKCTTLYGTPTMFVDLLNI--  341 (596)
T ss_pred             cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH----------HHhhceEEEecChHHHHHHhcc--
Confidence            9999999999999999989999999999999995 56999999999          8889999999999999999986  


Q ss_pred             hhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCC-ccccccccccccccccc---cCCCCCCccccccccCCe
Q 015313          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISN---PLRGARKAGTVGNPLPGV  364 (409)
Q Consensus       289 ~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~---~~~~~~~~~~~G~p~~~~  364 (409)
                            +.....+++++|..+.||+++++++++.+.+.... .+...||+||++.+.+.   .+.......++|..+++.
T Consensus       342 ------~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~  415 (596)
T KOG1177|consen  342 ------PQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHY  415 (596)
T ss_pred             ------hhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccc
Confidence                  34466789999999999999999999999987765 56678999999965553   333345677899999999


Q ss_pred             EEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          365 QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       365 ~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      +.+|+|.+|..++-| .||||+||++.+.|||++++.|++.  .|-||
T Consensus       416 Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~  463 (596)
T KOG1177|consen  416 EAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWY  463 (596)
T ss_pred             ccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccce
Confidence            999999999999999 7999999999999999999999999  88997

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.3e-54  Score=437.23  Aligned_cols=379  Identities=25%  Similarity=0.327  Sum_probs=300.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----CC-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRA----DQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~----~~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      ++.+.|++.++.+||++|+.+    ++     +.+||+||.++++++|++|++                 +|+++||+|+
T Consensus        45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  107 (651)
T PLN02736         45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-----------------HGIPKGACVG  107 (651)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEE
Confidence            578899999999999999942    21     469999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-ceeccCCCCCC--
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNV--  149 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--  149 (409)
                      |+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......... ..++.......  
T Consensus       108 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  187 (651)
T PLN02736        108 LYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPL  187 (651)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhh
Confidence            999999999999999999999999999999999999999999999999998877766655443332 22111110000  


Q ss_pred             ---CC--C---ccccccc-----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEE
Q 015313          150 ---SS--E---TTVFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH  216 (409)
Q Consensus       150 ---~~--~---~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~  216 (409)
                         ..  .   ....+..     .........++++++|+|||||||.||||++||++++..+......+++.++|++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~  267 (651)
T PLN02736        188 PSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHIS  267 (651)
T ss_pred             hhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEE
Confidence               00  0   0000000     001112345789999999999999999999999999999988888888899999999


Q ss_pred             ecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHH---
Q 015313          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE---  293 (409)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~---  293 (409)
                      .+|++|.++++ .++.++..|+++++.+. ++..+++.          ++++++|+++++|.+++.+.+.....-..   
T Consensus       268 ~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  335 (651)
T PLN02736        268 YLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDD----------LAALRPTIFCSVPRLYNRIYDGITNAVKESGG  335 (651)
T ss_pred             eCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEecchHHHHHHHHHHHHHHhcccH
Confidence            99999999996 47888999999998775 77778877          78899999999999999887653210000   


Q ss_pred             -------------------------------HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccc
Q 015313          294 -------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM  342 (409)
Q Consensus       294 -------------------------------~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~  342 (409)
                                                     ....+....+++|.+++||+++++++.+++++.+|+++++.||+||+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~  415 (651)
T PLN02736        336 LKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSC  415 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhch
Confidence                                           0000111125899999999999999999999989999999999999987


Q ss_pred             cccccCCCCCCccccccccCCeEEEEeeCCC-C---CCCC-ccceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          343 AISNPLRGARKAGTVGNPLPGVQVKIAEDES-G---SDAA-GVGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       343 ~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~-~---~~~~-~~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      .++.........+++|+|+|+++++|+|.++ .   .... ..|||+++||+++.|||++|++|++.+  ||||
T Consensus       416 ~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~  489 (651)
T PLN02736        416 VISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWL  489 (651)
T ss_pred             heeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCe
Confidence            6554433445678999999999999999432 2   1222 269999999999999999999999985  7998

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.4e-54  Score=436.26  Aligned_cols=378  Identities=21%  Similarity=0.282  Sum_probs=289.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----C-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      ++.+.|.+.++.+||++|+.+.    +     +++||+||+++++++|++|.+                 +|+++||+|+
T Consensus        46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~Gd~Va  108 (666)
T PLN02614         46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-----------------VGVKDEAKCG  108 (666)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            6789999999999999999841    1     258999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--Cc-eeccCCCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AK-FSLIPPVPNV  149 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~  149 (409)
                      |+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+........  .. ++.+......
T Consensus       109 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~  188 (666)
T PLN02614        109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSRE  188 (666)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChH
Confidence            99999999999999999999999999999999999999999999999999876544432221110  11 1111110000


Q ss_pred             ----C--CC---cccccc-----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc-----ccCC
Q 015313          150 ----S--SE---TTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTS  210 (409)
Q Consensus       150 ----~--~~---~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~  210 (409)
                          .  ..   ....+.     ..........++|+++|+|||||||.||||.+||++++..+......+     .++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~  268 (666)
T PLN02614        189 QKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV  268 (666)
T ss_pred             HhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC
Confidence                0  00   000000     000011223578999999999999999999999999998777655443     4678


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       211 ~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      +|++++.+|++|.+++.. .+..+..|+++++.+ +++..+++.          +++++||+++++|.+++.+.+.....
T Consensus       269 ~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~  336 (666)
T PLN02614        269 KDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIED----------LGELKPTIFCAVPRVLDRVYSGLQKK  336 (666)
T ss_pred             CcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCeEEEecHHHHHHHHHHHHHH
Confidence            899999999999999864 566788999998876 488888888          78899999999999999987643210


Q ss_pred             hHH-------------------------------------HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh-CCccc
Q 015313          291 DTE-------------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLL  332 (409)
Q Consensus       291 ~~~-------------------------------------~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~  332 (409)
                      ...                                     .........++||.+++||+++++++ ++|.+.+ +++++
T Consensus       337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~  415 (666)
T PLN02614        337 LSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVL  415 (666)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEE
Confidence            000                                     00000111268999999999999875 5676766 58999


Q ss_pred             cccccccccccccc-cCCCCCCccccccccCCeEEEEee-CC--CCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hc
Q 015313          333 ERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAE-DE--SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SS  406 (409)
Q Consensus       333 ~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd-~~--~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~  406 (409)
                      +.||+||+++..+. .+......+++|+|+|+++++|+| ++  +++++.| .|||+||||+++.|||++|++|++. .|
T Consensus       416 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~d  495 (666)
T PLN02614        416 QGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLID  495 (666)
T ss_pred             eeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhcc
Confidence            99999998754432 222234578999999999999998 33  3566666 8999999999999999999999998 58


Q ss_pred             ccC
Q 015313          407 CLY  409 (409)
Q Consensus       407 g~~  409 (409)
                      |||
T Consensus       496 Gw~  498 (666)
T PLN02614        496 GWL  498 (666)
T ss_pred             CCc
Confidence            998

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=9.3e-55  Score=412.29  Aligned_cols=365  Identities=23%  Similarity=0.324  Sum_probs=295.6

Q ss_pred             HHHhcc-cCCCeeEEEeCC-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            7 AYKKGS-MARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         7 l~~~~~-~~~~~~a~~~~~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +.++.. ..+|+.|+++.+     +.+||+||++.+.++|+.|++.                .|+ +||||+|++|+.+|
T Consensus        15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~----------------~gv-kGDrV~iymp~~pe   77 (528)
T COG0365          15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDL----------------GGV-KGDRVAIYMPNSPE   77 (528)
T ss_pred             hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHh----------------CCC-CCCEEEEEcCCCHH
Confidence            445544 247899999853     6799999999999999999975                478 99999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhc-----cCCceeccCCCCCCCCCccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK-----SGAKFSLIPPVPNVSSETTV  155 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  155 (409)
                      .++++|||+++|++.+|+.+.++++.+...+++++++++|+++......+.....     .....++.....  ....+.
T Consensus        78 ~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--~~~~~~  155 (528)
T COG0365          78 AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--LWYDEA  155 (528)
T ss_pred             HHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--ccHHHH
Confidence            9999999999999999999999999999999999999999988665433321110     000011111111  101111


Q ss_pred             c-ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH-hhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          156 F-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       156 ~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                      . ...........+.+|+++++|||||||+||+|+++|..++....... ..+.+.++|++.+..++.|+.|+++.++.+
T Consensus       156 ~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~p  235 (528)
T COG0365         156 VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSP  235 (528)
T ss_pred             hhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHH
Confidence            1 11111122336789999999999999999999999997776665544 467788999999999999999999999999


Q ss_pred             HhcCCEEEEccCc---chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          234 LYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       234 l~~G~~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      |..|+|.++.+..   ++..+++.          +++|++|.++++|+.++.|.+.-.        ....++|+||.+.+
T Consensus       236 L~~Gat~~~~eg~p~~~~~~~~~~----------ie~~~vt~~~tsPT~~R~l~~~g~--------~~~~dlssLr~~~S  297 (528)
T COG0365         236 LASGATTVLYDGRPFYSPERLWEA----------LEKYKVTIFGTSPTFLRRLMKLGL--------GEPYDLSSLRVLGS  297 (528)
T ss_pred             HhcCCeEEEeCCCCCCCHHHHHHH----------HHHhCCceEeeCHHHHHHHHhcCC--------cccccchhheeeec
Confidence            9999999998753   37888888          888999999999999999988621        45678999999999


Q ss_pred             eCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCc--
Q 015313          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSP--  388 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~--  388 (409)
                      .|||++++.++.+.+.+|+++.+.||+||+|++...... +.+.++.|+|+||+++.|+|++|++++.+.|+|+++.|  
T Consensus       298 aGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~p  376 (528)
T COG0365         298 AGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWP  376 (528)
T ss_pred             cCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCCCCcCCCCceEEEEeCCCc
Confidence            999999999999999999999999999999955554333 44556669999999999999999988876699999987  


Q ss_pred             chhhhhcCCCcccchh-hcccC
Q 015313          389 SLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +++.+|||||+++.+. ++.||
T Consensus       377 ~~~~~~w~d~er~~~~y~~~~y  398 (528)
T COG0365         377 GMALTYWNDPERYKEAYFGRWY  398 (528)
T ss_pred             hhhhhhhCCHHHHHHHHhhcee
Confidence            9999999999999998 44365

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3e-53  Score=426.94  Aligned_cols=378  Identities=22%  Similarity=0.288  Sum_probs=287.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----C---C--ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRA----D---Q--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~----~---~--~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      ++.+.|.+.++++|+++|+..    +   +  +++||+||.++++++|++|.+                 +|+++||+|+
T Consensus        44 t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  106 (660)
T PLN02861         44 SPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-----------------RGVNPGDRCG  106 (660)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            577899999999999999964    1   1  479999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--Cce-eccCCCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKF-SLIPPVPNV  149 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~  149 (409)
                      |+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........  ... +.+......
T Consensus       107 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  186 (660)
T PLN02861        107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSE  186 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChh
Confidence            99999999999999999999999999999999999999999999999998876655544333221  111 111111000


Q ss_pred             ------------CCCcccccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc-----cCCC
Q 015313          150 ------------SSETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-----YTSA  211 (409)
Q Consensus       150 ------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~  211 (409)
                                  ......... ..........++|+++|+|||||||.||||.+||++++..+......+.     +..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~  266 (660)
T PLN02861        187 QKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE  266 (660)
T ss_pred             hhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCC
Confidence                        000000000 0001122345789999999999999999999999999988776655443     4678


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhh
Q 015313          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (409)
Q Consensus       212 d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~  291 (409)
                      |++++.+|++|.+++.. .+.+++.|+++++.+ +++..+++.          +++++||+++++|.+++.+.+.....-
T Consensus       267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~~  334 (660)
T PLN02861        267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMED----------VQALKPTIFCGVPRVYDRIYTGIMQKI  334 (660)
T ss_pred             CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCcEEeechHHHHHHHHHHHHHH
Confidence            99999999999999865 555799999999874 578888888          788999999999999998875321100


Q ss_pred             --------------------------------HH-----HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCC-cccc
Q 015313          292 --------------------------------TE-----LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLE  333 (409)
Q Consensus       292 --------------------------------~~-----~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~-~v~~  333 (409)
                                                      ..     ....+....+++|.+++||+++++++. +|.+.++. .+++
T Consensus       335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~  413 (660)
T PLN02861        335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ  413 (660)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE
Confidence                                            00     000011112689999999999999975 56666764 7999


Q ss_pred             ccccccccccccc-cCCCCCCccccccccCCeEEEEee--CCCC-CCCCc-cceEEEeCcchhhhhcCCCcccchh-hcc
Q 015313          334 RYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAE--DESG-SDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSC  407 (409)
Q Consensus       334 ~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd--~~~~-~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g  407 (409)
                      .||+||+++.++. ........+++|+|+|+++++|+|  ++|. ....+ .|||++|||+++.||||+|++|++. .||
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dG  493 (660)
T PLN02861        414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDG  493 (660)
T ss_pred             ecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhcc
Confidence            9999998765443 222233568999999999999998  3342 22333 7999999999999999999999998 589


Q ss_pred             cC
Q 015313          408 LY  409 (409)
Q Consensus       408 ~~  409 (409)
                      ||
T Consensus       494 w~  495 (660)
T PLN02861        494 WF  495 (660)
T ss_pred             Cc
Confidence            98

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5.2e-54  Score=412.07  Aligned_cols=370  Identities=30%  Similarity=0.470  Sum_probs=291.8

Q ss_pred             HHHhcccCCCeeEEEe-CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHH
Q 015313            7 AYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (409)
Q Consensus         7 l~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~   85 (409)
                      |+++++++||++|+++ .++++||+||+++++++|..|.+                 +|+++|++|+|+++|++++++++
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~-----------------~g~~~~~~V~i~~~n~~~~~~~~   63 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRK-----------------LGVKKGDRVAILLPNSIEFVVAF   63 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHH-----------------TTSSTTSEEEEEESSSHHHHHHH
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHH-----------------hCCCccccccccCCccceeeeee
Confidence            6789999999999999 99999999999999999999998                 59999999999999999999999


Q ss_pred             HHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe----chhHHHHHHHHhhccCCc-eeccCCCCCCCCCccccccc-
Q 015313           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS----TEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQS-  159 (409)
Q Consensus        86 ~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  159 (409)
                      +||+++|++++|+++.++.+++.+++++++++++|+    +......+.......... .................... 
T Consensus        64 ~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (417)
T PF00501_consen   64 LACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASL  143 (417)
T ss_dssp             HHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999996    333333333333322211 11111111111100000000 


Q ss_pred             hhhhccC-CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH--hhcccCCCCeEEEecCchhHHHHHHHHHHHHhc
Q 015313          160 QAEKMDG-QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA  236 (409)
Q Consensus       160 ~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~  236 (409)
                      ....... ..++++++++|||||||.||+|.++|+++++.+..+.  ...+++  |++++.+|++|..|++..++.++..
T Consensus       144 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~  221 (417)
T PF00501_consen  144 SDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFS  221 (417)
T ss_dssp             CHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccc
Confidence            0000000 0568999999999999999999999999999887764  222233  6999999999999996779999999


Q ss_pred             CCEEEEccCcch---HHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          237 GATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       237 G~~i~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      |+++++++....   +.+++.          ++++++|+++++|.+++.+++..+.. .   .....+++++|.+++||+
T Consensus       222 G~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~~~~-~---~~~~~~l~~lr~v~~~G~  287 (417)
T PF00501_consen  222 GATLVLPSPFDLFDPESLLEL----------ISRYKPTILFAVPSMLEALLQSPEEK-T---KISKKDLSSLRTVISGGE  287 (417)
T ss_dssp             TSEEEEESSHHHHHHHHHHHH----------HHHHTESEEEEEHHHHHHHHHHHHTT-H---HGTTTTGTT-SEEEEESS
T ss_pred             cccccccccccccccccchhc----------cccccccccccccccccccccccccc-c---cccccccccccccccccc
Confidence            999999998654   445666          78899999999999999998742111 0   112347888999999999


Q ss_pred             CCCHHHHHHHHHHhCC-cccccccccccccccccc--CCCCCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCc
Q 015313          314 ALPLPVMQQWETITGH-RLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSP  388 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~--~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~  388 (409)
                      ++++++.+++++.++. ++++.||+||++.+++..  .......+++|.|+|+++++|+|++ +++++.| .|||+++||
T Consensus       288 ~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~  367 (417)
T PF00501_consen  288 PLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGP  367 (417)
T ss_dssp             T-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEEST
T ss_pred             cCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            9999999999999987 999999999999887744  3333577889999999999999998 7788777 899999999


Q ss_pred             chhhhhcCCCcccchhhc--ccC
Q 015313          389 SLFKEYWKLPKESRTLSS--CLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~~--g~~  409 (409)
                      +++.||+++|++|++.++  |||
T Consensus       368 ~~~~gy~~~~~~~~~~~~~~~~~  390 (417)
T PF00501_consen  368 NVFSGYYNDPELTAEAFIDDGWY  390 (417)
T ss_dssp             TSBSEETTBHHHHHHHEETTSEE
T ss_pred             ccceeeeccccccccccccccce
Confidence            999999999999999954  787

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-53  Score=402.22  Aligned_cols=379  Identities=24%  Similarity=0.365  Sum_probs=296.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~--------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      +++.+.|.+.+..+|+.+++-.        ..+++||+|.++++..++..|++                 +|+++++.|+
T Consensus        75 ~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-----------------lG~~~~~~VG  137 (691)
T KOG1256|consen   75 LTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-----------------LGVKEDSKVG  137 (691)
T ss_pred             ccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCceEE
Confidence            4678999999999999999865        23799999999999999999998                 5999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec-hhHHHHHHHHhhc--cC-Cceec-cCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYREVLQNVASK--SG-AKFSL-IPPVP  147 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~-~~~~~-~~~~~  147 (409)
                      |+..|++||++..+||...|+++||++.+++++.+.+|++.+.++++|+| ++.+..+.+....  .. .+.++ +....
T Consensus       138 Iy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~  217 (691)
T KOG1256|consen  138 IYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPS  217 (691)
T ss_pred             EeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999 5555554443332  21 22222 21111


Q ss_pred             CC-CC-----------Ccccccc--chhhhc-cCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHH---Hhhc---
Q 015313          148 NV-SS-----------ETTVFDQ--SQAEKM-DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML---TEAW---  206 (409)
Q Consensus       148 ~~-~~-----------~~~~~~~--~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~---  206 (409)
                      .. ..           +.+..+.  ...... ..+.++|.+.|+|||||||.||||.+||+|++..+...   ....   
T Consensus       218 ~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~  297 (691)
T KOG1256|consen  218 DELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAK  297 (691)
T ss_pred             hhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhccccc
Confidence            10 00           0111111  111222 46789999999999999999999999999999865532   2211   


Q ss_pred             ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHh
Q 015313          207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG  286 (409)
Q Consensus       207 ~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~  286 (409)
                      .....|.+++++||+|++..+...+ .+..|+.+.+..+ |+..+.+.          +++.+||.+.++|.+|+++.+.
T Consensus       298 ~~~~~dv~lSyLPLAHi~er~~~~~-~~~~G~~IgF~~g-D~~~l~~d----------lk~lkPT~f~~VPRVl~riye~  365 (691)
T KOG1256|consen  298 ATVGDDVYLSYLPLAHIFERVVELY-TFYIGAKIGFARG-DILKLTDD----------LKELKPTVFPGVPRVLERIYEG  365 (691)
T ss_pred             ccccCceEEEeCcHHHHHHHHHHHh-HhhcccEEEEecC-ChHHHHHH----------HHHhCCcEEeccHhHHHHHHHH
Confidence            2223699999999999999977444 4689999999986 77777777          6678999999999999998876


Q ss_pred             hhhhhHHHH-------------------------------------HHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCC
Q 015313          287 YEAMDTELQ-------------------------------------AASASAAKQLRLMMCGSSALPLPVMQQWETITGH  329 (409)
Q Consensus       287 ~~~~~~~~~-------------------------------------~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~  329 (409)
                      .........                                     ..+......+|.+++|++|+++++.+.++.++|+
T Consensus       366 I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~  445 (691)
T KOG1256|consen  366 IQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC  445 (691)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc
Confidence            542111110                                     0112224589999999999999999999999999


Q ss_pred             cccccccccccc-ccccccCCCCCCccccccccCCeEEEEeeCCC-CCCCCc-cceEEEeCcchhhhhcCCCcccchh--
Q 015313          330 RLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDES-GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL--  404 (409)
Q Consensus       330 ~v~~~YG~tE~g-~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~-~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~--  404 (409)
                      +|+++||+||+. +..+..+.+. ..+++|.|.|++++|++|... +-.+.+ .|||||||+++|+|||+||+.|+++  
T Consensus       446 ~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~id  524 (691)
T KOG1256|consen  446 RVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAID  524 (691)
T ss_pred             eeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhc
Confidence            999999999998 4555554444 899999999999999999443 334444 6999999999999999999999999  


Q ss_pred             hcccC
Q 015313          405 SSCLY  409 (409)
Q Consensus       405 ~~g~~  409 (409)
                      .|||+
T Consensus       525 eDGWL  529 (691)
T KOG1256|consen  525 EDGWL  529 (691)
T ss_pred             ccccc
Confidence            79996

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.8e-53  Score=417.55  Aligned_cols=372  Identities=21%  Similarity=0.266  Sum_probs=306.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.+.++.+||++|++++.+.+||+||.++++++|+.|.+.                 |+++||+|+++++|++++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~-----------------gi~~gd~V~i~~~n~~~~  112 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLAL-----------------GVRAGDGVAVLARNHRGF  112 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHH
Confidence            467889999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceec-cCCCCCC---CCCccccc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL-IPPVPNV---SSETTVFD  157 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~  157 (409)
                      +++++||+++|++++|+++.++.+++.+++++++++++|++++....+..+.......... .......   .......+
T Consensus       113 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (549)
T PRK07788        113 VLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDD  192 (549)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHH
Confidence            9999999999999999999999999999999999999999988777665543322211111 1000000   00000000


Q ss_pred             cc--hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHh
Q 015313          158 QS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY  235 (409)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~  235 (409)
                      ..  ..........++.++++|||||||.||+|.++|+++...+......+++..+|+++...|++|..|+. .++.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~  271 (549)
T PRK07788        193 LIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAMA  271 (549)
T ss_pred             HhcCCCCCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHHH
Confidence            00  00011122356789999999999999999999999999888888888888999999999999999985 4777899


Q ss_pred             cCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCC
Q 015313          236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (409)
Q Consensus       236 ~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~  315 (409)
                      .|+++++...+++..+++.          ++++++|++.++|+++..+++....      .....++++||.+++||+++
T Consensus       272 ~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~l  335 (549)
T PRK07788        272 LGSTVVLRRRFDPEATLED----------IAKHKATALVVVPVMLSRILDLGPE------VLAKYDTSSLKIIFVSGSAL  335 (549)
T ss_pred             hCCEEEECCCCCHHHHHHH----------HHHhCCcEEEEHHHHHHHHHhCccc------ccCCCCCCceeEEEEeCCCC
Confidence            9999999988999999988          7789999999999999999875321      01234578999999999999


Q ss_pred             CHHHHHHHHHHhCCccccccccccccccccccCC-CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhh
Q 015313          316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (409)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~g  393 (409)
                      ++++.+++.+.+++++++.||+||+++.+..... .....+++|+|+++++++|+|+++++++.| .|||+++|++++.|
T Consensus       336 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~g  415 (549)
T PRK07788        336 SPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEG  415 (549)
T ss_pred             CHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCcccc
Confidence            9999999999999999999999999865543322 234567899999999999999999998888 89999999999999


Q ss_pred             hcCCCcccchhhcccC
Q 015313          394 YWKLPKESRTLSSCLY  409 (409)
Q Consensus       394 Y~~~~~~t~~~~~g~~  409 (409)
                      |+++++.  +..||||
T Consensus       416 Y~~~~~~--~~~~g~~  429 (549)
T PRK07788        416 YTDGRDK--QIIDGLL  429 (549)
T ss_pred             ccCCCcc--cccCCce
Confidence            9999886  4578997

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.1e-52  Score=424.55  Aligned_cols=380  Identities=22%  Similarity=0.291  Sum_probs=289.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------------CC-----------ccccHHHHHHHHHHHHHHHhhCCCCccccccccc
Q 015313            2 EVFKAAYKKGSMARDSVAIRA------------DQ-----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~------------~~-----------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~   58 (409)
                      |+.+.|.+.++.+||++|+.+            ++           +++||+||.++++++|+.|.+             
T Consensus        59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-------------  125 (696)
T PLN02387         59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-------------  125 (696)
T ss_pred             CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-------------
Confidence            578999999999999999943            11           238999999999999999999             


Q ss_pred             ccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC
Q 015313           59 NSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA  138 (409)
Q Consensus        59 ~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  138 (409)
                          +|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.++++.++++++|++.+....+..+......
T Consensus       126 ----lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~  201 (696)
T PLN02387        126 ----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET  201 (696)
T ss_pred             ----hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC
Confidence                5999999999999999999999999999999999999999999999999999999999998877766665444331


Q ss_pred             -c-eeccCCCCCCCC-------Cc---cccc-----cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHH
Q 015313          139 -K-FSLIPPVPNVSS-------ET---TVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM  201 (409)
Q Consensus       139 -~-~~~~~~~~~~~~-------~~---~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~  201 (409)
                       . ++.+........       ..   ...+     ...........++|+++|+|||||||.||||++||++++..+..
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~  281 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG  281 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHH
Confidence             1 122211110000       00   0000     00001112345789999999999999999999999999988877


Q ss_pred             HHhhc-ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchH--------HHHHHHHhhcCCCCCCcccccee
Q 015313          202 LTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR--------GIWQRWRESYPVNGNRAGEAITA  272 (409)
Q Consensus       202 ~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~vt~  272 (409)
                      ....+ .+.++|++++.+|++|.+++.. .+..+..|+++.+.......        ..+..          +++++||+
T Consensus       282 ~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~----------i~~~~pT~  350 (696)
T PLN02387        282 VMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGD----------ASALKPTL  350 (696)
T ss_pred             HHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhh----------HHHhCCcE
Confidence            66553 5788999999999999999865 45567788888775542211        12223          77799999


Q ss_pred             eecchHHHHHHHHhhhhhhHH---------------------------------------HHHHhhhhhccceEEEeeCC
Q 015313          273 FTGVPTMYTRLIQGYEAMDTE---------------------------------------LQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       273 ~~~~P~~l~~l~~~~~~~~~~---------------------------------------~~~~~~~~~~~lr~v~~gG~  313 (409)
                      ++++|.+++.+.+........                                       ....+....+++|.+++||+
T Consensus       351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa  430 (696)
T PLN02387        351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA  430 (696)
T ss_pred             EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence            999999999997653211000                                       00011112268999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCC---CCc-cceEEEeCc
Q 015313          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSD---AAG-VGEICVKSP  388 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~---~~~-~Gel~v~g~  388 (409)
                      ++++++.+.++..+|++++++||+||+++.++.........+++|+|+|+++++|+| ++++..   .++ .|||+||||
T Consensus       431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp  510 (696)
T PLN02387        431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGP  510 (696)
T ss_pred             CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccC
Confidence            999999888887889999999999999865543333344678999999999999999 454322   222 699999999


Q ss_pred             chhhhhcCCCcccchhh--c--c--cC
Q 015313          389 SLFKEYWKLPKESRTLS--S--C--LY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~--~--g--~~  409 (409)
                      ++++|||++|++|++++  |  |  ||
T Consensus       511 ~v~~GY~~~pe~T~~~f~~d~~G~~W~  537 (696)
T PLN02387        511 SVTLGYFKNQEKTDEVYKVDERGMRWF  537 (696)
T ss_pred             cccchhcCCHHHHhhhhccccCCCcee
Confidence            99999999999999986  3  5  97

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.5e-52  Score=413.56  Aligned_cols=370  Identities=21%  Similarity=0.260  Sum_probs=299.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ++.+.|.+.++++|+++|+.+.. .++||+||.++++++|+.|.+                    .+||+|+|+++|+++
T Consensus        20 ~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~--------------------~~gd~Val~~~n~~e   79 (539)
T PRK06334         20 TVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK--------------------YPDQHIGIMMPASAG   79 (539)
T ss_pred             cHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh--------------------ccCCeEEEEcCCchH
Confidence            57889999999999999998765 799999999999999999976                    379999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhc---cCCceeccCCCCCC-CCCccc-
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK---SGAKFSLIPPVPNV-SSETTV-  155 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~-  155 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++.+....+.+....   .....+.+...... ...... 
T Consensus        80 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  159 (539)
T PRK06334         80 AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCR  159 (539)
T ss_pred             HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhh
Confidence            9999999999999999999999999999999999999999998877665544321   11111111110000 000000 


Q ss_pred             ----cccch-----hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHH
Q 015313          156 ----FDQSQ-----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (409)
Q Consensus       156 ----~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  226 (409)
                          .....     ........++++++|+|||||||.||+|.++|+++..........++.+.+|++++.+|++|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~  239 (539)
T PRK06334        160 IGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGF  239 (539)
T ss_pred             hhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhh
Confidence                00000     001123467899999999999999999999999999888877777888899999999999999998


Q ss_pred             HHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 015313          227 FNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (409)
Q Consensus       227 ~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~l  305 (409)
                      ...++.++..|+++++.. .+++..+++.          ++++++|++.++|.+++.+++...        ....++++|
T Consensus       240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l  301 (539)
T PRK06334        240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEM----------IDEAKVTFLGSTPVFFDYILKTAK--------KQESCLPSL  301 (539)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHHhhh--------hcccccccc
Confidence            766788999999999875 4788888888          788999999999999999987522        223467899


Q ss_pred             eEEEeeCCCCCHHHHHHHHHHh-CCcccccccccccccccccc-CCCCCCccccccccCCeEEEEeeCC-CCCCCCc-cc
Q 015313          306 RLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VG  381 (409)
Q Consensus       306 r~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~-~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~G  381 (409)
                      |.+++||+++++++.+++.+.+ ++.+++.||+||++.+++.. .......+++|+|+++++++|+|++ +++++.| .|
T Consensus       302 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~G  381 (539)
T PRK06334        302 RFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETG  381 (539)
T ss_pred             cEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceE
Confidence            9999999999999999999998 68999999999998665433 2223345679999999999999965 5778887 89


Q ss_pred             eEEEeCcchhhhhcCCCcccchh---hcccC
Q 015313          382 EICVKSPSLFKEYWKLPKESRTL---SSCLY  409 (409)
Q Consensus       382 el~v~g~~~~~gY~~~~~~t~~~---~~g~~  409 (409)
                      ||+++|++++.|||++|+.+...   .+|||
T Consensus       382 el~v~g~~~~~GY~~~~~~~~~~~~~~~~w~  412 (539)
T PRK06334        382 LVLTRGTSLFSGYLGEDFGQGFVELGGETWY  412 (539)
T ss_pred             EEEEecCcccccccCCcccccceeeCCceeE
Confidence            99999999999999999977644   26787

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.5e-52  Score=417.20  Aligned_cols=370  Identities=21%  Similarity=0.294  Sum_probs=289.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC-----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~-----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      ++.+.|.++++++||++|+++.     .+++||+||.++++++|++|.+.                 |+++||+|+++++
T Consensus        40 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-----------------Gv~~gd~Vai~~~  102 (614)
T PRK08180         40 RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDR-----------------GLSAERPLMILSG  102 (614)
T ss_pred             cHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEecC
Confidence            6788999999999999999874     26899999999999999999994                 8999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCC-----hHHHHHHHhcCCceEEEechh--HHHHHHHHhhccCCceeccCCCCCC
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYP-----ESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPVPNV  149 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~-----~~~~~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  149 (409)
                      |+++++++++||+++|++++|+++.++     .+++.++++.++++++|++..  ....+..... .....+........
T Consensus       103 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~  181 (614)
T PRK08180        103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVEVVAVRGAVPG  181 (614)
T ss_pred             CCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCceEEEecCCCCC
Confidence            999999999999999999999999988     789999999999999999854  2222222111 11111111110000


Q ss_pred             ---CCCccccccc----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccC--CCCeEEEecCc
Q 015313          150 ---SSETTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT--SADQFLHCLPL  220 (409)
Q Consensus       150 ---~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl  220 (409)
                         ..........    .........++++++|+|||||||.||+|.+||+++...+......+...  ..+++++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl  261 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPW  261 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecch
Confidence               0000000000    00111223568999999999999999999999999998888776666653  56899999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEEccC-cchH---HHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHH
Q 015313          221 HHVHGLFNALLAPLYAGATVEFMPK-FSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (409)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~---~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~  296 (409)
                      +|..+++..++.++..|+++++.+. +++.   .+++.          ++++++|+++++|.++..|++.++..+    .
T Consensus       262 ~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~~----~  327 (614)
T PRK08180        262 NHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRN----------LREISPTVYFNVPKGWEMLVPALERDA----A  327 (614)
T ss_pred             HHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHH----------HHHhCCcEEechHHHHHHHHHHHHhch----h
Confidence            9999987778889999999999763 4444   34444          778999999999999999987643211    2


Q ss_pred             HhhhhhccceEEEeeCCCCCHHHHHHHHHH----hC--CccccccccccccccccccCCCCCCccccccccCCeEEEEee
Q 015313          297 ASASAAKQLRLMMCGSSALPLPVMQQWETI----TG--HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE  370 (409)
Q Consensus       297 ~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~----~~--~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd  370 (409)
                      ....++++||.+++||+++++++.+++.+.    +|  +++++.||+||++.+++.........+++|+|+|+++++|+|
T Consensus       328 ~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d  407 (614)
T PRK08180        328 LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVP  407 (614)
T ss_pred             hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEec
Confidence            233467899999999999999999999875    33  688999999999866554333345678999999999999998


Q ss_pred             CCCCCCCCccceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          371 DESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       371 ~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++      .|||+++||+++.|||++|+.|++.+  ||||
T Consensus       408 ~~~------~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~  442 (614)
T PRK08180        408 VGG------KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYY  442 (614)
T ss_pred             CCC------CcEEEEecCccchhhcCChhHhHhhcccCCce
Confidence            643      49999999999999999999999986  7998

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-52  Score=422.44  Aligned_cols=383  Identities=23%  Similarity=0.335  Sum_probs=289.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC---------------------------CccccHHHHHHHHHHHHHHHhhCCCCccccc
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD---------------------------QKSYSYDQLASSALRISSLLCSNDLKTTSEK   54 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~---------------------------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~   54 (409)
                      ++.+.|.++++.+||++|+.+.                           .+++||+||.++++++|+.|.+         
T Consensus        70 t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~---------  140 (700)
T PTZ00216         70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE---------  140 (700)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH---------
Confidence            5789999999999999999872                           4789999999999999999999         


Q ss_pred             ccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhh
Q 015313           55 TKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS  134 (409)
Q Consensus        55 ~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~  134 (409)
                              +|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.....
T Consensus       141 --------~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~  212 (700)
T PTZ00216        141 --------LGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMK  212 (700)
T ss_pred             --------hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhh
Confidence                    499999999999999999999999999999999999999999999999999999999999876654443322


Q ss_pred             cc--C-CceeccCCCCCCCC--------Ccccc-----ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHH
Q 015313          135 KS--G-AKFSLIPPVPNVSS--------ETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ  198 (409)
Q Consensus       135 ~~--~-~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~  198 (409)
                      ..  . ...+.+........        .....     ............++|+++|+|||||||.||||++||+++++.
T Consensus       213 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~  292 (700)
T PTZ00216        213 SGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG  292 (700)
T ss_pred             hccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence            11  1 12222211110000        00000     000001112345789999999999999999999999999988


Q ss_pred             HHHHHhhc-----ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceee
Q 015313          199 VQMLTEAW-----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF  273 (409)
Q Consensus       199 ~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~  273 (409)
                      +......+     ...++|++++.+|++|.+++.. ....+..|+++++.   ++..+.+.+..   ....+++++||++
T Consensus       293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~---~~~~l~~~~pT~~  365 (700)
T PTZ00216        293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFAR---PHGDLTEFRPVFL  365 (700)
T ss_pred             HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhcc---ccchHHHcCCcEE
Confidence            87765443     2367899999999999999854 55567888887763   34444432110   0011677999999


Q ss_pred             ecchHHHHHHHHhhhhhhHH---------------------------------HHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          274 TGVPTMYTRLIQGYEAMDTE---------------------------------LQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       274 ~~~P~~l~~l~~~~~~~~~~---------------------------------~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      .++|.+++.+.+........                                 +...+....+++|.+++||+++++++.
T Consensus       366 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~  445 (700)
T PTZ00216        366 IGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQ  445 (700)
T ss_pred             EechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            99999999987653211100                                 000111122689999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCC--CCCc-cceEEEeCcchhhhhcCC
Q 015313          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       321 ~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~--~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      +.++..++ +++++||+||+++..+.........+++|+|+|+++++|+|.++..  .+++ .|||+|+||+++.|||++
T Consensus       446 ~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~  524 (700)
T PTZ00216        446 EFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQ  524 (700)
T ss_pred             HHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCC
Confidence            88887778 9999999999986655433344567899999999999999987632  3334 799999999999999999


Q ss_pred             Ccccchhh--cccC
Q 015313          398 PKESRTLS--SCLY  409 (409)
Q Consensus       398 ~~~t~~~~--~g~~  409 (409)
                      |++|++.+  ||||
T Consensus       525 pe~T~~~f~~dGw~  538 (700)
T PTZ00216        525 EELTREVLDEDGWF  538 (700)
T ss_pred             hhHhhhhccccCCe
Confidence            99999985  7997

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=9e-52  Score=409.65  Aligned_cols=373  Identities=22%  Similarity=0.320  Sum_probs=307.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      ++.+.|.+.++.+|+++|+++..      +.+||+||+++++++|++|.+.                 |+++||+|++++
T Consensus        25 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~Val~~   87 (547)
T PRK13295         25 TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARL-----------------GVGRGDVVSCQL   87 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEC
Confidence            67889999999999999999865      8999999999999999999994                 899999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhccC-CceeccCCCCCC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSG-AKFSLIPPVPNV  149 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~  149 (409)
                      +|+++++++++|++++|++++|+++..+.+++.++++.++++++++++++     .+.+.++..... ............
T Consensus        88 ~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (547)
T PRK13295         88 PNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGA  167 (547)
T ss_pred             CCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCc
Confidence            99999999999999999999999999999999999999999999998754     222222222221 111111110000


Q ss_pred             CCCccc---------cccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCc
Q 015313          150 SSETTV---------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPL  220 (409)
Q Consensus       150 ~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl  220 (409)
                      ......         .............++++++++|||||||.||+|.++|+++...+......+++.++|++++..|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~  247 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM  247 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence            000000         00000001122356899999999999999999999999999988888888889999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhh
Q 015313          221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (409)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  300 (409)
                      +|..+++..++.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+....        ...
T Consensus       248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~~--------~~~  309 (547)
T PRK13295        248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL----------IRTEGVTFTMASTPFLTDLTRAVKE--------SGR  309 (547)
T ss_pred             hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhcccc--------cCC
Confidence            9999988889999999999999998899999988          7889999999999999999875321        234


Q ss_pred             hhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC--CCCccccccccCCeEEEEeeCCCCCCCC
Q 015313          301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDAA  378 (409)
Q Consensus       301 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~--~~~~~~~G~p~~~~~~~ivd~~~~~~~~  378 (409)
                      .++++|.+++||+++++++.+++.+.+++++++.||+||++.+.......  .....++|+|+++++++|+|+++++++.
T Consensus       310 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~  389 (547)
T PRK13295        310 PVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPA  389 (547)
T ss_pred             CcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCC
Confidence            57889999999999999999999999999999999999998765443321  2335678999999999999999998888


Q ss_pred             c-cceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          379 G-VGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       379 ~-~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      | .|||+++|++++.||+++|+.|++..||||
T Consensus       390 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  421 (547)
T PRK13295        390 GQIGRLQVRGCSNFGGYLKRPQLNGTDADGWF  421 (547)
T ss_pred             CCCCeEEEEcCcccccccCCccccccCCCCCe
Confidence            7 899999999999999999999998899998

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=7.3e-52  Score=417.25  Aligned_cols=375  Identities=19%  Similarity=0.271  Sum_probs=295.2

Q ss_pred             hH-HHHHHHhcc-cCCCeeEEEeC------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEE
Q 015313            2 EV-FKAAYKKGS-MARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI   73 (409)
Q Consensus         2 ~~-~~~l~~~~~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l   73 (409)
                      |+ ...|.+++. .+|+++|+++.      .+++||+||.+++.++|+.|++                 +|+++||+|+|
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i  150 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-----------------VGVKKGDAVVI  150 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence            44 345556665 48999999873      3689999999999999999999                 49999999999


Q ss_pred             EeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHH---------HHHHHhhcc---CC--c
Q 015313           74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE---------VLQNVASKS---GA--K  139 (409)
Q Consensus        74 ~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~---~~--~  139 (409)
                      +++|++++++++|||+++|++++|+++.++.+++..++++++++++|+++....         .+.......   ..  .
T Consensus       151 ~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  230 (666)
T PLN02654        151 YLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVG  230 (666)
T ss_pred             EcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCcc
Confidence            999999999999999999999999999999999999999999999999876431         122211110   00  0


Q ss_pred             -eeccCCCCCC---C-CCc---c--ccccch----hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH-HHHHHHh
Q 015313          140 -FSLIPPVPNV---S-SET---T--VFDQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTE  204 (409)
Q Consensus       140 -~~~~~~~~~~---~-~~~---~--~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~  204 (409)
                       ..........   . ...   .  ..+...    ........++++++|+|||||||.||||+++|++++. .......
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~  310 (666)
T PLN02654        231 ICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY  310 (666)
T ss_pred             EEEEecccccccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHH
Confidence             0000100000   0 000   0  000000    0011124678999999999999999999999999864 3445566


Q ss_pred             hcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHH
Q 015313          205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY  280 (409)
Q Consensus       205 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l  280 (409)
                      .++++++|++++..|++|..++...++.+|+.|+++++.++    +++..+++.          ++++++|+++++|+++
T Consensus       311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~  380 (666)
T PLN02654        311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDI----------VDKYKVTIFYTAPTLV  380 (666)
T ss_pred             hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHH
Confidence            77889999999999999999987778899999999999874    467888888          8889999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccCC--CCCCcc
Q 015313          281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAG  355 (409)
Q Consensus       281 ~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~~--~~~~~~  355 (409)
                      +.|.+....      .....++++||.++++|+++++++.+++.+.+|   +++.+.||+||+++.......  ...+++
T Consensus       381 ~~l~~~~~~------~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~g  454 (666)
T PLN02654        381 RSLMRDGDE------YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG  454 (666)
T ss_pred             HHHHhhCcc------ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCC
Confidence            999875211      123356789999999999999999999999997   689999999999866543322  245678


Q ss_pred             ccccccCCeEEEEeeCCCCCCCCc-cceEEEeC--cchhhhhcCCCcccchh----hcccC
Q 015313          356 TVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESRTL----SSCLY  409 (409)
Q Consensus       356 ~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~  409 (409)
                      ++|.|+||++++|+|++|++++++ .|||++++  |+++.|||+||+++++.    ++|||
T Consensus       455 s~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~  515 (666)
T PLN02654        455 SATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYY  515 (666)
T ss_pred             ccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEE
Confidence            999999999999999999998887 79999999  79999999999999876    38987

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-51  Score=406.97  Aligned_cols=371  Identities=25%  Similarity=0.365  Sum_probs=307.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.+.++.+|+++|+++.++++||+||.+++.++|..|.+.                +|+++|++|+++++|+++
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~----------------~g~~~g~~V~i~~~~~~~   73 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQE----------------CGVRKGDRVLLYMQNSPQ   73 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCChH
Confidence            4688999999999999999999999999999999999999999984                388999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC-------C---
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-------S---  150 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---  150 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++++..+.+....................       .   
T Consensus        74 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (546)
T PRK08314         74 FVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPA  153 (546)
T ss_pred             HHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccc
Confidence            999999999999999999999999999999999999999999887766655433222111111000000       0   


Q ss_pred             -----------------CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCe
Q 015313          151 -----------------SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ  213 (409)
Q Consensus       151 -----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~  213 (409)
                                       .+................++++++++|||||||.||+|.++|++++..+......+.+..+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~  233 (546)
T PRK08314        154 WLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESV  233 (546)
T ss_pred             ccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCce
Confidence                             000000000011122345689999999999999999999999999999888888888899999


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHH
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE  293 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~  293 (409)
                      +++.+|++|..|++..++.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+++...     
T Consensus       234 ~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~ll~~~~-----  298 (546)
T PRK08314        234 VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----------IERYRVTHWTNIPTMVVDFLASPG-----  298 (546)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH----------HHHhcCceecccHHHHHHHHhCCC-----
Confidence            99999999999998888899999999999999999988888          778999999999999998876421     


Q ss_pred             HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeC-C
Q 015313          294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED-E  372 (409)
Q Consensus       294 ~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~  372 (409)
                         ....+++++|.+++||+++++++.+++.+.++.++++.||+||++.............+++|.|+++++++|+|+ +
T Consensus       299 ---~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~  375 (546)
T PRK08314        299 ---LAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPET  375 (546)
T ss_pred             ---ccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCC
Confidence               123456789999999999999999999999999999999999998766544433345678999999999999995 5


Q ss_pred             CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          373 SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       373 ~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                      ++.++.| .|||+++|++++.||+++++.|++.+
T Consensus       376 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f  409 (546)
T PRK08314        376 LEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF  409 (546)
T ss_pred             CcCCCCCCceEEEEECCchhccccCChhHhhhhh
Confidence            6778777 89999999999999999999998874

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.7e-51  Score=407.26  Aligned_cols=370  Identities=22%  Similarity=0.328  Sum_probs=296.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      |+.+.|.+.++++|+++|++++++.+||+||.++++++|++|.+.                 |+++||+|+++++|++++
T Consensus         8 ~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-----------------Gv~~gd~V~v~~~n~~~~   70 (563)
T PLN02860          8 HICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRL-----------------GLRNGDVVAIAALNSDLY   70 (563)
T ss_pred             HHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHHH
Confidence            688999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHh-hccCC-ceeccCCCCC---------CC
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGA-KFSLIPPVPN---------VS  150 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~---------~~  150 (409)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++.......+. ..... ...+......         ..
T Consensus        71 ~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  150 (563)
T PLN02860         71 LEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFL  150 (563)
T ss_pred             HHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhcc
Confidence            9999999999999999999999999999999999999999876533332221 11111 1111100000         00


Q ss_pred             CCcccccc--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 015313          151 SETTVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (409)
Q Consensus       151 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  228 (409)
                      ........  ..........++++++++|||||||.||+|.++|+++..........+++.++|+++...|++|..++. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-  229 (563)
T PLN02860        151 TTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-  229 (563)
T ss_pred             ccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHH-
Confidence            00000000  000001123568999999999999999999999999988777776777888999999999999999985 


Q ss_pred             HHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEE
Q 015313          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (409)
Q Consensus       229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v  308 (409)
                      .++.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+++....      ......++++|.+
T Consensus       230 ~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~  293 (563)
T PLN02860        230 SALAMLMVGACHVLLPKFDAKAALQA----------IKQHNVTSMITVPAMMADLISLTRK------SMTWKVFPSVRKI  293 (563)
T ss_pred             HHHHHHHcCceEEecCCCCHHHHHHH----------HHHhCCeeEEeChHHHHHHHHhhhh------hhccccccceeEE
Confidence            47889999999999999999999888          7889999999999999999875211      1122457899999


Q ss_pred             EeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccC-CC----------------------CCCccccccccCCe
Q 015313          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-RG----------------------ARKAGTVGNPLPGV  364 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-~~----------------------~~~~~~~G~p~~~~  364 (409)
                      ++||+++++++.+++++.| ++++++.||+||+++.+.... ..                      .....++|+|+|++
T Consensus       294 ~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~  373 (563)
T PLN02860        294 LNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV  373 (563)
T ss_pred             EeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc
Confidence            9999999999999999998 789999999999875443211 00                      11233689999999


Q ss_pred             EEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          365 QVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       365 ~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++|+|++    ++..|||+++||+++.|||++|+.|++.+  ||||
T Consensus       374 ~v~i~~~~----~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        374 ELKIGLDE----SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             EEEEecCC----CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence            99999976    33489999999999999999999999874  7897

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.1e-51  Score=408.98  Aligned_cols=373  Identities=21%  Similarity=0.243  Sum_probs=285.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      ++.+.|+++++.+||++|+++.+      +.+||+||.++++++|++|.+.                 |+++||+|++++
T Consensus        50 ~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-----------------Gv~~gd~V~i~~  112 (624)
T PRK12582         50 SIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDL-----------------GLDPGRPVMILS  112 (624)
T ss_pred             CHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEec
Confidence            67889999999999999998743      6899999999999999999984                 899999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCCh-----HHHHHHHhcCCceEEEechhH-H-HHHHHHhhccCCceeccCCCCC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPE-----SELLHVMHDSDISMVLSTEDY-R-EVLQNVASKSGAKFSLIPPVPN  148 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~-----~~~~~~l~~~~~~~vi~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  148 (409)
                      +|+++++++++||+++|++++|+++.++.     +++.++++.++++++|+++.. . ..+... .......+.......
T Consensus       113 ~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~  191 (624)
T PRK12582        113 GNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAAL-DLLDVTVVHVTGPGE  191 (624)
T ss_pred             CCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhh-hhcCceEEEEcCCCc
Confidence            99999999999999999999999999875     899999999999999998642 1 222211 111122222111100


Q ss_pred             C---CCCccccccc----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCC---CCeEEEec
Q 015313          149 V---SSETTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS---ADQFLHCL  218 (409)
Q Consensus       149 ~---~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~d~~l~~~  218 (409)
                      .   ..........    .........++++++|+|||||||.||+|.+||+++...+...........   .++++.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~l  271 (624)
T PRK12582        192 GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWM  271 (624)
T ss_pred             ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEec
Confidence            0   0000000000    001112245689999999999999999999999999987776655444443   57999999


Q ss_pred             CchhHHHHHHHHHHHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHH
Q 015313          219 PLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (409)
Q Consensus       219 pl~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~  297 (409)
                      |++|.+|+...++.++..|+++++.+. +.+..+.+.+..       ++++++|+++++|.++..|++.+...+    ..
T Consensus       272 Pl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~-------i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~  340 (624)
T PRK12582        272 PWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRN-------LREISPTVYGNVPAGYAMLAEAMEKDD----AL  340 (624)
T ss_pred             hHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHH-------HHhcCCeEEeccCHHHHHHHHHHhhCH----HH
Confidence            999999987777888999999999763 333333333222       778999999999999999877543211    12


Q ss_pred             hhhhhccceEEEeeCCCCCHHHHHHHHHHh----C--CccccccccccccccccccCCCCCCccccccccCCeEEEEeeC
Q 015313          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT----G--HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED  371 (409)
Q Consensus       298 ~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~----~--~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~  371 (409)
                      ...++++||.+++||+++++++.+++.+.+    |  +++++.||+||++.++........+.+++|+|+||++++|++.
T Consensus       341 ~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~  420 (624)
T PRK12582        341 RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPV  420 (624)
T ss_pred             HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccC
Confidence            334678999999999999999999998863    3  6899999999998765532323456789999999999999742


Q ss_pred             CCCCCCCccceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          372 ESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       372 ~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                            ++.|||+|+||+++.|||++|++|++.+  ||||
T Consensus       421 ------G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~  454 (624)
T PRK12582        421 ------GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFY  454 (624)
T ss_pred             ------CCceEEEEECCcccccccCCccchhhhcCccCCc
Confidence                  1269999999999999999999999885  7998

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-51  Score=401.35  Aligned_cols=371  Identities=16%  Similarity=0.230  Sum_probs=304.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.+.++++||++|++++++++||+||.++++++|++|.+.                 |+++|++|+++++|++++
T Consensus        44 ~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------g~~~g~~V~i~~~n~~~~  106 (537)
T PRK13382         44 GPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQAL-----------------PIGEPRVVGIMCRNHRGF  106 (537)
T ss_pred             CHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEecCcHHH
Confidence            577889999999999999999999999999999999999999984                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-Cc-eeccCCCCCCCCCccccccc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AK-FSLIPPVPNVSSETTVFDQS  159 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  159 (409)
                      +++++||+++|++++|+++.++.+++.+++++++++++|++.+....+........ .. ...+................
T Consensus       107 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T PRK13382        107 VEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAH  186 (537)
T ss_pred             HHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhcc
Confidence            99999999999999999999999999999999999999999877665544322211 11 11111110000000000000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      . .......+++.++++|||||||.||+|.++|+++..........+....+++++...|++|..++. .++.++..|++
T Consensus       187 ~-~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~  264 (537)
T PRK13382        187 A-GQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFS-QLVLAASLACT  264 (537)
T ss_pred             C-cCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHH-HHHHHHhcCcE
Confidence            0 001122457899999999999999999999999988888777777888899999999999999984 58888999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++...+++..+++.          ++++++|++.++|.+++.+++....      .....+++++|.+++||+++++++
T Consensus       265 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~l~~~~  328 (537)
T PRK13382        265 IVTRRRFDPEATLDL----------IDRHRATGLAVVPVMFDRIMDLPAE------VRNRYSGRSLRFAAASGSRMRPDV  328 (537)
T ss_pred             EEECCCcCHHHHHHH----------HHHhCCEEEEehHHHHHHHHcCCch------hcccCCccceeEEEEcCCCCCHHH
Confidence            999999999999988          7889999999999999999774211      112234578999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccccCC-CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      ++.|.+.++.++++.||+||++.++..... .....+++|+|+++++++|+|+++++++.| .|||+++||+++.||+  
T Consensus       329 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--  406 (537)
T PRK13382        329 VIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--  406 (537)
T ss_pred             HHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--
Confidence            999999999999999999999876553322 234677999999999999999999999888 7999999999999998  


Q ss_pred             CcccchhhcccC
Q 015313          398 PKESRTLSSCLY  409 (409)
Q Consensus       398 ~~~t~~~~~g~~  409 (409)
                      |+.+....||||
T Consensus       407 ~~~~~~~~~g~~  418 (537)
T PRK13382        407 SGSTKDFHDGFM  418 (537)
T ss_pred             ccchhhccCCCE
Confidence            677777789997

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-50  Score=397.35  Aligned_cols=366  Identities=24%  Similarity=0.382  Sum_probs=308.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.+.++.+||++|++++++.+||+||+++++++|+.|++.                +|+.+|++|+++++|++++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~----------------~g~~~~~~V~i~~~~~~~~   66 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYE----------------LNVKKGERIAILSQNSLEY   66 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            467899999999999999999999999999999999999999863                5899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCCCCCCccccccch
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      +++++||+++|++++|+++..+.+++..+++++++++++++++..+.+.......... ...+........       ..
T Consensus        67 ~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  139 (496)
T PRK06839         67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIED-------RK  139 (496)
T ss_pred             HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhhhc-------cC
Confidence            9999999999999999999999999999999999999999988776665554332211 111111111000       00


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++++|||||||.||+|.++|+++..........++...+|++++.+|++|..++....+.++..|+++
T Consensus       140 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~  219 (496)
T PRK06839        140 IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVI  219 (496)
T ss_pred             CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEE
Confidence            01122345688999999999999999999999999876666666778889999999999999999877678889999999


Q ss_pred             EEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      ++.+.+++..+++.          ++++++|.+.++|.+++.+++...        ....+++++|.+++||+++++++.
T Consensus       220 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~  281 (496)
T PRK06839        220 IVPRKFEPTKALSM----------IEKHKVTVVMGVPTIHQALINCSK--------FETTNLQSVRWFYNGGAPCPEELM  281 (496)
T ss_pred             EEccCCCHHHHHHH----------HHhhCCeEEEehHHHHHHHHhCcc--------cccCCCcccceEEECCCCCCHHHH
Confidence            99999999999988          788999999999999999987532        123467899999999999999999


Q ss_pred             HHHHHHhCCcccccccccccccccccc--CCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          321 QQWETITGHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       321 ~~~~~~~~~~v~~~YG~tE~g~~~~~~--~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      +.+.+. |+++.+.||+||++......  .......+++|+|+++++++|+|++++.++.| .|||+++|++++.|||++
T Consensus       282 ~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  360 (496)
T PRK06839        282 REFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNR  360 (496)
T ss_pred             HHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCC
Confidence            999887 99999999999998654322  22235678899999999999999999988877 899999999999999999


Q ss_pred             Ccccchh-hcccC
Q 015313          398 PKESRTL-SSCLY  409 (409)
Q Consensus       398 ~~~t~~~-~~g~~  409 (409)
                      |+.++.. .+|||
T Consensus       361 ~~~~~~~~~~g~~  373 (496)
T PRK06839        361 PDATEETIQDGWL  373 (496)
T ss_pred             hHHHHHHHcCCCe
Confidence            9999887 67887

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-50  Score=401.96  Aligned_cols=374  Identities=23%  Similarity=0.367  Sum_probs=301.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      |+.+.|++.++.+|+++|++++++.+||+||.+++.++|+.|.+.                .|+++||+|+++++|++++
T Consensus        25 ~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~----------------~gi~~gd~Vai~~~n~~~~   88 (562)
T PRK05677         25 NIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQH----------------TDLKPGDRIAVQLPNVLQY   88 (562)
T ss_pred             cHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            678899999999999999999999999999999999999999863                3889999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCC----------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS----------  151 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  151 (409)
                      ++++|||+++|++++|+++..+.+++.+++++++++++|++.+....+.+.....+..............          
T Consensus        89 ~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
T PRK05677         89 PVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAV  168 (562)
T ss_pred             HHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccc
Confidence            9999999999999999999999999999999999999999887766555443332222221111000000          


Q ss_pred             ---------------Cccccc---c--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc--cC
Q 015313          152 ---------------ETTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YT  209 (409)
Q Consensus       152 ---------------~~~~~~---~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~  209 (409)
                                     .....+   .  ..........++++++++|||||||.||+|.++|+++...+......+.  ..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK05677        169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN  248 (562)
T ss_pred             hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence                           000000   0  0000112235689999999999999999999999999887665554433  33


Q ss_pred             -CCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhh
Q 015313          210 -SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (409)
Q Consensus       210 -~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~  287 (409)
                       ..+.+++.+|++|..++...++..+..|++.++.+ ..++..+++.          ++++++|.++++|.++..+++..
T Consensus       249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  318 (562)
T PRK05677        249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE----------LGKWKFSGFVGLNTLFVALCNNE  318 (562)
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH----------HHHcCceEEecHHHHHHHHHhCc
Confidence             34688999999999998766778888888777665 4677888887          78899999999999999887641


Q ss_pred             hhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEE
Q 015313          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK  367 (409)
Q Consensus       288 ~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~  367 (409)
                      .        ....+++++|.+++||+++++++.++|.+.+++++++.||+||++.++.........++++|.|+++++++
T Consensus       319 ~--------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~  390 (562)
T PRK05677        319 A--------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCK  390 (562)
T ss_pred             c--------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEE
Confidence            1        12234678999999999999999999999999999999999999876654444445667899999999999


Q ss_pred             EeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       368 ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |+|+++++++.| .|||+++||+++.|||++|++|++.+  ||||
T Consensus       391 i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  435 (562)
T PRK05677        391 VIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWL  435 (562)
T ss_pred             EECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcc
Confidence            999999999888 89999999999999999999999884  7897

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-50  Score=398.48  Aligned_cols=374  Identities=27%  Similarity=0.405  Sum_probs=312.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.+.++.+|+++|++++++++||+||++++.++|..|.+.                 |+++||+|+++++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gv~~g~~V~l~~~~~~~   67 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAAL-----------------GIGKGDRVAIWAPNSPH   67 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChH
Confidence            4678999999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-ceecc-CCCCCCCC------C
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLI-PPVPNVSS------E  152 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~------~  152 (409)
                      ++++++||+++|++++|+++..+.+++..++++++++++++++.....+......... ..+.. ........      .
T Consensus        68 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (513)
T PRK07656         68 WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTF  147 (513)
T ss_pred             HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccH
Confidence            9999999999999999999999999999999999999999998876655544332221 11111 11111000      0


Q ss_pred             ccccccc-hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 015313          153 TTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~  231 (409)
                      ....... ..........+++++++|||||||.||+|.++|.++...+......++..++|++++.+|++|.+++...++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (513)
T PRK07656        148 TDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN  227 (513)
T ss_pred             HHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence            0000000 001122346688999999999999999999999999998888888889999999999999999999887889


Q ss_pred             HHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+....        ....++++|.+++|
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~  289 (513)
T PRK07656        228 APLMRGATILPLPVFDPDEVFRL----------IETERITVLPGPPTMYNSLLQHPDR--------SAEDLSSLRLAVTG  289 (513)
T ss_pred             HHHHcCceEEecCcCCHHHHHHH----------HHHhCCeEEechHHHHHHHHcCCCc--------CCCCccceeeEEec
Confidence            99999999999988899999988          7789999999999999999886432        22357889999999


Q ss_pred             CCCCCHHHHHHHHHHhCC-ccccccccccccccccccCC-CCCC--ccccccccCCeEEEEeeCCCCCCCCc-cceEEEe
Q 015313          312 SSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLR-GARK--AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK  386 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~-~~~~--~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~  386 (409)
                      |+++++++.+.+.+.++. .+++.||+||++++...+.. ....  .+++|.|+++++++|+|+++++++.| .|||+++
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~  369 (513)
T PRK07656        290 AASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVR  369 (513)
T ss_pred             CCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEE
Confidence            999999999999999998 99999999999866554332 2222  67899999999999999999999888 8999999


Q ss_pred             CcchhhhhcCCCcccchhh--cccC
Q 015313          387 SPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       387 g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |++++.||+++++.+...+  ||||
T Consensus       370 ~~~~~~gy~~~~~~~~~~~~~~~~~  394 (513)
T PRK07656        370 GPNVMKGYYDDPEATAAAIDADGWL  394 (513)
T ss_pred             cchhhhhhcCCHHHHhhhhccCCce
Confidence            9999999999999998874  7887

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.7e-50  Score=406.30  Aligned_cols=379  Identities=21%  Similarity=0.295  Sum_probs=284.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----C-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      |+.+.|.+.++.+|+++|+.+.    +     +++||+||.++++++|+.|.+.                 |+++||+|+
T Consensus        43 t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-----------------Gv~~gd~V~  105 (660)
T PLN02430         43 TAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRAS-----------------GAEPGSRVG  105 (660)
T ss_pred             CHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence            5788999999999999999642    1     3479999999999999999994                 999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-HHHHHHhhccC-Cc-eeccCCCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-EVLQNVASKSG-AK-FSLIPPVPNV  149 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~  149 (409)
                      |+++|++||+++++||+++|++++|+++.++++++.++++.++++++|++.+.. ..+........ .. ++.+......
T Consensus       106 i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  185 (660)
T PLN02430        106 IYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEE  185 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChH
Confidence            999999999999999999999999999999999999999999999999987543 23322211111 11 1111110000


Q ss_pred             C------------CCccccccc--hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh-----cccCC
Q 015313          150 S------------SETTVFDQS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-----WEYTS  210 (409)
Q Consensus       150 ~------------~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-----~~~~~  210 (409)
                      .            .........  .........++|+++|+|||||||.||||.+||+++...+......     ..++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~  265 (660)
T PLN02430        186 ESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH  265 (660)
T ss_pred             HhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCC
Confidence            0            000000000  0001122357899999999999999999999999999877665332     14678


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       211 ~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      +|++++.+|++|.+++.. .+.++..|+++++... ++..+++.          +.+++||++.++|.+++.+.+.....
T Consensus       266 ~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~----------l~~~~pt~~~~vP~~~~~l~~~i~~~  333 (660)
T PLN02430        266 DDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDD----------LMELKPTLLAGVPRVFERIHEGIQKA  333 (660)
T ss_pred             CCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHH----------HHHhCCcEEEecHHHHHHHHHHHHHH
Confidence            899999999999999876 4557899999988764 66777777          67789999999999999887643210


Q ss_pred             hHH-------------------------------------HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCcccc
Q 015313          291 DTE-------------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE  333 (409)
Q Consensus       291 ~~~-------------------------------------~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~  333 (409)
                      ...                                     ....+....+++|.+++||+++++++.+.++...++.+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~  413 (660)
T PLN02430        334 LQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQ  413 (660)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeee
Confidence            000                                     0011111237899999999999999866555443478999


Q ss_pred             ccccccccccccc-cCCCCCCccccccccCCeEEEEeeC--CC-CCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcc
Q 015313          334 RYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAED--ES-GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSC  407 (409)
Q Consensus       334 ~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd~--~~-~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g  407 (409)
                      .||+||++++.+. .+......+++|.|.|+++++++|.  .+ .+.+.+ .|||+|+||+++.|||++|++|+++ .||
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dG  493 (660)
T PLN02430        414 GYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDG  493 (660)
T ss_pred             ecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhcc
Confidence            9999999865543 3333345789999999999999873  23 233444 6999999999999999999999998 599


Q ss_pred             cC
Q 015313          408 LY  409 (409)
Q Consensus       408 ~~  409 (409)
                      ||
T Consensus       494 w~  495 (660)
T PLN02430        494 WF  495 (660)
T ss_pred             ce
Confidence            98

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-51  Score=410.38  Aligned_cols=375  Identities=17%  Similarity=0.167  Sum_probs=286.8

Q ss_pred             HHHHHHhccc--CCCeeEEEeC------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            4 FKAAYKKGSM--ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         4 ~~~l~~~~~~--~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      .+.+.++++.  +||++|+++.      .+++||+||.++++++|+.|++                 +|+++||+|++++
T Consensus        62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GDrV~i~~  124 (647)
T PTZ00237         62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-----------------LNISKNDNVLIYM  124 (647)
T ss_pred             HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence            3455666654  7999999873      3589999999999999999999                 4999999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh---------HHHHHHHHhhccC---Cceecc
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED---------YREVLQNVASKSG---AKFSLI  143 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~---~~~~~~  143 (409)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+........   ..++..
T Consensus       125 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  204 (647)
T PTZ00237        125 ANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITL  204 (647)
T ss_pred             CCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999752         2233333222111   111111


Q ss_pred             CCCCC--------------CCCCcccccc---------chhhhccCCCCCCcEEEEecCCCCCCCceeeechHH-HHHHH
Q 015313          144 PPVPN--------------VSSETTVFDQ---------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQV  199 (409)
Q Consensus       144 ~~~~~--------------~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~  199 (409)
                      .....              ........+.         ..........++++++|+|||||||.||||+++|.+ +....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~  284 (647)
T PTZ00237        205 FRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLK  284 (647)
T ss_pred             EcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHH
Confidence            10000              0000000000         000011234678999999999999999999999998 44433


Q ss_pred             HHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCc--c----hHHHHHHHHhhcCCCCCCccccceee
Q 015313          200 QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF--S----VRGIWQRWRESYPVNGNRAGEAITAF  273 (409)
Q Consensus       200 ~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~--~----~~~~~~~~~~~~~~~~~i~~~~vt~~  273 (409)
                      ...........+|++++..|++|+.++. .++.++..|+++++.++.  .    +..+++.          ++++++|++
T Consensus       285 ~~~~~~~~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~----------i~~~~vt~~  353 (647)
T PTZ00237        285 YYWRSIIEKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNT----------IEKHKVTHT  353 (647)
T ss_pred             HHHHHhcCCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHH----------HHHhCeEEE
Confidence            3334455667789999999999987664 488899999999998751  2    5677777          888999999


Q ss_pred             ecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCcccccccccccccccccc-CCCCC
Q 015313          274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGAR  352 (409)
Q Consensus       274 ~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~~~~  352 (409)
                      .++|++++.+++......   ......++++||.+++||+++++++.+++.+.+|+++++.||+||+++..... .....
T Consensus       354 ~~~P~~~~~l~~~~~~~~---~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~  430 (647)
T PTZ00237        354 LTLPKTIRYLIKTDPEAT---IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINI  430 (647)
T ss_pred             EeCHHHHHHHHhhCcccc---ccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCC
Confidence            999999999987421100   00123468899999999999999999999999999999999999998654432 22233


Q ss_pred             CccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc---chhhhhcCCCcccchhh---cccC
Q 015313          353 KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP---SLFKEYWKLPKESRTLS---SCLY  409 (409)
Q Consensus       353 ~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~---~~~~gY~~~~~~t~~~~---~g~~  409 (409)
                      ..+++|+|+|+++++|+|++|++++.| .|||+++||   +++.|||++|++|++.+   +|||
T Consensus       431 ~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~  494 (647)
T PTZ00237        431 PYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYY  494 (647)
T ss_pred             CCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEE
Confidence            458899999999999999999998777 899999986   88999999999998765   6887

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.3e-50  Score=406.57  Aligned_cols=371  Identities=23%  Similarity=0.342  Sum_probs=293.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI   73 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~--------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l   73 (409)
                      |+.+.|.++++.+||++|+++        ..+++||+||.+++.++|+.|.+                 +|+++||+|++
T Consensus        26 t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-----------------~Gi~~gd~V~i   88 (632)
T PRK07529         26 STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-----------------LGVGPGDVVAF   88 (632)
T ss_pred             CHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence            678999999999999999986        35799999999999999999999                 49999999999


Q ss_pred             EeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhccCC-cee-ccCCC
Q 015313           74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFS-LIPPV  146 (409)
Q Consensus        74 ~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~-~~~~~  146 (409)
                      +++|++++++++|||+++| +++|+++.++++++.++++.++++++|++...     ...+......... ..+ .+...
T Consensus        89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (632)
T PRK07529         89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA  167 (632)
T ss_pred             ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence            9999999999999999999 56999999999999999999999999997542     2333333222221 111 11110


Q ss_pred             CCCC----------------CCccccccch------hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh
Q 015313          147 PNVS----------------SETTVFDQSQ------AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE  204 (409)
Q Consensus       147 ~~~~----------------~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~  204 (409)
                      ....                ......+...      ........++++++++|||||||.||+|.++|++++........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~  247 (632)
T PRK07529        168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL  247 (632)
T ss_pred             ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence            0000                0000000000      00111235689999999999999999999999999988877777


Q ss_pred             hcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCc--c----hHHHHHHHHhhcCCCCCCccccceeeecchH
Q 015313          205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF--S----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT  278 (409)
Q Consensus       205 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~--~----~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~  278 (409)
                      .+.+.++|++++.+|++|..+++..++.++..|+++++.+..  .    ...+++.          ++++++|++.++|+
T Consensus       248 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~  317 (632)
T PRK07529        248 LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKI----------VERYRINFLSGVPT  317 (632)
T ss_pred             hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHH----------HHHhCCeEEEeHHH
Confidence            778889999999999999999887889999999999998642  1    2455555          78899999999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC-CCCCCcccc
Q 015313          279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTV  357 (409)
Q Consensus       279 ~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~  357 (409)
                      ++..+++...         ...++++||.+++||+++++++.+++++.+++++++.||+||+++++.... ......+++
T Consensus       318 ~~~~l~~~~~---------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~sv  388 (632)
T PRK07529        318 VYAALLQVPV---------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSV  388 (632)
T ss_pred             HHHHHHhCcc---------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCc
Confidence            9999987521         224678999999999999999999999999999999999999987655433 334567899


Q ss_pred             ccccCCeEEEEe--eCCC---CCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          358 GNPLPGVQVKIA--EDES---GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       358 G~p~~~~~~~iv--d~~~---~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      |.|+|+++++|+  |++|   ++++.| .|||+++||+++.||+++++.++.. .+|||
T Consensus       389 G~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~  447 (632)
T PRK07529        389 GLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWL  447 (632)
T ss_pred             ccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCce
Confidence            999999998885  6667   667777 8999999999999999876544333 47887

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.5e-50  Score=406.92  Aligned_cols=373  Identities=19%  Similarity=0.265  Sum_probs=294.5

Q ss_pred             HHHHHHhcccCCCeeEEEeCC------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      .+.|.++++.+||++|+++.+      +++||+||++++.++|+.|++                 +|+++||+|+++++|
T Consensus        60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  122 (625)
T TIGR02188        60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-----------------LGVKKGDRVAIYMPM  122 (625)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            455667888899999998743      489999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH---------HHHHHHhhccC--Cc-eeccCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---------EVLQNVASKSG--AK-FSLIPP  145 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~-~~~~~~  145 (409)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++...         ..+........  .. .+....
T Consensus       123 ~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (625)
T TIGR02188       123 IPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRR  202 (625)
T ss_pred             CHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcC
Confidence            9999999999999999999999999999999999999999999987532         23333322221  11 111111


Q ss_pred             CCCCCCC--------ccccc-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCeEE
Q 015313          146 VPNVSSE--------TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFL  215 (409)
Q Consensus       146 ~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~l  215 (409)
                      .......        ..... ...........++++++|+|||||||.||+|+++|++++.... .....+++.++|+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~  282 (625)
T TIGR02188       203 TGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFW  282 (625)
T ss_pred             CCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEE
Confidence            1000000        00000 0001112234568999999999999999999999999875443 334456788899999


Q ss_pred             EecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhh
Q 015313          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (409)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~  291 (409)
                      +..|++|..++...++.+|..|+++++.+.    +++..+++.          ++++++|++.++|++++.+.+....  
T Consensus       283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--  350 (625)
T TIGR02188       283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI----------IEKHKVTIFYTAPTAIRALMRLGDE--  350 (625)
T ss_pred             ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc--
Confidence            999999999886678899999999999864    368888888          7889999999999999999875221  


Q ss_pred             HHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccCC--CCCCccccccccCCeEE
Q 015313          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQV  366 (409)
Q Consensus       292 ~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~~--~~~~~~~~G~p~~~~~~  366 (409)
                          .....++++||.+++||+++++++.+++.+.++   +++++.||+||+++.+.....  ...+++++|+|++++++
T Consensus       351 ----~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  426 (625)
T TIGR02188       351 ----WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEP  426 (625)
T ss_pred             ----ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceE
Confidence                122346789999999999999999999999885   789999999999876543221  23567889999999999


Q ss_pred             EEeeCCCCCCC-Cc-cceEEEeC--cchhhhhcCCCcccchh----hcccC
Q 015313          367 KIAEDESGSDA-AG-VGEICVKS--PSLFKEYWKLPKESRTL----SSCLY  409 (409)
Q Consensus       367 ~ivd~~~~~~~-~~-~Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~  409 (409)
                      +|+|++|++++ .| .|||+++|  |+++.|||++|+.+.+.    .+|||
T Consensus       427 ~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~  477 (625)
T TIGR02188       427 AVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYY  477 (625)
T ss_pred             EEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEE
Confidence            99999999888 66 89999999  68999999999988776    37886

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=8.7e-50  Score=392.07  Aligned_cols=370  Identities=33%  Similarity=0.534  Sum_probs=307.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEe-CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ++.+.+..++ .+|+++|+.+ +++.+||.||.++++++|..|++.                 |+++||+|+++++|+++
T Consensus         4 ~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~gd~v~i~~~~~~e   65 (504)
T PRK07514          4 NLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVAL-----------------GVKPGDRVAVQVEKSPE   65 (504)
T ss_pred             cHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            5788899999 8999999988 678999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCCCCCCccccccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQS  159 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (409)
                      ++++++||+++|++++|+++..+.+++..+++.++++++++++.....+.......... ...+................
T Consensus        66 ~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (504)
T PRK07514         66 ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAP  145 (504)
T ss_pred             HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcC
Confidence            99999999999999999999999999999999999999999988776665554433322 11111111000000000000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      ..........+++++++|||||||.||+|.++|+++...+......++..++|++++.+|++|..++...++.++..|++
T Consensus       146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  225 (504)
T PRK07514        146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS  225 (504)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence            11112234578999999999999999999999999999988888888889999999999999999987778899999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+..++..+++.          +  .++|.+.++|.++..+++...        .....++++|.+++||+++++++
T Consensus       226 ~~~~~~~~~~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~~~~~~  285 (504)
T PRK07514        226 MIFLPKFDPDAVLAL----------M--PRATVMMGVPTFYTRLLQEPR--------LTREAAAHMRLFISGSAPLLAET  285 (504)
T ss_pred             EEECCCCCHHHHHHH----------H--HhheeeecHHHHHHHHHcCCC--------CCcccccceeeEEecCCCCCHHH
Confidence            999999899888887          4  379999999999999886521        22345778999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      .+.+.+.++.++++.||+||++..............++|.|+++++++|+| +++++++.| .|||+++|++++.|||++
T Consensus       286 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~  365 (504)
T PRK07514        286 HREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRM  365 (504)
T ss_pred             HHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCC
Confidence            999999999999999999999876654443444567899999999999999 778888887 899999999999999999


Q ss_pred             Ccccchhh--cccC
Q 015313          398 PKESRTLS--SCLY  409 (409)
Q Consensus       398 ~~~t~~~~--~g~~  409 (409)
                      |+.+++.+  +|||
T Consensus       366 ~~~~~~~~~~~~~~  379 (504)
T PRK07514        366 PEKTAEEFRADGFF  379 (504)
T ss_pred             chhhhhhcccCCCe
Confidence            99999884  7887

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-50  Score=399.87  Aligned_cols=370  Identities=23%  Similarity=0.306  Sum_probs=300.4

Q ss_pred             HHHHHhcc-cCCCeeEEEeCC----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            5 KAAYKKGS-MARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         5 ~~l~~~~~-~~~~~~a~~~~~----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      +.+.+++. .+|+++|+.+.+    +.+||+||.+++.++|..|.+                 +|+++||+|+++++|++
T Consensus        47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~gv~~gd~V~i~~~n~~  109 (570)
T PRK04319         47 EAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDRVFIFMPRIP  109 (570)
T ss_pred             HHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCH
Confidence            56777776 479999998743    689999999999999999998                 49999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-Cc-eeccCCCCCCCC-Ccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AK-FSLIPPVPNVSS-ETTVF  156 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~  156 (409)
                      +++++++||+++|++++|+++.++.+++.++++.++++++|+++.........  ... .. .+.+........ .....
T Consensus       110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  187 (570)
T PRK04319        110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD--DLPSLKHVLLVGEDVEEGPGTLDFN  187 (570)
T ss_pred             HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh--cCCCceEEEEECCCcCCCcCccCHH
Confidence            99999999999999999999999999999999999999999998765433211  111 11 111111110000 00000


Q ss_pred             c----cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHH
Q 015313          157 D----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (409)
Q Consensus       157 ~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~  232 (409)
                      +    ...........++++++++|||||||.||+|.++|++++..+......+++.++|++++..|+.|..++...++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~  267 (570)
T PRK04319        188 ALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFA  267 (570)
T ss_pred             HHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHH
Confidence            0    000111223456889999999999999999999999999888887788888899999999999999988778999


Q ss_pred             HHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          233 PLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       233 ~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      ++..|+++++.. .+++..+++.          ++++++|+++++|.+++.+.+....      .....++++||.+++|
T Consensus       268 ~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~~~~g  331 (570)
T PRK04319        268 PWLNGATNVIDGGRFSPERWYRI----------LEDYKVTVWYTAPTAIRMLMGAGDD------LVKKYDLSSLRHILSV  331 (570)
T ss_pred             HHhcCceEEEECCCCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcCCc------ccccCCcccceEEEEc
Confidence            999999999875 5789999888          7889999999999999999764211      1123457899999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccccccccccc-ccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeC--
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS--  387 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~-~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g--  387 (409)
                      |+++++++.+++.+.++.++++.||+||+++... ........++++|.|+|+++++|+|+++++++.| .|||+++|  
T Consensus       332 G~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~  411 (570)
T PRK04319        332 GEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGW  411 (570)
T ss_pred             ccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCC
Confidence            9999999999999999999999999999986543 3333345678999999999999999999888887 89999997  


Q ss_pred             cchhhhhcCCCcccchh-hcccC
Q 015313          388 PSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       388 ~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      |+++.||||+|+.|++. .+|||
T Consensus       412 ~~~~~GY~~~~~~~~~~~~~gw~  434 (570)
T PRK04319        412 PSMMRGIWNNPEKYESYFAGDWY  434 (570)
T ss_pred             ChHHhHhcCCHHHhhhhhcCCce
Confidence            89999999999999988 58897

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.9e-50  Score=395.41  Aligned_cols=374  Identities=21%  Similarity=0.316  Sum_probs=304.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +|+.+.+.++++++|+++|+++.  ++++||.||.++++++|+.|.+.                 |+++||+|+++++|+
T Consensus        23 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~-----------------g~~~gd~V~i~~~~~   85 (537)
T PLN02246         23 LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKL-----------------GIRQGDVVMLLLPNC   85 (537)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCC
Confidence            57889999999999999999975  47899999999999999999984                 899999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCC-CCCCccccc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETTVFD  157 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  157 (409)
                      ++++++++||+++|++++|+++..+.+++..+++.++++++|++......+...........+.+..... .........
T Consensus        86 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (537)
T PLN02246         86 PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQ  165 (537)
T ss_pred             hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhc
Confidence            9999999999999999999999999999999999999999999988777665544322222222221110 000000000


Q ss_pred             -cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 015313          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (409)
Q Consensus       158 -~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~  232 (409)
                       ...........++++++++|||||||.||+|.++|++++..+.....    .+.+..+|++++.+|++|..++...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~  245 (537)
T PLN02246        166 ADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLC  245 (537)
T ss_pred             CCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHH
Confidence             00001122345789999999999999999999999999887765433    4678899999999999999998766788


Q ss_pred             HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+...        .....++++|.+++||
T Consensus       246 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~gg  307 (537)
T PLN02246        246 GLRVGAAILIMPKFEIGALLEL----------IQRHKVTIAPFVPPIVLAIAKSPV--------VEKYDLSSIRMVLSGA  307 (537)
T ss_pred             HHhcCCEEEEeCCCCHHHHHHH----------HHHhCceEEEcchHHHHHHhcCcc--------ccccCccceeEEEEec
Confidence            8999999999999999999888          788999999999999998876422        1223567899999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccccC-----CCCCCccccccccCCeEEEEeeC-CCCCCCCc-cceEE
Q 015313          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEIC  384 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-----~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~~~-~Gel~  384 (409)
                      +++++++.+.+.+.+ +..+++.||+||++.++....     ......+++|+|+++++++|+|+ ++++++.| .|||+
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~  387 (537)
T PLN02246        308 APLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEIC  387 (537)
T ss_pred             CcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEE
Confidence            999999999999998 678999999999986544321     11235678999999999999995 56778877 89999


Q ss_pred             EeCcchhhhhcCCCcccchhh--cccC
Q 015313          385 VKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       385 v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      ++|++++.|||++|+.|++.+  +|||
T Consensus       388 v~g~~~~~GY~~~~~~~~~~~~~~~~~  414 (537)
T PLN02246        388 IRGPQIMKGYLNDPEATANTIDKDGWL  414 (537)
T ss_pred             EECCchhccccCCchhhhhcccCCCCe
Confidence            999999999999999998884  6887

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1e-49  Score=395.69  Aligned_cols=366  Identities=22%  Similarity=0.304  Sum_probs=292.6

Q ss_pred             HHHHHhcccCCCeeEEEeCC--ccccHHHHHHHHHHHHHHHhh-CCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            5 KAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCS-NDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         5 ~~l~~~~~~~~~~~a~~~~~--~~~Ty~~l~~~~~~~a~~L~~-~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      +.+... +.+|+++|+++..  .++||+||.++++++|+.|.+ .                 |+++||+|+++++|++++
T Consensus        44 ~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~-----------------G~~~gd~V~i~~~n~~~~  105 (560)
T PLN02574         44 SFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVM-----------------GVRQGDVVLLLLPNSVYF  105 (560)
T ss_pred             HHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcchH
Confidence            344444 5689999999854  379999999999999999998 5                 889999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCC----ccc--
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE----TTV--  155 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--  155 (409)
                      +++++||+++|++++|+++..+.+++.++++.+++++++++.+..+.+...    ....+.+.........    ...  
T Consensus       106 ~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PLN02574        106 PVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL----GVPVIGVPENYDFDSKRIEFPKFYE  181 (560)
T ss_pred             HHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc----CCcEEecCcccccccCccCcccHHH
Confidence            999999999999999999999999999999999999999998776655432    1111111110000000    000  


Q ss_pred             -c-ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh----cc-cCCCCeEEEecCchhHHHHHH
Q 015313          156 -F-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA----WE-YTSADQFLHCLPLHHVHGLFN  228 (409)
Q Consensus       156 -~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~----~~-~~~~d~~l~~~pl~~~~g~~~  228 (409)
                       . ............++++++++|||||||.||+|.++|+++...+..+...    .. ...+++++..+|++|..|+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~  261 (560)
T PLN02574        182 LIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL  261 (560)
T ss_pred             HhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence             0 0000111223356889999999999999999999999999877655431    22 235688999999999999877


Q ss_pred             HHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEE
Q 015313          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (409)
Q Consensus       229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v  308 (409)
                      .++.++..|+++++.+.+++..+++.          +++|++|++.++|+++..+.+...       .....+++++|.+
T Consensus       262 ~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~-------~~~~~~~~~lr~~  324 (560)
T PLN02574        262 FVVGLLSLGSTIVVMRRFDASDMVKV----------IDRFKVTHFPVVPPILMALTKKAK-------GVCGEVLKSLKQV  324 (560)
T ss_pred             HHHHHHhcCCEEEEecCCCHHHHHHH----------HHHcCCeEEecCCHHHHHHHhCcc-------ccccCccccceEE
Confidence            77788889999999999999999988          788999999999999999987521       1123467899999


Q ss_pred             EeeCCCCCHHHHHHHHHHh-CCcccccccccccccccccc--CCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceE
Q 015313          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEI  383 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~--~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel  383 (409)
                      ++||+++++++.+++.+.+ ++++++.||+||++++....  .......+++|+|.++++++|+| +++++++.| .|||
T Consensus       325 ~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei  404 (560)
T PLN02574        325 SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGEL  404 (560)
T ss_pred             EEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEE
Confidence            9999999999999999988 68999999999998655422  12234567899999999999999 677888887 8999


Q ss_pred             EEeCcchhhhhcCCCcccchhh--cccC
Q 015313          384 CVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       384 ~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +|+|++++.|||++|+.|++.+  ||||
T Consensus       405 ~v~g~~~~~GY~~~~~~t~~~~~~~g~~  432 (560)
T PLN02574        405 WIQGPGVMKGYLNNPKATQSTIDKDGWL  432 (560)
T ss_pred             EEECcchhhhhcCChhHhhhhccCCCCc
Confidence            9999999999999999998874  7997

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-50  Score=403.85  Aligned_cols=373  Identities=20%  Similarity=0.280  Sum_probs=293.2

Q ss_pred             HHHHHHhcccCCCeeEEEeCC------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      .+.|.++++.+||++|+++.+      +.+||+||++++.++|+.|++.                 |+++||+|+++++|
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~-----------------Gv~~gd~V~i~~~n  132 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSL-----------------GVKKGDRVAIYMPM  132 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCC
Confidence            355777888899999999743      4799999999999999999994                 99999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH---------HHHHHHhhccC-Ccee-ccCCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---------EVLQNVASKSG-AKFS-LIPPV  146 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~~~-~~~~~  146 (409)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++|+++...         +.+........ .... .....
T Consensus       133 ~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (637)
T PRK00174        133 IPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRT  212 (637)
T ss_pred             CHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCC
Confidence            9999999999999999999999999999999999999999999976532         22222222111 1111 11110


Q ss_pred             CCCCCC--------cccc-ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHH-HHhhcccCCCCeEEE
Q 015313          147 PNVSSE--------TTVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLH  216 (409)
Q Consensus       147 ~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~l~  216 (409)
                      ......        .... ............++++++|+|||||||.||+|.++|++++..... ....+++.++|++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~  292 (637)
T PRK00174        213 GGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWC  292 (637)
T ss_pred             CCCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEE
Confidence            000000        0000 000001122345689999999999999999999999998755433 344567888999999


Q ss_pred             ecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhH
Q 015313          217 CLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT  292 (409)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~  292 (409)
                      ..|++|..++...++.+|..|+++++.+.    +++..+++.          ++++++|++.++|++++.+++....   
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~---  359 (637)
T PRK00174        293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV----------IDKHKVTIFYTAPTAIRALMKEGDE---  359 (637)
T ss_pred             cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH----------HHhcCCeEEeecHHHHHHHHhcCCc---
Confidence            99999999987778999999999999764    367888888          7889999999999999998875221   


Q ss_pred             HHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccCC--CCCCccccccccCCeEEE
Q 015313          293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVK  367 (409)
Q Consensus       293 ~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~~--~~~~~~~~G~p~~~~~~~  367 (409)
                         .....++++||.+++||+++++++.+++.+.++   +++++.||+||+++.+.....  ...+.+++|+|+++++++
T Consensus       360 ---~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~  436 (637)
T PRK00174        360 ---HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPA  436 (637)
T ss_pred             ---ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEE
Confidence               112346789999999999999999999998885   789999999999876543221  234567899999999999


Q ss_pred             EeeCCCCCCCCc-cceEEEeC--cchhhhhcCCCcccchhh----cccC
Q 015313          368 IAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESRTLS----SCLY  409 (409)
Q Consensus       368 ivd~~~~~~~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~~----~g~~  409 (409)
                      |+|++|++++.| .|||+++|  |++++|||++|+.+.+.+    +|||
T Consensus       437 i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~  485 (637)
T PRK00174        437 VVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMY  485 (637)
T ss_pred             EECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEE
Confidence            999999999887 89999999  699999999999888763    7886

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=5.3e-50  Score=402.45  Aligned_cols=368  Identities=18%  Similarity=0.207  Sum_probs=288.3

Q ss_pred             HHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      .+.|.+++..+|+++|+++      ..+++||+||.++++++|++|++                 +|+++||+|+++++|
T Consensus        55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~n  117 (628)
T TIGR02316        55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-----------------LGVGRGDRVLIYMPM  117 (628)
T ss_pred             HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence            4567788888999999987      23689999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhcc---CCceeccCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (409)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.......   ....+.+..
T Consensus       118 ~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  197 (628)
T TIGR02316       118 IAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDR  197 (628)
T ss_pred             CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999997642         22222222211   111222211


Q ss_pred             CCCC-C--C--Cccccccc-----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHH-HHHHHhhcccCCCCeE
Q 015313          146 VPNV-S--S--ETTVFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQF  214 (409)
Q Consensus       146 ~~~~-~--~--~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~  214 (409)
                      .... .  .  .....+..     .........++++++|+|||||||.||||.++|.+++.. .......++++++|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~  277 (628)
T TIGR02316       198 GLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVM  277 (628)
T ss_pred             CCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEE
Confidence            1000 0  0  00000000     000111235689999999999999999999999998643 4445556788899999


Q ss_pred             EEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      ++..|++|..++...++.+|+.|+++++.++    +++..+++.          ++++++|+++++|++++.+.+.... 
T Consensus       278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-  346 (628)
T TIGR02316       278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI----------VERYGVRTMFSAPTAIRVLKKQDAA-  346 (628)
T ss_pred             EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc-
Confidence            9999999999987778999999999999874    367778887          7889999999999999988764211 


Q ss_pred             hHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC----CCCCCccccccccCCeEE
Q 015313          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQV  366 (409)
Q Consensus       291 ~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~----~~~~~~~~~G~p~~~~~~  366 (409)
                           .....++++||.+++||+++++++.+++.+.++.++++.||+||++..+....    ......+++|+|+|++++
T Consensus       347 -----~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v  421 (628)
T TIGR02316       347 -----WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHL  421 (628)
T ss_pred             -----ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceE
Confidence                 12345688999999999999999999999999999999999999985433211    113456789999999999


Q ss_pred             EEeeC-CCCCCCCc-cceEEEeCc---chhhhhcCCCcccchh
Q 015313          367 KIAED-ESGSDAAG-VGEICVKSP---SLFKEYWKLPKESRTL  404 (409)
Q Consensus       367 ~ivd~-~~~~~~~~-~Gel~v~g~---~~~~gY~~~~~~t~~~  404 (409)
                      +|+|+ +|++++.| .|||+++||   +.+.|||++++.+.+.
T Consensus       422 ~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~  464 (628)
T TIGR02316       422 RVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT  464 (628)
T ss_pred             EEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHh
Confidence            99998 68888877 899999998   5789999999988765

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=6.6e-50  Score=397.00  Aligned_cols=366  Identities=22%  Similarity=0.311  Sum_probs=285.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCc----------cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQK----------SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~----------~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~   70 (409)
                      +|+.+.|.+.++++||++|+++.+.          ++||+||.++++++|++|.+.                 |+++||+
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-----------------g~~~gd~   68 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAA-----------------GIGRGMR   68 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCE
Confidence            4788899999999999999998654          899999999999999999994                 8999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh--HHHHHHHHhhccCCceeccCCC--
Q 015313           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPV--  146 (409)
Q Consensus        71 V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~--  146 (409)
                      |+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++  ....+...........+.+...  
T Consensus        69 V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  148 (552)
T PRK09274         69 AVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLL  148 (552)
T ss_pred             EEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccc
Confidence            999999999999999999999999999999999999999999999999999752  2222211110000001111100  


Q ss_pred             CCCCCCcccc-c-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHH
Q 015313          147 PNVSSETTVF-D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (409)
Q Consensus       147 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (409)
                      .......... . ...........++++++++|||||||.||+|.++|+++...+......+++.++|+.++..|++|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  228 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF  228 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh
Confidence            0000000000 0 0001112234568999999999999999999999999999988888888899999999999998754


Q ss_pred             HHHHHHHHHHhcCCEEEEcc-------CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHH
Q 015313          225 GLFNALLAPLYAGATVEFMP-------KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (409)
Q Consensus       225 g~~~~~~~~l~~G~~i~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~  297 (409)
                      +        +..|+++++.+       .+++..+++.          ++++++|+++++|++++.+.+...        .
T Consensus       229 ~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--------~  282 (552)
T PRK09274        229 G--------PALGMTSVIPDMDPTRPATVDPAKLFAA----------IERYGVTNLFGSPALLERLGRYGE--------A  282 (552)
T ss_pred             h--------hhhCCeEEecCcccccccccCHHHHHHH----------HHHcCCeEEeccHHHHHHHHHHhh--------h
Confidence            3        34588887764       3567888888          788999999999999999987532        1


Q ss_pred             hhhhhccceEEEeeCCCCCHHHHHHHHHHh--CCccccccccccccccccccCCC----------CCCccccccccCCeE
Q 015313          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAISNPLRG----------ARKAGTVGNPLPGVQ  365 (409)
Q Consensus       298 ~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~tE~g~~~~~~~~~----------~~~~~~~G~p~~~~~  365 (409)
                      ...+++++|.+++||+++++++.+++.+.+  |+++++.||+||+++++......          .....++|+|+|+++
T Consensus       283 ~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~  362 (552)
T PRK09274        283 NGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVE  362 (552)
T ss_pred             cCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCce
Confidence            234678999999999999999999999999  47999999999998655422111          112347899999999


Q ss_pred             EEEeeC---------CCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh----cc--cC
Q 015313          366 VKIAED---------ESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS----SC--LY  409 (409)
Q Consensus       366 ~~ivd~---------~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~----~g--~~  409 (409)
                      ++|+|+         ++++++.| .|||+++||+++.||||+|++|+..+    +|  ||
T Consensus       363 ~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~  422 (552)
T PRK09274        363 VRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWH  422 (552)
T ss_pred             EEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEE
Confidence            999995         45667777 89999999999999999999998764    56  87

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-50  Score=406.83  Aligned_cols=357  Identities=20%  Similarity=0.290  Sum_probs=291.8

Q ss_pred             hHHHHHHHhccc--CCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSM--ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~--~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      |+.+.|.++++.  +||++|++.. +.+||+||+++++++|+.|.+.                 |+++|++|+|+++|++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~-----------------g~~~g~~V~i~~~~~~   66 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNR-----------------GLSSGDRVLLCLPDSP   66 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCH
Confidence            577888888876  7999999875 4899999999999999999995                 8999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (409)
                      +++++++||+++|++++|+++.++.+++.++++.++++++|++.+....+...      .....   .....  .... .
T Consensus        67 ~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~---~~~~~--~~~~-~  134 (705)
T PRK06060         67 DLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS------RVAEA---AELMS--EAAR-V  134 (705)
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc------ccchh---hhhhh--hccc-c
Confidence            99999999999999999999999999999999999999999987654433210      00000   00000  0000 0


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH-hhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                      .........++++++++|||||||.||+|.++|+++...+.... ..+.+...|++++..|++|..++...++.++..|+
T Consensus       135 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~  214 (705)
T PRK06060        135 APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGG  214 (705)
T ss_pred             CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCC
Confidence            00011123568899999999999999999999999988776654 45778889999999999999887666888999999


Q ss_pred             EEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       239 ~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      ++++.+ .+++..++..          ++++++|+++++|+++..+++...          ...++++|.+++||+++++
T Consensus       215 ~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~----------~~~~~slr~i~~gGe~l~~  274 (705)
T PRK06060        215 SAVINSAPVTPEAAAIL----------SARFGPSVLYGVPNFFARVIDSCS----------PDSFRSLRCVVSAGEALEL  274 (705)
T ss_pred             EEEEeCCCCCHHHHHHH----------HHhcCCeEEeeHHHHHHHHHHhcc----------cccccceeEEEEecCcCCH
Confidence            999987 4667666666          778999999999999998876421          2346789999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhc
Q 015313          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (409)
Q Consensus       318 ~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~  395 (409)
                      ++.+++.+.+ ++++++.||+||++.............+++|+|+++++++|+|+++++++.| .||||++|++++.|||
T Consensus       275 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~  354 (705)
T PRK06060        275 GLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYW  354 (705)
T ss_pred             HHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhh
Confidence            9999999998 5899999999999865543332334567899999999999999999998888 8999999999999999


Q ss_pred             CCCcccchhhcccC
Q 015313          396 KLPKESRTLSSCLY  409 (409)
Q Consensus       396 ~~~~~t~~~~~g~~  409 (409)
                      |+|+.+.. .+|||
T Consensus       355 ~~~~~~~~-~~~~~  367 (705)
T PRK06060        355 NRPDSPVA-NEGWL  367 (705)
T ss_pred             CCCccccc-CCCcE
Confidence            99998753 57887

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-49  Score=389.19  Aligned_cols=368  Identities=19%  Similarity=0.309  Sum_probs=304.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|.++++.+|+++|++++++++||.||.+++.++|..|.+.                 |+++|++|+++++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~v~i~~~~~~~   64 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHAR-----------------GIGQGDVVALLMKNSAA   64 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            6899999999999999999999999999999999999999999994                 88999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCcccccc-c
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-S  159 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  159 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++++........     .....+..... ......... .
T Consensus        65 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~  138 (497)
T PRK06145         65 FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE-----TPKIVIDAAAQ-ADSRRLAQGGL  138 (497)
T ss_pred             HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc-----cceEEecCccc-chhHHHhccCC
Confidence            9999999999999999999999999999999999999999997765432110     11111111000 000000000 0


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      .........++++++++|||||||.||+|.++|+++..........++...+++++...|++|..++....+.++..|++
T Consensus       139 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  218 (497)
T PRK06145        139 EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGT  218 (497)
T ss_pred             CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCE
Confidence            00112234678999999999999999999999999987666666677888999999999999999987767788999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.+++..+++.          ++++++|.+.++|+++..++.....        ...+++++|.+++||+++++++
T Consensus       219 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~ll~~~~~--------~~~~~~~l~~~~~gG~~~~~~~  280 (497)
T PRK06145        219 LRIHREFDPEAVLAA----------IERHRLTCAWMAPVMLSRVLTVPDR--------DRFDLDSLAWCIGGGEKTPESR  280 (497)
T ss_pred             EEECCcCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHcCCCc--------cccccccceEEEecCCCCCHHH
Confidence            999999999999988          7789999999999999999875221        2235678999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccccCC--CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhc
Q 015313          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (409)
Q Consensus       320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~--~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~  395 (409)
                      .+.+.+.| +.++++.||+||+++..+....  .....+++|+|+++++++++|++++.++.+ .|||+++|++++.|||
T Consensus       281 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~  360 (497)
T PRK06145        281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYW  360 (497)
T ss_pred             HHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhc
Confidence            99999988 6789999999999875443221  223567899999999999999999888877 8999999999999999


Q ss_pred             CCCcccchh-hcccC
Q 015313          396 KLPKESRTL-SSCLY  409 (409)
Q Consensus       396 ~~~~~t~~~-~~g~~  409 (409)
                      ++++.|++. .+|||
T Consensus       361 ~~~~~~~~~~~~~~~  375 (497)
T PRK06145        361 KDPEKTAEAFYGDWF  375 (497)
T ss_pred             CChHHHHHHHhCCCe
Confidence            999999888 68887

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-49  Score=395.39  Aligned_cols=374  Identities=24%  Similarity=0.344  Sum_probs=303.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.++++++++|+++|++++++.+||.||+++++++|+.|.+.                 |+++||+|+++++|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~-----------------gi~~gd~V~l~~~n~~~   94 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRAL-----------------GVRPGDRVAIVLPNCPQ   94 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCHH
Confidence            4688899999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC-CC------------
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VP------------  147 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------  147 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++....+..+........++... ..            
T Consensus        95 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  174 (573)
T PRK05605         95 HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRL  174 (573)
T ss_pred             HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccc
Confidence            99999999999999999999999999999999999999999887766555443322211111000 00            


Q ss_pred             ---CCC-----------CCcccc---cc-chh----hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh
Q 015313          148 ---NVS-----------SETTVF---DQ-SQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA  205 (409)
Q Consensus       148 ---~~~-----------~~~~~~---~~-~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~  205 (409)
                         ...           ......   .. ...    ........+++++++|||||||.||+|.++|+++...+......
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~  254 (573)
T PRK05605        175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAW  254 (573)
T ss_pred             ccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence               000           000000   00 000    11122456899999999999999999999999998777654433


Q ss_pred             cc--cCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHH
Q 015313          206 WE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL  283 (409)
Q Consensus       206 ~~--~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l  283 (409)
                      ..  ...++++++.+|++|..|+...+..++..|+++++.+.+++..+++.          ++++++|++.++|.+++.+
T Consensus       255 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l  324 (573)
T PRK05605        255 VPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA----------MKKHPPTWLPGVPPLYEKI  324 (573)
T ss_pred             ccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHhCCEEEEchHHHHHHH
Confidence            22  23478999999999999987778888999999999998899999888          7789999999999999999


Q ss_pred             HHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccC
Q 015313          284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLP  362 (409)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~  362 (409)
                      .+....        ....++++|.+++||+++++++.+++.+.++.++++.||+||+++++.... ......+++|.|++
T Consensus       325 ~~~~~~--------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~  396 (573)
T PRK05605        325 AEAAEE--------RGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFP  396 (573)
T ss_pred             HhCccc--------cCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCC
Confidence            875322        223567899999999999999999999988999999999999987655432 22345678999999


Q ss_pred             CeEEEEeeCCC--CCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          363 GVQVKIAEDES--GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       363 ~~~~~ivd~~~--~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +++++|+|+++  ++++.| .|||+++|+.++.||+++|+.|++. .+|||
T Consensus       397 ~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  447 (573)
T PRK05605        397 DTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWF  447 (573)
T ss_pred             CCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCc
Confidence            99999999775  677777 8999999999999999999999988 67787

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.1e-49  Score=391.07  Aligned_cols=374  Identities=19%  Similarity=0.245  Sum_probs=303.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.++++.+|+++|++++++.+||+||.++++++|..|.+.                 |+++|++|+++++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~~   85 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKL-----------------GIGQGDTAVVQLPNIAE   85 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence            3678899999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-CceeccCCCCC-CCCCc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPN-VSSET  153 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~-~~~~~  153 (409)
                      ++++++||+++|++++++++..+.+++.++++.+++++++++....     ........... ........... .....
T Consensus        86 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (527)
T TIGR02275        86 FYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELF  165 (527)
T ss_pred             HHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhh
Confidence            9999999999999999999999999999999999999999986532     11222211111 11111111000 00000


Q ss_pred             c-ccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHH
Q 015313          154 T-VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (409)
Q Consensus       154 ~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~  231 (409)
                      . ..............++++++++|||||||.||+|.++|+++...+......+.++.+|+++..+|++|.+++.. .++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       166 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             HHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence            0 00000011122346789999999999999999999999999998888888888899999999999999998864 478


Q ss_pred             HHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+..+.        ...+++++|.+++|
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~lr~~~~g  307 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPL----------IERHKVTVTALVPPAVALWMQAASK--------SRYDLSSLKLLQVG  307 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHH----------HHHhCCeEEEecHHHHHHHHhCccc--------cCCCccceEEEEEc
Confidence            88999999999988889888887          7889999999999999988875321        23457789999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccccccccccccc-CCCCCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~~~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      |++++.++.+++.+.++.++++.||+||++...... .......+++|+|+ ++.+++|+|++|++++.| .|||+++|+
T Consensus       308 G~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~  387 (527)
T TIGR02275       308 GAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGP  387 (527)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCC
Confidence            999999999999999999999999999966433321 12233456899999 588999999999988887 899999999


Q ss_pred             chhhhhcCCCcccchhh--cccC
Q 015313          389 SLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++.|||++|+.|++.+  ||||
T Consensus       388 ~~~~gY~~~~~~~~~~~~~dg~~  410 (527)
T TIGR02275       388 YTFRGYYKAPEHNAAAFDAEGFY  410 (527)
T ss_pred             ccchhhcCChhHhHhhcCcCCCE
Confidence            99999999999998884  7887

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-49  Score=389.45  Aligned_cols=373  Identities=24%  Similarity=0.308  Sum_probs=311.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.+.++.+||++|+++.++.+||+||++++.++|..|.+.                 |+++|++|+++++|++++
T Consensus        12 ~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~~~~V~l~~~~~~~~   74 (523)
T PRK08316         12 TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDL-----------------GLKKGDRVAALGHNSDAY   74 (523)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHH
Confidence            578899999999999999999999999999999999999999995                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC----CCcccc-
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS----SETTVF-  156 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-  156 (409)
                      +++++||+++|++++|+++..+.+++..+++.+++++++++++....+.+...........+.......    ...... 
T Consensus        75 ~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (523)
T PRK08316         75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFAD  154 (523)
T ss_pred             HHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHH
Confidence            999999999999999999999999999999999999999998877766554333221111111100000    000000 


Q ss_pred             --c-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          157 --D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       157 --~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                        . ............+++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|..++...+..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~  234 (523)
T PRK08316        155 WAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPY  234 (523)
T ss_pred             HHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHH
Confidence              0 0000112234568899999999999999999999999999888888888899999999999999999986667778


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|+++++.+..++..+++.          ++++++|++.++|.++..+++...        ....+++++|.+++||+
T Consensus       235 ~~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gg~  296 (523)
T PRK08316        235 LYVGATNVILDAPDPELILRT----------IEAERITSFFAPPTVWISLLRHPD--------FDTRDLSSLRKGYYGAS  296 (523)
T ss_pred             HhcCceEEEecCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHcCcc--------cccCCcccceEEEEcCC
Confidence            899999999988899999888          788999999999999999887522        23346789999999999


Q ss_pred             CCCHHHHHHHHHHh-CCccccccccccccccccccC--CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcc
Q 015313          314 ALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPS  389 (409)
Q Consensus       314 ~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~--~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~  389 (409)
                      +++.++.+.+++.+ ++++++.||+||++.+.....  ......+++|+|+++++++|+|+++++++.| .|||+++|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~  376 (523)
T PRK08316        297 IMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQ  376 (523)
T ss_pred             cCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCc
Confidence            99999999999988 789999999999987654322  2234567899999999999999999998888 8999999999


Q ss_pred             hhhhhcCCCcccchh-hcccC
Q 015313          390 LFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       390 ~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++.||+++++.+++. .+|||
T Consensus       377 ~~~~y~~~~~~~~~~~~~~~~  397 (523)
T PRK08316        377 LMLGYWDDPEKTAEAFRGGWF  397 (523)
T ss_pred             hhhhhcCCHHHHHHHhhCCCe
Confidence            999999999999988 68887

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=5.9e-49  Score=388.87  Aligned_cols=373  Identities=23%  Similarity=0.304  Sum_probs=303.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      ++.+.+.++++.+|+++|++.      ....+||+||++++.++|..|.+.                 |+++|++|++++
T Consensus        23 ~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~   85 (538)
T TIGR03208        23 TINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARL-----------------GVGRGDVVSFQL   85 (538)
T ss_pred             cHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEC
Confidence            678899999999999999986      246899999999999999999984                 899999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccCC-ceeccCCCCCC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA-KFSLIPPVPNV  149 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~  149 (409)
                      +|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.+.     ............ ...........
T Consensus        86 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (538)
T TIGR03208        86 PNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD  165 (538)
T ss_pred             CCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC
Confidence            999999999999999999999999999999999999999999999987542     112222111111 11111111000


Q ss_pred             CCCccc------cccch---hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCc
Q 015313          150 SSETTV------FDQSQ---AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPL  220 (409)
Q Consensus       150 ~~~~~~------~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl  220 (409)
                      ......      .....   ........++++++++|||||||.||+|.++|+++...+......++++.+|++++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  245 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM  245 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence            000000      00000   001123456899999999999999999999999999988888888888899999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhh
Q 015313          221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (409)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  300 (409)
                      +|..+++..++.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+..+.        ...
T Consensus       246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~~--------~~~  307 (538)
T TIGR03208       246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL----------IRETGVTFTMASTPFLTDLCRAVKE--------SGA  307 (538)
T ss_pred             hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH----------HHHhCCeEEecCHHHHHHHHhchhc--------cCC
Confidence            9999988888999999999999998899999998          7889999999999999988765321        123


Q ss_pred             hhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC--CCCccccccccCCeEEEEeeCCCCCCCC
Q 015313          301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDAA  378 (409)
Q Consensus       301 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~--~~~~~~~G~p~~~~~~~ivd~~~~~~~~  378 (409)
                      +++++|.+++||+++++++.+++.+.+++++++.||+||++++.......  .....++|+|+++++++|+|+++++++.
T Consensus       308 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~  387 (538)
T TIGR03208       308 PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQ  387 (538)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcC
Confidence            56789999999999999999999998999999999999998765543321  1224578999999999999999988888


Q ss_pred             c-cceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          379 G-VGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       379 ~-~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      | .|||+++|++++.|||++|+.|+...||||
T Consensus       388 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~  419 (538)
T TIGR03208       388 GETGRLLVRGCSNFGGYLKRPHLNSTDAEGWF  419 (538)
T ss_pred             CCCcEEEEecCcccccccCCcccccccCCCce
Confidence            7 799999999999999999999887688997

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-49  Score=388.91  Aligned_cols=359  Identities=22%  Similarity=0.301  Sum_probs=299.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      |++.+.|+++++.+||++|+.+.++++||.||.++++++|++|.+.                 | .+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------~-~~~~~v~i~~~~~~~   62 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEK-----------------E-SKNKTIAILLENRIE   62 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHh-----------------C-CCCCEEEEEcCCCHH
Confidence            7899999999999999999999999999999999999999999984                 5 479999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++......+...    ....+.+.......     .....
T Consensus        63 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~  133 (487)
T PRK07638         63 FLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE----EGRVIEIDEWKRMI-----EKYLP  133 (487)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc----cceEEEehhhhhhh-----hhccc
Confidence            9999999999999999999999999999999999999999998654433211    11111111110000     00000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      .........+++++|+|||||||.||+|.++|++++..+......+++.++|+++...|++|..++ ..++.++..|+++
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~  212 (487)
T PRK07638        134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTV  212 (487)
T ss_pred             cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEE
Confidence            011112234678999999999999999999999999988888888889999999999999998876 4688899999999


Q ss_pred             EEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      ++.+.+++..+++.          ++++++|++.++|+++..+.+...            ...+.+.++++|++++.++.
T Consensus       213 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~------------~~~~~~~~~~~G~~l~~~~~  270 (487)
T PRK07638        213 HLMRKFIPNQVLDK----------LETENISVMYTVPTMLESLYKENR------------VIENKMKIISSGAKWEAEAK  270 (487)
T ss_pred             EEcCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcC------------cCCceeEEEEcCCCCCHHHH
Confidence            99999999999988          788999999999999999987511            12345667788999999999


Q ss_pred             HHHHHHh-CCccccccccccccccccccC-CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          321 QQWETIT-GHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       321 ~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      +++.+.+ ++++++.||+||++.+..... ......+++|.|+++++++|+|++|++++.| .|||+++|+.++.|||++
T Consensus       271 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~  350 (487)
T PRK07638        271 EKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIG  350 (487)
T ss_pred             HHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCC
Confidence            9999998 789999999999987655432 2344677899999999999999999999888 899999999999999999


Q ss_pred             Ccccchh-hcccC
Q 015313          398 PKESRTL-SSCLY  409 (409)
Q Consensus       398 ~~~t~~~-~~g~~  409 (409)
                      ++.+++. .+|||
T Consensus       351 ~~~~~~~~~~g~~  363 (487)
T PRK07638        351 GVLARELNADGWM  363 (487)
T ss_pred             HHHHhhhccCCcE
Confidence            9988876 78887

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.8e-49  Score=386.46  Aligned_cols=357  Identities=25%  Similarity=0.345  Sum_probs=300.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|.+++..+||++|+++.++.+||+||+++++++|+.|.+.                 |+++||+|+++++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~~~~v~i~~~~~~~   64 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAAL-----------------GVKKGDRVALLMKNGME   64 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            7899999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++|++++|++++|+++..+.+++..+++++++++++++.............      .+.......       ...
T Consensus        65 ~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~  131 (483)
T PRK03640         65 MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISV------KFAELMNGP-------KEE  131 (483)
T ss_pred             HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhccc------cHHHHhhcc-------ccc
Confidence            9999999999999999999999999999999999999999988665443322110      000000000       000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++++|||||||.||+|.++|.++...+......++++.+|++++.+|++|..++.. ++.++..|+++
T Consensus       132 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~  210 (483)
T PRK03640        132 AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRV  210 (483)
T ss_pred             CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEE
Confidence            01112235688999999999999999999999999888777777788999999999999999999854 78889999999


Q ss_pred             EEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      ++.+..++..+++.          ++++++|++.++|+++..+.+.....         ....++|.+++||+++++.+.
T Consensus       211 ~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~~~lr~~~~~g~~~~~~~~  271 (483)
T PRK03640        211 VLVEKFDAEKINKL----------LQTGGVTIISVVSTMLQRLLERLGEG---------TYPSSFRCMLLGGGPAPKPLL  271 (483)
T ss_pred             EecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcCcc---------ccCCcceEEEEcCCCCCHHHH
Confidence            99999999999998          77899999999999999998653211         234689999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccc--cCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          321 QQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       321 ~~~~~~~~~~v~~~YG~tE~g~~~~~--~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      +.+.+. ++++++.||+||++..+..  ........+++|+|+++++++|.|++ ++++.+ .|||+++||+++.||+++
T Consensus       272 ~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~Gel~v~g~~~~~gy~~~  349 (483)
T PRK03640        272 EQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEEGEIVVKGPNVTKGYLNR  349 (483)
T ss_pred             HHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCceEEEEECcchhhhhcCC
Confidence            988875 9999999999998754332  22234567899999999999999864 777777 899999999999999999


Q ss_pred             Ccccchh-hcccC
Q 015313          398 PKESRTL-SSCLY  409 (409)
Q Consensus       398 ~~~t~~~-~~g~~  409 (409)
                      |+.+++. .+|||
T Consensus       350 ~~~~~~~~~~~~~  362 (483)
T PRK03640        350 EDATRETFQDGWF  362 (483)
T ss_pred             HHHHHHHHhcCCe
Confidence            9999887 67887

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-49  Score=392.62  Aligned_cols=370  Identities=21%  Similarity=0.292  Sum_probs=286.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.+.                 |+++|++|+++++|++
T Consensus        15 ~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~   77 (540)
T PRK05857         15 TVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQ-----------------SVSRGSRVLVISDNGP   77 (540)
T ss_pred             chHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHh-----------------CcCCCCEEEEEcCCCH
Confidence            5788999999999999999863  36899999999999999999994                 8999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-CceeccCCCCCCCCCcccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ  158 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (409)
                      +++++++||+++|++++|+++.++.+++.++++.++++.+++++........+..... ...+.+...............
T Consensus        78 e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (540)
T PRK05857         78 ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDA  157 (540)
T ss_pred             HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccc
Confidence            9999999999999999999999999999999999999999999865432221111110 111111110000000000000


Q ss_pred             chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHHHH
Q 015313          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPL  234 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l  234 (409)
                      ..........++++++++|||||||.||+|.++|+++.+.......    .+....+++.+..+|++|..+++. .+.++
T Consensus       158 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~-~~~~l  236 (540)
T PRK05857        158 ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW-ILTCL  236 (540)
T ss_pred             cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH-HHHHh
Confidence            0011122346689999999999999999999999999876544322    234556789999999999999864 77889


Q ss_pred             hcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCC
Q 015313          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (409)
Q Consensus       235 ~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~  314 (409)
                      ..|+++++ ...++..+++.          ++++++|.++++|.++..+.+....        ...+++++|.+++||++
T Consensus       237 ~~G~~~v~-~~~~~~~~~~~----------i~~~~it~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG~~  297 (540)
T PRK05857        237 MHGGLCVT-GGENTTSLLEI----------LTTNAVATTCLVPTLLSKLVSELKS--------ANATVPSLRLVGYGGSR  297 (540)
T ss_pred             hcceeEEe-cCCChhHHHHH----------HHhcCcceEEeChHHHHHHHhcccc--------CCCcCccceEEEEcCcc
Confidence            99999876 44577788887          8889999999999999999875321        22467899999999999


Q ss_pred             CCHHHHHHHHHHhCCccccccccccccccccccCCC-----CCCccccccccCCeEEEEeeCCCCC-C-----CCc-cce
Q 015313          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGS-D-----AAG-VGE  382 (409)
Q Consensus       315 ~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----~~~~~~~G~p~~~~~~~ivd~~~~~-~-----~~~-~Ge  382 (409)
                      ++....+ +.+.+++++++.||+||++......+..     ....+++|+|++|++++|+|+++.. +     +.+ .||
T Consensus       298 ~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Ge  376 (540)
T PRK05857        298 AIAADVR-FIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGT  376 (540)
T ss_pred             CCchhHH-HHHHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcce
Confidence            9988875 5567799999999999998644322211     2245789999999999999988763 2     234 799


Q ss_pred             EEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          383 ICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       383 l~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      |+|+||+++.|||++|++|++. .||||
T Consensus       377 l~v~g~~~~~GY~~~~~~t~~~~~~g~~  404 (540)
T PRK05857        377 LWIKSPANMLGYWNNPERTAEVLIDGWV  404 (540)
T ss_pred             EEEeCcchhhhhhCCccchhhhcCCCce
Confidence            9999999999999999999988 79997

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.4e-49  Score=387.81  Aligned_cols=375  Identities=22%  Similarity=0.267  Sum_probs=296.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC--ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~--~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|.++++++||++|+++.+  +++||+||.++++++|+.|.+                 +|+++||+|+++++|++
T Consensus        17 ~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~gd~V~i~~~n~~   79 (534)
T PRK05852         17 RIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTR-----------------SGLLPGDRVALRMGSNA   79 (534)
T ss_pred             cHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCcH
Confidence            57889999999999999998743  579999999999999999999                 48999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCC--Cc-cc-
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS--ET-TV-  155 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-  155 (409)
                      +++++++||+++|++++|+++.++.+++.++++.++++++|++.+..................+........  .. .. 
T Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (534)
T PRK05852         80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLD  159 (534)
T ss_pred             HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccc
Confidence            999999999999999999999999999999999999999999864332111100000000011110000000  00 00 


Q ss_pred             --cccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          156 --FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       156 --~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                        ..............++.++++|||||||.||+|.++|+++...+......+.+..+|++++..|++|..+++..++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  239 (534)
T PRK05852        160 AATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLAT  239 (534)
T ss_pred             cccCCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHH
Confidence              000000011112346789999999999999999999999999998888888899999999999999999998888999


Q ss_pred             HhcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          234 LYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       234 l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      +..|+++++.+  .+++..+++.          ++++++|.++++|.++..+.+.....      ....+.+++|.+.++
T Consensus       240 l~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~  303 (534)
T PRK05852        240 LASGGAVLLPARGRFSAHTFWDD----------IKAVGATWYTAVPTIHQILLERAATE------PSGRKPAALRFIRSC  303 (534)
T ss_pred             HhcCCeEEeCCCcCcCHHHHHHH----------HHHcCCcEEEcChHHHHHHHhhcccc------cccccCCCeeEEEEC
Confidence            99999999865  4678888888          78899999999999999998753211      112356789999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccccCC-----CCCCccccccc--cCCeEEEEeeCCCCCCCCc-cceE
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNP--LPGVQVKIAEDESGSDAAG-VGEI  383 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p--~~~~~~~ivd~~~~~~~~~-~Gel  383 (409)
                      |+++++++++.+.+.+++++++.||+||++..++....     ......++|.+  .++++++|+|+++++++.| .|||
T Consensus       304 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel  383 (534)
T PRK05852        304 SAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEV  383 (534)
T ss_pred             CCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEE
Confidence            99999999999999999999999999999866553221     11112234444  6999999999999998887 8999


Q ss_pred             EEeCcchhhhhcCCCcccchh-hcccC
Q 015313          384 CVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       384 ~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +++|++++.|||++|+.|++. .||||
T Consensus       384 ~v~g~~v~~gY~~~~~~t~~~~~~g~~  410 (534)
T PRK05852        384 WLRGTTVVRGYLGDPTITAANFTDGWL  410 (534)
T ss_pred             EEecCcccchhcCCcccchhhhcCCCc
Confidence            999999999999999999988 68897

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=6.9e-49  Score=388.16  Aligned_cols=370  Identities=22%  Similarity=0.338  Sum_probs=304.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|+++++.+||++|+++.++.+||+||++++.++|..|.+.                 |+++|++|+++++|+++
T Consensus        21 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~-----------------gi~~g~~V~v~~~n~~~   83 (542)
T PRK06155         21 RTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAA-----------------GVKRGDRVALMCGNRIE   83 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChH
Confidence            3678899999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhcc-CC-ceeccCCCCCCC---CC--c
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS-GA-KFSLIPPVPNVS---SE--T  153 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~---~~--~  153 (409)
                      ++++++||+++|++++|+++.++.+++..+++++++++++++.+....+....... .. ..+.+.......   ..  .
T Consensus        84 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (542)
T PRK06155         84 FLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTA  163 (542)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchh
Confidence            99999999999999999999999999999999999999999988777665543321 11 111111110000   00  0


Q ss_pred             cccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                      ...............++++++++|||||||.||+|.++|+++..........+++++.+++++.+|++|..++. .++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~  242 (542)
T PRK06155        164 PLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQA  242 (542)
T ss_pred             hhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHH
Confidence            00000000111234568999999999999999999999999988877777778899999999999999999986 47899


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|+++++.+.+++..++..          ++++++|++.++|.++..+.+....        .....+++|.++.|| 
T Consensus       243 l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~l~~~~~g~-  303 (542)
T PRK06155        243 LLAGATYVLEPRFSASGFWPA----------VRRHGATVTYLLGAMVSILLSQPAR--------ESDRAHRVRVALGPG-  303 (542)
T ss_pred             HHcCceEEeeCCCCHHHHHHH----------HHHhCCcEEEchHHHHHHHHcCcCc--------cccccCceEEEEEcC-
Confidence            999999999999999999998          7789999999999999988775322        123456788887655 


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc---c
Q 015313          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP---S  389 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~---~  389 (409)
                       +++++.+.+++.+++++++.||+||++.++.... .....+++|.|.++++++|+|+++++++.| .|||+++|+   +
T Consensus       304 -~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~  381 (542)
T PRK06155        304 -VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFA  381 (542)
T ss_pred             -CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccc
Confidence             5789999999999999999999999987665432 234677899999999999999999999888 899999998   6


Q ss_pred             hhhhhcCCCcccchh-hcccC
Q 015313          390 LFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       390 ~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++.|||++++.|++. .+|||
T Consensus       382 ~~~GY~~~~~~~~~~~~~~~~  402 (542)
T PRK06155        382 FATGYFGMPEKTVEAWRNLWF  402 (542)
T ss_pred             cchhhcCCHHHHHHhhcCCcE
Confidence            999999999999888 68887

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-50  Score=353.15  Aligned_cols=373  Identities=20%  Similarity=0.257  Sum_probs=314.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++|.++||++|++++++.|||+||.+++.++|..|.+                 +|+++||+|.+.+||..+|
T Consensus        29 ~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~-----------------lGi~~Gd~vlvQLpN~~ef   91 (542)
T COG1021          29 TLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRR-----------------LGIKPGDTVLVQLPNVAEF   91 (542)
T ss_pred             cHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCchHHH
Confidence            57789999999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh-----HHHHHHHHhhccCCceeccCCCCCCCC--Ccc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-----YREVLQNVASKSGAKFSLIPPVPNVSS--ETT  154 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  154 (409)
                      ++++||++++|+.+|..-|.....++.++.+.+.++.+|.+..     +.++..++..+......++........  ...
T Consensus        92 ~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~  171 (542)
T COG1021          92 YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEA  171 (542)
T ss_pred             HHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhh
Confidence            9999999999999999889999999999999999999998863     345555555554432222222211111  000


Q ss_pred             cccc--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH-HHHH
Q 015313          155 VFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-NALL  231 (409)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~  231 (409)
                      ....  ......++.++++++++..+.||||.||-+..||.....+++.-.+.++++..+++++.+|..|-+-+. =+.+
T Consensus       172 ~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         172 ALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             hhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchh
Confidence            0000  111123445678899999999999999999999999999888888999999999999999999877552 2467


Q ss_pred             HHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      ..+..|+++|+.+..+++.-+..          |++|+||+..++|.+...+++..+        ....+++|||.+.+|
T Consensus       252 Gv~~agG~VVla~~psp~~~F~l----------Ierh~Vt~tALVPpla~LWlqa~e--------~~~~~LsSLrllQVG  313 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPL----------IERHGVTVTALVPPLASLWLQAAE--------WERADLSSLRLLQVG  313 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHH----------HHHhccceEEeccHHHHHHHHhhh--------cccCCchheeEEeec
Confidence            88999999999999999999998          899999999999999999998743        356789999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccccccccccccc-CCCCCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~~~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      |+.+++.+.+++...+||.+-+.|||.|.-...+.- +.......+.|+|+ |.-+++|+|.+|+++++| +|+|..|||
T Consensus       314 Garl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGP  393 (542)
T COG1021         314 GARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGP  393 (542)
T ss_pred             CcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCC
Confidence            999999999999999999999999999987655532 22345567899998 778999999999999888 899999999


Q ss_pred             chhhhhcCCCcccchh--hcccC
Q 015313          389 SLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      ..++|||+.|++|+++  -||+|
T Consensus       394 YTirGYyrap~HNa~aF~a~GFY  416 (542)
T COG1021         394 YTIRGYYRAPEHNARAFDADGFY  416 (542)
T ss_pred             eeeeeeccCchhhhhccCcCCce
Confidence            9999999999999999  56766

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-49  Score=387.30  Aligned_cols=373  Identities=24%  Similarity=0.382  Sum_probs=313.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.+.++.+|+++|+.+.++.+||+||+++++++|+.|.+.                 |+++|++|+++++|+++
T Consensus         6 ~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------g~~~~~~V~l~~~~~~~   68 (521)
T PRK06187          6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRAL-----------------GVKKGDRVAVFDWNSHE   68 (521)
T ss_pred             CCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            4688999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC--ceeccCCCCC------CCCC
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPN------VSSE  152 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~  152 (409)
                      ++++++||+++|++++|+++..+.+++..+++.+++++++++.+..+.+.++......  ..........      ....
T Consensus        69 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (521)
T PRK06187         69 YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY  148 (521)
T ss_pred             HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccH
Confidence            9999999999999999999999999999999999999999999888777776554432  1222211110      0000


Q ss_pred             ccccc-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 015313          153 TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       153 ~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~  231 (409)
                      .+... ............++++++.|||||||.||+|.++|+++..........+++..+|++++.+|++|..++.. .+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~  227 (521)
T PRK06187        149 EELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PY  227 (521)
T ss_pred             HHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HH
Confidence            00000 00111122345678999999999999999999999999998888888889999999999999999998865 44


Q ss_pred             HHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      .++..|+++++++.+++..+++.          ++++++|.++++|++++.+.+..+.        ...+++++|.+++|
T Consensus       228 ~~l~~G~~~v~~~~~~~~~~~~~----------l~~~~~t~l~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~  289 (521)
T PRK06187        228 LALMAGAKQVIPRRFDPENLLDL----------IETERVTFFFAVPTIWQMLLKAPRA--------YFVDFSSLRLVIYG  289 (521)
T ss_pred             HHHHhCCEEEecCCCCHHHHHHH----------HHHhCCeEEEchHHHHHHHHcCcCC--------CccCcchhhEEEEc
Confidence            58999999999999888888888          7889999999999999999886432        23467889999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccccCCCC------CCccccccccCCeEEEEeeCCCCCCCC--c-cce
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA------RKAGTVGNPLPGVQVKIAEDESGSDAA--G-VGE  382 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~------~~~~~~G~p~~~~~~~ivd~~~~~~~~--~-~Ge  382 (409)
                      |+++++++.+.+.+.+++++++.||+||++.+........      ...+++|+|+++++++|+|+++++++.  | .||
T Consensus       290 Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Ge  369 (521)
T PRK06187        290 GAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGE  369 (521)
T ss_pred             CcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeE
Confidence            9999999999999999999999999999986655433222      266789999999999999999988877  6 799


Q ss_pred             EEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          383 ICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       383 l~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      |+++|++++.||+++++.+.+. .+|||
T Consensus       370 l~v~~~~~~~~y~~~~~~~~~~~~~~~~  397 (521)
T PRK06187        370 IIVRGPWLMQGYWNRPEATAETIDGGWL  397 (521)
T ss_pred             EEEECcchhhhhcCCHHHHHHHhhCCce
Confidence            9999999999999999998888 67776

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1e-48  Score=387.96  Aligned_cols=372  Identities=23%  Similarity=0.345  Sum_probs=302.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ++.+.|+++++.+||++|++++. +.+||+||+++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        24 ~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~-----------------G~~~gd~V~i~~~n~~~   86 (547)
T PRK06087         24 SLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAK-----------------GIEPGDRVAFQLPGWCE   86 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            57789999999999999999865 7999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh-----HHHHHHHHhhccCC--ceeccCCCCCCCCCc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-----YREVLQNVASKSGA--KFSLIPPVPNVSSET  153 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++..     ..+.+.........  ..+............
T Consensus        87 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK06087         87 FTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSL  166 (547)
T ss_pred             HHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCcc
Confidence            99999999999999999999999999999999999999999753     23333333232221  111111111000000


Q ss_pred             cc---ccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHH
Q 015313          154 TV---FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA  229 (409)
Q Consensus       154 ~~---~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~  229 (409)
                      ..   ... ...........+++++|+|||||||.||+|.++|.++...........++.++|++++.+|++|.++++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~  246 (547)
T PRK06087        167 SLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG  246 (547)
T ss_pred             CHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence            00   000 00001123456899999999999999999999999999888887777888999999999999999999888


Q ss_pred             HHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEE
Q 015313          230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (409)
Q Consensus       230 ~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~  309 (409)
                      ++.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+++....        ...+++++|.++
T Consensus       247 ~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~~--------~~~~~~~lr~i~  308 (547)
T PRK06087        247 VTAPFLIGARSVLLDIFTPDACLAL----------LEQQRCTCMLGATPFIYDLLNLLEK--------QPADLSALRFFL  308 (547)
T ss_pred             HHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCCEEeccHHHHHHHHhcccc--------CCCCCCCeEEEE
Confidence            9999999999999999999999988          7779999999988887777765321        234678999999


Q ss_pred             eeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC--CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEe
Q 015313          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK  386 (409)
Q Consensus       310 ~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~--~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~  386 (409)
                      +||+++++++.+.+.+. ++++++.||+||++.+.......  ....+++|.|+++++++++|+++++++.| .|||+++
T Consensus       309 ~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~  387 (547)
T PRK06087        309 CGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASR  387 (547)
T ss_pred             EcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEe
Confidence            99999999999988775 99999999999998765543322  12345789999999999999999998888 8999999


Q ss_pred             CcchhhhhcCCCcccchhh--cccC
Q 015313          387 SPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       387 g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |++++.|||++|+.+.+.+  +|||
T Consensus       388 g~~~~~gy~~~~~~~~~~~~~~g~~  412 (547)
T PRK06087        388 GPNVFMGYLDEPELTARALDEEGWY  412 (547)
T ss_pred             cccccccccCCHHHHHHHhCCCCCc
Confidence            9999999999999998874  6887

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.9e-49  Score=393.88  Aligned_cols=365  Identities=21%  Similarity=0.304  Sum_probs=284.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC---------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~---------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (409)
                      +|+.+.|.++++.+||++|+++.         .+.+||+||.++++++|+.|.+                  .+++||+|
T Consensus        21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~------------------~~~~gd~V   82 (631)
T PRK07769         21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ------------------VTKPGDRV   82 (631)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            36788999999999999999863         1579999999999999999987                  37899999


Q ss_pred             EEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCC--hHHHHHHHhcCCceEEEechhHHHHHHHHhhccC----CceeccC
Q 015313           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (409)
Q Consensus        72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (409)
                      +++++|+++++++++||+++|++++|+ ++..+  .+++.++++.++++++|++.+..+.+........    ...+.+.
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 45544  5789999999999999999877665544332221    1111111


Q ss_pred             CCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHH
Q 015313          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (409)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (409)
                      .....     ..   .........++++++|+|||||||.||+|.++|+++...+......+++..+|+++..+|++|..
T Consensus       163 ~~~~~-----~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        163 AVPDE-----VG---ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM  234 (631)
T ss_pred             ccccc-----cc---cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence            10000     00   00111234568999999999999999999999999998888888888888999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEccC--c--chHHHHHHHHhhcCCCCCCccccc---eeeecchHHHHHHHHhhhhhhHHHHHH
Q 015313          225 GLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAI---TAFTGVPTMYTRLIQGYEAMDTELQAA  297 (409)
Q Consensus       225 g~~~~~~~~l~~G~~i~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~v---t~~~~~P~~l~~l~~~~~~~~~~~~~~  297 (409)
                      |+.. .+.+++.|++++++.+  +  ++..+++.          ++++++   +.+..+|.++..+...... +.  ...
T Consensus       235 gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~p~~~~~l~~~~~~-~~--~~~  300 (631)
T PRK07769        235 GLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRE----------LARKPGGTGGTFSAAPNFAFEHAAARGL-PK--DGE  300 (631)
T ss_pred             hhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHH----------HHhhccccCceEeeCCchHHHHHHhhcc-ch--hcc
Confidence            9865 5667788999988753  3  67777777          555665   7899999988776543100 00  000


Q ss_pred             hhhhhccceEEEeeCCCCCHHHHHHHHHHh---CC---ccccccccccccccccccCCCC--------------------
Q 015313          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRGA--------------------  351 (409)
Q Consensus       298 ~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~tE~g~~~~~~~~~~--------------------  351 (409)
                      ...+++++|.+++||+++++++.++|.+.|   |+   .+++.||+||++..++..+...                    
T Consensus       301 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  380 (631)
T PRK07769        301 PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEV  380 (631)
T ss_pred             cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEec
Confidence            134688999999999999999999999987   33   5899999999876544322110                    


Q ss_pred             -------CCccccccccCCeEEEEeeC-CCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          352 -------RKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       352 -------~~~~~~G~p~~~~~~~ivd~-~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                             ....++|+|.++.+++|+|+ ++++++.| .|||+++||+++.||||+|++|++.|
T Consensus       381 ~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f  443 (631)
T PRK07769        381 PADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATF  443 (631)
T ss_pred             CCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHH
Confidence                   01247899999999999994 57888887 89999999999999999999999885

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-48  Score=386.43  Aligned_cols=372  Identities=23%  Similarity=0.358  Sum_probs=303.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.+.++++.+|+++|+++.++.+||.||.++++++|..|.+.                 |+++|++|+++++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~~   79 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRR-----------------GVGFGDRVLILMLNRTE   79 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            5889999999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-Ccee-ccCCCCC--CCCCcccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFS-LIPPVPN--VSSETTVF  156 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~  156 (409)
                      ++++++||+++|++++|+++..+.+++.++++++++++++++......+........ .... .......  .....+..
T Consensus        80 ~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (542)
T PRK07786         80 FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL  159 (542)
T ss_pred             HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHh
Confidence            999999999999999999999999999999999999999999877665544332211 1111 1111000  00000000


Q ss_pred             c-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhccc-CCCCeEEEecCchhHHHHHHHHHHHH
Q 015313          157 D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAPL  234 (409)
Q Consensus       157 ~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~~~~~~~l  234 (409)
                      . ............+++++++|||||||.||+|.++|+++...+......++. ...+++++..|++|.+|+. .++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l  238 (542)
T PRK07786        160 AEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGL  238 (542)
T ss_pred             hccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHH
Confidence            0 000111122345689999999999999999999999999888877777666 5778999999999999984 588999


Q ss_pred             hcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       235 ~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      ..|+++++.+  .+++..+++.          ++++++|.++++|.++..++.......         ...++|.+++||
T Consensus       239 ~~G~~~v~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~~~---------~~~~lr~i~~gg  299 (542)
T PRK07786        239 LLGAPTVIYPLGAFDPGQLLDV----------LEAEKVTGIFLVPAQWQAVCAEQQARP---------RDLALRVLSWGA  299 (542)
T ss_pred             HccCEEEEccCCCcCHHHHHHH----------HHHcCCeEEEehHHHHHHHHhCcccCc---------cCcceEEEEECC
Confidence            9999999865  5688888888          788999999999999999987633211         123699999999


Q ss_pred             CCCCHHHHHHHHHHh-CCccccccccccccccccccC--CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~--~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      +++++++.+.+.+.+ +.++++.||+||++.+.....  ......+++|+|++++.++|+|++++.++.| .|||+++|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~  379 (542)
T PRK07786        300 APASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAP  379 (542)
T ss_pred             CCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEECh
Confidence            999999999999988 789999999999986654322  2234567899999999999999999888887 899999999


Q ss_pred             chhhhhcCCCcccchh-hcccC
Q 015313          389 SLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      .++.||+++|+.|++. .+|||
T Consensus       380 ~~~~gy~~~~~~~~~~f~~~~~  401 (542)
T PRK07786        380 TLMSGYWNNPEATAEAFAGGWF  401 (542)
T ss_pred             hhhhhhcCCHHHHHHHhhCCcc
Confidence            9999999999999988 57887

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-48  Score=387.21  Aligned_cols=374  Identities=22%  Similarity=0.346  Sum_probs=296.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+|+++|+++.++.+||.||.++++++|++|.++                .|+++||+|+++++|++++
T Consensus        25 ~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~gi~~gd~V~i~~~n~~e~   88 (562)
T PRK12492         25 SVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQH----------------TDLVPGDRIAVQMPNVLQY   88 (562)
T ss_pred             cHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            678899999999999999999999999999999999999999873                3889999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccC-------CC--------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP-------PV--------  146 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------  146 (409)
                      +++++||+++|++++|+++..+.+++.+++++++++++++++...+.+...............       ..        
T Consensus        89 ~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
T PRK12492         89 PIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTV  168 (562)
T ss_pred             HHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccc
Confidence            999999999999999999999999999999999999999987655544433222111100000       00        


Q ss_pred             -C-------C--CCCCcccccc-----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc----
Q 015313          147 -P-------N--VSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----  207 (409)
Q Consensus       147 -~-------~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----  207 (409)
                       .       .  ..........     ...........+++++|+|||||||.||+|.++|+++...+......+.    
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK12492        169 VDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGP  248 (562)
T ss_pred             cccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccc
Confidence             0       0  0000000000     0000112345678999999999999999999999999877766554432    


Q ss_pred             -----cCC-CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHH
Q 015313          208 -----YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY  280 (409)
Q Consensus       208 -----~~~-~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l  280 (409)
                           ... .+++++.+|++|.+++....+..+..|.+.++.. ..++..+++.          ++++++|++.++|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~  318 (562)
T PRK12492        249 DGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKE----------LGKWRFSALLGLNTLF  318 (562)
T ss_pred             cccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHH----------HHHhCCceeeCcHHHH
Confidence                 222 3578899999999998766777788888777654 4577777777          7889999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCC-CCCCcccccc
Q 015313          281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGN  359 (409)
Q Consensus       281 ~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~  359 (409)
                      ..+.+...        ....+++++|.+++||+++++.+.+.|.+.+++++++.||+||+++++..... .....+++|+
T Consensus       319 ~~l~~~~~--------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  390 (562)
T PRK12492        319 VALMDHPG--------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGI  390 (562)
T ss_pred             HHHHhCcC--------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccce
Confidence            99887522        12345789999999999999999999999899999999999999876654332 2335678999


Q ss_pred             ccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          360 PLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       360 p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |+++++++|+|+++++++.| .|||+|+|++++.|||++|++|++.+  +|||
T Consensus       391 p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        391 PVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99999999999999988888 89999999999999999999999885  6887

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-48  Score=383.73  Aligned_cols=372  Identities=20%  Similarity=0.308  Sum_probs=297.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|...++++||++|++++++++||+||.+++.++|..|.+.                 |+++|++|+++++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~v~i~~~~~~~   69 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAAR-----------------GVRKGDRILVHSRNCNQ   69 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHH
Confidence            6788999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC--ceeccCCCCCCCCCcccccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ  158 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (409)
                      ++++++||+++|++++|+++..+.+++.++++.++++.++++++....+.........  ..+.+...............
T Consensus        70 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (528)
T PRK07470         70 MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR  149 (528)
T ss_pred             HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc
Confidence            9999999999999999999999999999999999999999998876655544322211  11111110000000000000


Q ss_pred             --chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc--ccCCCCeEEEecCchhHHHHHHHHHHHH
Q 015313          159 --SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPL  234 (409)
Q Consensus       159 --~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~~~~g~~~~~~~~l  234 (409)
                        ..........++++++|+|||||||.||+|.++|+++...+.......  +....|+++..+|++|..++.. ++ .+
T Consensus       150 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~-~~  227 (528)
T PRK07470        150 HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ-LC-QV  227 (528)
T ss_pred             CCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH-HH-HH
Confidence              000112234568899999999999999999999999976555433322  4567899999999999998853 44 57


Q ss_pred             hcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       235 ~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      ..|++.++.+  .+++..+++.          ++++++|.+.++|++++.+.+....        ...+++++|.+++||
T Consensus       228 ~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG  289 (528)
T PRK07470        228 ARGAATVLLPSERFDPAEVWAL----------VERHRVTNLFTVPTILKMLVEHPAV--------DRYDHSSLRYVIYAG  289 (528)
T ss_pred             hcCceEEEecccCcCHHHHHHH----------HHhcCCeEEechHHHHHHHHhCcCc--------CCCCCcceEEEEEcC
Confidence            7787777665  4678888887          7889999999999999999875321        224578899999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccccCC--------CCCCccccccccCCeEEEEeeCCCCCCCCc-cceE
Q 015313          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--------GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEI  383 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~--------~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel  383 (409)
                      +++++++.+++.+.++.++++.||+||+++.+.....        .....+++|.|+++++++|+|+++++++.| .|||
T Consensus       290 ~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel  369 (528)
T PRK07470        290 APMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEI  369 (528)
T ss_pred             CCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEE
Confidence            9999999999999899999999999998865542211        123457899999999999999999998888 8999


Q ss_pred             EEeCcchhhhhcCCCcccchh-hcccC
Q 015313          384 CVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       384 ~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +++|++++.|||++|+.+++. .+|||
T Consensus       370 ~i~~~~~~~gy~~~~~~~~~~~~~~~~  396 (528)
T PRK07470        370 CVIGPAVFAGYYNNPEANAKAFRDGWF  396 (528)
T ss_pred             EEeCCccchhhcCCHHHHHhhhcCCcE
Confidence            999999999999999999887 68887

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2e-48  Score=390.05  Aligned_cols=365  Identities=20%  Similarity=0.282  Sum_probs=281.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC---------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~---------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (409)
                      +|+.+.+.++++++|+++|+++.         .+.+||+||.++++++|++|.+                  .+++||+|
T Consensus        34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~V   95 (612)
T PRK12476         34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ------------------VAGPGDRV   95 (612)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            46788899999999999999862         1489999999999999999987                  48999999


Q ss_pred             EEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCC--hHHHHHHHhcCCceEEEechhHHHHHHHHhhccC----CceeccC
Q 015313           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (409)
Q Consensus        72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (409)
                      +++++|+++++++++||+++|++++|+ ++..+  .+++.++++.++++++|++++..+.+........    ...+.+.
T Consensus        96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~  175 (612)
T PRK12476         96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID  175 (612)
T ss_pred             EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence            999999999999999999999999999 57766  7899999999999999999887766554433221    1111111


Q ss_pred             CCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc-cCCCCeEEEecCchhH
Q 015313          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHCLPLHHV  223 (409)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~  223 (409)
                      .....        ...........++++++|+|||||||.||||.++|+++...+......++ +.+++++++.+|++|.
T Consensus       176 ~~~~~--------~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~  247 (612)
T PRK12476        176 AIPDS--------AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD  247 (612)
T ss_pred             ccccc--------ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence            11000        00011112345689999999999999999999999999887777666666 6788999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEccC--c--chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313          224 HGLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (409)
Q Consensus       224 ~g~~~~~~~~l~~G~~i~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~  299 (409)
                      .|+.. .+.+++.|++.+++..  +  ++..+++.+.        ..+++++.++.+|.++..++......    .....
T Consensus       248 ~g~~~-~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~--------~~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~  314 (612)
T PRK12476        248 MGLSM-IGFPAVYGGHSTLMSPTAFVRRPQRWIKALS--------EGSRTGRVVTAAPNFAYEWAAQRGLP----AEGDD  314 (612)
T ss_pred             cchHH-HHHHHhcCCeEEEECHHHHHHHHHHHHHHHh--------hhccCCeEEEeCCcHHHHHHHHhcCh----hhhcC
Confidence            99865 4444455555555543  2  6777777621        14588999999999988877631100    01123


Q ss_pred             hhhccceEEEeeCCCCCHHHHHHHHHHh---CC---cccccccccccccccccc-CCC----------------------
Q 015313          300 SAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNP-LRG----------------------  350 (409)
Q Consensus       300 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~tE~g~~~~~~-~~~----------------------  350 (409)
                      .+++++| +++||+++++++.++|.+.|   |+   .+++.||+||++..+... +..                      
T Consensus       315 ~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (612)
T PRK12476        315 IDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAA  393 (612)
T ss_pred             cchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCC
Confidence            3578899 99999999999999999987   44   489999999987544321 110                      


Q ss_pred             ----CCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          351 ----ARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       351 ----~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                          ....+++|+|+++++++|+|++ |++++.| .|||+++||+++.||||+|++|++.+
T Consensus       394 ~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  454 (612)
T PRK12476        394 DAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTF  454 (612)
T ss_pred             CCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHH
Confidence                0123578999999999999988 8888888 89999999999999999999999886

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.4e-48  Score=384.68  Aligned_cols=374  Identities=24%  Similarity=0.317  Sum_probs=301.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +++.+.|.+.++.+|+++|+++  .++.+||+||.++++++|..|.+.                 |+++||+|+++++|+
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~   78 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLAL-----------------GIEKGDRVGIWAPNV   78 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            4688999999999999999988  567899999999999999999994                 899999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC--------------C-
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG--------------A-  138 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~--------------~-  138 (409)
                      ++++++++||+++|++++|+++..+.+++..+++++++++++++....     ..+.+......              . 
T Consensus        79 ~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (559)
T PRK08315         79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELR  158 (559)
T ss_pred             hHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCce
Confidence            999999999999999999999999999999999999999999986432     22222222110              0 


Q ss_pred             ceeccCCCCC--CCCCccccc-------cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccC
Q 015313          139 KFSLIPPVPN--VSSETTVFD-------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (409)
Q Consensus       139 ~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~  209 (409)
                      ..+.......  .........       ............+++++++|||||||.||+|.++|+++...+......+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~  238 (559)
T PRK08315        159 RVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLT  238 (559)
T ss_pred             eEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCC
Confidence            0000000000  000000000       0000112223567899999999999999999999999999888888888999


Q ss_pred             CCCeEEEecCchhHHHHHHHHHHHHhcCCEEEE-ccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhh
Q 015313          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEF-MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (409)
Q Consensus       210 ~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  288 (409)
                      .+|+++..+|++|..+++..++.++..|+++++ ...+++..+++.          ++++++|.+.++|.++..++....
T Consensus       239 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~~~~~~~  308 (559)
T PRK08315        239 EEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA----------VEEERCTALYGVPTMFIAELDHPD  308 (559)
T ss_pred             CCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH----------HHHcCCeEEecchHHHHHHHhCcc
Confidence            999999999999999998889999999999994 456788888888          788999999999999988876421


Q ss_pred             hhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCC-ccccccccccccccccccCCC---CCCccccccccCCe
Q 015313          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGV  364 (409)
Q Consensus       289 ~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~~---~~~~~~~G~p~~~~  364 (409)
                              .....++++|.+++||++++.++.+++.+.++. ++++.||+||++.+++.....   .....++|+|++++
T Consensus       309 --------~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~  380 (559)
T PRK08315        309 --------FARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHL  380 (559)
T ss_pred             --------cCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCc
Confidence                    123457889999999999999999999998875 599999999998765533221   23567899999999


Q ss_pred             EEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          365 QVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       365 ~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++|+|++ ++.++.| .|||+|+|++++.|||++|+.+++.+  ++||
T Consensus       381 ~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~  429 (559)
T PRK08315        381 EVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWM  429 (559)
T ss_pred             EEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCE
Confidence            99999988 8888887 89999999999999999999998875  7786

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.9e-49  Score=399.73  Aligned_cols=357  Identities=24%  Similarity=0.360  Sum_probs=283.0

Q ss_pred             hHHHHHHHhcccCCC-eeEEEeC-CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARD-SVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~-~~a~~~~-~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|.+.++++|+ ++|+.+. .+.+||+||.++++++|++|.+                  .+++||+|+++++|++
T Consensus       205 t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~Val~~~n~~  266 (718)
T PRK08043        205 TLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEK------------------YSVEGERIGLMLPNAT  266 (718)
T ss_pred             CHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHH------------------hcCCCceEEEEcCCcH
Confidence            678899999999998 6888763 4789999999999999999987                  3589999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHH--HHhhccC-CceeccCCCCCCCCCccc-
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSG-AKFSLIPPVPNVSSETTV-  155 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-  155 (409)
                      +++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+...  ....... ...+.+............ 
T Consensus       267 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  346 (718)
T PRK08043        267 ISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKL  346 (718)
T ss_pred             HHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHH
Confidence            999999999999999999999999999999999999999999987654311  0111111 111111110000000000 


Q ss_pred             ---ccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH
Q 015313          156 ---FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       156 ---~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~  231 (409)
                         ... ..........++|+++++|||||||.||+|.++|+++...+......++++.+|++++.+|++|.+++...++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~  426 (718)
T PRK08043        347 WIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLF  426 (718)
T ss_pred             HHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHH
Confidence               000 0000112235689999999999999999999999999998888877788899999999999999999877788


Q ss_pred             HHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       232 ~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      .++..|+++++.+. ++...+++.          +.++++|+++++|+++..+.+.          ....++++||.+++
T Consensus       427 ~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~----------~~~~~~~~lr~i~~  486 (718)
T PRK08043        427 TPLLTGAEVFLYPSPLHYRIVPEL----------VYDRNCTVLFGTSTFLGNYARF----------ANPYDFARLRYVVA  486 (718)
T ss_pred             HHHHcCCEEEEeCCcccHHHHHHH----------HHhcCCeEEEchHHHHHHhhhh----------cCcccccceEEEEE
Confidence            99999999998875 455666666          7779999999999998877542          12245789999999


Q ss_pred             eCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcch
Q 015313          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL  390 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~  390 (409)
                      ||+++++++.+.|.+.+|+++++.||+||++++++.........+++|+|+|+++++|+|+++.   ...|||+++|+++
T Consensus       487 gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~---~~~Gel~v~g~~v  563 (718)
T PRK08043        487 GAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGI---EQGGRLQLKGPNI  563 (718)
T ss_pred             eCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCC---CCceEEEEecCCc
Confidence            9999999999999999999999999999998665533323346789999999999999997753   2259999999999


Q ss_pred             hhhhcC--CCc
Q 015313          391 FKEYWK--LPK  399 (409)
Q Consensus       391 ~~gY~~--~~~  399 (409)
                      +.|||+  +|+
T Consensus       564 ~~GY~~~e~~~  574 (718)
T PRK08043        564 MNGYLRVEKPG  574 (718)
T ss_pred             cccccCCCCcc
Confidence            999999  455

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-48  Score=382.17  Aligned_cols=371  Identities=25%  Similarity=0.358  Sum_probs=304.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      |+.+.|.++++++|+++|++++++.+||.||.+++++++..|.+.                 |+++|++|+++++|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gv~~~~~V~i~~~~~~~~   75 (524)
T PRK06188         13 TYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEAL-----------------GLGTGDAVALLSLNRPEV   75 (524)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHH
Confidence            678899999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh-HHHHHHHHhhccC-Cc-eeccCCCCCCCCCccc-cc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSG-AK-FSLIPPVPNVSSETTV-FD  157 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~~  157 (409)
                      +++++||+++|++++|+++..+.+++.++++.++++.+++++. ............. .. .+.+............ ..
T Consensus        76 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (524)
T PRK06188         76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAK  155 (524)
T ss_pred             HHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhc
Confidence            9999999999999999999999999999999999999999976 3333333222211 11 1111111100000000 00


Q ss_pred             cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      ...........++++++++|||||||.||+|.++|.++...+......++...+|++++.+|++|..++.  ++.++..|
T Consensus       156 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G  233 (524)
T PRK06188        156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRG  233 (524)
T ss_pred             cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcC
Confidence            0000011122346799999999999999999999999999998888888999999999999999998874  57789999


Q ss_pred             CEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      +++++.+.+++..+++.          ++++++|++.++|.++..+++....        ....++++|.+++||+++++
T Consensus       234 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~--------~~~~l~~lr~~~~gg~~~~~  295 (524)
T PRK06188        234 GTVIVLAKFDPAEVLRA----------IEEQRITATFLVPTMIYALLDHPDL--------RTRDLSSLETVYYGASPMSP  295 (524)
T ss_pred             CEEEEcCCCCHHHHHHH----------HHHhCCEEEEehHHHHHHHHhCcCc--------cCCCCcceeEEEEcCCCCCH
Confidence            99999999999999988          7889999999999999999875321        22467899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccccCC------CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLR------GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~------~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      +..+.+.+.++..+.+.||+||++..+.....      ......++|+|+++++++|+|+++++++.| .|||+++|+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~  375 (524)
T PRK06188        296 VRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLV  375 (524)
T ss_pred             HHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcch
Confidence            99999999899999999999999755442221      123567899999999999999999988887 89999999999


Q ss_pred             hhhhcCCCcccchh-hcccC
Q 015313          391 FKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       391 ~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +.||+++++.+++. .+|||
T Consensus       376 ~~gy~~~~~~~~~~~~~g~~  395 (524)
T PRK06188        376 MDGYWNRPEETAEAFRDGWL  395 (524)
T ss_pred             hhhhcCChHHhhhhhcCCce
Confidence            99999999999887 78887

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.5e-48  Score=380.95  Aligned_cols=365  Identities=23%  Similarity=0.378  Sum_probs=301.6

Q ss_pred             HHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHH
Q 015313            3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~   82 (409)
                      +.+.|.+.++.+|+++|+.+.++++||+||.+++.++|+.|.+.                 |+++|++|+++++|+++++
T Consensus         2 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~-----------------g~~~~~~V~i~~~n~~~~~   64 (515)
T TIGR03098         2 LHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGL-----------------GLARGERVAIYLDKRLETV   64 (515)
T ss_pred             HHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHHH
Confidence            67889999999999999999999999999999999999999984                 8899999999999999999


Q ss_pred             HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-C-ceeccCCCCCCC-------CCc
Q 015313           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-A-KFSLIPPVPNVS-------SET  153 (409)
Q Consensus        83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-------~~~  153 (409)
                      ++++||+++|++++|+++..+.+++..+++++++++++++++....+........ . ..+.+.......       .+.
T Consensus        65 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (515)
T TIGR03098        65 TAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWP  144 (515)
T ss_pred             HHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHH
Confidence            9999999999999999999999999999999999999999876665544433221 1 111111111000       000


Q ss_pred             cccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                      ................+++++++|||||||.||+|.+||+++...+......+....+|++++.+|++|..++. .++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~  223 (515)
T TIGR03098       145 KLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTTA  223 (515)
T ss_pred             HhhccccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHHH
Confidence            00000000011223457899999999999999999999999999888888888888999999999999999985 58899


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+..         ....+++++|.+++||+
T Consensus       224 l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~~~l~~~~~~g~  284 (515)
T TIGR03098       224 FYVGATVVLHDYLLPRDVLKA----------LEKHGITGLAAVPPLWAQLAQLD---------WPESAAPSLRYLTNSGG  284 (515)
T ss_pred             HHcCCEEEEcCCCCHHHHHHH----------HHHcCCceEecChHHHHHHHhcc---------cCCCCccceEEEEecCC
Confidence            999999999999999999988          77799999999999999887631         11235678999999999


Q ss_pred             CCCHHHHHHHHHHh-CCccccccccccccccccccC-CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          314 ALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       314 ~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      ++++++.+.+++.+ ++.+++.||+||++....... ....+.+++|+|+++++++|+|++++.++.+ .|||+++|+.+
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~  364 (515)
T TIGR03098       285 AMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALV  364 (515)
T ss_pred             cCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchh
Confidence            99999999999998 789999999999876544332 2235678999999999999999999888777 89999999999


Q ss_pred             hhhhcCCCcccchh
Q 015313          391 FKEYWKLPKESRTL  404 (409)
Q Consensus       391 ~~gY~~~~~~t~~~  404 (409)
                      +.|||++++.|++.
T Consensus       365 ~~gy~~~~~~~~~~  378 (515)
T TIGR03098       365 AMGYWNDPEKTAER  378 (515)
T ss_pred             hccccCCchhhhhh
Confidence            99999999988765

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=6.3e-48  Score=379.07  Aligned_cols=371  Identities=25%  Similarity=0.375  Sum_probs=300.6

Q ss_pred             HHHHHHh-cccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHH
Q 015313            4 FKAAYKK-GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (409)
Q Consensus         4 ~~~l~~~-~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~   82 (409)
                      .+.+.++ ++.+||++|+++++..+||.||.++++++|+.|.+                 .|+++|++|+++++|+++++
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~-----------------~g~~~g~~v~l~~~~~~~~~   69 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRR-----------------LGVKREERVLLLMLDGVDFP   69 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHH
Confidence            3455555 56799999999999999999999999999999998                 48999999999999999999


Q ss_pred             HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCCCC--CCcccc-cc
Q 015313           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVS--SETTVF-DQ  158 (409)
Q Consensus        83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~-~~  158 (409)
                      ++++||+++|++++|+++..+.+++.++++.+++++++++++..+.+.+........ .+.........  ...+.. ..
T Consensus        70 ~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (508)
T TIGR02262        70 IAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATE  149 (508)
T ss_pred             HHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcC
Confidence            999999999999999999999999999999999999999988776665554332211 11111110000  000000 00


Q ss_pred             chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHH-HHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      ..........++++++++|||||||.||+|.++|+++...+.. ....++++.+|++++..|++|..++...++.++..|
T Consensus       150 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G  229 (508)
T TIGR02262       150 SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVG  229 (508)
T ss_pred             CCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcC
Confidence            0011122345689999999999999999999999999887765 445668889999999999999999877788889999


Q ss_pred             CEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCC
Q 015313          238 ATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP  316 (409)
Q Consensus       238 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~  316 (409)
                      +++++.++ +++..++..          ++++++|.+.++|.++..+++...        ......+++|.+++||++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~~~~~~~--------~~~~~~~~l~~~~~~G~~l~  291 (508)
T TIGR02262       230 ATTVLMGERPTPDAVFDR----------LRRHQPTIFYGVPTLYAAMLADPN--------LPAEDQVRLRLCTSAGEALP  291 (508)
T ss_pred             ceEEEeCCCCCHHHHHHH----------HHHHCCcEEecchHHHHHHhcCcc--------ccccccccceeEEEcCCCCC
Confidence            99998764 578888888          777999999999999988776421        11234568999999999999


Q ss_pred             HHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhc
Q 015313          317 LPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (409)
Q Consensus       317 ~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~  395 (409)
                      +++.+.|.+.+++++++.||+||++.+...........+++|.|+++++++|+|+++++++.| .|||+++|++++.||+
T Consensus       292 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~  371 (508)
T TIGR02262       292 AEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYW  371 (508)
T ss_pred             HHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccC
Confidence            999999999999999999999999876554333334567899999999999999888888888 8999999999999999


Q ss_pred             CCCcccchh-hcccC
Q 015313          396 KLPKESRTL-SSCLY  409 (409)
Q Consensus       396 ~~~~~t~~~-~~g~~  409 (409)
                      ++|+++++. .+|||
T Consensus       372 ~~~~~~~~~~~~~~~  386 (508)
T TIGR02262       372 NNRAKTRDTFQGEWT  386 (508)
T ss_pred             CCHHHhHhhhhcCce
Confidence            999999887 67786

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.8e-48  Score=417.83  Aligned_cols=372  Identities=25%  Similarity=0.370  Sum_probs=303.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC-CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~-~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ++.+.+.++++++||++|+++. ++.+||+||.++++++|+.|.+                  ++++||+|+++++|+++
T Consensus       616 ~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~------------------~~~~g~~V~i~~~n~~~  677 (1146)
T PRK08633        616 PLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR------------------ELKDEENVGILLPPSVA  677 (1146)
T ss_pred             CHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH------------------hCCCCCeEEEECCCchH
Confidence            5678899999999999999974 6799999999999999999977                  57999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhh--ccC--CceeccCCCCC-CCCCccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS--KSG--AKFSLIPPVPN-VSSETTV  155 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~-~~~~~~~  155 (409)
                      ++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+.....  ...  ........... .......
T Consensus       678 ~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1146)
T PRK08633        678 GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL  757 (1146)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHH
Confidence            999999999999999999999999999999999999999999887766542110  011  11111111000 0000000


Q ss_pred             c--------ccchhhh--ccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHH
Q 015313          156 F--------DQSQAEK--MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (409)
Q Consensus       156 ~--------~~~~~~~--~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  225 (409)
                      .        .......  .....++|+++++|||||||.||+|.++|+++...+......++..++|++++.+|++|..+
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g  837 (1146)
T PRK08633        758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG  837 (1146)
T ss_pred             HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence            0        0000000  13346789999999999999999999999999999888888888999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 015313          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (409)
Q Consensus       226 ~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  304 (409)
                      +...++.++..|+++++.+ .+++..+++.          ++++++|++.++|++++.+.+..        .....++++
T Consensus       838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~  899 (1146)
T PRK08633        838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKL----------VAKHRATILLGTPTFLRLYLRNK--------KLHPLMFAS  899 (1146)
T ss_pred             HHHHHHHHHHCCCEEEEeCCCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhcc--------ccCcccCCC
Confidence            9777889999999999876 4678888888          78899999999999999887742        123346789


Q ss_pred             ceEEEeeCCCCCHHHHHHHHHHhCCcccccccccccccccccc-CC---------CCCCccccccccCCeEEEEeeC-CC
Q 015313          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LR---------GARKAGTVGNPLPGVQVKIAED-ES  373 (409)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~---------~~~~~~~~G~p~~~~~~~ivd~-~~  373 (409)
                      +|.+++||+++++++.+++++.+|+++++.||+||++++++.. ++         ...+.+++|+|+|+++++|+|+ ++
T Consensus       900 lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~  979 (1146)
T PRK08633        900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETF  979 (1146)
T ss_pred             eeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCC
Confidence            9999999999999999999999999999999999998655422 11         1235678999999999999995 46


Q ss_pred             CCCCCc-cceEEEeCcchhhhhcCCCcccchh-hc----ccC
Q 015313          374 GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SS----CLY  409 (409)
Q Consensus       374 ~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~----g~~  409 (409)
                      ++++.| .|||+++||+++.|||++|+.|++. .+    |||
T Consensus       980 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633        980 EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred             ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence            788887 8999999999999999999999988 45    787

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=4.3e-48  Score=383.23  Aligned_cols=370  Identities=19%  Similarity=0.258  Sum_probs=295.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +|+.+.+.+.++.+|+++|+++.  ++.+||.||.+++.++|..|.+.                 |+++||+|+++++|+
T Consensus        28 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-----------------g~~~g~~V~i~~~~~   90 (546)
T PLN02330         28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSL-----------------GLRKGQVVVVVLPNV   90 (546)
T ss_pred             CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCc
Confidence            47889999999999999999974  57999999999999999999994                 899999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCC--CCCCCcccc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP--NVSSETTVF  156 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  156 (409)
                      ++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+...    ....+.+....  ....+.+..
T Consensus        91 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~  166 (546)
T PLN02330         91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL----GLPVIVLGEEKIEGAVNWKELL  166 (546)
T ss_pred             hHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc----CCcEEEecCCCCCCcccHHHHH
Confidence            999999999999999999999999999999999999999999998877666443    11122211110  000000000


Q ss_pred             ccc----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHH
Q 015313          157 DQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       157 ~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                      ...    .........++++++++|||||||.||+|.++|+++...+........  ....+..+..+|++|..++...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~  246 (546)
T PLN02330        167 EAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGIC  246 (546)
T ss_pred             hhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHH
Confidence            000    000122334678999999999999999999999999876654322111  22346899999999999987667


Q ss_pred             HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhc--cceEE
Q 015313          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK--QLRLM  308 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~--~lr~v  308 (409)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++....        ...+++  .+|.+
T Consensus       247 ~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~~~l~~i  308 (546)
T PLN02330        247 CATLRNKGKVVVMSRFELRTFLNA----------LITQEVSFAPIVPPIILNLVKNPIV--------EEFDLSKLKLQAI  308 (546)
T ss_pred             HHHhhcCCEEEEecccCHHHHHHH----------HHHcCCeeeecCCHHHHHHHhCccc--------cccccchheeeeE
Confidence            888999999999999999999988          7889999999999999999875221        111222  57999


Q ss_pred             EeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEee-CCCCCCCCc-c
Q 015313          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V  380 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~  380 (409)
                      ++||+++++++.+++.+.| ++++++.||+||++++......     .....+++|.|+|+++++|+| +++++++.| .
T Consensus       309 ~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~  388 (546)
T PLN02330        309 MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP  388 (546)
T ss_pred             EEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc
Confidence            9999999999999999998 8999999999999865443211     123456899999999999999 456778877 8


Q ss_pred             ceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          381 GEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       381 Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      |||+++|++++.||+++|+.+++.  .+|||
T Consensus       389 Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~  419 (546)
T PLN02330        389 GELCVRSQCVMQGYYNNKEETDRTIDEDGWL  419 (546)
T ss_pred             eEEEEecchhhhhhccCccchhhhccCCCce
Confidence            999999999999999999999887  47887

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.3e-48  Score=388.11  Aligned_cols=373  Identities=18%  Similarity=0.245  Sum_probs=289.7

Q ss_pred             HHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      .+.|.++++.+|+++|+++      ..+.+||+||.+++.++|+.|++                 +|+++||+|+++++|
T Consensus        56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  118 (629)
T PRK10524         56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-----------------LGVQRGDRVLIYMPM  118 (629)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            4567788888999999986      23689999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhcc---CCceeccCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (409)
                      +++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.......   ....+.+..
T Consensus       119 ~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  198 (629)
T PRK10524        119 IAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDR  198 (629)
T ss_pred             CHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999997632         23333332211   111222111


Q ss_pred             CCC-CC---C-Cccccc---c-c-hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCeE
Q 015313          146 VPN-VS---S-ETTVFD---Q-S-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQF  214 (409)
Q Consensus       146 ~~~-~~---~-~~~~~~---~-~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~  214 (409)
                      ... ..   . ......   . . .........++++++++|||||||.||+|.++|.+++.... .....+++.++|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~  278 (629)
T PRK10524        199 GLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETF  278 (629)
T ss_pred             CCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            000 00   0 000000   0 0 00011123568999999999999999999999998764443 34445678889999


Q ss_pred             EEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      ++..|+.|..++...++.+++.|+++++.++    .++..+++.          ++++++|+++++|++++.+.+.... 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-  347 (629)
T PRK10524        279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRI----------VEKYKVNRMFSAPTAIRVLKKQDPA-  347 (629)
T ss_pred             EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHH----------HHHcCceEEEeCHHHHHHHHhcCcc-
Confidence            9999999998877778999999999999874    457778887          7889999999999999988764110 


Q ss_pred             hHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccc-cC---CCCCCccccccccCCeEE
Q 015313          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PL---RGARKAGTVGNPLPGVQV  366 (409)
Q Consensus       291 ~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~-~~---~~~~~~~~~G~p~~~~~~  366 (409)
                           .....++++||.+++||+++++++.+++.+.+++++++.||+||++..+.. ..   ......+++|+|++++++
T Consensus       348 -----~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  422 (629)
T PRK10524        348 -----LLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNV  422 (629)
T ss_pred             -----cccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceE
Confidence                 112346789999999999999999999999999999999999999843322 11   123456789999999999


Q ss_pred             EEeeC-CCCCCCCc-cceEEEeCc---chhhhhcCCCcccchhh-----cccC
Q 015313          367 KIAED-ESGSDAAG-VGEICVKSP---SLFKEYWKLPKESRTLS-----SCLY  409 (409)
Q Consensus       367 ~ivd~-~~~~~~~~-~Gel~v~g~---~~~~gY~~~~~~t~~~~-----~g~~  409 (409)
                      +|+|+ +|++++.| .|||+++||   +++.|||++++.+.+.+     +|||
T Consensus       423 ~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (629)
T PRK10524        423 KLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVY  475 (629)
T ss_pred             EEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEE
Confidence            99998 89988887 899999998   57889999998887652     4676

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-48  Score=378.13  Aligned_cols=354  Identities=21%  Similarity=0.330  Sum_probs=289.3

Q ss_pred             HHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHH
Q 015313            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (409)
Q Consensus         8 ~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~   85 (409)
                      +.+++.+||++|+++  +++.+||.||++++.++|+.|.+.                 |+++|++|+++++|++++++++
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~-----------------g~~~~~~v~i~~~~~~~~~~~~   64 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRR-----------------GCVDGERLAVLARNSVWLVALH   64 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHHHHHH
Confidence            456778999999987  678999999999999999999984                 8999999999999999999999


Q ss_pred             HHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhcc
Q 015313           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (409)
Q Consensus        86 ~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (409)
                      +||+++|++++|+++..+.+++.+++++++++++++++......        .....+.......      .........
T Consensus        65 la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~~~~------~~~~~~~~~  130 (488)
T PRK09088         65 FACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------TDVEDLAAFIASA------DALEPADTP  130 (488)
T ss_pred             HHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------ccccchhhhhhhc------cccccccCC
Confidence            99999999999999999999999999999999999987543210        0000000000000      000000112


Q ss_pred             CCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC
Q 015313          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK  245 (409)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~  245 (409)
                      ....+++++++|||||||.||+|.++|+++...+............|++++.+|++|..+++..++.++..|+++++.+.
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~  210 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG  210 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            23467899999999999999999999999998887777777788899999999999999998778889999999999998


Q ss_pred             cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHH
Q 015313          246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~  325 (409)
                      +++...+..+.+        .++++|+++++|.+++.+.+...        .....++++|.+++||++++....+++.+
T Consensus       211 ~~~~~~~~~~~~--------~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gG~~~~~~~~~~~~~  274 (488)
T PRK09088        211 FEPKRTLGRLGD--------PALGITHYFCVPQMAQAFRAQPG--------FDAAALRHLTALFTGGAPHAAEDILGWLD  274 (488)
T ss_pred             CCHHHHHHHHHh--------hccCCcEEeeHHHHHHHHHhCcC--------cCccccccceEEEecCCCCCHHHHHHHHH
Confidence            888888877421        35899999999999998876421        12235678999999999999999888876


Q ss_pred             HhCCcccccccccccccccccc---CCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCccc
Q 015313          326 ITGHRLLERYGMTEFVMAISNP---LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKES  401 (409)
Q Consensus       326 ~~~~~v~~~YG~tE~g~~~~~~---~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t  401 (409)
                      . ++++++.||+||++++....   .....+.+++|.|.|+++++|+|+++++++.| .|||+++||+++.||+++++.|
T Consensus       275 ~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~  353 (488)
T PRK09088        275 D-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQAT  353 (488)
T ss_pred             h-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhh
Confidence            5 89999999999998654321   11123567899999999999999999888887 8999999999999999999999


Q ss_pred             chhh--cccC
Q 015313          402 RTLS--SCLY  409 (409)
Q Consensus       402 ~~~~--~g~~  409 (409)
                      ++.+  +|||
T Consensus       354 ~~~~~~~g~~  363 (488)
T PRK09088        354 ARAFTGDGWF  363 (488)
T ss_pred             hhhhcCCCCe
Confidence            8874  7897

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-47  Score=381.49  Aligned_cols=373  Identities=23%  Similarity=0.376  Sum_probs=297.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++|+++|+++.+..+||.||+++++++|.+|.+.                 |+++||+|+++++|++++
T Consensus        24 ~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~-----------------gi~~gd~V~i~~~n~~~~   86 (557)
T PRK07059         24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSR-----------------GLAKGARVAIMMPNVLQY   86 (557)
T ss_pred             CHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCHHH
Confidence            588999999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC------------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV------------  149 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  149 (409)
                      +++++||+++|++++|+++..+.+++.++++.++++++++++.....+....................            
T Consensus        87 ~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (557)
T PRK07059         87 PVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV  166 (557)
T ss_pred             HHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccc
Confidence            99999999999999999999999999999999999999999887666655433222111111100000            


Q ss_pred             ------------CCCccccc-----cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc----c
Q 015313          150 ------------SSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----Y  208 (409)
Q Consensus       150 ------------~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~  208 (409)
                                  ........     ...........++++++++|||||||.||+|.++|.+++..+......+.    .
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~  246 (557)
T PRK07059        167 RRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK  246 (557)
T ss_pred             ccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence                        00000000     00001122345789999999999999999999999999876544322211    1


Q ss_pred             ---CCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHH
Q 015313          209 ---TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI  284 (409)
Q Consensus       209 ---~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~  284 (409)
                         ...+.+++.+|++|.+++....+.++..|++.++.+. .++..+++.          ++++++|.+.++|.++..+.
T Consensus       247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~  316 (557)
T PRK07059        247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKE----------LKKYQVHIFPAVNTLYNALL  316 (557)
T ss_pred             cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHH----------HHHhCCeeeecCHHHHHHHH
Confidence               1245788899999999876667788888888777664 467777777          78899999999999999988


Q ss_pred             HhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCC-CCCCccccccccCC
Q 015313          285 QGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG  363 (409)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~~~  363 (409)
                      +...        ....+++++|.++.||+++++.+.++|.+.+++++++.||+||++.++..... .....+++|.|+++
T Consensus       317 ~~~~--------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g  388 (557)
T PRK07059        317 NNPD--------FDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPS  388 (557)
T ss_pred             cCcC--------cCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCC
Confidence            7522        12235678999999999999999999999999999999999999876553332 23446789999999


Q ss_pred             eEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          364 VQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       364 ~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      ++++|+|+++++++.| .|||+++|++++.|||+++++|++.  .+|||
T Consensus       389 ~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~  437 (557)
T PRK07059        389 TEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFF  437 (557)
T ss_pred             cEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCce
Confidence            9999999999988888 7999999999999999999999887  47997

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.5e-47  Score=377.35  Aligned_cols=372  Identities=23%  Similarity=0.329  Sum_probs=298.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      ++.+.+++.++++||++|+++..     +.+||+||+++++++|..|.+.                 |+++||+|+++++
T Consensus         8 ~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~-----------------g~~~~~~v~i~~~   70 (517)
T PRK08008          8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSL-----------------GIRKGDKVALHLD   70 (517)
T ss_pred             cHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            57889999999999999998754     7899999999999999999984                 8999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--CceeccCCCCC--CCCC
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN--VSSE  152 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~  152 (409)
                      |+++++++++||+++|++++++++..+.+++.+++++++++.++++.+..+.+.++.....  .....+.....  ....
T Consensus        71 n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (517)
T PRK08008         71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGV  150 (517)
T ss_pred             CCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccc
Confidence            9999999999999999999999999999999999999999999999988777666543322  11111111100  0000


Q ss_pred             ccccc---c--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 015313          153 TTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (409)
Q Consensus       153 ~~~~~---~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  227 (409)
                      .....   .  ..........++++++++|||||||.||+|.++|+++............+..++++++.+|++|..++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (517)
T PRK08008        151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC  230 (517)
T ss_pred             cCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence            00000   0  000112233568999999999999999999999999986554444444577889999999999998887


Q ss_pred             HHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceE
Q 015313          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (409)
Q Consensus       228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~  307 (409)
                      ..++.++..|+++++.+.+++..+++.          ++++++|.+.++|.+++.++.....        .....+.++.
T Consensus       231 ~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~l~~  292 (517)
T PRK08008        231 TAAMAAFSAGATFVLLEKYSARAFWGQ----------VCKYRATITECIPMMIRTLMVQPPS--------ANDRQHCLRE  292 (517)
T ss_pred             HHHHHHHhcCcEEEEccccCHHHHHHH----------HHHcCCcEEechHHHHHHHHhCCCc--------ccccccccee
Confidence            778899999999999999999999988          7889999999999999888764211        1112356787


Q ss_pred             EEeeCCCCCHHHHHHHHHHhCCccccccccccccccccc-cCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEE
Q 015313          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICV  385 (409)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v  385 (409)
                      +..++ +++++....|.+.+++++++.||+||+++.+.. .........++|.|+++++++|+|+++++++.| .|||++
T Consensus       293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v  371 (517)
T PRK08008        293 VMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICI  371 (517)
T ss_pred             eEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEE
Confidence            77754 789999999999999999999999999865442 233334567899999999999999999998888 899999


Q ss_pred             eC---cchhhhhcCCCcccchh--hcccC
Q 015313          386 KS---PSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       386 ~g---~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      +|   ++++.|||++|+.|++.  .||||
T Consensus       372 ~g~~~~~~~~gy~~~~~~~~~~~~~~g~~  400 (517)
T PRK08008        372 KGVPGKTIFKEYYLDPKATAKVLEADGWL  400 (517)
T ss_pred             eCCCCcchhhhHhCChHHHhhcccCCCCe
Confidence            98   68999999999999887  47897

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.6e-48  Score=419.59  Aligned_cols=358  Identities=19%  Similarity=0.293  Sum_probs=299.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+||++|+++.++.+||+||.++++++|+.|.+.                 |+++|++|+|++++++++
T Consensus       459 ~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~g~~V~l~~~~~~~~  521 (1296)
T PRK10252        459 TLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRER-----------------GVKPGDSVAVALPRSVFL  521 (1296)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            577899999999999999999999999999999999999999995                 889999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++.+....+....   .......   ....      .....
T Consensus       522 i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~---~~~~------~~~~~  589 (1296)
T PRK10252        522 TLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVP---DLTSLCY---NAPL------APQGA  589 (1296)
T ss_pred             HHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCC---Cceeeec---cccc------ccccC
Confidence            9999999999999999999999999999999999999999987654432210   0000000   0000      00000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||.++|+++.+.+.+....++++++|++++..|++|..+++ .++.+|..|++++
T Consensus       590 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  668 (1296)
T PRK10252        590 APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLV  668 (1296)
T ss_pred             CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEE
Confidence            111223578999999999999999999999999999999999999999999999999999998875 5889999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+++.          ++++++|++.++|+++..+++.....      .....++++|.+++||++++++
T Consensus       669 ~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~~~------~~~~~~~~lr~i~~gGe~l~~~  732 (1296)
T PRK10252        669 MAEPEAHRDPLAMQQF----------FAEYGVTTTHFVPSMLAAFVASLTPE------GARQSCASLRQVFCSGEALPAD  732 (1296)
T ss_pred             ECChhccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhhhccc------cccccCCCccEEEEecCCCCHH
Confidence            9873   467778777          78899999999999999887653211      1112457899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccccCCC-------CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          319 VMQQWETITGHRLLERYGMTEFVMAISNPLRG-------ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-------~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      +.++|.+.+++++++.||+||++..++.....       .....++|+|+++++++|+|+++++++.| .|||+++|+++
T Consensus       733 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~  812 (1296)
T PRK10252        733 LCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQL  812 (1296)
T ss_pred             HHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccccc
Confidence            99999998899999999999998655432211       22345799999999999999999999998 89999999999


Q ss_pred             hhhhcCCCcccchhh
Q 015313          391 FKEYWKLPKESRTLS  405 (409)
Q Consensus       391 ~~gY~~~~~~t~~~~  405 (409)
                      ++||+++|++|++.|
T Consensus       813 ~~GY~~~~~~t~~~f  827 (1296)
T PRK10252        813 AQGYLGRPDLTASRF  827 (1296)
T ss_pred             chhhCCCcccchhhc
Confidence            999999999999874

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-48  Score=448.36  Aligned_cols=356  Identities=21%  Similarity=0.315  Sum_probs=301.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|++++++++||+||+++++++|+.|.+.                 |+++|++|+|+++|++++
T Consensus      3096 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~ 3158 (3956)
T PRK12467       3096 LVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAI-----------------GVGPDVLVGVAVERSVEM 3158 (3956)
T ss_pred             cHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEeCCCHHH
Confidence            578899999999999999999999999999999999999999995                 999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++....+.+...   .......+.....       ......
T Consensus      3159 vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~ 3228 (3956)
T PRK12467       3159 IVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---AGDTALTLDRLDL-------NGYSEN 3228 (3956)
T ss_pred             HHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---cCCceeeecchhh-------cccCCC
Confidence            999999999999999999999999999999999999999998765433211   1111111111000       000111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||+++|+++.+.+.+....++++++|+++...|++|..+.+ .++.+|..|++++
T Consensus      3229 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~ 3307 (3956)
T PRK12467       3229 NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGCLV 3307 (3956)
T ss_pred             CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence            112334678999999999999999999999999999999999999999999999999999998874 6899999999999


Q ss_pred             EccC--cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +.+.  +++..+++.          +.++++|++.++|++++.+++..          ...++++||.+++||+++++++
T Consensus      3308 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~----------~~~~~~~lr~~~~gGe~~~~~~ 3367 (3956)
T PRK12467       3308 VRDNDLWDPEELWQA----------IHAHRISIACFPPAYLQQFAEDA----------GGADCASLDIYVFGGEAVPPAA 3367 (3956)
T ss_pred             ECCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhcc----------cccCCCCceEEEEecCCCCHHH
Confidence            9986  678888888          78899999999999999887641          2236788999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccccCC-C----CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh
Q 015313          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR-G----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-~----~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~  392 (409)
                      .++|.+.+ ++.++|.||+||+++.++.... .    .....++|+|+++++++|+|+++++++.| +|||+|+|+++++
T Consensus      3368 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467       3368 FEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLAR 3447 (3956)
T ss_pred             HHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhh
Confidence            99999887 6789999999999865542211 1    12346799999999999999999999998 8999999999999


Q ss_pred             hhcCCCcccchhh
Q 015313          393 EYWKLPKESRTLS  405 (409)
Q Consensus       393 gY~~~~~~t~~~~  405 (409)
                      ||||+|++|++.|
T Consensus      3448 GY~~~~~~T~~~F 3460 (3956)
T PRK12467       3448 GYHQRPSLTAERF 3460 (3956)
T ss_pred             hccCCcccchhhc
Confidence            9999999999984

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-47  Score=380.29  Aligned_cols=374  Identities=22%  Similarity=0.308  Sum_probs=300.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.++++.+||++|+.+.++.+||.||.+++.++|.+|.+.                 |+++|++|+++++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~-----------------g~~~g~~V~i~~~n~~~   95 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQR-----------------GVGAGDRVAVFLPNCPQ   95 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCcH
Confidence            3678999999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC-CC------Cc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-SS------ET  153 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~  153 (409)
                      ++++++||+++|++++|+++..+.+++.+++++++++++++++...+.+...........+.+...... ..      ..
T Consensus        96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  175 (567)
T PRK06178         96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPD  175 (567)
T ss_pred             HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccc
Confidence            999999999999999999999999999999999999999999988777666544333222211110000 00      00


Q ss_pred             ----------ccccc-------chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh-hcccCCCCeEE
Q 015313          154 ----------TVFDQ-------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFL  215 (409)
Q Consensus       154 ----------~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~d~~l  215 (409)
                                ...+.       ..........++++++++|||||||.||+|.+||+++...+..... ......+|+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l  255 (567)
T PRK06178        176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFL  255 (567)
T ss_pred             ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEE
Confidence                      00000       0000112245689999999999999999999999999876655433 35677889999


Q ss_pred             EecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHH
Q 015313          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ  295 (409)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~  295 (409)
                      +.+|++|..|+...++.++..|+++++.+++++..++..          ++++++|.+.++|..+..+++...       
T Consensus       256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~l~~~~~-------  318 (567)
T PRK06178        256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA----------VERYRVTRTVMLVDNAVELMDHPR-------  318 (567)
T ss_pred             EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCC-------
Confidence            999999999987778889999999999999999999988          788999999999999988876421       


Q ss_pred             HHhhhhhccceEEEee--CCCCCHHHHHHHHHHhCCcccc-ccccccccccccccC---CC----CCCccccccccCCeE
Q 015313          296 AASASAAKQLRLMMCG--SSALPLPVMQQWETITGHRLLE-RYGMTEFVMAISNPL---RG----ARKAGTVGNPLPGVQ  365 (409)
Q Consensus       296 ~~~~~~~~~lr~v~~g--G~~~~~~~~~~~~~~~~~~v~~-~YG~tE~g~~~~~~~---~~----~~~~~~~G~p~~~~~  365 (409)
                       ....++++++.+..+  ++.+++++.+.+++.+|..++. .||+||++.......   ..    ...++++|+|+||++
T Consensus       319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~  397 (567)
T PRK06178        319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTE  397 (567)
T ss_pred             -CCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcE
Confidence             122345678876544  5899999999999999887775 799999875433211   11    234567999999999


Q ss_pred             EEEee-CCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          366 VKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       366 ~~ivd-~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++|+| +++++++.| +|||+++|++++.|||++++.+++. .||||
T Consensus       398 v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~  444 (567)
T PRK06178        398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWL  444 (567)
T ss_pred             EEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCce
Confidence            99999 557888887 8999999999999999999999887 68997

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.7e-47  Score=378.03  Aligned_cols=373  Identities=18%  Similarity=0.270  Sum_probs=297.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++  ||++|+++.++.+||+||+++++++|..|.+.                 |+++|++|+++++|++++
T Consensus        26 ~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-----------------g~~~g~~V~v~~~n~~~~   86 (536)
T PRK10946         26 PLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQ-----------------GIKPGDTALVQLGNVAEF   86 (536)
T ss_pred             cHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCChHHH
Confidence            56788888887  99999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-CceeccCCCCCCCCCccc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETTV  155 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  155 (409)
                      +++++||+++|++++++.+.....++.++++.+++++++++.+..     .....+..... ..................
T Consensus        87 ~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  166 (536)
T PRK10946         87 YITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDA  166 (536)
T ss_pred             HHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHH
Confidence            999999999999988877777788899999999999999986421     11122222111 111111111000000000


Q ss_pred             ccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHHH
Q 015313          156 FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAP  233 (409)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~~  233 (409)
                      ... ..........++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|.+++.. .++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~  246 (536)
T PRK10946        167 INHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGV  246 (536)
T ss_pred             hhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHH
Confidence            000 0011122345689999999999999999999999999999988888888999999999999999888753 46788


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|+++++.+.+++..++..          ++++++|++.++|.++..+++....      ......++++|.+++||+
T Consensus       247 l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~  310 (536)
T PRK10946        247 FLAGGTVVLAPDPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQAIAE------GGSRAQLASLKLLQVGGA  310 (536)
T ss_pred             hhcCcEEEECCCCCHHHHHHH----------HHHhCCcEEEeChHHHHHHHhhhcc------cCccccccceeEEEECCC
Confidence            999999999988888888887          7889999999999999999875321      112245678999999999


Q ss_pred             CCCHHHHHHHHHHhCCcccccccccccccccccc-CCCCCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~~~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      ++++.+.+++.+.+++++++.||+||++...... ........++|+|+ |++.++|+|+++++++.| .|||+++|+++
T Consensus       311 ~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~  390 (536)
T PRK10946        311 RLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYT  390 (536)
T ss_pred             CCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCcc
Confidence            9999999999999999999999999976443321 11233467899998 889999999999998888 89999999999


Q ss_pred             hhhhcCCCcccchhh--cccC
Q 015313          391 FKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       391 ~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +.|||++|+.|++.+  ||||
T Consensus       391 ~~GY~~~~~~t~~~~~~d~~~  411 (536)
T PRK10946        391 FRGYYKSPQHNASAFDANGFY  411 (536)
T ss_pred             chhhcCCcccchhhcccCCce
Confidence            999999999999884  7897

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-47  Score=372.73  Aligned_cols=338  Identities=33%  Similarity=0.548  Sum_probs=285.7

Q ss_pred             cccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHh
Q 015313           11 GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWF   90 (409)
Q Consensus        11 ~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~   90 (409)
                      +...++++|+.++++++||+||.++++++|..|..                      +|+|+++++|+++++++++||++
T Consensus        10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~----------------------~~~V~l~~~~~~~~~~~~la~~~   67 (471)
T PRK07787         10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVAG----------------------ARRVAVLATPTLATVLAVVGALI   67 (471)
T ss_pred             hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhcc----------------------CCEEEEECCCCHHHHHHHHHHHh
Confidence            34468999999999999999999999999999964                      69999999999999999999999


Q ss_pred             hCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCC
Q 015313           91 SGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE  170 (409)
Q Consensus        91 ~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (409)
                      +|++++|+++..+.+++.++++++++++++++++...      ....  ...+..  ....   .      .......++
T Consensus        68 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~--~~~~~~--~~~~---~------~~~~~~~~~  128 (471)
T PRK07787         68 AGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP------AGLP--HVPVRL--HARS---W------HRYPEPDPD  128 (471)
T ss_pred             cCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc------cccc--ceeeec--cccc---c------ccCCCCCCC
Confidence            9999999999999999999999999999999863110      0000  000000  0000   0      011123568


Q ss_pred             CcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHH
Q 015313          171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG  250 (409)
Q Consensus       171 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~  250 (409)
                      ++++++|||||||.||+|.++|+++...+......++...+|++++.+|++|..|++..++.++..|+++++.+.+++..
T Consensus       129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  208 (471)
T PRK07787        129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA  208 (471)
T ss_pred             ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence            99999999999999999999999999998888888888899999999999999999888999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCc
Q 015313          251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR  330 (409)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~  330 (409)
                      +++.          ++ +++|.+.++|.++..+.+...         ....++++|.+++||+++++.+.+++.+.++.+
T Consensus       209 ~~~~----------i~-~~~t~~~~~P~~~~~l~~~~~---------~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~  268 (471)
T PRK07787        209 YAQA----------LS-EGGTLYFGVPTVWSRIAADPE---------AARALRGARLLVSGSAALPVPVFDRLAALTGHR  268 (471)
T ss_pred             HHHH----------Hh-hCceEEEcchHHHHHHHhCcc---------ccccccceeEEEECCCCCCHHHHHHHHHHcCCC
Confidence            9888          77 899999999999999886421         123567899999999999999999999999999


Q ss_pred             cccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCC-Cc--cceEEEeCcchhhhhcCCCcccchhh--
Q 015313          331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDA-AG--VGEICVKSPSLFKEYWKLPKESRTLS--  405 (409)
Q Consensus       331 v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~-~~--~Gel~v~g~~~~~gY~~~~~~t~~~~--  405 (409)
                      +++.||+||+++............+++|+|+++++++|+|+++++++ .+  +|||+++|++++.|||++|+.|++.+  
T Consensus       269 ~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~  348 (471)
T PRK07787        269 PVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTA  348 (471)
T ss_pred             eecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccC
Confidence            99999999998765544444455678999999999999999988876 23  79999999999999999999998884  


Q ss_pred             cccC
Q 015313          406 SCLY  409 (409)
Q Consensus       406 ~g~~  409 (409)
                      +|||
T Consensus       349 ~~~~  352 (471)
T PRK07787        349 DGWF  352 (471)
T ss_pred             CCce
Confidence            7887

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-47  Score=376.08  Aligned_cols=360  Identities=20%  Similarity=0.278  Sum_probs=292.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +|+.+.|.+.+..+||++|++++++.+||+||.++++++|+.|.+.                 |+++||+|+++++|+++
T Consensus        35 ~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~-----------------gi~~g~~V~i~~~~~~~   97 (516)
T PRK13383         35 TNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRD-----------------GVAPGRAVGVMCRNGRG   97 (516)
T ss_pred             CcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEECCCCHH
Confidence            3678889999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+.+|++++|+++.++.+++.++++.++++.++++++....+.....    ....+.....     .. ..  
T Consensus        98 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~-----~~-~~--  165 (516)
T PRK13383         98 FVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD----AVAVIDPATA-----GA-EE--  165 (516)
T ss_pred             HHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc----ceEEeccchh-----hh-hc--
Confidence            999999999999999999999999999999999999999999877665544321    1111111000     00 00  


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHH--HHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID--AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~--~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                       ........++.++++|||||||.||+|.++|....  ..........++..+|++++.+|++|.+++.. ++.++..|+
T Consensus       166 -~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~  243 (516)
T PRK13383        166 -SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGG  243 (516)
T ss_pred             -CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH-HHHHHhcCC
Confidence             00011224567899999999999999999997432  11222334456788999999999999999864 777899999


Q ss_pred             EEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      ++++...+++..+++.          ++++++|.+.++|.++..+.+..+..      .....++++|.+++||++++++
T Consensus       244 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~gG~~l~~~  307 (516)
T PRK13383        244 TVLTHRHFDAEAALAQ----------ASLHRADAFTAVPVVLARILELPPRV------RARNPLPQLRVVMSSGDRLDPT  307 (516)
T ss_pred             EEEECCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHhccccc------cccCCCCceEEEEECCCCCCHH
Confidence            9999998999999888          77799999999999999987642211      0123467899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcC
Q 015313          319 VMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK  396 (409)
Q Consensus       319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~  396 (409)
                      +.++|.+.+++++++.||+||++....... ......+++|+|+|+++++|+|+++++++.| .|||+++|+.++.||++
T Consensus       308 ~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~  387 (516)
T PRK13383        308 LGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD  387 (516)
T ss_pred             HHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccC
Confidence            999999999999999999999986554332 2234567899999999999999999988887 89999999999999999


Q ss_pred             CCcccchhhcccC
Q 015313          397 LPKESRTLSSCLY  409 (409)
Q Consensus       397 ~~~~t~~~~~g~~  409 (409)
                      ++.  ....||||
T Consensus       388 ~~~--~~~~~g~~  398 (516)
T PRK13383        388 GGG--KAVVDGMT  398 (516)
T ss_pred             Cch--hheecCce
Confidence            864  33478887

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-47  Score=378.19  Aligned_cols=373  Identities=25%  Similarity=0.331  Sum_probs=300.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|.+.++++|+++|+++  .++.+||.||.++++++|+.|.+.                 |+++|++|+++++|++
T Consensus        19 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~~   81 (558)
T PRK12583         19 TIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLAL-----------------GVQPGDRVGIWAPNCA   81 (558)
T ss_pred             cHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCh
Confidence            678999999999999999987  457899999999999999999984                 8999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhcc-------------CC--c
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKS-------------GA--K  139 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~-------------~~--~  139 (409)
                      +++++++||+++|++++|+++..+.+++.++++++++++++++...     ...+.......             ..  .
T Consensus        82 ~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (558)
T PRK12583         82 EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG  161 (558)
T ss_pred             HHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence            9999999999999999999999999999999999999999997642     22222211110             00  0


Q ss_pred             eeccCCCC--CCCCCcccccc-------chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCC
Q 015313          140 FSLIPPVP--NVSSETTVFDQ-------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS  210 (409)
Q Consensus       140 ~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~  210 (409)
                      ........  ....+......       ..........++++++++|||||||.||+|.++|+++...+......+++..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  241 (558)
T PRK12583        162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE  241 (558)
T ss_pred             EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence            00000000  00000000000       0000112235688999999999999999999999999998888888888999


Q ss_pred             CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (409)
Q Consensus       211 ~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  289 (409)
                      +|++++..|++|..|.+..++.++..|+++++.. .+++..+++.          ++++++|++.++|+++..++.... 
T Consensus       242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~-  310 (558)
T PRK12583        242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA----------VEEERCTALYGVPTMFIAELDHPQ-  310 (558)
T ss_pred             CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcccc-
Confidence            9999999999999999888999999999999654 5778888887          788999999999999987776421 


Q ss_pred             hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC-CccccccccccccccccccCC---CCCCccccccccCCeE
Q 015313          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQ  365 (409)
Q Consensus       290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~---~~~~~~~~G~p~~~~~  365 (409)
                             ....+++++|.+++||+++++++.+++.+.++ ..+++.||+||++.+......   ......++|+|++++.
T Consensus       311 -------~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~  383 (558)
T PRK12583        311 -------RGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLE  383 (558)
T ss_pred             -------ccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCe
Confidence                   12245789999999999999999999999886 479999999999976653321   1235678999999999


Q ss_pred             EEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          366 VKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       366 ~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      ++|+|+++++++.| .|||+++|++++.||+++++.+++.  .+|||
T Consensus       384 ~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~  430 (558)
T PRK12583        384 VKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWM  430 (558)
T ss_pred             EEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCe
Confidence            99999999888887 8999999999999999999999886  57887

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-47  Score=377.99  Aligned_cols=358  Identities=21%  Similarity=0.310  Sum_probs=274.9

Q ss_pred             Ch-HHHHHHHhcccCCCeeEEEeCC----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            1 ME-VFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         1 ~~-~~~~l~~~~~~~~~~~a~~~~~----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      || +.+.|.+.++++|+++|+++.+    +++||+||.++++++|+.|.+                 .  ++||+|+|++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-----------------~--~~g~~V~l~~   61 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-----------------R--DRPGAVGLVG   61 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-----------------c--CCCCeEEEEc
Confidence            78 8889999999999999999876    789999999999999999987                 3  7899999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCC-------CChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN  148 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~-------~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (409)
                      +|+++++++++||+++|+++++.+..       ...+++.++++.++++++|++.+..+.+.......     .+.....
T Consensus        62 ~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~  136 (525)
T PRK05851         62 EPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSV-----TVHDLAT  136 (525)
T ss_pred             CCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhccc-----ccccccc
Confidence            99999999999999999986544311       12244556789999999999987665544322111     0100000


Q ss_pred             CCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccC-CCCeEEEecCchhHHHHH
Q 015313          149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT-SADQFLHCLPLHHVHGLF  227 (409)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~~~~g~~  227 (409)
                      ..      ............++++++|+|||||||.||+|.++|+++...+......++.. .+|++++.+|++|.+++.
T Consensus       137 ~~------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  210 (525)
T PRK05851        137 AA------HTNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA  210 (525)
T ss_pred             cc------cccccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence            00      00000011123568999999999999999999999999999998888888888 899999999999999986


Q ss_pred             HHHHHHHhcCCEEEEccC--c--chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhc
Q 015313          228 NALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK  303 (409)
Q Consensus       228 ~~~~~~l~~G~~i~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~  303 (409)
                       .++.++..|+++++.+.  +  ++..+++.          ++++++|.+...|.++..+.+...       .....+++
T Consensus       211 -~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~p~~~~~~l~~~~~-------~~~~~~l~  272 (525)
T PRK05851        211 -FLLTAALAGAPLWLAPTTAFSASPFRWLSW----------LSDSRATLTAAPNFAYNLIGKYAR-------RVSDVDLG  272 (525)
T ss_pred             -HHHHHHHcCCeEEEcCHHHHHHCHHHHHHH----------HHHhCCeEEeCCcHHHHHHHHhhc-------cccCCCHH
Confidence             47889999999999763  3  45667777          777999988655544444433211       11234578


Q ss_pred             cceEEEeeCCCCCHHHHHHHHHH---hCC---ccccccccccccccccccCC---------------CCCCccccccccC
Q 015313          304 QLRLMMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLR---------------GARKAGTVGNPLP  362 (409)
Q Consensus       304 ~lr~v~~gG~~~~~~~~~~~~~~---~~~---~v~~~YG~tE~g~~~~~~~~---------------~~~~~~~~G~p~~  362 (409)
                      +||.+++||+++++++.++|.+.   +|.   ++++.||+||++..+.....               .....+++|+|+|
T Consensus       273 ~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~  352 (525)
T PRK05851        273 ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP  352 (525)
T ss_pred             HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCC
Confidence            89999999999999999999875   354   58999999999765443211               1123468999999


Q ss_pred             CeEEEEeeCCCC-CCCCc-cceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          363 GVQVKIAEDESG-SDAAG-VGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       363 ~~~~~ivd~~~~-~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      +++++|+|+++. +++.| .|||+++|++++.|||++|+.+   .+|||
T Consensus       353 g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~---~~~~~  398 (525)
T PRK05851        353 GMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID---PDDWF  398 (525)
T ss_pred             CcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC---CCCce
Confidence            999999998874 46666 8999999999999999999865   36887

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=5.9e-48  Score=419.48  Aligned_cols=365  Identities=17%  Similarity=0.195  Sum_probs=288.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFKAAYKKGSMARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      ++.+.|.++++.+||++|+++         ..+++||+||.++++++|++|.+.                 |+++|++|+
T Consensus       237 ~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~  299 (1389)
T TIGR03443       237 AIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKT-----------------GIKRGDVVM  299 (1389)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEE
Confidence            467889999999999999985         357899999999999999999995                 899999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH---HHHHHHhhcc-----CCceeccC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---EVLQNVASKS-----GAKFSLIP  144 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~-----~~~~~~~~  144 (409)
                      |+++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+..   ..+.......     ......+.
T Consensus       300 i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (1389)
T TIGR03443       300 IYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQ  379 (1389)
T ss_pred             EEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEec
Confidence            999999999999999999999999999999999999999999999999876421   1111111100     00000110


Q ss_pred             CCCCCC----CCc--ccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeE
Q 015313          145 PVPNVS----SET--TVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF  214 (409)
Q Consensus       145 ~~~~~~----~~~--~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~  214 (409)
                      ......    ...  .....    ..........++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~  459 (1389)
T TIGR03443       380 DDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF  459 (1389)
T ss_pred             ccccccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence            000000    000  00000    00001122357899999999999999999999999999999988888899999999


Q ss_pred             EEecCchhHHHHHHHHHHHHhcCCEEEEccCc---chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhh
Q 015313          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (409)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~  291 (409)
                      +...|++|..+++ .++.+|+.|+++++.+..   ++..+++.          ++++++|+++++|++++.+...     
T Consensus       460 ~~~~~~~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----  523 (1389)
T TIGR03443       460 TMLSGIAHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEW----------MAKYGATVTHLTPAMGQLLSAQ-----  523 (1389)
T ss_pred             EEecCceecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhc-----
Confidence            9999999988774 689999999999998753   46677776          7889999999999999888653     


Q ss_pred             HHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccC--CC---------CCCcccccc
Q 015313          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RG---------ARKAGTVGN  359 (409)
Q Consensus       292 ~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~--~~---------~~~~~~~G~  359 (409)
                            ....+++||.+++||+++++...+++.+.. ++++++.||+||++..+....  ..         .....++|+
T Consensus       524 ------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  597 (1389)
T TIGR03443       524 ------ATTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGK  597 (1389)
T ss_pred             ------ccccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCC
Confidence                  123477899999999999999999988876 789999999999986544211  00         112457899


Q ss_pred             ccCCeEEEEeeCCC--CCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          360 PLPGVQVKIAEDES--GSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       360 p~~~~~~~ivd~~~--~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                      |+++++++|+|+++  ++++.| +|||+|+||++++||||+|++|++.|
T Consensus       598 ~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f  646 (1389)
T TIGR03443       598 GMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKF  646 (1389)
T ss_pred             ccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhc
Confidence            99999999999764  567778 89999999999999999999999875

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.6e-47  Score=377.66  Aligned_cols=369  Identities=18%  Similarity=0.258  Sum_probs=282.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+||++|+++.+.++||+||+++++++|+.|.+                 +|+++||+|+|+++|++++
T Consensus        15 ~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~Gl~~gd~Vai~~~n~~e~   77 (579)
T PLN03102         15 TPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLIS-----------------LNITKNDVVSVLAPNTPAM   77 (579)
T ss_pred             cHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHH
Confidence            46788999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-------CceeccCCCCCCCC---
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-------AKFSLIPPVPNVSS---  151 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---  151 (409)
                      ++++|||+++|++++|+++..+.+++.++++.++++++|++++..+.+..+.....       ...+.+........   
T Consensus        78 ~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (579)
T PLN03102         78 YEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS  157 (579)
T ss_pred             HHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcc
Confidence            99999999999999999999999999999999999999999887766665433221       12222211110000   


Q ss_pred             -Cccccc---cchh------hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCch
Q 015313          152 -ETTVFD---QSQA------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (409)
Q Consensus       152 -~~~~~~---~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (409)
                       ......   ....      .......++++++|+|||||||.||+|.++|+++............+...+++++.+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  237 (579)
T PLN03102        158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF  237 (579)
T ss_pred             cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChh
Confidence             000000   0000      000123468999999999999999999999999765444444445566778999999999


Q ss_pred             hHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhh
Q 015313          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (409)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  301 (409)
                      |..++.. .+.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+....        ....
T Consensus       238 h~~g~~~-~~~~~~~g~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~  298 (579)
T PLN03102        238 HCNGWTF-TWGTAARGGTSVCMRHVTAPEIYKN----------IEMHNVTHMCCVPTVFNILLKGNSL--------DLSP  298 (579)
T ss_pred             hhcchhH-HHHHHHhcCcEEeeccCChHHHHHH----------HHHcCCeEEEeChHHHHHHHhCccc--------ccCC
Confidence            9998854 6678889999999988888888888          7889999999999999999875221        1123


Q ss_pred             hccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC--------------CCCccccccccCCeEEE
Q 015313          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--------------ARKAGTVGNPLPGVQVK  367 (409)
Q Consensus       302 ~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~--------------~~~~~~~G~p~~~~~~~  367 (409)
                      .++++.+++||+++++.+.+++.+ +|+++++.||+||+++.+......              ....+..+.+++  .++
T Consensus       299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~  375 (579)
T PLN03102        299 RSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVD  375 (579)
T ss_pred             cccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceE
Confidence            456788999999999999998865 599999999999998644321100              011233333444  456


Q ss_pred             EeeCC-CCCCCC--c-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          368 IAEDE-SGSDAA--G-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       368 ivd~~-~~~~~~--~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++|.+ +++++.  + .|||+|+||++++|||++|+.|++. .+|||
T Consensus       376 i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~  422 (579)
T PLN03102        376 VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWL  422 (579)
T ss_pred             EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCce
Confidence            66644 455543  3 6999999999999999999999988 58997

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=3.9e-47  Score=377.79  Aligned_cols=374  Identities=23%  Similarity=0.359  Sum_probs=296.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+|+++|+++.++.+||+||.+++.++|+.|.+.                +|+++|++|+++++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   89 (560)
T PRK08751         26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGE----------------LQLKKGDRVALMMPNCLQY   89 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHHH
Confidence            567899999999999999999999999999999999999999732                4999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC------------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV------------  149 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  149 (409)
                      +++++||+++|++++|++|.++.+++.+++++++++++++++.....+....................            
T Consensus        90 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (560)
T PRK08751         90 PIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFV  169 (560)
T ss_pred             HHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhh
Confidence            99999999999999999999999999999999999999999877666555433332221111000000            


Q ss_pred             --------CC-----Cccccc-----cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc----
Q 015313          150 --------SS-----ETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----  207 (409)
Q Consensus       150 --------~~-----~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----  207 (409)
                              ..     .....+     ...........++++++++|||||||.||+|.++|.++...+......+.    
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  249 (560)
T PRK08751        170 VKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK  249 (560)
T ss_pred             hhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence                    00     000000     00001112345688999999999999999999999999887776655443    


Q ss_pred             cCC-CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHH
Q 015313          208 YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (409)
Q Consensus       208 ~~~-~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~  285 (409)
                      ... ++++++.+|++|..++......++..|++.++.. .+++..++..          ++++++|++.++|.++..+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~  319 (560)
T PRK08751        250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKE----------LKKTRFTAFTGVNTLFNGLLN  319 (560)
T ss_pred             cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHH----------HHhcceeEecChHHHHHHHHc
Confidence            233 3577888999999998655666677777766554 5677888777          888999999999999999887


Q ss_pred             hhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCe
Q 015313          286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGV  364 (409)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~  364 (409)
                      ...        ....+++++|.+++||+++++++.+.|.+.+++++++.||+||++..++... ......+++|.|.+++
T Consensus       320 ~~~--------~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~  391 (560)
T PRK08751        320 TPG--------FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPST  391 (560)
T ss_pred             CcC--------cCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCc
Confidence            421        1223567899999999999999999999988999999999999986654332 2234567899999999


Q ss_pred             EEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          365 QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       365 ~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++|+|++++.++.+ .|||+++|+.++.|||++|++|++.+  +|||
T Consensus       392 ~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~  439 (560)
T PRK08751        392 DACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWL  439 (560)
T ss_pred             eEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCc
Confidence            999999999988887 89999999999999999999998874  6887

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-47  Score=377.80  Aligned_cols=373  Identities=26%  Similarity=0.417  Sum_probs=294.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.+..+++.+|+++|++++++.+||+||++++.++|..|.+.                 |+++||+|+++++|++++
T Consensus        25 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~-----------------gv~~gd~V~i~~~~~~~~   87 (563)
T PRK06710         25 PLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKL-----------------GVEKGDRVAIMLPNCPQA   87 (563)
T ss_pred             cHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChHH
Confidence            577889999999999999999999999999999999999999884                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC---CC-------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV---SS-------  151 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------  151 (409)
                      +++++||+++|++++|+++..+.+++.++++.++++++++++...+.+.............+......   ..       
T Consensus        88 ~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (563)
T PRK06710         88 VIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV  167 (563)
T ss_pred             HHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchh
Confidence            99999999999999999999999999999999999999999866554433222111111111000000   00       


Q ss_pred             -------------------Cccccccc-hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh-hcccC-
Q 015313          152 -------------------ETTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYT-  209 (409)
Q Consensus       152 -------------------~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~-  209 (409)
                                         ........ ..........+++++++|||||||.||+|.++|+++......... ..... 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  247 (563)
T PRK06710        168 QKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKE  247 (563)
T ss_pred             hcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCC
Confidence                               00000000 000011123478999999999999999999999999765433322 22333 


Q ss_pred             CCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (409)
Q Consensus       210 ~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  289 (409)
                      .++++++.+|++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++... 
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~-  316 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA----------IKKHKVTLFPGAPTIYIALLNSPL-  316 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcCCc-
Confidence            456889999999999987666778999999999998899988888          788999999999999999876421 


Q ss_pred             hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCeEEEE
Q 015313          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKI  368 (409)
Q Consensus       290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~i  368 (409)
                             ....+++++|.+++||+++++++.+++.+.+++++++.||+||++.+..... ......+++|.|.+++.+++
T Consensus       317 -------~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i  389 (563)
T PRK06710        317 -------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMI  389 (563)
T ss_pred             -------cccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEE
Confidence                   1223567899999999999999999999988999999999999987554322 22334678999999999999


Q ss_pred             ee-CCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          369 AE-DESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       369 vd-~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +| +++++++.| .|||+++|+.++.||+++|+.+.+. .||||
T Consensus       390 ~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~  433 (563)
T PRK06710        390 MSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWL  433 (563)
T ss_pred             EECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcc
Confidence            99 556777777 8999999999999999999999887 67897

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-47  Score=375.09  Aligned_cols=362  Identities=18%  Similarity=0.298  Sum_probs=288.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccC-CCCCEEEEEeCCCHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFE   80 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~-~~g~~V~l~~~~~~~   80 (409)
                      ++.+.|..++  .|+++|+++.+..+||.||.++++++|..|.+.                 |+ .+|++|+++++|+++
T Consensus         4 ~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~-----------------g~~~~~~~V~i~~~n~~~   64 (540)
T PRK13388          4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIAL-----------------ADPDRPLHVGVLLGNTPE   64 (540)
T ss_pred             hHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCcH
Confidence            4667777765  699999999999999999999999999999994                 88 799999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccc-cc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD-QS  159 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  159 (409)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++++....+.+.. ......+.+.. ..   ...... ..
T Consensus        65 ~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~i~~~~-~~---~~~~~~~~~  139 (540)
T PRK13388         65 MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD-LPGVRVLDVDT-PA---YAELVAAAG  139 (540)
T ss_pred             HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc-ccCceEEEccc-hh---hhhhhcccc
Confidence            99999999999999999999999999999999999999999987766554431 01112221111 00   000000 00


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      .........++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|..++...++.++..|++
T Consensus       140 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~  219 (540)
T PRK13388        140 ALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA  219 (540)
T ss_pred             CcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence            00111224568999999999999999999999999998888888888999999999999999999887656678999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.+++..+++.          ++++++|++..+|..+..++...+.        .....++++.+  .|+++++..
T Consensus       220 ~v~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~l~~l~~~~~~--------~~~~~~~l~~~--~G~~~~~~~  279 (540)
T PRK13388        220 VALPAKFSASGFLDD----------VRRYGATYFNYVGKPLAYILATPER--------PDDADNPLRVA--FGNEASPRD  279 (540)
T ss_pred             EEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCCCC--------ccccccceEEE--ECCCCCHHH
Confidence            999988889988888          7889999999999999888764221        01123456643  366678888


Q ss_pred             HHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEE-----------EeeCCCCCCC-Cc-cceEEEe
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK-----------IAEDESGSDA-AG-VGEICVK  386 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~-----------ivd~~~~~~~-~~-~Gel~v~  386 (409)
                      ..+|.+.+++++++.||+||+++++....  ....+++|+|++++++.           ++|++|+.+. ++ .|||+++
T Consensus       280 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~  357 (540)
T PRK13388        280 IAEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNT  357 (540)
T ss_pred             HHHHHHHhCCceecccccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEe
Confidence            89999989999999999999987665432  23567899999997753           5566666553 34 8999998


Q ss_pred             -CcchhhhhcCCCcccchh-hcccC
Q 015313          387 -SPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       387 -g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                       |++++.|||++|++|++. .+|||
T Consensus       358 ~g~~~~~gY~~~~~~t~~~~~~g~~  382 (540)
T PRK13388        358 AGAGFFEGYYNNPEATAERMRHGMY  382 (540)
T ss_pred             cCCcccccccCChHHHHHHhhcCce
Confidence             999999999999999888 58897

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6e-47  Score=382.37  Aligned_cols=364  Identities=18%  Similarity=0.204  Sum_probs=280.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      |+.+.+.++  .+|+++|+++.+     +++||+||.+++.++|+.|++.                 |+++||+|+++++
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-----------------Gv~~gd~V~i~~~  147 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRAL-----------------GVGPGDRVAAYLP  147 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            455555543  579999999743     5899999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccCC--ceeccCC
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP  145 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~  145 (409)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+.++......  ..+.+..
T Consensus       148 n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (655)
T PRK03584        148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPY  227 (655)
T ss_pred             CCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEec
Confidence            9999999999999999999999999999999999999999999998643         2233333222221  1111111


Q ss_pred             CCC---------CCCCccccc--cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH-HHHHHHhhcccCCCCe
Q 015313          146 VPN---------VSSETTVFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSADQ  213 (409)
Q Consensus       146 ~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~d~  213 (409)
                      ...         ...+.....  ............+++++|+|||||||.||||+++|++++. .+......+++.++|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  307 (655)
T PRK03584        228 LGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDR  307 (655)
T ss_pred             CCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCE
Confidence            100         000000000  0001111234568999999999999999999999998764 4555566778889999


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  289 (409)
                      +++..++.|....  .++.+|+.|+++++.++    .++..+++.          ++++++|++.++|++++.+.+....
T Consensus       308 ~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        308 FFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDL----------AAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             EEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH----------HHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            9999999987653  36788999999999863    467888888          7889999999999999988763110


Q ss_pred             hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh--CCcccccccccccccccc-ccCCCCCCccccccccCCeEE
Q 015313          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV  366 (409)
Q Consensus       290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~tE~g~~~~-~~~~~~~~~~~~G~p~~~~~~  366 (409)
                            .....++++||.+++||+++++++.+.+.+.+  ++.+.+.||+||+++... ..+......+++|.|.+|+++
T Consensus       376 ------~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~  449 (655)
T PRK03584        376 ------PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAV  449 (655)
T ss_pred             ------ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCcee
Confidence                  11235678999999999999999999999988  468999999999864332 223334567889999999999


Q ss_pred             EEeeCCCCCCCCccceEEEeCc--chhhhhcCCCcccc
Q 015313          367 KIAEDESGSDAAGVGEICVKSP--SLFKEYWKLPKESR  402 (409)
Q Consensus       367 ~ivd~~~~~~~~~~Gel~v~g~--~~~~gY~~~~~~t~  402 (409)
                      +|+|++|++++++.|||+++||  +++.|||++|+.++
T Consensus       450 ~ivd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~  487 (655)
T PRK03584        450 EAWDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSR  487 (655)
T ss_pred             EEECCCCCCCCCCceEEEEccCCCCCcceeeCCCccch
Confidence            9999999988444899999996  79999999998765

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-47  Score=373.72  Aligned_cols=371  Identities=19%  Similarity=0.277  Sum_probs=292.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.+.++.+|+++|++.+.+.+||+||++++.++|+.|.+.                 |+++||+|+++++|+++
T Consensus        10 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~n~~~   72 (540)
T PRK06164         10 DTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQ-----------------GVRRGDRVAVWLPNCIE   72 (540)
T ss_pred             CCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCcHH
Confidence            4788999999999999999999999999999999999999999984                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhcc--CCc-eeccC-CCCCCCC
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS--GAK-FSLIP-PVPNVSS  151 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~--~~~-~~~~~-~~~~~~~  151 (409)
                      ++++++||+++|++++|+++..+.+++.++++++++++++++++..     ..+.......  ... ...+. .......
T Consensus        73 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (540)
T PRK06164         73 WVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPA  152 (540)
T ss_pred             HHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCC
Confidence            9999999999999999999999999999999999999999987642     2222211110  011 11111 0000000


Q ss_pred             Ccc-----ccccc-----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCch
Q 015313          152 ETT-----VFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (409)
Q Consensus       152 ~~~-----~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (409)
                      ...     .....     .........++++++++|||||||.||+|.++|+++...+......+++..++++++.+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~  232 (540)
T PRK06164        153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFC  232 (540)
T ss_pred             CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCch
Confidence            000     00000     00001123467899999999999999999999999999988888888899999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhh
Q 015313          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (409)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  301 (409)
                      |.+|+. .++.++..|+++++.+.+++..++..          ++++++|+++++|.++..+.+.         .....+
T Consensus       233 ~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~l~~l~~~---------~~~~~~  292 (540)
T PRK06164        233 GVFGFS-TLLGALAGGAPLVCEPVFDAARTARA----------LRRHRVTHTFGNDEMLRRILDT---------AGERAD  292 (540)
T ss_pred             hHHHHH-HHHHHHhcCceEEecCCCCHHHHHHH----------HHHhCCeeecCCHHHHHHHHHh---------hcccCC
Confidence            999996 58999999999999999999988888          7889999999999999999875         123346


Q ss_pred             hccceEEEeeC-CCCCHHHHHHHHHHhCCccccccccccccccccccCCC---CCCcccccccc-CCeEEEEeeC-CCCC
Q 015313          302 AKQLRLMMCGS-SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPL-PGVQVKIAED-ESGS  375 (409)
Q Consensus       302 ~~~lr~v~~gG-~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~---~~~~~~~G~p~-~~~~~~ivd~-~~~~  375 (409)
                      +++++.+..+| .+...++.+.+.+. ++++++.||+||++.++......   .....+.|.|. ++++++|+|+ ++++
T Consensus       293 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~  371 (540)
T PRK06164        293 FPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL  371 (540)
T ss_pred             CcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC
Confidence            78899887766 45555565555554 89999999999998665433221   22334568875 8999999995 4677


Q ss_pred             CCCc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          376 DAAG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       376 ~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      ++.| .||||++|++++.|||++|++|++.+  ||||
T Consensus       372 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~  408 (540)
T PRK06164        372 LPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYF  408 (540)
T ss_pred             CCCCCeeEEEEecccccccccCCchhhhhcccCCCce
Confidence            7777 89999999999999999999999884  7887

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.1e-47  Score=344.36  Aligned_cols=388  Identities=21%  Similarity=0.283  Sum_probs=299.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEe-----------------------CCccccHHHHHHHHHHHHHHHhhCCCCccccccccc
Q 015313            2 EVFKAAYKKGSMARDSVAIRA-----------------------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~-----------------------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~   58 (409)
                      ++.+.+.+..+.+.++.++-.                       +.+++||.|+..++..+++.|.+             
T Consensus        42 Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~-------------  108 (678)
T KOG1180|consen   42 TLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK-------------  108 (678)
T ss_pred             cHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-------------
Confidence            456777777777777777632                       23699999999999999999999             


Q ss_pred             ccccccCCCCCE-EEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC
Q 015313           59 NSAVLAGGCGAR-IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG  137 (409)
Q Consensus        59 ~~~~~g~~~g~~-V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~  137 (409)
                          +|++++++ |+|+++.+.+|+.+++||++.+..+|.++..+.++-+.|-|++++++.+||+.+.++.+....+...
T Consensus       109 ----lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~  184 (678)
T KOG1180|consen  109 ----LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK  184 (678)
T ss_pred             ----hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC
Confidence                58887766 9999999999999999999999999999999999999999999999999999999987776655544


Q ss_pred             C-cee-ccCCCCCCCCCcccc----------c--------cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH
Q 015313          138 A-KFS-LIPPVPNVSSETTVF----------D--------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA  197 (409)
Q Consensus       138 ~-~~~-~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~  197 (409)
                      . +.+ ...+.+......+..          +        .....++.++.++|+|+|+|||||||.||||+++|+|+++
T Consensus       185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA  264 (678)
T KOG1180|consen  185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVA  264 (678)
T ss_pred             ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHh
Confidence            2 222 222211111111110          0        0011224445789999999999999999999999999999


Q ss_pred             HHHHHHhhc-ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecc
Q 015313          198 QVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGV  276 (409)
Q Consensus       198 ~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~  276 (409)
                      .+....... .+.+.|+++.++||.|++.+.. -+.+++-|+.+-..+..+-.+....+.+.  -++-+...+||.+.++
T Consensus       265 ~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg--~kGD~~~lkPTiM~~V  341 (678)
T KOG1180|consen  265 GVTGVGENVPELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKG--CKGDLTELKPTIMAAV  341 (678)
T ss_pred             hhhhhcccCcccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccC--CcCccccccchhhhhh
Confidence            998887665 6889999999999999999976 56679999999887753322222111110  1122666899999999


Q ss_pred             hHHHHHHHHhhh----hhhHHHH------------------------------HHhhhhhccceEEEeeCCCCCHHHHHH
Q 015313          277 PTMYTRLIQGYE----AMDTELQ------------------------------AASASAAKQLRLMMCGSSALPLPVMQQ  322 (409)
Q Consensus       277 P~~l~~l~~~~~----~~~~~~~------------------------------~~~~~~~~~lr~v~~gG~~~~~~~~~~  322 (409)
                      |.+++++.+..-    .++...+                              ..+.....+||++++||+++++++.+.
T Consensus       342 pAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF  421 (678)
T KOG1180|consen  342 PAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRF  421 (678)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHH
Confidence            999998866422    1111111                              122334569999999999999999999


Q ss_pred             HHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCC-CCCCC--ccceEEEeCcchhhhhcCCC
Q 015313          323 WETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DES-GSDAA--GVGEICVKSPSLFKEYWKLP  398 (409)
Q Consensus       323 ~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~-~~~~~--~~Gel~v~g~~~~~gY~~~~  398 (409)
                      +...+.|++.++||.||+++..+-........+.+|.|+++++++++| +++ ....+  ..||||++|+++..|||+||
T Consensus       422 ~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~  501 (678)
T KOG1180|consen  422 MNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNE  501 (678)
T ss_pred             HHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCCh
Confidence            999999999999999999877665555667788999999999999999 333 32222  36999999999999999999


Q ss_pred             cccchh--h-cc--cC
Q 015313          399 KESRTL--S-SC--LY  409 (409)
Q Consensus       399 ~~t~~~--~-~g--~~  409 (409)
                      +.|++.  . ||  ||
T Consensus       502 ekT~e~ft~~~G~~WF  517 (678)
T KOG1180|consen  502 EKTKEDFTVEDGQRWF  517 (678)
T ss_pred             hhhhhhceecCCcEEE
Confidence            999999  3 78  98

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.2e-46  Score=370.76  Aligned_cols=372  Identities=23%  Similarity=0.357  Sum_probs=292.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+|+++|+.++++.+||.||.++++++|.+|.+.                 |+++||+|+++++|++++
T Consensus        22 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~~~~   84 (541)
T TIGR03205        22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRA-----------------GYGKDASVALYLGNTPDH   84 (541)
T ss_pred             CHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChHH
Confidence            567889999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH--HHHHHHHhhccCCceeccCCCCCCCC--------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY--REVLQNVASKSGAKFSLIPPVPNVSS--------  151 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------  151 (409)
                      +++++||+++|++++|+++..+.+++.++++.++++++++++..  .+...+...........+........        
T Consensus        85 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T TIGR03205        85 PINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPI  164 (541)
T ss_pred             HHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEeccccccccccccccc
Confidence            99999999999999999999999999999999999999998632  12222211111111111111000000        


Q ss_pred             Cccc-----c---cc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc------ccCCCCeEEE
Q 015313          152 ETTV-----F---DQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EYTSADQFLH  216 (409)
Q Consensus       152 ~~~~-----~---~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~------~~~~~d~~l~  216 (409)
                      ....     .   +. ..........++++++++|||||||.||+|.++|+++....... ..+      .....+++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~  243 (541)
T TIGR03205       165 PADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVIC  243 (541)
T ss_pred             CCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEE
Confidence            0000     0   00 00111123456899999999999999999999999987654422 211      2234579999


Q ss_pred             ecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHH
Q 015313          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (409)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~  296 (409)
                      ..|++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        
T Consensus       244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------  305 (541)
T TIGR03205       244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD----------IEEKRATVFPGVPTMWIALANDPS--------  305 (541)
T ss_pred             eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCeEeechHHHHHHHHhCcc--------
Confidence            99999999987778889999999999988899999988          778999999999999998876411        


Q ss_pred             HhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCeEEEEe--eCCC
Q 015313          297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIA--EDES  373 (409)
Q Consensus       297 ~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~iv--d~~~  373 (409)
                      ....+++++|.++.||+++++++.+++.+.++.++++.||+||++....... ......+++|.|++++.++|.  |+++
T Consensus       306 ~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~  385 (541)
T TIGR03205       306 LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPT  385 (541)
T ss_pred             ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCC
Confidence            1234567899999999999999999999888999999999999987655432 223456789999999998876  4667


Q ss_pred             CCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          374 GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       374 ~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++++.| .|||+++|++++.|||++|+.|++. .++||
T Consensus       386 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  423 (541)
T TIGR03205       386 KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRF  423 (541)
T ss_pred             ccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCc
Confidence            777777 7999999999999999999999887 57886

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.3e-46  Score=378.66  Aligned_cols=363  Identities=16%  Similarity=0.176  Sum_probs=274.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~-----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      |+.+.+.++   .++++|+++.+     +++||+||.+++.++|+.|++.                 |+++||+|+++++
T Consensus        88 n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-----------------Gv~~GdrV~i~~~  147 (652)
T TIGR01217        88 NYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRAL-----------------GVRPGDRVSGYLP  147 (652)
T ss_pred             eHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            555555553   46889988742     4899999999999999999984                 9999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC-Cc-eeccCC
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG-AK-FSLIPP  145 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~-~~~~~~  145 (409)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+..+..... .. .+.+..
T Consensus       148 n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (652)
T TIGR01217       148 NIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY  227 (652)
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeC
Confidence            9999999999999999999999999999999999999999999998653         333444333322 11 111111


Q ss_pred             CCC----CC---CCccccccc-----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH-HHHHHHhhcccCCCC
Q 015313          146 VPN----VS---SETTVFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSAD  212 (409)
Q Consensus       146 ~~~----~~---~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~d  212 (409)
                      ...    ..   ......+..     ..........+++++|+|||||||.||||+++|++++. .+......++++++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d  307 (652)
T TIGR01217       228 LGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGD  307 (652)
T ss_pred             CCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCc
Confidence            000    00   000000000     00011223568999999999999999999999998754 444455567888999


Q ss_pred             eEEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhh
Q 015313          213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (409)
Q Consensus       213 ~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  288 (409)
                      ++++..|+.|....  .++.+|+.|+++++.++    .++..+++.          ++++++|++...|.+++.+.+. .
T Consensus       308 ~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~-~  374 (652)
T TIGR01217       308 RLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDI----------AERTGATLFGTSAKYVMACRKA-G  374 (652)
T ss_pred             EEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHH----------HHHhCCeEEecCHHHHHHHHhc-C
Confidence            99999999998643  25688999999999864    256778887          7889999998888777666442 1


Q ss_pred             hhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC--Ccccccccccccccccc-ccCCCCCCccccccccCCeE
Q 015313          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG--HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQ  365 (409)
Q Consensus       289 ~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~--~~v~~~YG~tE~g~~~~-~~~~~~~~~~~~G~p~~~~~  365 (409)
                      ..     .....++++||.+++||+++++++.+++.+.++  ..+.+.||+||+++... ..+......+++|.|.+|++
T Consensus       375 ~~-----~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~  449 (652)
T TIGR01217       375 VH-----PARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTA  449 (652)
T ss_pred             CC-----ccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCc
Confidence            00     113357899999999999999999999999885  35678899999753332 22323445678999999999


Q ss_pred             EEEeeCCCCCCCCccceEEEeCc--chhhhhcCCCcccc
Q 015313          366 VKIAEDESGSDAAGVGEICVKSP--SLFKEYWKLPKESR  402 (409)
Q Consensus       366 ~~ivd~~~~~~~~~~Gel~v~g~--~~~~gY~~~~~~t~  402 (409)
                      ++|+|++|++++++.|||+++||  +++.|||++|+.|+
T Consensus       450 v~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~  488 (652)
T TIGR01217       450 VQSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSK  488 (652)
T ss_pred             eEEECCCCCCCCCCccEEEEecCCCccccceeCCCccch
Confidence            99999999988645899999996  68999999999775

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=7.1e-47  Score=371.26  Aligned_cols=357  Identities=17%  Similarity=0.272  Sum_probs=294.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      |+.+.|.+.++.+|+++|+.+.++.+||+||.+++.++|..|.+.                 |+++|++|+++++|+.++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------g~~~~~~V~i~~~~~~~~   63 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKR-----------------ILPKKSPIIVYGHMEPHM   63 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHh-----------------CCCCCCeEEEEeCCCHHH
Confidence            578999999999999999999999999999999999999999985                 889999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++..+++.++++.+.......      ...+.+........     .....
T Consensus        64 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~  132 (502)
T TIGR01734        64 LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQIITLSALEQAET-----SGGPV  132 (502)
T ss_pred             HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC------CceEEchHhhhhhh-----hcCCc
Confidence            99999999999999999999999999999999999999998764322111      11111110000000     00000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||+|.++|+++...+.+....+....+++++...|++|..+++ .++.++..|++++
T Consensus       133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  211 (502)
T TIGR01734       133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLH  211 (502)
T ss_pred             cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEE
Confidence            011223568899999999999999999999999999998888888888999999999999999885 5889999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+++.          +.+++++.+.++|.+++.++...        ......+++++.++++|++++.+
T Consensus       212 ~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~p~~~~~~l~~~--------~~~~~~~~~l~~~~~~G~~~~~~  273 (502)
T TIGR01734       212 CLDKDITNNFKLLFEE----------LPKTGLNVWVSTPSFVDMCLLDP--------NFNQENYPHLTHFLFCGEELPVK  273 (502)
T ss_pred             EcCHHHhcCHHHHHHH----------HHHcCCeEEEEChhHHHHHHhcc--------ccccccCCcccEEEEcCCcCCHH
Confidence            9876   366777777          77899999999999998776531        12334578999999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccccC-----CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchh
Q 015313          319 VMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (409)
Q Consensus       319 ~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-----~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~  391 (409)
                      +.+.+.+.+ ++++++.||+||+++.+....     .......++|.|.++++++|+|++++.++.| .|||+++|++++
T Consensus       274 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~  353 (502)
T TIGR01734       274 TAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVS  353 (502)
T ss_pred             HHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEcccccc
Confidence            999999988 789999999999875433211     1123445799999999999999999988887 899999999999


Q ss_pred             hhhcCCCcccchhh
Q 015313          392 KEYWKLPKESRTLS  405 (409)
Q Consensus       392 ~gY~~~~~~t~~~~  405 (409)
                      .||+++|+.|.+.+
T Consensus       354 ~gy~~~~~~~~~~~  367 (502)
T TIGR01734       354 KGYLNNPEKTAEAF  367 (502)
T ss_pred             ccccCCcccchHhh
Confidence            99999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-46  Score=370.52  Aligned_cols=374  Identities=22%  Similarity=0.345  Sum_probs=296.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++|+++|++++++++||.||.++++++|..|.+.                .|+++|++|+++++|++++
T Consensus        24 ~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   87 (560)
T PRK08974         24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNG----------------LGLKKGDRVALMMPNLLQY   87 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            477899999999999999999999999999999999999999842                4899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC-CCCCCC---------
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPNVSS---------  151 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------  151 (409)
                      +++++||+++|++++|+++..+.+++.++++.+++++++++++..+.+..+........+.... ......         
T Consensus        88 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (560)
T PRK08974         88 PIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV  167 (560)
T ss_pred             HHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccch
Confidence            9999999999999999999999999999999999999999877665555543322221111100 000000         


Q ss_pred             ------------Cccccccc--------hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---cc
Q 015313          152 ------------ETTVFDQS--------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EY  208 (409)
Q Consensus       152 ------------~~~~~~~~--------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~  208 (409)
                                  ........        .........++++++++|||||||.||+|.++|.++...+......+   ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~  247 (560)
T PRK08974        168 VKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH  247 (560)
T ss_pred             hhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccC
Confidence                        00000000        00001123568999999999999999999999999988765543332   23


Q ss_pred             CCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhh
Q 015313          209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (409)
Q Consensus       209 ~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~  287 (409)
                      ...+.++..+|++|.+++....+..+..|+++++.. ..++..+++.          ++++++|.+.++|.+++.+.+..
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  317 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE----------LKKYPFTAITGVNTLFNALLNNE  317 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHH----------HHhcCcceEcCcHHHHHHHHhCc
Confidence            446788899999999988666777788998877654 4567777777          78899999999999999998752


Q ss_pred             hhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCC-CCCCccccccccCCeEE
Q 015313          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQV  366 (409)
Q Consensus       288 ~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~~~~~~  366 (409)
                      .        ....+++++|.+++||+++++.+.++|.+.+|+++++.||+||++..+..+.. .....+++|.|+|++++
T Consensus       318 ~--------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~  389 (560)
T PRK08974        318 E--------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEI  389 (560)
T ss_pred             C--------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEE
Confidence            1        12345678999999999999999999999999999999999999866554322 23446789999999999


Q ss_pred             EEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          367 KIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       367 ~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +|+|+++++++.| .|||+++|++++.||+++++.+++. .+|||
T Consensus       390 ~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~  434 (560)
T PRK08974        390 KLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWL  434 (560)
T ss_pred             EEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCc
Confidence            9999999988888 8999999999999999999999877 67887

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.8e-47  Score=443.15  Aligned_cols=358  Identities=21%  Similarity=0.319  Sum_probs=300.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++|++|+|+++|++++
T Consensus       512 ~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~  574 (5163)
T PRK12316        512 GVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIER-----------------GVGPDVLVGVAMERSIEM  574 (5163)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            478999999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++.+....+...   .......+......     .......
T Consensus       575 i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~  646 (5163)
T PRK12316        575 VVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA---AGVQVLDLDRPAAW-----LEGYSEE  646 (5163)
T ss_pred             HHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc---cCceEEEecCcchh-----hccCCCC
Confidence            999999999999999999999999999999999999999998654432110   01111111111000     0000111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||.++|+++.+.+.+....++++.+|+++..+|++|..+++ .++.+|..|++++
T Consensus       647 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~  725 (5163)
T PRK12316        647 NPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVW-EFFWPLMSGARLV  725 (5163)
T ss_pred             CCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHH-HHHHHHhCCCEEE
Confidence            112234678999999999999999999999999999999999999999999999999999999986 5899999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   +++..+++.          ++++++|++.++|++++.+++..          ....++++|.+++||++++++
T Consensus       726 i~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~----------~~~~~~~l~~~~~gGe~l~~~  785 (5163)
T PRK12316        726 VAAPGDHRDPAKLVEL----------INREGVDTLHFVPSMLQAFLQDE----------DVASCTSLRRIVCSGEALPAD  785 (5163)
T ss_pred             ECCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcc----------ccccCCCccEEEEeeccCCHH
Confidence            9853   678888888          78899999999999999987641          123578899999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccc--cCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313          319 VMQQWETIT-GHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (409)
Q Consensus       319 ~~~~~~~~~-~~~v~~~YG~tE~g~~~~~--~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY  394 (409)
                      +.++|.+.+ +++++|.||+||+++.++.  .........++|+|+++++++|+|+++++++.| .|||+|+|+++++||
T Consensus       786 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY  865 (5163)
T PRK12316        786 AQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGY  865 (5163)
T ss_pred             HHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhh
Confidence            999998776 7899999999999854332  222234566899999999999999999999988 899999999999999


Q ss_pred             cCCCcccchhh
Q 015313          395 WKLPKESRTLS  405 (409)
Q Consensus       395 ~~~~~~t~~~~  405 (409)
                      +|+|+.|++.|
T Consensus       866 l~~~~~t~~~f  876 (5163)
T PRK12316        866 HGRPGLTAERF  876 (5163)
T ss_pred             CCChhhhhhhC
Confidence            99999999875

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-46  Score=378.84  Aligned_cols=360  Identities=19%  Similarity=0.176  Sum_probs=274.9

Q ss_pred             hHHH-HHHHhcccCCCeeEEEeCC--------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            2 EVFK-AAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         2 ~~~~-~l~~~~~~~~~~~a~~~~~--------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      |+.+ .|.+++.++||++|+++.+        +++||+||.+++.++|+.|++                 +|+++||+|+
T Consensus       175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrVa  237 (728)
T PLN03052        175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-----------------LGFEKGDAIA  237 (728)
T ss_pred             EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            4444 3445556689999999854        379999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH------HHHHHHhhccCCceeccCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR------EVLQNVASKSGAKFSLIPPV  146 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~  146 (409)
                      ++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...      +....+........+++...
T Consensus       238 i~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~  317 (728)
T PLN03052        238 IDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPAD  317 (728)
T ss_pred             EEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCC
Confidence            999999999999999999999999999999999999999999999999987532      11222111111111121110


Q ss_pred             CC---------CCCCccccccc------hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCC
Q 015313          147 PN---------VSSETTVFDQS------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA  211 (409)
Q Consensus       147 ~~---------~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  211 (409)
                      ..         ...+.+.....      .........++++++|+|||||||.||||+++|.+++..+......++++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~  397 (728)
T PLN03052        318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG  397 (728)
T ss_pred             CCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence            00         00000000000      0000111245899999999999999999999999988777666666788899


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       212 d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      |++++..|++|.++.+ .++.+|+.|+++++.++ .....+++.          ++++++|++.++|++++.+.+...  
T Consensus       398 d~~~~~~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~----------i~~~~vT~l~~~Pt~l~~l~~~~~--  464 (728)
T PLN03052        398 DIVCWPTNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKF----------VQDAKVTMLGTVPSIVKTWKNTNC--  464 (728)
T ss_pred             cEEEECCCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHH----------HHHHCCCEEEECHHHHHHHHhcCC--
Confidence            9999999999999985 48899999999999885 345667777          788999999999999998876411  


Q ss_pred             hHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC-Ccccccccccccccccc-ccCCCCCCccccccccCCeEEEE
Q 015313          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKI  368 (409)
Q Consensus       291 ~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~g~~~~-~~~~~~~~~~~~G~p~~~~~~~i  368 (409)
                            ....++++||.+++||++++++....+.+.++ .++.+.||+||+++... ..+......+++|.|.+|++++|
T Consensus       465 ------~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v  538 (728)
T PLN03052        465 ------MAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFI  538 (728)
T ss_pred             ------cccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEE
Confidence                  13457889999999999999999888777765 58999999999875433 22223445678999999999999


Q ss_pred             eeCCCCCCCCc---cceEEEeCcch--hhhhcCC
Q 015313          369 AEDESGSDAAG---VGEICVKSPSL--FKEYWKL  397 (409)
Q Consensus       369 vd~~~~~~~~~---~Gel~v~g~~~--~~gY~~~  397 (409)
                      +|++|++++.|   .|||+++++..  ..+|+|+
T Consensus       539 ~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~  572 (728)
T PLN03052        539 LDDSGNPYPDDAPCTGELALFPLMFGASSTLLNA  572 (728)
T ss_pred             ECCCCCCCCCCCCceEEEEEeCCCCCCCccccCc
Confidence            99999999875   59999986532  3455654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=9.9e-47  Score=435.53  Aligned_cols=358  Identities=23%  Similarity=0.363  Sum_probs=299.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++|++|+|++++++++
T Consensus       513 ~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~  575 (3956)
T PRK12467        513 CVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAA-----------------GVGPDVLVGIAVERSIEM  575 (3956)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            478899999999999999999999999999999999999999995                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++....+..   ........+......     .......
T Consensus       576 vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~  647 (3956)
T PRK12467        576 VVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV---PAGLRSLCLDEPADL-----LCGYSGH  647 (3956)
T ss_pred             HHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc---ccCccEEEecccccc-----ccccCCC
Confidence            99999999999999999999999999999999999999999854432211   001111111111000     0000111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||.++|+++.+.+.+....+++..+|+++...|++|..+.+ .++.+|..|++++
T Consensus       648 ~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv  726 (3956)
T PRK12467        648 NPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVT-ELFGALASGATLH  726 (3956)
T ss_pred             CCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence            112234678999999999999999999999999999999998889999999999999999999985 5899999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+++.          ++++++|++.++|++++.+++...          .....++|.+++||++++++
T Consensus       727 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~----------~~~~~~lr~i~~gGe~l~~~  786 (3956)
T PRK12467        727 LLPPDCARDAEAFAAL----------MADQGVTVLKIVPSHLQALLQASR----------VALPRPQRALVCGGEALQVD  786 (3956)
T ss_pred             EcCccccCCHHHHHHH----------HHHcCCeEEEcCHHHHHHHHhhhc----------cccCCcccEEEEEeecCCHH
Confidence            9884   578888888          788999999999999999976421          12345689999999999999


Q ss_pred             HHHHHHHHh-CCccccccccccccccccccCCC----CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh
Q 015313          319 VMQQWETIT-GHRLLERYGMTEFVMAISNPLRG----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       319 ~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~----~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~  392 (409)
                      +.++|.+.+ +++++|.||+||+++.++.....    .....++|+|+++++++|+|+++++++.| +|||+|+|+++++
T Consensus       787 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~  866 (3956)
T PRK12467        787 LLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLAR  866 (3956)
T ss_pred             HHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccch
Confidence            999999987 78999999999998665432211    11235799999999999999999999998 8999999999999


Q ss_pred             hhcCCCcccchhh
Q 015313          393 EYWKLPKESRTLS  405 (409)
Q Consensus       393 gY~~~~~~t~~~~  405 (409)
                      ||||+|++|++.|
T Consensus       867 GYl~~p~~T~~~F  879 (3956)
T PRK12467        867 GYHRRPALTAERF  879 (3956)
T ss_pred             hhcCCccccHhhC
Confidence            9999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=9.8e-47  Score=441.82  Aligned_cols=358  Identities=21%  Similarity=0.281  Sum_probs=300.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++|++|+|+++|++++
T Consensus      4552 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~i~~~~s~~~ 4614 (5163)
T PRK12316       4552 CVHQLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIAR-----------------GVGPEVLVGIAMERSAEM 4614 (5163)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            477899999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...   .+.....+......      ......
T Consensus      4615 iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~ 4685 (5163)
T PRK12316       4615 MVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP---DGLASLALDRDEDW------EGFPAH 4685 (5163)
T ss_pred             HHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc---cCcceEeecchhhc------ccCCcc
Confidence            999999999999999999999999999999999999999998765433110   11111111110000      000111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||.++|+++.+.+.+....++++++|+++...|++|..+.+ .++.+|..|++++
T Consensus      4686 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 4764 (5163)
T PRK12316       4686 DPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHE-GLYHPLINGASVV 4764 (5163)
T ss_pred             CCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHH-HHHHHHhCCCEEE
Confidence            122234678999999999999999999999999999999998889999999999999999998875 5899999999999


Q ss_pred             EccC--cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.  +++..+++.          ++++++|+++++|++++.+.+...         ....+++||.+++||+++++++
T Consensus      4765 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~---------~~~~~~~lr~v~~gGe~l~~~~ 4825 (5163)
T PRK12316       4765 IRDDSLWDPERLYAE----------IHEHRVTVLVFPPVYLQQLAEHAE---------RDGEPPSLRVYCFGGEAVAQAS 4825 (5163)
T ss_pred             EcCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhhhc---------cccCCCCccEEEEecccCCHHH
Confidence            9874  267888887          788999999999999999987522         1126789999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh
Q 015313          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~  392 (409)
                      .+++.+.+ ++++++.||+||+++.++....     ......++|+|+++++++|+|+++++++.| +|||+|+||++++
T Consensus      4826 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~g~~GEl~i~G~~v~~ 4905 (5163)
T PRK12316       4826 YDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVAR 4905 (5163)
T ss_pred             HHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEECCCCCcCCCCCCceEEECCcccch
Confidence            98888776 6899999999999876543221     123456899999999999999999999988 8999999999999


Q ss_pred             hhcCCCcccchhh
Q 015313          393 EYWKLPKESRTLS  405 (409)
Q Consensus       393 gY~~~~~~t~~~~  405 (409)
                      ||||+|+.|++.|
T Consensus      4906 GY~~~~~~t~~~f 4918 (5163)
T PRK12316       4906 GYLERPALTAERF 4918 (5163)
T ss_pred             hhcCChhhhhhhc
Confidence            9999999999885

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-46  Score=367.06  Aligned_cols=360  Identities=20%  Similarity=0.288  Sum_probs=289.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|..++.  ++++|+.++++++||.||.++++++|++|.++                .|++++++|+++++|++++
T Consensus         6 ~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~----------------~~~~~~~~V~i~~~n~~~~   67 (529)
T PRK07867          6 TVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRAR----------------LDPTRPPHVGVLLDNTPEF   67 (529)
T ss_pred             cHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCCHHH
Confidence            56788888775  89999999999999999999999999999984                3788999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccc--cc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--QS  159 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  159 (409)
                      +++++||+++|++++|+++..+.+++.+++++++++++|++++....+..+..  ....+.+...    ...+...  ..
T Consensus        68 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~l~~~~~  141 (529)
T PRK07867         68 SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDP--GVRVINVDSP----AWADELAAHRD  141 (529)
T ss_pred             HHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhcc--CceEEEeccc----cHHHHhcccCC
Confidence            99999999999999999999999999999999999999999988776554421  1111111110    0000000  00


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      .........++++++++|||||||.||+|+++|+++..........++++..|+++..+|++|..+++..++.++..|++
T Consensus       142 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~  221 (529)
T PRK07867        142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGAS  221 (529)
T ss_pred             CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCce
Confidence            00112234668999999999999999999999999998888888888889999999999999999998778888999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.+++..+++.          ++++++|++.++|..+..+++..+.        .....+++|. +.||+.+++..
T Consensus       222 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~ll~~~~~--------~~~~~~~lr~-~~gg~~~~~~~  282 (529)
T PRK07867        222 IALRRKFSASGFLPD----------VRRYGATYANYVGKPLSYVLATPER--------PDDADNPLRI-VYGNEGAPGDI  282 (529)
T ss_pred             EEecCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCCc--------ccccccceEE-EecCCCChHHH
Confidence            999998999999888          7789999999999999988764221        1112356885 45888887764


Q ss_pred             HHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeC-CCCCCCCc-------------cceEEE
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-------------VGEICV  385 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~~~-------------~Gel~v  385 (409)
                       .++.+.+|+++++.||+||+++.....+.  ...+++|.|+++  ++|+|+ ++..++.+             .|||++
T Consensus       283 -~~~~~~~g~~l~~~YG~TE~~~~~~~~~~--~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i  357 (529)
T PRK07867        283 -ARFARRFGCVVVDGFGSTEGGVAITRTPD--TPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVN  357 (529)
T ss_pred             -HHHHHHhCCcEEEeecccccccccccCCC--CCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEE
Confidence             67788889999999999999866543322  345689999998  677774 45555443             599999


Q ss_pred             -eCcchhhhhcCCCcccchh-hcccC
Q 015313          386 -KSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       386 -~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                       +|++++.|||++|+.+.+. .+|||
T Consensus       358 ~~g~~~~~gy~~~~~~~~~~~~~g~~  383 (529)
T PRK07867        358 TAGPGGFEGYYNDPEADAERMRGGVY  383 (529)
T ss_pred             ecCCcccccccCChHhhhhhhcCCeE
Confidence             9999999999999999887 68887

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.7e-46  Score=366.47  Aligned_cols=370  Identities=18%  Similarity=0.256  Sum_probs=290.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      ++.+.|+..++.+|+++++.+.    .+.+||.||.++++++|.+|.+.                 |+++||+|+++++|
T Consensus        11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~~d~v~i~~~~   73 (539)
T PRK07008         11 LISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAAL-----------------GVEPGDRVGTLAWN   73 (539)
T ss_pred             CHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCC
Confidence            3577899999999999998752    26899999999999999999994                 89999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCce--eccCCCCCCCCC---
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNVSSE---  152 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---  152 (409)
                      +++++++++||+++|++++|+++..+.+++.++++.++++++++++++.+.+..+........  +...........   
T Consensus        74 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (539)
T PRK07008         74 GYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTP  153 (539)
T ss_pred             cHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcc
Confidence            999999999999999999999999999999999999999999999887776665544332211  111111100000   


Q ss_pred             -ccccc---c-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH--HHHhhcccCCCCeEEEecCchhHHH
Q 015313          153 -TTVFD---Q-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ--MLTEAWEYTSADQFLHCLPLHHVHG  225 (409)
Q Consensus       153 -~~~~~---~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~~~~g  225 (409)
                       ....+   . ..........++++++++|||||||.||+|.+||++++....  .....++...+|++++..|++|..+
T Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        154 LLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             cccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh
Confidence             00000   0 000111234567899999999999999999999999874332  2334567788999999999999887


Q ss_pred             HHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 015313          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (409)
Q Consensus       226 ~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  304 (409)
                      +.. .+.++..|+++++.+ .+++..+++.          ++++++|++.++|.++..+++..+.        ...++++
T Consensus       234 ~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~  294 (539)
T PRK07008        234 WGL-PYSAPLTGAKLVLPGPDLDGKSLYEL----------IEAERVTFSAGVPTVWLGLLNHMRE--------AGLRFST  294 (539)
T ss_pred             HHH-HHHHHhcCceEEEecCCcCHHHHHHH----------HHHcCCEEEEechHHHHHHHhcccc--------cCCCccc
Confidence            743 577889999999874 5688888887          7889999999999999999876332        2346789


Q ss_pred             ceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCccccccccCCeEEEEeeCCC
Q 015313          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDES  373 (409)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----------~~~~~~~G~p~~~~~~~ivd~~~  373 (409)
                      +|.++++|+++++++.+++.+.+++++++.||+||++.........           .....++|+|+|+++++|+|+++
T Consensus       295 l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~  374 (539)
T PRK07008        295 LRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDG  374 (539)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCC
Confidence            9999999999999999999999999999999999998654322110           11246789999999999999988


Q ss_pred             CCCCC--c-cceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          374 GSDAA--G-VGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       374 ~~~~~--~-~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      +.++.  + .|||+++|++++.|||++|+..  ..+|||
T Consensus       375 ~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~--~~~g~~  411 (539)
T PRK07008        375 RELPWDGKAFGDLQVRGPWVIDRYFRGDASP--LVDGWF  411 (539)
T ss_pred             CccCCCCCcceEEEEeCCccchhhcCChhhh--hcCCCc
Confidence            87764  2 6999999999999999998432  247887

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.2e-46  Score=436.08  Aligned_cols=358  Identities=19%  Similarity=0.285  Sum_probs=300.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|+++.+.++||+||+++++++|+.|.+                 +|+++|++|+|++++++++
T Consensus      3721 ~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~-----------------~gv~~~~~V~v~~~~s~~~ 3783 (4334)
T PRK05691       3721 SYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRA-----------------AGVGVDQPVALLAERGLDL 3783 (4334)
T ss_pred             CHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            57899999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC----ceeccCCCCCCCCCccccc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIPPVPNVSSETTVFD  157 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  157 (409)
                      +++++|++++|++++|+++.++.+++.++++++++++++++.........+......    ........   .    ...
T Consensus      3784 ~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~ 3856 (4334)
T PRK05691       3784 LGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV---Q----AGE 3856 (4334)
T ss_pred             HHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc---c----ccc
Confidence            999999999999999999999999999999999999999998765544333222111    01111100   0    000


Q ss_pred             cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      ...........+++.++++|||||||.||||+++|+++.+.+.+....+++++.|+++...++++..+.+ .++.+++.|
T Consensus      3857 ~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l~~G 3935 (4334)
T PRK05691       3857 VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW-QFLAAPLFG 3935 (4334)
T ss_pred             ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH-HHHHHHhCC
Confidence            0011112234678999999999999999999999999999999999999999999999999999998885 589999999


Q ss_pred             CEEEEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCC
Q 015313          238 ATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (409)
Q Consensus       238 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~  314 (409)
                      +++++++.   .++..+++.          ++++++|++.++|+++..++..           ....+++||.+++||++
T Consensus      3936 ~~l~i~~~~~~~~~~~l~~~----------~~~~~vt~~~~~Ps~~~~l~~~-----------~~~~~~~lr~~~~gGe~ 3994 (4334)
T PRK05691       3936 ARVEIVPNAIAHDPQGLLAH----------VQAQGITVLESVPSLIQGMLAE-----------DRQALDGLRWMLPTGEA 3994 (4334)
T ss_pred             CEEEEcCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhh-----------ccccCCCceEEEecCCc
Confidence            99999875   457777777          7789999999999999988753           12346789999999999


Q ss_pred             CCHHHHHHHHHHh-CCccccccccccccccccccC----CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          315 LPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       315 ~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~----~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      +++++.++|.+.+ +++++|.||.||++..++...    .......++|+|+++++++|+|++++++|.| +|||+|+|+
T Consensus      3995 l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~ 4074 (4334)
T PRK05691       3995 MPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGT 4074 (4334)
T ss_pred             CCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecc
Confidence            9999999998876 789999999999987554211    1112334699999999999999999999998 899999999


Q ss_pred             chhhhhcCCCcccchhh
Q 015313          389 SLFKEYWKLPKESRTLS  405 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~  405 (409)
                      .+++||+|+|++|+++|
T Consensus      4075 ~v~~GY~~~~~~t~~~f 4091 (4334)
T PRK05691       4075 GVGRGYVGDPLRTALAF 4091 (4334)
T ss_pred             cccccccCCcccchhhc
Confidence            99999999999999885

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=4.8e-46  Score=365.53  Aligned_cols=358  Identities=20%  Similarity=0.275  Sum_probs=295.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|.+.++.+|+++|+.+.+..+||+||.++++++|..|.+.                 |+++|++|+++++|+.+
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~-----------------g~~~~~~v~~~~~~~~~   64 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSL-----------------KLPDKSPIIVFGHMSPE   64 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHH
Confidence            7899999999999999999999999999999999999999999995                 88999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+++|++++|+++..+.+++.++++..++++++++.+....      ................     .....
T Consensus        65 ~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~  133 (503)
T PRK04813         65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE------ILGIPVITLDELKDIF-----ATGNP  133 (503)
T ss_pred             HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc------ccCCcEEehHHhhhhh-----hcccc
Confidence            999999999999999999999999999999999999999998764100      0001111110000000     00000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++++|||||||.||+|.++|+++...+.+....+.+..+++++...|++|..+++ .++.++..|+++
T Consensus       134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~  212 (503)
T PRK04813        134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVM-DLYPTLASGGTL  212 (503)
T ss_pred             ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHH-HHHHHHhcCCEE
Confidence            0112234568899999999999999999999999999888888888889999999999999998875 478899999999


Q ss_pred             EEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      ++.+.   .++..+++.          +.++++|.+..+|.+++.+....        .....+++++|.++++|+++++
T Consensus       213 v~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~--------~~~~~~~~~l~~i~~~G~~l~~  274 (503)
T PRK04813        213 VALPKDMTANFKQLFET----------LPQLPINVWVSTPSFADMCLLDP--------SFNEEHLPNLTHFLFCGEELPH  274 (503)
T ss_pred             EEcChhhhcCHHHHHHH----------HHHcCCeEEEeChHHHHHHHHhh--------ccCcccCCCceEEEEecCcCCH
Confidence            99886   467777777          77799999999999998776541        1233467899999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccccC-----CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       318 ~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~-----~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      .+.+++.+.+ ++.+++.||+||++.......     .......++|.|.++++++|+|+++.+++.+ .|||+++|+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~  354 (503)
T PRK04813        275 KTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSV  354 (503)
T ss_pred             HHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEecccc
Confidence            9999999998 789999999999975443211     1123455799999999999999999988887 89999999999


Q ss_pred             hhhhcCCCcccchhh
Q 015313          391 FKEYWKLPKESRTLS  405 (409)
Q Consensus       391 ~~gY~~~~~~t~~~~  405 (409)
                      +.|||++|+.|.+.+
T Consensus       355 ~~gy~~~~~~~~~~~  369 (503)
T PRK04813        355 SKGYLNNPEKTAEAF  369 (503)
T ss_pred             ccccCCChhHhHHhh
Confidence            999999999998874

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-46  Score=370.81  Aligned_cols=362  Identities=20%  Similarity=0.299  Sum_probs=274.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~---------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (409)
                      |++.+.|++++..+|+++|+++.+         +.+||+||.+++.++|++|.+.                 | .+||+|
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~-----------------g-~~gd~V   62 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH-----------------G-STGDRA   62 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHh-----------------C-CCCCEE
Confidence            789999999999999999998632         6899999999999999999984                 7 589999


Q ss_pred             EEEeCCCHHHHHHHHHHHhhCcEEEeCCC---CCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC---C-ceeccC
Q 015313           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---A-KFSLIP  144 (409)
Q Consensus        72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~-~~~~~~  144 (409)
                      +++++|+++++++++||+++|++++|+++   ..+.+++.++++++++++++++++..+.+........   . ....+.
T Consensus        63 ~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (578)
T PRK05850         63 VILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD  142 (578)
T ss_pred             EEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec
Confidence            99999999999999999999999999986   4578899999999999999999887766554322111   0 011111


Q ss_pred             CCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc-c-----cCCCCeEEEec
Q 015313          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-E-----YTSADQFLHCL  218 (409)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~-----~~~~d~~l~~~  218 (409)
                      ... ..      .. .........++++++++|||||||.||+|.++|++++..+....... .     ...++++++.+
T Consensus       143 ~~~-~~------~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  214 (578)
T PRK05850        143 LLD-LD------SP-RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWL  214 (578)
T ss_pred             ccc-cc------cC-CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEEC
Confidence            000 00      00 00011234568999999999999999999999999988776654332 2     34578999999


Q ss_pred             CchhHHHHHHHHHHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHH-HHHhhhhhhHH
Q 015313          219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR-LIQGYEAMDTE  293 (409)
Q Consensus       219 pl~~~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~-l~~~~~~~~~~  293 (409)
                      |++|..|++..++.++..|+++++.+..    ++..+++.          ++++++++. .+|.++.. +......    
T Consensus       215 pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~----------i~~~~~~~~-~~p~~~~~~~~~~~~~----  279 (578)
T PRK05850        215 PFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQL----------LASNPHAFS-AAPNFAFELAVRKTSD----  279 (578)
T ss_pred             CCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHH----------HHHcCCeEE-eCCcHHHHHHHHhcch----
Confidence            9999999988899999999999998753    46677666          777899865 55655443 3332111    


Q ss_pred             HHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccCCCC----------------
Q 015313          294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRGA----------------  351 (409)
Q Consensus       294 ~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~~~~----------------  351 (409)
                       ......+++++|.+++||+++++++.++|.+.|+      ..+++.||+||++..+.......                
T Consensus       280 -~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~  358 (578)
T PRK05850        280 -DDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGH  358 (578)
T ss_pred             -hhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCc
Confidence             1112345678999999999999999999988773      36899999999875443211100                


Q ss_pred             ---------CCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          352 ---------RKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       352 ---------~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                               ....++|.|. +.+++|+|++ +++++.| .|||+++|++++.|||++|+.|++.+
T Consensus       359 ~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f  422 (578)
T PRK05850        359 AKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTF  422 (578)
T ss_pred             eEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHh
Confidence                     0011334443 5789999965 5777777 89999999999999999999999886

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-45  Score=367.68  Aligned_cols=365  Identities=20%  Similarity=0.288  Sum_probs=287.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      +|+.+.|.+.+..+|+++|++++.   +.+||+||.+++.++|.+|.+.                .|+++||+|+++++|
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~gd~V~~~~~n   73 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDE----------------LGITGDQRVGSMMYN   73 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            578899999999999999998753   6999999999999999999862                489999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCCCC------
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVS------  150 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------  150 (409)
                      +++++++++||+++|++++|+++..+.+++.++++.++++++|+++.....+.+........ .+++.......      
T Consensus        74 ~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  153 (576)
T PRK05620         74 CAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHM  153 (576)
T ss_pred             CHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhcc
Confidence            99999999999999999999999999999999999999999999988777666554433211 11111100000      


Q ss_pred             -C------Cccccc-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHH--HhhcccCCCCeEEEecCc
Q 015313          151 -S------ETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPL  220 (409)
Q Consensus       151 -~------~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl  220 (409)
                       .      .....+ ...........++++++++|||||||.||+|.++|+++.......  ...+.+..++++++.+|+
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl  233 (576)
T PRK05620        154 PEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPI  233 (576)
T ss_pred             ccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCCh
Confidence             0      000000 000011223456899999999999999999999999986544432  234677889999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313          221 HHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (409)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~  299 (409)
                      +|.+++.. .+.++..|+++++.. .+++..+++.          ++++++|.+.++|.++..++.....        ..
T Consensus       234 ~h~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~  294 (576)
T PRK05620        234 YHVLSWGV-PLAAFMSGTPLVFPGPDLSAPTLAKI----------IATAMPRVAHGVPTLWIQLMVHYLK--------NP  294 (576)
T ss_pred             HHhhhhHH-HHHHHhcCceEEecCCCCCHHHHHHH----------HHHhcCceeeecCHHHHHHHHHhhc--------cC
Confidence            99999854 778899999999876 4688888888          7789999999999999988765221        11


Q ss_pred             hhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC--------CCCccccccccCCeEEEEeeC
Q 015313          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--------ARKAGTVGNPLPGVQVKIAED  371 (409)
Q Consensus       300 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~--------~~~~~~~G~p~~~~~~~ivd~  371 (409)
                      ....++|.++.||+++++.+.++|.+.+++++++.||+||++.........        .....++|++.++++++|+|+
T Consensus       295 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~  374 (576)
T PRK05620        295 PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND  374 (576)
T ss_pred             cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC
Confidence            233579999999999999999999999999999999999998654321110        112347899999999999997


Q ss_pred             CCCCCC--Cc-cceEEEeCcchhhhhcCCCccc
Q 015313          372 ESGSDA--AG-VGEICVKSPSLFKEYWKLPKES  401 (409)
Q Consensus       372 ~~~~~~--~~-~Gel~v~g~~~~~gY~~~~~~t  401 (409)
                       ++.++  ++ .|||+++|++++.|||++|+.|
T Consensus       375 -g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t  406 (576)
T PRK05620        375 -GQVMESTDRNEGEIQVRGNWVTASYYHSPTEE  406 (576)
T ss_pred             -CccccCCCCCceEEEEEcCcccccccCCcccc
Confidence             66553  34 7999999999999999999988

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-46  Score=364.98  Aligned_cols=364  Identities=18%  Similarity=0.212  Sum_probs=280.6

Q ss_pred             HHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHH
Q 015313            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (409)
Q Consensus         8 ~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~   85 (409)
                      ..+++.+|+++|+++  +++.+||+||.++++++|+.|.+.                 |+++||+|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~-----------------gv~~gd~V~i~~~n~~~~~~~~   66 (501)
T PRK13390          4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDA-----------------GLRTGDVVALLSDNSPEALVVL   66 (501)
T ss_pred             chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHHHHHH
Confidence            356788999999987  368999999999999999999994                 8999999999999999999999


Q ss_pred             HHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhcc
Q 015313           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (409)
Q Consensus        86 ~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (409)
                      +||+++|++++|+++.++++++.++++.+++++++++................ ...+..  ..................
T Consensus        67 la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~  143 (501)
T PRK13390         67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPL-RLSFGG--EIDGFGSFEAALAGAGPR  143 (501)
T ss_pred             HHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccce-EEEecC--cccccccHHHHhcccCCC
Confidence            99999999999999999999999999999999999987654433332211111 011100  000000000000000011


Q ss_pred             CCCCCCcEEEEecCCCCCCCceeee--chHHHHHHH----HHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          166 GQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~----~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      ....++.++|+|||||||.||+|.+  +|.++....    ......+.+..+|++++.+|++|..++.. ....+..|++
T Consensus       144 ~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~  222 (501)
T PRK13390        144 LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGT  222 (501)
T ss_pred             CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCce
Confidence            1122357999999999999999995  455554321    11233567788999999999999998754 3345678999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.+++..+++.          ++++++|++.++|+++..+.+....      .....+++++|.++.||+++++++
T Consensus       223 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~~g~~~~~~~  286 (501)
T PRK13390        223 VVLAKRFDAQATLGH----------VERYRITVTQMVPTMFVRLLKLDAD------VRTRYDVSSLRAVIHAAAPCPVDV  286 (501)
T ss_pred             EEEcCCcCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccch------hcccCChhhhheEEEcCCCCCHHH
Confidence            999998999999988          7889999999999999988764211      112235678999999999999999


Q ss_pred             HHHHHHHhCCcccccccccccccccccc-CCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCC
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~-~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                      .+.+.+.++.++++.||+||+++++... .......+++|+|+++ .++|+|+++++++.| .|||+++|++++.|||++
T Consensus       287 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  365 (501)
T PRK13390        287 KHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLND  365 (501)
T ss_pred             HHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCC
Confidence            9999998899999999999998654322 2223456789999999 799999999998888 899999999999999999


Q ss_pred             Ccccchhh----cccC
Q 015313          398 PKESRTLS----SCLY  409 (409)
Q Consensus       398 ~~~t~~~~----~g~~  409 (409)
                      |++|++.+    +|||
T Consensus       366 ~~~t~~~~~~~~~~w~  381 (501)
T PRK13390        366 PEKTAAAQHPAHPFWT  381 (501)
T ss_pred             hhhhHHhhccCCCceE
Confidence            99998874    5685

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-45  Score=370.30  Aligned_cols=368  Identities=22%  Similarity=0.262  Sum_probs=290.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      .++.+.|.++++++|+++|++++++.+||+||+++++++|..|.+.                 |+++|++|+++++|+++
T Consensus        37 ~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~gd~V~i~~~n~~~   99 (600)
T PRK08279         37 RSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAAR-----------------GVGKGDVVALLMENRPE   99 (600)
T ss_pred             ccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEECCCCHH
Confidence            3688999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCC---CCCCcccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPN---VSSETTVF  156 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~  156 (409)
                      ++++++||+++|++++|+++..+.+++.++++.++++++|++++..+.+.......... .........   ........
T Consensus       100 ~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (600)
T PRK08279        100 YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLA  179 (600)
T ss_pred             HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHh
Confidence            99999999999999999999999999999999999999999998877766554433221 111111000   00000000


Q ss_pred             ------ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313          157 ------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       157 ------~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                            .............+++++|+|||||||.||+|.++|+++...+.+....++++++|++++.+|++|..+++..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~  259 (600)
T PRK08279        180 AAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW  259 (600)
T ss_pred             hhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHH
Confidence                  00001111223568999999999999999999999999999999988888999999999999999999998778


Q ss_pred             HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|.+++.+++....        ......++|.+  
T Consensus       260 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~l~~~l~~~~~~--------~~~~~~~l~~~--  319 (600)
T PRK08279        260 SSVLAAGATLALRRKFSASRFWDD----------VRRYRATAFQYIGELCRYLLNQPPK--------PTDRDHRLRLM--  319 (600)
T ss_pred             HHHHhcCcEEEEcCCCCHHHHHHH----------HHHhcceEEeehHHHHHHHHhCCCC--------ccccCcceeEE--
Confidence            888999999999999999999888          7789999999999999988875221        11134567754  


Q ss_pred             eCCCCCHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCccccccccC----CeE---------EEEeeCCCC--
Q 015313          311 GSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLP----GVQ---------VKIAEDESG--  374 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~----~~~---------~~ivd~~~~--  374 (409)
                      +|+.+++++.++|.+.++. .+++.||+||++......   ....+++|.+.+    +..         ..+.|.+++  
T Consensus       320 ~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (600)
T PRK08279        320 IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCI  396 (600)
T ss_pred             ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcCceeeCCCCccc
Confidence            4778999999999999976 699999999988654432   234557777655    332         233444443  


Q ss_pred             CCCCc-cceEE--EeCcchhhhhcCCCcccchhh--------cccC
Q 015313          375 SDAAG-VGEIC--VKSPSLFKEYWKLPKESRTLS--------SCLY  409 (409)
Q Consensus       375 ~~~~~-~Gel~--v~g~~~~~gY~~~~~~t~~~~--------~g~~  409 (409)
                      .++.| .|||+  ++|++++.|| ++|+.|++.+        ++||
T Consensus       397 ~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~  441 (600)
T PRK08279        397 KVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWF  441 (600)
T ss_pred             cCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceE
Confidence            35556 79998  7899999999 9999888763        5786

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=6.1e-45  Score=362.10  Aligned_cols=373  Identities=16%  Similarity=0.242  Sum_probs=285.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +|+.+.+.+.++.+|+++|+++....+||+||.++++++|..|.+                 +|+++||+|+++++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~   82 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAK-----------------RSIGPGSTVAVIAPNIPA   82 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence            356788899999999999999998999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC---------CceeccCCCCCCC-
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---------AKFSLIPPVPNVS-  150 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-  150 (409)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++++..+..........         ...+.+....... 
T Consensus        83 ~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (567)
T PLN02479         83 MYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK  162 (567)
T ss_pred             HHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence            999999999999999999999999999999999999999999887665544322111         0111111100000 


Q ss_pred             C--------Cccccc---cchh--hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEe
Q 015313          151 S--------ETTVFD---QSQA--EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC  217 (409)
Q Consensus       151 ~--------~~~~~~---~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~  217 (409)
                      .        .....+   ....  ........++.++++|||||||.||+|.++|+++..........+++..++++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  242 (567)
T PLN02479        163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWT  242 (567)
T ss_pred             ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence            0        000000   0000  00011223467789999999999999999999987766666666778889999999


Q ss_pred             cCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHH
Q 015313          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (409)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~  297 (409)
                      +|++|..++...+...+..|.+++ +..+++..+++.          ++++++|++.++|.++..+.++...       .
T Consensus       243 ~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~-------~  304 (567)
T PLN02479        243 LPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSA----------IANYGVTHFCAAPVVLNTIVNAPKS-------E  304 (567)
T ss_pred             cchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhhhhh-------c
Confidence            999999987654444556666554 567889999988          7889999999999999998765211       1


Q ss_pred             hhhhhccceEEEeeCCCCCHHHHHHHHHHhCCcccccccccccccccccc---C-------CC-CCCccccccccCCeE-
Q 015313          298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP---L-------RG-ARKAGTVGNPLPGVQ-  365 (409)
Q Consensus       298 ~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~---~-------~~-~~~~~~~G~p~~~~~-  365 (409)
                      ....+++++.++++|+++++.+.++|.+. +.++++.||+||+++.+...   +       .. .....+.|.+.+++. 
T Consensus       305 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~  383 (567)
T PLN02479        305 TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEG  383 (567)
T ss_pred             ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCc
Confidence            11246889999999999999999998876 88999999999986543211   0       00 011235788888875 


Q ss_pred             EEEeeC-CCCCCCC--c-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          366 VKIAED-ESGSDAA--G-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       366 ~~ivd~-~~~~~~~--~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++|+|+ ++++++.  + .|||+++|++++.|||++|+.|++. .+|||
T Consensus       384 ~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~  432 (567)
T PLN02479        384 LDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWF  432 (567)
T ss_pred             eeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCce
Confidence            899994 4666653  2 6999999999999999999999998 68887

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.8e-46  Score=431.46  Aligned_cols=356  Identities=22%  Similarity=0.333  Sum_probs=299.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++.+||++|++++++.+||+||.++++++|+.|.+.                 |+++|++|++++++++++
T Consensus      1132 ~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~i~~~~s~~~ 1194 (4334)
T PRK05691       1132 WLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDK-----------------GVGPDVCVAIAAERSPQL 1194 (4334)
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            478899999999999999999999999999999999999999995                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++|++++|++++|+++.++.+++.+++++++++++|++++....+....   ........... ..      .....
T Consensus      1195 iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~-~~------~~~~~ 1264 (4334)
T PRK05691       1195 LVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE---GVSAIALDSLH-LD------SWPSQ 1264 (4334)
T ss_pred             HHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc---CceEEeecccc-cc------ccCCC
Confidence            9999999999999999999999999999999999999999987654332210   11111111000 00      00000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++++|||||||.||||.++|+++.+.+.+....++++++|+++...|++|..+++ .++.+|..|++++
T Consensus      1265 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~ 1343 (4334)
T PRK05691       1265 APGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVW-ECFWPLITGCRLV 1343 (4334)
T ss_pred             CCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHhCCCEEE
Confidence            111234578999999999999999999999999999999988889999999999999999988875 5899999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+++.          ++++++|++.++|++++.+.+..          ....+++||.+++||++++++
T Consensus      1344 i~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~----------~~~~~~~lr~~~~gGe~l~~~ 1403 (4334)
T PRK05691       1344 LAGPGEHRDPQRIAEL----------VQQYGVTTLHFVPPLLQLFIDEP----------LAAACTSLRRLFSGGEALPAE 1403 (4334)
T ss_pred             EcCccccCCHHHHHHH----------HHHcCCeEEECcHHHHHHHHhCc----------ccccCCcccEEEEeecCCCHH
Confidence            9863   567788877          78899999999999999987641          123578899999999999999


Q ss_pred             HHHHHHHHh-CCcccccccccccccccccc--CCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313          319 VMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (409)
Q Consensus       319 ~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~--~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY  394 (409)
                      +.++|.+.+ +++++|.||+||+++.++..  ........++|+|+++++++|+|+++++++.| +|||+++|+++++||
T Consensus      1404 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY 1483 (4334)
T PRK05691       1404 LRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGY 1483 (4334)
T ss_pred             HHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhh
Confidence            999999988 68999999999998655432  12233456899999999999999999999998 899999999999999


Q ss_pred             cCCCcccchhh
Q 015313          395 WKLPKESRTLS  405 (409)
Q Consensus       395 ~~~~~~t~~~~  405 (409)
                      +|+|+.|++.|
T Consensus      1484 l~~p~~t~~~f 1494 (4334)
T PRK05691       1484 LGRPALTAERF 1494 (4334)
T ss_pred             cCCccccHhhC
Confidence            99999999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-45  Score=361.56  Aligned_cols=371  Identities=19%  Similarity=0.290  Sum_probs=288.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--C--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRA--D--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~--~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +++.+.|+.+++++||++++..  +  .+++||+||.++++++|++|.+.                 |+++||+|+++++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~-----------------g~~~gd~v~i~~~   72 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRD-----------------GIKLGDRVATIAW   72 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            4678999999999999999985  2  36899999999999999999995                 8999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-Cce-eccCCCCCCCCCc-
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKF-SLIPPVPNVSSET-  153 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-  153 (409)
                      |+++++++++||+++|++++|+++..+.+++.++++.++++.++++.++.+.+........ ... ..+.......... 
T Consensus        73 ~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (542)
T PRK06018         73 NTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTL  152 (542)
T ss_pred             CchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCc
Confidence            9999999999999999999999999999999999999999999999887776665543322 111 1111111100000 


Q ss_pred             ----cccc---c-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHH-H-HHHHHHhhcccCCCCeEEEecCchhH
Q 015313          154 ----TVFD---Q-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID-A-QVQMLTEAWEYTSADQFLHCLPLHHV  223 (409)
Q Consensus       154 ----~~~~---~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~-~-~~~~~~~~~~~~~~d~~l~~~pl~~~  223 (409)
                          ...+   . ..........++++++++|||||||.||+|.+||++.+ . ........+++..+|+++...|++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        153 KNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHA  232 (542)
T ss_pred             cccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHH
Confidence                0000   0 00001123356789999999999999999999999743 2 22333456678889999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhh
Q 015313          224 HGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (409)
Q Consensus       224 ~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~  302 (409)
                      .++.. .+.++..|+++++.. .+++..+++.          ++++++|++.++|+++..+.+..+.        ...++
T Consensus       233 ~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~  293 (542)
T PRK06018        233 NSWGI-AFSAPSMGTKLVMPGAKLDGASVYEL----------LDTEKVTFTAGVPTVWLMLLQYMEK--------EGLKL  293 (542)
T ss_pred             hhhHH-HHhhhhcCceEEccCcCCCHHHHHHH----------HHhcCCceeecCcHHHHHHHhcccc--------cCCCc
Confidence            88754 567789999998864 4677888887          7789999999999999999875332        12356


Q ss_pred             ccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCccccccccCCeEEEEeeC
Q 015313          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAED  371 (409)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----------~~~~~~~G~p~~~~~~~ivd~  371 (409)
                      +++|.+++||+++++++.++|++ +++++++.||+||++.+.......           .....++|+|.++++++|+|+
T Consensus       294 ~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~  372 (542)
T PRK06018        294 PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD  372 (542)
T ss_pred             ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC
Confidence            78999999999999999999999 899999999999998654422100           012357899999999999999


Q ss_pred             CCCCCCC--c-cceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          372 ESGSDAA--G-VGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       372 ~~~~~~~--~-~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      +++.++.  + .|||+++|++++.|||++.. .....+|||
T Consensus       373 ~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~-~~~~~~~~~  412 (542)
T PRK06018        373 AGKELPWDGKTFGRLKVRGPAVAAAYYRVDG-EILDDDGFF  412 (542)
T ss_pred             CCCCCCCCCCceeEEEEecCCcchhhhcCcc-cEecCCcEE
Confidence            9987754  2 69999999999999999432 222256776

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-45  Score=361.90  Aligned_cols=369  Identities=19%  Similarity=0.279  Sum_probs=285.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~---~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      +++.+.|..+++.+|+.+++..++   +.+||.||+.++.++|..|.+.                 |+++||+|+++++|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~-----------------gi~~gd~V~l~~~n   83 (579)
T PRK09192         21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLAL-----------------GLKPGDRVALIAET   83 (579)
T ss_pred             hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCC
Confidence            367899999999998887664332   6799999999999999999984                 89999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCC-------hHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (409)
                      +++++++++||+++|++++|+++..+       .+++.++++.+++++++++++..+.+........... . .......
T Consensus        84 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~  161 (579)
T PRK09192         84 DGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH-V-LSHAWFK  161 (579)
T ss_pred             chhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccc-e-eehhhhc
Confidence            99999999999999999999976443       5789999999999999999887766655432221111 0 0000000


Q ss_pred             CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh-hcccCCCCeEEEecCchhHHHHHHH
Q 015313          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFLHCLPLHHVHGLFNA  229 (409)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~~~~g~~~~  229 (409)
                      ..   .  ......+...++++++++|||||||.||+|.++|+++...+..... .+++..+|+++..+|++|..+++..
T Consensus       162 ~~---~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~  236 (579)
T PRK09192        162 AL---P--EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGF  236 (579)
T ss_pred             cc---C--CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHH
Confidence            00   0  0001112345689999999999999999999999999998887777 7888999999999999999999877


Q ss_pred             HHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 015313          230 LLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (409)
Q Consensus       230 ~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~l  305 (409)
                      ++.++..|+++++.+.    .++..+++.          +.+++++.++..|.++..+......     ......+++++
T Consensus       237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~l  301 (579)
T PRK09192        237 LLTPVATQLSVDYLPTRDFARRPLQWLDL----------ISRNRGTISYSPPFGYELCARRVNS-----KDLAELDLSCW  301 (579)
T ss_pred             HHHHHHhCCeeEeeCHHHHHHCHHHHHHH----------HHhcCcEEEeCCcHHHHHHHHhhcc-----ccccccchhhh
Confidence            8888999999987663    246667776          7789999877766555554432111     11223567899


Q ss_pred             eEEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccCCCC----------------------------
Q 015313          306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRGA----------------------------  351 (409)
Q Consensus       306 r~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~~~~----------------------------  351 (409)
                      |.+++||+++++.+.+++.+.++      ..+++.||+||+++.+.......                            
T Consensus       302 r~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (579)
T PRK09192        302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRV  381 (579)
T ss_pred             heeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccc
Confidence            99999999999999999988873      35899999999976544322110                            


Q ss_pred             CCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          352 RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       352 ~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      ....++|+|+|+++++|+|++++.++.+ .|||+++|+++++|||++ +.+.+.  .||||
T Consensus       382 ~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~  441 (579)
T PRK09192        382 RTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWL  441 (579)
T ss_pred             eeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCcee
Confidence            1135789999999999999999888877 899999999999999999 556555  58887

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=9.5e-45  Score=387.95  Aligned_cols=367  Identities=21%  Similarity=0.324  Sum_probs=288.8

Q ss_pred             hHHHHHHHhcccCC-CeeEEEe-CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMAR-DSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~-~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.+.+.++++| +++|+.+ +++++||+||+++++++|+.|.+                  |+++||+|+++++|++
T Consensus       632 ~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~------------------g~~~gd~V~i~~~n~~  693 (1140)
T PRK06814        632 TLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK------------------NTPPGENVGVMLPNAN  693 (1140)
T ss_pred             CHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEEcCCch
Confidence            35667777888876 6788776 46899999999999999999975                  8899999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHH--HHhhccC--CceeccCCCCCCCC-Ccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSG--AKFSLIPPVPNVSS-ETT  154 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~-~~~  154 (409)
                      +++++++||+++|++++|+++..+.+++.++++++++++++++++..+...  .......  ...+.+........ ...
T Consensus       694 ~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  773 (1140)
T PRK06814        694 GAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADK  773 (1140)
T ss_pred             HHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHH
Confidence            999999999999999999999999999999999999999999987654321  1111111  11111111100000 000


Q ss_pred             ccc----cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313          155 VFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       155 ~~~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                      ...    .......+...++|+++++|||||||.||+|.++|+++..........++.+++|++++.+|++|..++...+
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~  853 (1140)
T PRK06814        774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGL  853 (1140)
T ss_pred             HHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHH
Confidence            000    0000001124678999999999999999999999999999888888888899999999999999999997778


Q ss_pred             HHHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEE
Q 015313          231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~  309 (409)
                      +.++..|+++++.+. .+...+.+.          ++++++|++.++|++++.+.+..          ...+++++|.++
T Consensus       854 ~~~l~~G~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~----------~~~~~~~lr~v~  913 (1140)
T PRK06814        854 VLPLLSGVKVFLYPSPLHYRIIPEL----------IYDTNATILFGTDTFLNGYARYA----------HPYDFRSLRYVF  913 (1140)
T ss_pred             HHHHHcCCEEEEecCcccHHHHHHH----------HHhcCCEEEEecHHHHHHHHhhc----------ccccccceeEEE
Confidence            899999999998874 345555565          77899999999999999887641          234578899999


Q ss_pred             eeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcc
Q 015313          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPS  389 (409)
Q Consensus       310 ~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~  389 (409)
                      +||+++++++.+.+.+.+++++++.||+||++..+........+.+++|+|+|+++++++|.++.   ++.|||+++|++
T Consensus       914 ~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~---~~~Gel~v~g~~  990 (1140)
T PRK06814        914 AGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGI---DEGGRLFVRGPN  990 (1140)
T ss_pred             EcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCC---CCceEEEEeCCC
Confidence            99999999999999999999999999999998765543333456779999999999999886531   236999999999


Q ss_pred             hhhhhcCCCcccch--hhcccC
Q 015313          390 LFKEYWKLPKESRT--LSSCLY  409 (409)
Q Consensus       390 ~~~gY~~~~~~t~~--~~~g~~  409 (409)
                      ++.|||++++.+..  ..||||
T Consensus       991 ~~~gY~~~~~~~~~~~~~~g~~ 1012 (1140)
T PRK06814        991 VMLGYLRAENPGVLEPPADGWY 1012 (1140)
T ss_pred             cchhhcCCCCCCccccCCCCeE
Confidence            99999998764432  258897

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-44  Score=354.68  Aligned_cols=366  Identities=18%  Similarity=0.204  Sum_probs=287.6

Q ss_pred             HHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHH
Q 015313            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (409)
Q Consensus         8 ~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~   85 (409)
                      ..+++.+||++|+++  .++.+||.||.+++.++|+.|.+.                 |+++|++|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~-----------------g~~~~~~V~v~~~~~~~~~~~~   66 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSL-----------------GLKRGDHVAIFMENNLRYLEVC   66 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHHHHHH
Confidence            467788999999987  577899999999999999999994                 8899999999999999999999


Q ss_pred             HHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCCCCccccccchhh-
Q 015313           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQAE-  162 (409)
Q Consensus        86 ~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-  162 (409)
                      +||+++|++++|+++..+.+++.++++.++++.++++......+..........  .+..................... 
T Consensus        67 ~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (511)
T PRK13391         67 WAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLP  146 (511)
T ss_pred             HHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCC
Confidence            999999999999999999999999999999999999987766655544333211  11111100000000000000000 


Q ss_pred             hccCCCCCCcEEEEecCCCCCCCceeee--chHHHHH---HHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          163 KMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~---~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      .......++.++++|||||||.||+|.+  +|.++..   ........+.+.+++++++..|++|..++. ..+.++..|
T Consensus       147 ~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g  225 (511)
T PRK13391        147 ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLG  225 (511)
T ss_pred             CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcC
Confidence            0111233467899999999999999995  4555432   233344566778899999999999998885 467789999


Q ss_pred             CEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      +++++.+.+++..+++.          ++++++|++.++|.++..+.+....      .....+++++|.+++||+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~~~~gg~~~~~  289 (511)
T PRK13391        226 GTVIVMEHFDAEQYLAL----------IEEYGVTHTQLVPTMFSRMLKLPEE------VRDKYDLSSLEVAIHAAAPCPP  289 (511)
T ss_pred             ceEEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCchh------hcccCCccceeEEEEccCCCCH
Confidence            99999999999999988          7889999999999999988764211      1123457899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhc
Q 015313          318 PVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (409)
Q Consensus       318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~  395 (409)
                      ++.+++.+.+|..+++.||+||++++..... ......+++|+|+++ .++|+|+++++++.| .|||+++|+ ++.|||
T Consensus       290 ~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~  367 (511)
T PRK13391        290 QVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEGG-RPFEYL  367 (511)
T ss_pred             HHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecC-cceEEc
Confidence            9999999988999999999999987654322 223456789999999 699999999888888 799999999 888999


Q ss_pred             CCCcccchhhc---ccC
Q 015313          396 KLPKESRTLSS---CLY  409 (409)
Q Consensus       396 ~~~~~t~~~~~---g~~  409 (409)
                      ++|+.+++.++   |||
T Consensus       368 ~~~~~~~~~~~~~~~w~  384 (511)
T PRK13391        368 NDPAKTAEARHPDGTWS  384 (511)
T ss_pred             CChhHhHHhhccCCCEE
Confidence            99999988743   886

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-44  Score=352.52  Aligned_cols=367  Identities=21%  Similarity=0.310  Sum_probs=285.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +|+.+.|.+.++++||++|+.++++.+||.||.++++++|++|.+                 +|+++||+|+++++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~~~~v~v~~~n~~~   65 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIA-----------------QGLGPGDHVGIYARNRIE   65 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578999999999999999999999999999999999999999998                 489999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCC------CC
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS------SE  152 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~  152 (409)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++.+....+.++.......  .+.+.......      ..
T Consensus        66 ~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (533)
T PRK07798         66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDY  145 (533)
T ss_pred             HHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccH
Confidence            99999999999999999999999999999999999999999988777766654432211  11111111000      00


Q ss_pred             ccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---------cc------CCCCeEEEe
Q 015313          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---------EY------TSADQFLHC  217 (409)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---------~~------~~~d~~l~~  217 (409)
                      ..................+.++++|||||||.||+|+++|+++..........+         ..      ..+++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            000000000111112234557999999999999999999999976554432211         11      466899999


Q ss_pred             cCchhHHHHHHHHHHHHhcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHH-HHHhhhhhhHHH
Q 015313          218 LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR-LIQGYEAMDTEL  294 (409)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~-l~~~~~~~~~~~  294 (409)
                      +|++|..+++ .++.++..|+++++.+  .+++..+++.          ++++++|.+.++|..+.. +.+.+.      
T Consensus       226 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~~------  288 (533)
T PRK07798        226 PPLMHGAGQW-AAFAALFSGQTVVLLPDVRFDADEVWRT----------IEREKVNVITIVGDAMARPLLDALE------  288 (533)
T ss_pred             cchhhhhhHH-HHHHHHhcCceEEEecCCCcCHHHHHHH----------HHHhCCeEEEechHHHHHHHHHHhc------
Confidence            9999999996 5889999999999999  7889999888          777999999999876643 443322      


Q ss_pred             HHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccCCCCCCccccc--cccCCeEEEEeeC
Q 015313          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVG--NPLPGVQVKIAED  371 (409)
Q Consensus       295 ~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G--~p~~~~~~~ivd~  371 (409)
                       .....+++++|.+++||+++++++.+++.+.+ +..+++.||+||++.........  .....|  .+.++..++|+|+
T Consensus       289 -~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~~  365 (533)
T PRK07798        289 -ARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLDE  365 (533)
T ss_pred             -ccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEECC
Confidence             11234678999999999999999999999988 78999999999997554432211  112333  7788999999999


Q ss_pred             CCCCCCCc-c--ceEEEeCcchhhhhcCCCcccchhh
Q 015313          372 ESGSDAAG-V--GEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       372 ~~~~~~~~-~--Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                      ++++++.| .  |+| ++++.++.|||++|+.|++.+
T Consensus       366 ~~~~~~~g~~~~g~l-~~~~~~~~gy~~~~~~t~~~f  401 (533)
T PRK07798        366 DGNPVEPGSGEIGWI-ARRGHIPLGYYKDPEKTAETF  401 (533)
T ss_pred             CCCCCCCCCCCeeEE-EeecCccccccCChhhhHHhh
Confidence            99988776 4  555 567789999999999998875

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8.1e-44  Score=350.04  Aligned_cols=357  Identities=23%  Similarity=0.319  Sum_probs=281.7

Q ss_pred             eEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEe
Q 015313           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (409)
Q Consensus        18 ~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~   97 (409)
                      .|++.+++.+||.||.++++++|+.|.+.                 |+++|++|+++++|+++++++++||+++|+++++
T Consensus         3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~-----------------g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~   65 (509)
T PRK12406          3 ATIISGDRRRSFDELAQRAARAAGGLAAL-----------------GVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP   65 (509)
T ss_pred             eEEEECCeeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            47778889999999999999999999994                 8999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC-------------CCc-cccccc-hhh
Q 015313           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-------------SET-TVFDQS-QAE  162 (409)
Q Consensus        98 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~-~~~  162 (409)
                      +++..+.+++.++++++++++++++.+....+...... ....+.........             ... ...+.. ...
T Consensus        66 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (509)
T PRK12406         66 VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPA-GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE  144 (509)
T ss_pred             cCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhc-ccceeecccccccccccccccccccCCCCccCHHHHhcccC
Confidence            99999999999999999999999998766554332211 11111111000000             000 000000 000


Q ss_pred             hccCCCCCCcEEEEecCCCCCCCceeeechHHH---HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI---DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      .......+++++++|||||||.||+|.++|...   ..........+++..++++++.+|++|..+... .+.++..|++
T Consensus       145 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~  223 (509)
T PRK12406        145 PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGV  223 (509)
T ss_pred             ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheE
Confidence            112235689999999999999999999876554   333334455677889999999999999888765 4456889999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.+++..+++.          ++++++|.+.++|.++..+++....      .....+++++|.++.||+++++++
T Consensus       224 ~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~~~~~~~  287 (509)
T PRK12406        224 LVLQPRFDPEELLQL----------IERHRITHMHMVPTMFIRLLKLPEE------VRAKYDVSSLRHVIHAAAPCPADV  287 (509)
T ss_pred             EEEccCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCchh------hcccCCCCceeEEEEcCCCCCHHH
Confidence            999988899999888          7889999999999999998764221      112345789999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccccC-CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh-hhcC
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK-EYWK  396 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~-gY~~  396 (409)
                      .+++.+.+++.+++.||+||++.+++... +....++++|.|+++++++|+|+++++++.| .|||+++|++++. ||++
T Consensus       288 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~  367 (509)
T PRK12406        288 KRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHN  367 (509)
T ss_pred             HHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccC
Confidence            99999999999999999999997665432 2234567899999999999999999888888 8999999998875 9999


Q ss_pred             CCcccchh-hcccC
Q 015313          397 LPKESRTL-SSCLY  409 (409)
Q Consensus       397 ~~~~t~~~-~~g~~  409 (409)
                      +|+.+++. .||||
T Consensus       368 ~~~~~~~~~~~~~~  381 (509)
T PRK12406        368 KPEKRAEIDRGGFI  381 (509)
T ss_pred             CchhcccccCCCCe
Confidence            99998887 88887

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-43  Score=351.12  Aligned_cols=372  Identities=19%  Similarity=0.239  Sum_probs=284.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      |+..+.|++.++.+|+++|+.+.+..+||+||.++++++|..|.+                 .|+++||+|+++++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~   80 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALAR-----------------RGIGRGDTVAVLLPNIPA   80 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCchH
Confidence            567789999999999999999999999999999999999999998                 489999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc-eeccCCCCCCC---------
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVS---------  150 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------  150 (409)
                      ++++++||+++|++++|+++..+.+++.++++.++++.++++.+....+.+........ ...+.......         
T Consensus        81 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (545)
T PRK08162         81 MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL  160 (545)
T ss_pred             HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccc
Confidence            99999999999999999999999999999999999999999998877665543332221 11111110000         


Q ss_pred             CCccccccc-hhhh-ccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 015313          151 SETTVFDQS-QAEK-MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (409)
Q Consensus       151 ~~~~~~~~~-~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  228 (409)
                      ......... .... ....+.+++++++|||||||.||+|.++|+++..........+.+..++++++.+|++|..++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~  240 (545)
T PRK08162        161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF  240 (545)
T ss_pred             cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence            000000000 0000 01123457899999999999999999999988766666566667888899999999999998765


Q ss_pred             HHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEE
Q 015313          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (409)
Q Consensus       229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v  308 (409)
                      .++. .+.|++.++...+++..+++.          ++++++|++.++|.++..|++....        ....+...+.+
T Consensus       241 ~~~~-~~~~g~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~~~~~  301 (545)
T PRK08162        241 PWTV-AARAGTNVCLRKVDPKLIFDL----------IREHGVTHYCGAPIVLSALINAPAE--------WRAGIDHPVHA  301 (545)
T ss_pred             HHHH-HHHccEEEEeCCCCHHHHHHH----------HHHcCCeEEEechHHHHHHHhCccc--------cccCCccceEE
Confidence            4443 445666666677899999998          7889999999999999999875221        11223456677


Q ss_pred             EeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCccccccccCC-eEEEEeeC-CCCC
Q 015313          309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPG-VQVKIAED-ESGS  375 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----------~~~~~~~G~p~~~-~~~~ivd~-~~~~  375 (409)
                      +++|+++++++.+.+.+. ++++++.||+||+++....+...           .....++|.+.+. ..++|+|+ ++++
T Consensus       302 ~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~  380 (545)
T PRK08162        302 MVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQP  380 (545)
T ss_pred             EECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcc
Confidence            899999999999988764 89999999999986543322100           1123456766543 36889995 5666


Q ss_pred             CCC-c--cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          376 DAA-G--VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       376 ~~~-~--~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++. |  .|||+++|+.++.|||++++.|++. .+|||
T Consensus       381 ~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~  418 (545)
T PRK08162        381 VPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWF  418 (545)
T ss_pred             cCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCc
Confidence            654 3  5999999999999999999999988 67897

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=4.2e-44  Score=342.43  Aligned_cols=333  Identities=24%  Similarity=0.386  Sum_probs=272.9

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHH
Q 015313           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (409)
Q Consensus        28 Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~  107 (409)
                      ||.||.+.++++|+.|.+.                .|+++||+|+++++|+++++++++||+.+|++++|+++..+.+++
T Consensus         1 t~~~l~~~~~~~a~~l~~~----------------~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~   64 (408)
T TIGR01733         1 TYRELDERANRLARHLRAA----------------GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERL   64 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHH
Confidence            7999999999999999983                389999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCce
Q 015313          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (409)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  187 (409)
                      .++++++++++++++++....+.....    ....+........ ...  ............+++++++|||||||.||+
T Consensus        65 ~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~  137 (408)
T TIGR01733        65 AFILEDAGARLLLTDSALASRLAGLVL----PIILVDPLELAAL-DDA--PAPPPPDAPSGPDDLAYVIYTSGSTGRPKG  137 (408)
T ss_pred             HHHHHhcCCCEEEEcCchhhhccccCC----ceEEechhhhhhc-ccc--cccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence            999999999999999876655433211    1111110000000 000  000000111346889999999999999999


Q ss_pred             eeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcch---HHHHHHHHhhcCCCCC
Q 015313          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGN  264 (409)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~---~~~~~~~~~~~~~~~~  264 (409)
                      |.++|+++..........+....+|++++..|++|..+++ .++.++..|+++++.++...   ..+.+.          
T Consensus       138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~----------  206 (408)
T TIGR01733       138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAAL----------  206 (408)
T ss_pred             EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------
Confidence            9999999999999888888888999999999999999985 58999999999999887544   555555          


Q ss_pred             CccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC-Ccccccccccccccc
Q 015313          265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMA  343 (409)
Q Consensus       265 i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~g~~  343 (409)
                      ++++++|.+.++|.+++.+.+...           ..++++|.+++||+++++++.+++.+.++ +.+++.||+||++.+
T Consensus       207 ~~~~~~t~l~~~p~~~~~l~~~~~-----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~  275 (408)
T TIGR01733       207 IAEHPVTVLNLTPSLLALLAAALP-----------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW  275 (408)
T ss_pred             HHHcCceEEEeCHHHHHHHHHhhh-----------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEE
Confidence            777899999999999999987521           46789999999999999999999999997 899999999999876


Q ss_pred             ccccC---CCCC--CccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          344 ISNPL---RGAR--KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       344 ~~~~~---~~~~--~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                      +....   ....  ...++|.|.++++++|+|++++.++.| .|||+++|++++.||+++|+.|++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  343 (408)
T TIGR01733       276 STATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERF  343 (408)
T ss_pred             EEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcce
Confidence            64211   1111  267899999999999999998888887 89999999999999999999998773

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-44  Score=348.98  Aligned_cols=356  Identities=19%  Similarity=0.218  Sum_probs=280.0

Q ss_pred             eEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEe
Q 015313           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (409)
Q Consensus        18 ~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~   97 (409)
                      .++.+.++.+||.||.+.+.++|+.|.+.                 |+++||+|+++++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~   65 (502)
T PRK08276          3 VIMAPSGEVVTYGELEARSNRLAHGLRAL-----------------GLREGDVVAILLENNPEFFEVYWAARRSGLYYTP   65 (502)
T ss_pred             eEecCCCcEEEHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEe
Confidence            45566789999999999999999999995                 8999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--CceeccCCCCCCCCCccccccch-hhhccCCCCCCcEE
Q 015313           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPAL  174 (409)
Q Consensus        98 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  174 (409)
                      +++..+.+++.++++++++++++++++....+.+......  ........... .......+... .........++.++
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~  144 (502)
T PRK08276         66 INWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPV-PGFRSYEEALAAQPDTPIADETAGAD  144 (502)
T ss_pred             cccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCC-CccccHHHHHhcCCCCCCCCCCcceE
Confidence            9999999999999999999999999887766655443322  11111111100 00000000000 01111234567899


Q ss_pred             EEecCCCCCCCceeeechHHHHHHH------HHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcch
Q 015313          175 IVYTSGTTGKPKGVVHTHKSIDAQV------QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (409)
Q Consensus       175 i~~TSGtTG~pK~v~~t~~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~  248 (409)
                      ++|||||||.||+|.++|.++....      ...........++++++..|++|..++.. .+.++..|+++++.+.+++
T Consensus       145 i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~  223 (502)
T PRK08276        145 MLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDA  223 (502)
T ss_pred             EEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCH
Confidence            9999999999999999988765332      11222222346789999999999998865 4578999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC
Q 015313          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~  328 (409)
                      ..+++.          ++++++|++.++|+++..+++.....      ....+++++|.+++||++++.++.+.+.+.++
T Consensus       224 ~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~  287 (502)
T PRK08276        224 EEALAL----------IERYRVTHSQLVPTMFVRMLKLPEEV------RARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG  287 (502)
T ss_pred             HHHHHH----------HHHhCCeEEEehHHHHHHHHhCcccc------CCCCCcccceEEEecCCCCCHHHHHHHHHHhC
Confidence            999888          78899999999999999998752211      12346789999999999999999999999999


Q ss_pred             Cccccccccccccccccc-cCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchhh-
Q 015313          329 HRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS-  405 (409)
Q Consensus       329 ~~v~~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~-  405 (409)
                      ..+++.||+||++.+++. ........+++|+|+ ++.++|+|+++++++.| .|||+++|++++.|||++|+++++.+ 
T Consensus       288 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  366 (502)
T PRK08276        288 PIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN  366 (502)
T ss_pred             cHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhc
Confidence            999999999999875543 222234567899999 88999999988888887 89999999999999999999999883 


Q ss_pred             -cccC
Q 015313          406 -SCLY  409 (409)
Q Consensus       406 -~g~~  409 (409)
                       ||||
T Consensus       367 ~~~~~  371 (502)
T PRK08276        367 PHGWV  371 (502)
T ss_pred             CCCce
Confidence             3887

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-43  Score=343.14  Aligned_cols=331  Identities=24%  Similarity=0.332  Sum_probs=273.0

Q ss_pred             ChHHHHH-HHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            1 MEVFKAA-YKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         1 ~~~~~~l-~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      |++.+.+ ...++.+|+++|++++++.+||.||.++++++|..|.+.                 |+.+|++|+++++|++
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------g~~~~~~v~l~~~~~~   64 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQ-----------------GVVEGSGVALRGKNSP   64 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEecCCCH
Confidence            3445555 445788999999999999999999999999999999995                 8899999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (409)
                      +++++++||+++|++++|+++..+.+++.++++++++++++++++... +... ..     ....        ..     
T Consensus        65 ~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-~~-----~~~~--------~~-----  124 (458)
T PRK09029         65 ETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL-TS-----LHLQ--------LV-----  124 (458)
T ss_pred             HHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc-cc-----cccc--------cc-----
Confidence            999999999999999999999999999999999999999999876422 1110 00     0000        00     


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCE
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (409)
                      .........++++++++|||||||.||+|.++|++++..+......++...+|+++..+|++|.+++. .++.++..|++
T Consensus       125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~  203 (458)
T PRK09029        125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGAT  203 (458)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhH-HHHHHHhCCce
Confidence            00111234578899999999999999999999999999998888888899999999999999999985 46778999999


Q ss_pred             EEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +++.+.   ..+++.          +  .++|.+..+|+++..++.....            ..++|.+++||+++++.+
T Consensus       204 v~~~~~---~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~~------------~~~l~~i~~gG~~~~~~~  256 (458)
T PRK09029        204 LVVRDK---QPLEQA----------L--AGCTHASLVPTQLWRLLDNRSE------------PLSLKAVLLGGAAIPVEL  256 (458)
T ss_pred             EEeCCh---HHHHHH----------H--hhceeeecChHHHHHHHhcccc------------CCcceEEEECCCCCCHHH
Confidence            998775   344444          3  3789999999999988765211            346999999999999999


Q ss_pred             HHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCc
Q 015313          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK  399 (409)
Q Consensus       320 ~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~  399 (409)
                      .+++.+. ++++++.||+||++...+....  ....++|+|+++++++|+|          |||+++|++++.|||++|+
T Consensus       257 ~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~----------gel~v~g~~~~~gY~~~~~  323 (458)
T PRK09029        257 TEQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD----------GEIWLRGASLALGYWRQGQ  323 (458)
T ss_pred             HHHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC----------CEEEEecCceeeeeecCcc
Confidence            9988765 9999999999999865543322  2234699999999999987          8999999999999999999


Q ss_pred             ccchh-hcccC
Q 015313          400 ESRTL-SSCLY  409 (409)
Q Consensus       400 ~t~~~-~~g~~  409 (409)
                      .+... .+|||
T Consensus       324 ~~~~~~~~~~~  334 (458)
T PRK09029        324 LVPLVNDEGWF  334 (458)
T ss_pred             ccccccCCCcc
Confidence            98765 68887

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-43  Score=346.35  Aligned_cols=366  Identities=21%  Similarity=0.287  Sum_probs=284.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|..++..+|+.++++..  .+.+||.||+++++++|++|.+.                 |+++||+|+|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~gd~V~l~~~~~~   65 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAA-----------------GVGPGDAVAVLAGAPV   65 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCch
Confidence            5678899999999999999664  46899999999999999999994                 9999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHH-------HHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCC
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESEL-------LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (409)
                      +++++++||+++|++++|+++..+.+++       .++++.++++.+++++........+. ..+.....+.....    
T Consensus        66 ~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~l~~----  140 (545)
T PRK07768         66 EIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-EKGIRVLTVADLLA----  140 (545)
T ss_pred             HHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-ccCCceeehhhhcc----
Confidence            9999999999999999999988776544       45677889999999876654433321 11111111111100    


Q ss_pred             ccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCC-CeEEEecCchhHHHHHHHHH
Q 015313          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~~~~g~~~~~~  231 (409)
                           .. ........++++++++|||||||.||+|.++|+++...+.......++... |++++.+|++|..+++..++
T Consensus       141 -----~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  214 (545)
T PRK07768        141 -----AD-PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT  214 (545)
T ss_pred             -----cC-CCCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence                 00 001223457899999999999999999999999999988887777777776 89999999999999877677


Q ss_pred             HHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceE
Q 015313          232 APLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (409)
Q Consensus       232 ~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~  307 (409)
                      .++..|+++++....    ++..+++.          +++++++++.+.|.++..+.+.+....    .....+++++|.
T Consensus       215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~lr~  280 (545)
T PRK07768        215 VPMYFGAELVKVTPMDFLRDPLLWAEL----------ISKYRGTMTAAPNFAYALLARRLRRQA----KPGAFDLSSLRF  280 (545)
T ss_pred             HHHHCCceEEEeCHHHHHHhHHHHHHH----------HHHhCCEEEECchHHHHHHHHHHhccc----cccCCCchheee
Confidence            889999999988642    45555665          788999999888888777665432111    011346788999


Q ss_pred             EEeeCCCCCHHHHHHHHHH---hCC---ccccccccccccccccccCCC--------------------------CCCcc
Q 015313          308 MMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLRG--------------------------ARKAG  355 (409)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~---~~~---~v~~~YG~tE~g~~~~~~~~~--------------------------~~~~~  355 (409)
                      ++.+|+++++.+.+.+.+.   ++.   .+++.||+||++..+......                          ....+
T Consensus       281 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (545)
T PRK07768        281 ALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLA  360 (545)
T ss_pred             EEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEE
Confidence            9999999999999998875   555   489999999998654322111                          12356


Q ss_pred             ccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          356 TVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       356 ~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ++|+|+++++++|+|+++++++.+ .|||+++|+.++.|||+++...... .+|||
T Consensus       361 ~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  416 (545)
T PRK07768        361 TLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWL  416 (545)
T ss_pred             eccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCcccccCCCee
Confidence            899999999999999999888877 8999999999999999977655544 57786

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=5.8e-42  Score=330.48  Aligned_cols=305  Identities=20%  Similarity=0.259  Sum_probs=243.1

Q ss_pred             cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccC-CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCCh
Q 015313           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE  104 (409)
Q Consensus        26 ~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~-~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~  104 (409)
                      -+.|+||.++++++|++|.+.                 |+ ++|++|+++++|+++++++++||+++|++++|+++.++.
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~-----------------g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~   81 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQL-----------------ATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQ   81 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHh-----------------cCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCH
Confidence            478999999999999999995                 76 579999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCC
Q 015313          105 SELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK  184 (409)
Q Consensus       105 ~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  184 (409)
                      +++.++++++++++++++.+.....             ..   ..       ..    ......+++.++++|||||||.
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~---~~-------~~----~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         82 QEWQQVLNLVQPDQIWGLDQLKLSH-------------PP---PL-------PS----QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             HHHHHHHHhcCCCEEEecCcccccc-------------CC---CC-------Cc----cccCCCCCCcEEEEeCCCCCCC
Confidence            9999999999999999986532110             00   00       00    0011345889999999999999


Q ss_pred             CceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCC
Q 015313          185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN  264 (409)
Q Consensus       185 pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~  264 (409)
                      ||+|.+||+++...+......++..+ ++.++.+|++|.+|+. .++.++..|+++++.+..........          
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~----------  202 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQEL----------  202 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhh----------
Confidence            99999999999988887777666654 4678899999999985 47889999999999874322222112          


Q ss_pred             CccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccc
Q 015313          265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI  344 (409)
Q Consensus       265 i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~  344 (409)
                      ..+++++++.++|.+++.+.+.           ....++++|.+++||+++++++.+++.+ +++++++.||+||++..+
T Consensus       203 ~~~~~~t~~~~vP~~l~~l~~~-----------~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~  270 (452)
T PRK07445        203 PPNPSDFFLSLVPTQLQRLLQL-----------RPQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQI  270 (452)
T ss_pred             hhhcCceEEEehHHHHHHHHhh-----------ChhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccc
Confidence            3457899999999999998762           1124678999999999999999998876 489999999999987544


Q ss_pred             cc-cCC-CCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          345 SN-PLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       345 ~~-~~~-~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      .. .+. .....+++|+|+|+++++|+       ++..|||+++||+++.|||+++..    .+|||
T Consensus       271 ~~~~~~~~~~~~~~~G~~~p~~~v~i~-------~g~~Gel~v~g~~~~~gY~~~~~~----~~g~~  326 (452)
T PRK07445        271 ATLKPDDFLAGNNSSGQVLPHAQITIP-------ANQTGNITIQAQSLALGYYPQILD----SQGIF  326 (452)
T ss_pred             cccCchhhccCCCcCCccCCCCeEEEc-------CCCcceEEEeCCccchhhcCCccC----CCCEE
Confidence            32 221 12345689999999999998       122699999999999999997642    35665

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-41  Score=354.71  Aligned_cols=357  Identities=15%  Similarity=0.183  Sum_probs=270.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.+.++.+||++|++++++.+||+||.++++++|+.|.+                 +|+++||+|+|+++|+++
T Consensus       447 ~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~-----------------~Gv~~Gd~VaI~~~n~~e  509 (994)
T PRK07868        447 ISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIA-----------------VGVRQGDRVGVLMETRPS  509 (994)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCC----------CC
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN----------VS  150 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  150 (409)
                      ++++++||+++|++++|+++.   +++.++++.++++++|++++..+.+...    ...++++.....          ..
T Consensus       510 ~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~~~iiv~~~~~~~~~~~~~~~~~~  582 (994)
T PRK07868        510 ALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----PGRVLVLGGGESRDLDLPDDADVI  582 (994)
T ss_pred             HHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----CceEEEecCCccccccCCcchhhh
Confidence            999999999999999999985   6799999999999999998776654332    122222211000          00


Q ss_pred             CCccccccchh----hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHH
Q 015313          151 SETTVFDQSQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (409)
Q Consensus       151 ~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  226 (409)
                      ...........    .......++++++|+|| ||||.||++.++|.+...........+++..+|++++.+|++|..++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl  661 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGL  661 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHH
Confidence            00000000000    00111235889999998 57777777777887766555455566778899999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccce
Q 015313          227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (409)
Q Consensus       227 ~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr  306 (409)
                      +..++..+..|+++++.+.+++..+++.          ++++++|+++++|+++..+++...        ....++++||
T Consensus       662 ~~~l~~~l~gG~~vvl~~~~~~~~~~~~----------I~~~~vT~~~~~Ps~l~~L~~~~~--------~~~~~~~slr  723 (994)
T PRK07868        662 LVSLGGAVVGGSRIALSRGLDPDRFVQE----------VRQYGVTVVSYTWAMLREVVDDPA--------FVLHGNHPVR  723 (994)
T ss_pred             HHHHHHHhccceEEEecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcC--------CccCCCCceE
Confidence            7656677777888888888999999998          788999999999999999987411        1223567899


Q ss_pred             EEEeeCCCCCHHHHHHHHHHhC-CccccccccccccccccccCCCCCCccccccccCCe-EEEEe-----------eCCC
Q 015313          307 LMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV-QVKIA-----------EDES  373 (409)
Q Consensus       307 ~v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~-~~~iv-----------d~~~  373 (409)
                      .++  |+.+++++.+++.+.++ +++++.||+||++.+.....  ..+.+++|+|+|++ +++|.           |++|
T Consensus       724 ~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~--~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G  799 (994)
T PRK07868        724 LFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVS--GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRG  799 (994)
T ss_pred             EEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccccC--CCCCcccCCccCCCCceeEEEecCcCCceeecCCc
Confidence            876  33499999999999986 79999999999876544322  24567999999997 67664           4555


Q ss_pred             --CCCCCc-cceEEEeCcchhhhhcCCCcccchh-----hcccC
Q 015313          374 --GSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-----SSCLY  409 (409)
Q Consensus       374 --~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-----~~g~~  409 (409)
                        +.++.| .|||+++|+..    + +|+.+...     .||||
T Consensus       800 ~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~  838 (994)
T PRK07868        800 FVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWI  838 (994)
T ss_pred             eEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEE
Confidence              445556 89999999853    3 45544321     27887

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-41  Score=310.41  Aligned_cols=363  Identities=21%  Similarity=0.235  Sum_probs=286.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC--ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~--~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      ++.+.|..+++++|+|+|+++.+  +++||+|+++.++++|+.|..+                 |++.||.|+|.|+|++
T Consensus        78 ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~-----------------~l~~GD~VAL~men~p  140 (649)
T KOG1179|consen   78 TIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAE-----------------GLKAGDVVALLMENRP  140 (649)
T ss_pred             cHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHh-----------------hcccCCEEEEecCCCh
Confidence            67899999999999999999977  6999999999999999999996                 8899999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc---eeccCCCCCCCCCccc-
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK---FSLIPPVPNVSSETTV-  155 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  155 (409)
                      ||+..+++++++|++...||++...+-+.|.+..++++.+|++++....+.++.+.....   ................ 
T Consensus       141 efv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~  220 (649)
T KOG1179|consen  141 EFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLL  220 (649)
T ss_pred             hHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHH
Confidence            999999999999999999999999999999999999999999999988777764433222   1111111111100011 


Q ss_pred             ---cccch---h-hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH
Q 015313          156 ---FDQSQ---A-EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (409)
Q Consensus       156 ---~~~~~---~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  228 (409)
                         .....   + ......+..++++.+|||||||.||+.+++|.............++++++|+++.++|++|.+|.+.
T Consensus       221 ~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~il  300 (649)
T KOG1179|consen  221 AKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGIL  300 (649)
T ss_pred             HhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHH
Confidence               11111   1 1223445678999999999999999999999999888877888899999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEE
Q 015313          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (409)
Q Consensus       229 ~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v  308 (409)
                      ++..++..|+|+++-.+|+...+|+.          ..+|++|++.-.--+++.+++....        ....-+++|+.
T Consensus       301 Gi~~~l~~GaT~VlrkKFSAS~FW~D----------C~k~~~Tv~QYIGElcRYLl~~p~~--------~~er~HkVRla  362 (649)
T KOG1179|consen  301 GIGGCLLHGATVVLRKKFSASNFWDD----------CRKYNVTVIQYIGELCRYLLNQPPS--------PEERQHKVRLA  362 (649)
T ss_pred             HHHHHHhcCceEEEecccchhhhHHH----------HHHhCCeeeehHHHHHHHHHcCCCC--------hhhcCceEEEE
Confidence            99999999999999999999999999          7779999999999999999987432        23345678887


Q ss_pred             EeeCCCCCHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCcccccc------ccCCeE-EEE--------eeCC
Q 015313          309 MCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGN------PLPGVQ-VKI--------AEDE  372 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~------p~~~~~-~~i--------vd~~  372 (409)
                      +  |..+-+++++.|.+.||+ ++.+.||+||......+.+.   +.+.+|.      -+.-++ +|.        .|++
T Consensus       363 ~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~---~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~  437 (649)
T KOG1179|consen  363 Y--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDG---RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQ  437 (649)
T ss_pred             e--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecC---ccccccchhhhhhhccceEEEEecCCCCceeecCC
Confidence            7  777899999999999987 58999999998876655432   2333332      111222 333        3333


Q ss_pred             CC--CCCCc-cceEEEe----Cc-chhhhhcCCCcccchh
Q 015313          373 SG--SDAAG-VGEICVK----SP-SLFKEYWKLPKESRTL  404 (409)
Q Consensus       373 ~~--~~~~~-~Gel~v~----g~-~~~~gY~~~~~~t~~~  404 (409)
                      |-  ++++| .|.+.-+    .| .-|.||.+++++|++.
T Consensus       438 G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kK  477 (649)
T KOG1179|consen  438 GLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKK  477 (649)
T ss_pred             ceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhh
Confidence            31  23444 6655333    44 4499999999988876

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.3e-41  Score=322.12  Aligned_cols=320  Identities=27%  Similarity=0.382  Sum_probs=258.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHH
Q 015313           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (409)
Q Consensus        28 Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~  107 (409)
                      ||+||.++++++|+.|.+.                 |+++||+|+++++|+++++++++||+++|++++|+++..+.+++
T Consensus         1 Ty~~l~~~~~~~a~~l~~~-----------------g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~   63 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQ-----------------GIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENER   63 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHH
Confidence            8999999999999999994                 99999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCce
Q 015313          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (409)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  187 (409)
                      ..++++.+++++++++......   ..     ...+.......      . ...........+++++++|||||||.||+
T Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~---~~-----~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        64 TNQLEDLDVQLLLTDSLLEEKD---FQ-----ADSLDRIEAAG------R-YETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             HHHHHhcCCCEEEEcCcccccc---ee-----ecchHhhhhcc------c-ccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            9999999999999987632100   00     00000000000      0 00001122356789999999999999999


Q ss_pred             eeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCcc
Q 015313          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG  267 (409)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~  267 (409)
                      |.++|+++...+......++.+++|++++.+|++|..++. .++.++..|+++++.+.++  .+++.          +++
T Consensus       129 v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~--~~~~~----------l~~  195 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFN--QLLEM----------IAN  195 (436)
T ss_pred             EEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchHH--HHHHH----------HHH
Confidence            9999999999998888888999999999999999999885 5889999999999988764  66666          788


Q ss_pred             ccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCcccccccccccccccccc
Q 015313          268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP  347 (409)
Q Consensus       268 ~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~  347 (409)
                      +++|++.++|.++..+++...           . .+++|.+++||+++++++.+.+.+ +++++++.||+||++......
T Consensus       196 ~~~t~~~~~P~~l~~l~~~~~-----------~-~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~  262 (436)
T TIGR01923       196 ERVTHISLVPTQLNRLLDEGG-----------H-NENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTA  262 (436)
T ss_pred             hCCeEEEeHHHHHHHHHhCcC-----------C-CCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCc
Confidence            999999999999999887521           1 167999999999999999988876 499999999999998655432


Q ss_pred             CC-CCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313          348 LR-GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       348 ~~-~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      .. ......++|.|+++++++|.+++..    +.|||+++|+.++.|||++++.+... .+|||
T Consensus       263 ~~~~~~~~~~~G~~~~~~~~~i~~~~~~----~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  322 (436)
T TIGR01923       263 TPEMLHARPDVGRPLAGREIKIKVDNKE----GHGEIMVKGANLMKGYLYQGELTPAFEQQGWF  322 (436)
T ss_pred             CccccccccCCCccCCCcEEEEEeCCCC----CceEEEEECCccchhhCCChhhhhhhhcCCCe
Confidence            21 1122224899999999999443321    56999999999999999999888776 57887

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.5e-41  Score=329.89  Aligned_cols=315  Identities=18%  Similarity=0.167  Sum_probs=235.2

Q ss_pred             eCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH------HHHHHHHhhccCCceeccCCCCC
Q 015313           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY------REVLQNVASKSGAKFSLIPPVPN  148 (409)
Q Consensus        75 ~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  148 (409)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+..+........+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998642      12222221111111111110000


Q ss_pred             ---------CCCCcccc---ccc-----hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCC
Q 015313          149 ---------VSSETTVF---DQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA  211 (409)
Q Consensus       149 ---------~~~~~~~~---~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  211 (409)
                               ........   ...     .........++++++|+|||||||.||||.+||++++.........++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                     00000000   000     0000111245899999999999999999999999988766655666778889


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       212 d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      |++++.+|++|..++. .++.++..|+++++.+. +++..+++.          ++++++|++.++|+++..|++.... 
T Consensus       161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~----------i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKF----------VQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             CEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHH----------HHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            9999999999999975 58889999999999874 677888888          7889999999999999998764210 


Q ss_pred             hHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh--CCcccccccccccccccc-ccCCCCCCccccccccCCeEEE
Q 015313          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVK  367 (409)
Q Consensus       291 ~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~tE~g~~~~-~~~~~~~~~~~~G~p~~~~~~~  367 (409)
                           .....++++||.+++||+++++++.+++++.+  ++++++.||+||++.... .........+++|+|.++++++
T Consensus       229 -----~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  303 (499)
T PLN03051        229 -----AMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFV  303 (499)
T ss_pred             -----ccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEE
Confidence                 01234678999999999999999998777743  478999999999864332 2222234567899999999999


Q ss_pred             EeeCCCCCCCCc---cceEEEeCcch--hhhhcCCCcccchhhcc
Q 015313          368 IAEDESGSDAAG---VGEICVKSPSL--FKEYWKLPKESRTLSSC  407 (409)
Q Consensus       368 ivd~~~~~~~~~---~Gel~v~g~~~--~~gY~~~~~~t~~~~~g  407 (409)
                      |+|++|++++.|   +|||+++||.+  +.||||++ .++..++|
T Consensus       304 ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g  347 (499)
T PLN03051        304 LLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKG  347 (499)
T ss_pred             EECCCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeec
Confidence            999999988776   59999999976  58999875 35444667

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=6.8e-40  Score=342.62  Aligned_cols=356  Identities=13%  Similarity=0.108  Sum_probs=262.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC---C--ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD---Q--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~---~--~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      ++.+.|.+.++++|+++|+...   +  +++||+|+.++++++|++|.+                 +|+++||+|+|+++
T Consensus       428 Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-----------------lGV~~GDrVaIls~  490 (1452)
T PTZ00297        428 SLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-----------------LGVRPGDVIGVDCE  490 (1452)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            6788999999999999999731   2  679999999999999999999                 59999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCce-eccCCCCCCC-----
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF-SLIPPVPNVS-----  150 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----  150 (409)
                      |+++|+++++||+++|++++|+++  +.+++.++++.++++++|++.+....+...... .... +.+.......     
T Consensus       491 N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~-~Lr~IIv~d~~~~~~~~~~~  567 (1452)
T PTZ00297        491 ASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSR-KLETVVYTHSFYDEDDHAVA  567 (1452)
T ss_pred             CCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhccc-CCcEEEEECCCccccccccc
Confidence            999999999999999999999975  467899999999999999998877766654332 2222 2222100000     


Q ss_pred             --------CCccccccc---hhhhccCCCCCCcEEEEe---cCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCe
Q 015313          151 --------SETTVFDQS---QAEKMDGQRGEDPALIVY---TSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQ  213 (409)
Q Consensus       151 --------~~~~~~~~~---~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~  213 (409)
                              .........   .........++|++.|+|   ||||||.||||++||+|++..+.......   ...++|+
T Consensus       568 ~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~  647 (1452)
T PTZ00297        568 RDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHL  647 (1452)
T ss_pred             ccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCE
Confidence                    000000000   001112336788999986   99999999999999999999888765432   3467899


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHH
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE  293 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~  293 (409)
                      +++.+|++|+++... .+.++..|+++.+   +++..+++.          +++++||+++++|.+++.+.+.+......
T Consensus       648 ~Ls~LPLaHI~er~~-~~~~l~~G~~I~~---~d~~~lled----------L~~~rPTv~~~VPrv~ekI~~~i~~~~~~  713 (1452)
T PTZ00297        648 MVHFTPFAMLFNRVF-VLGLFAHGSAVAT---VDAAHLQRA----------FVKFQPTILVAAPSLFSTSRLQLSRANER  713 (1452)
T ss_pred             EEEechHHHHHHHHH-HHHHHHcCCEEEe---CCHHHHHHH----------HHHHCCEEEEecHHHHHHHHHHHHHHhhh
Confidence            999999999999754 6777999999975   357778887          78899999999999999987765322111


Q ss_pred             ----------------------------------HHHHhhhhhccceEEEeeCC--CCCHHHHHHHHHHhCCcccccccc
Q 015313          294 ----------------------------------LQAASASAAKQLRLMMCGSS--ALPLPVMQQWETITGHRLLERYGM  337 (409)
Q Consensus       294 ----------------------------------~~~~~~~~~~~lr~v~~gG~--~~~~~~~~~~~~~~~~~v~~~YG~  337 (409)
                                                        ....+.....++|.+++||+  +++..+.      .++++..+||+
T Consensus       714 ~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~------~~i~i~~g~gl  787 (1452)
T PTZ00297        714 YSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL------EHISVCYVPCL  787 (1452)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh------CCceEEEecce
Confidence                                              00112223468999999974  4443332      26788899999


Q ss_pred             ccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcccchhhcccC
Q 015313          338 TEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       338 tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      ||+.  ..+.+.. .  ...|.|+|++++||.|.+.....+..|||+++       |++||++|++..+||+
T Consensus       788 TE~~--~~~~~~~-~--~~~G~PlpgvEvKI~~~~E~~~~~~~GEIlvr-------~~kdpe~T~e~~~gW~  847 (1452)
T PTZ00297        788 REVF--FLPSEGV-F--CVDGTPAPSLQVDLEPFDEPSDGAGIGQLVLA-------KKGEPRRTLPIAAQWK  847 (1452)
T ss_pred             EEee--eecCCCC-c--ccCCeecCceEEEEcccccccCCCCCCeEEEE-------ECCChHHHHHhhCcCc
Confidence            9953  2232222 2  23499999999999974321112336999996       4699999999889996

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-39  Score=306.90  Aligned_cols=289  Identities=21%  Similarity=0.275  Sum_probs=247.8

Q ss_pred             EEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeC
Q 015313           19 AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL   98 (409)
Q Consensus        19 a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i   98 (409)
                      +++++++++||.||.++++++|+.|..                  ++++|++|+++++|+++++++++|++++|++++|+
T Consensus         1 ~~~~~~~~~ty~el~~~~~~~a~~l~~------------------~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l   62 (414)
T PRK08308          1 MLIVNDEEYSKSDFDLRLQRYEEMEQF------------------QEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPI   62 (414)
T ss_pred             CeEecCceecHHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEec
Confidence            467888999999999999999999853                  88999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCCCcEEEEec
Q 015313           99 ALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT  178 (409)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  178 (409)
                      ++..+.+++..++++++++++++++....               ..   .               .....++++++++||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~~---~---------------~~~~~~~~~~~i~~T  109 (414)
T PRK08308         63 HPDTPKEAAIRMAKRAGCHGLLYGESDFT---------------KL---E---------------AVNYLAEEPSLLQYS  109 (414)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEecCcccc---------------cc---c---------------CCCCCCCCceEEEEC
Confidence            99999999999999999999999763110               00   0               012345789999999


Q ss_pred             CCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhh
Q 015313          179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES  258 (409)
Q Consensus       179 SGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~  258 (409)
                      |||||.||+|.++|+++...+......+....+|+.+..+|++|.++++..++.++..|+++++.+.+++..+++.    
T Consensus       110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----  185 (414)
T PRK08308        110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI----  185 (414)
T ss_pred             CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----
Confidence            9999999999999999999888888888888899999999999999988889999999999999999899988888    


Q ss_pred             cCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccc
Q 015313          259 YPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT  338 (409)
Q Consensus       259 ~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t  338 (409)
                            ++++++|.++++|.++..+.+....            ..+++.++.||+++++++.+++++. +.++++.||+|
T Consensus       186 ------l~~~~~t~~~~~P~~~~~l~~~~~~------------~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~t  246 (414)
T PRK08308        186 ------LRNTPQHILYAVPLMLHILGRLLPG------------TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCS  246 (414)
T ss_pred             ------HHHhCCeEEEcCHHHHHHHHhcCCc------------cccccEEEEccCCCCHHHHHHHHHh-CChhhhccCcc
Confidence                  7779999999999999998764211            1368899999999999999999887 67899999999


Q ss_pred             cccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCc
Q 015313          339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSP  388 (409)
Q Consensus       339 E~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~  388 (409)
                      |++++.....  ....+++|+|+|++++++.++++     +.|||++++.
T Consensus       247 E~~~~~~~~~--~~~~~~~G~p~~~~~~~~~~~~~-----~~gel~v~~~  289 (414)
T PRK08308        247 EAGCVSICPD--MKSHLDLGNPLPHVSVSAGSDEN-----APEEIVVKMG  289 (414)
T ss_pred             ccCCeeecCC--CCCCCccCccCCCeEEEEecCCC-----CCceEEEEcC
Confidence            9986554322  23457899999999999986432     3599999865

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-39  Score=308.71  Aligned_cols=358  Identities=24%  Similarity=0.335  Sum_probs=286.5

Q ss_pred             CCCeeEEEeC------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHHHHHH
Q 015313           14 ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG   87 (409)
Q Consensus        14 ~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~~~~A   87 (409)
                      .+|++|+++.      ...+||.|+.+++.++|+.|..                 +|+++||+|++++|+.++++++++|
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-----------------~g~~kGD~V~~~mPm~~e~~ia~lA  140 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-----------------CGLKKGDTVAIYMPMIPEAVIAMLA  140 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-----------------cCCCCCcEEEEeccCChHHHHHHHH
Confidence            4888888873      3458999999999999999996                 6999999999999999999999999


Q ss_pred             HHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHH---------HHHHhhccCCc------eeccCCCCCCCCC
Q 015313           88 TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---------LQNVASKSGAK------FSLIPPVPNVSSE  152 (409)
Q Consensus        88 ~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~------~~~~~~~~~~~~~  152 (409)
                      |.++|++.+++-..++++++...++.++++++++.....+.         +.+........      ............+
T Consensus       141 ~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~  220 (626)
T KOG1175|consen  141 CARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFW  220 (626)
T ss_pred             HhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccH
Confidence            99999999999999999999999999999999998743322         11111111100      0000000000011


Q ss_pred             ccc-cccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHH-HHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313          153 TTV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID-AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                      ... ........+...+.+|+.+|+|||||||.||++.+++.... ..+.....++..++.|++.+.....++.+.++..
T Consensus       221 ~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~  300 (626)
T KOG1175|consen  221 SLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVL  300 (626)
T ss_pred             HHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhh
Confidence            111 11112222555678999999999999999999998887544 5566666778999999999999999999999988


Q ss_pred             HHHHhcCCEEEEccC--cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEE
Q 015313          231 LAPLYAGATVEFMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v  308 (409)
                      +.+|++|+|+++.+.  +++..+++.          +.+|++|.+++.|+.++.+.+....      ......+++||.+
T Consensus       301 ~gpl~~Ga~~vl~~g~p~~~~~~~~~----------v~k~~it~l~t~pt~~r~l~~~~~~------~~~~~~~~sLk~~  364 (626)
T KOG1175|consen  301 YGPLLNGATVVLYEGPPFDPGRIWKI----------LDKYKVTVLYTAPTAYRLLRRLGQE------DVTSYSLKSLRTC  364 (626)
T ss_pred             hhhhhcCcEEEEEcCCCCChhhhhhh----------HhhcceEEEEeccHHHHHHHHhccc------cccccccceEEEE
Confidence            899999999999985  467888887          8899999999999999988775332      2233344789999


Q ss_pred             EeeCCCCCHHHHHHHHHHhCC-ccccccccccccccccccCCC--CCCccccccccCCeEEEEeeCCCCCCCC--ccceE
Q 015313          309 MCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEI  383 (409)
Q Consensus       309 ~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~~--~~~~~~~G~p~~~~~~~ivd~~~~~~~~--~~Gel  383 (409)
                      .++|+++.++..+.+.+.++. +|++.||+||+|+.+..+...  +-++++.+.|.+|+.+.|.|++|+.+++  +.|+|
T Consensus       365 ~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l  444 (626)
T KOG1175|consen  365 GSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGEL  444 (626)
T ss_pred             eecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEE
Confidence            999999999999999999977 699999999999877755443  4889999999999999999999999877  58999


Q ss_pred             EEeC--c-chhhhhcCCCcccchh
Q 015313          384 CVKS--P-SLFKEYWKLPKESRTL  404 (409)
Q Consensus       384 ~v~g--~-~~~~gY~~~~~~t~~~  404 (409)
                      +++.  | +.+++||+|++..+++
T Consensus       445 ~~~~~~P~~~~r~~~~n~erf~~~  468 (626)
T KOG1175|consen  445 RLKPPWPPGMFRTLWGNHERFRAA  468 (626)
T ss_pred             EEeCCCCccccccccCCHHHhhhh
Confidence            9997  3 7899999999966555

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4e-33  Score=281.66  Aligned_cols=358  Identities=23%  Similarity=0.334  Sum_probs=286.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|...+...|++.|+.+.+.++||+++..+++++|+.|.+.                 |+.+++.|+++.+.++++
T Consensus       228 ~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~-----------------g~~~~~~V~i~~~rs~~~  290 (642)
T COG1020         228 TIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL-----------------GVGPGETVAILADRSLEL  290 (642)
T ss_pred             hHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEcCCCHHH
Confidence            578899999999999999999999999999999999999999994                 889999999999889999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      ++.++|++++|+.++|+++.++.+.+..+++.++++.+++...........    ..  .....  ....   . . ...
T Consensus       291 i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~--~~~~---~-~-~~~  357 (642)
T COG1020         291 VVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL----PG--LALDD--ALSE---I-P-DTD  357 (642)
T ss_pred             HHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC----Cc--ccccc--cccc---C-C-ccC
Confidence            999999999999999999999999999999999999999984322110000    00  00000  0000   0 0 000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......+++.++++|||||||.||||..+|+++.+.+.+....+..+..|+++...++++.... ..++.++..|++++
T Consensus       358 ~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~  436 (642)
T COG1020         358 PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASV-FEIFGALLEGARLV  436 (642)
T ss_pred             cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEE
Confidence            00123345899999999999999999999999999988888888899999999999999766665 46999999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+.+.          +.++++|.+..+|.++..+......      .......+.+|.+.+||+.++.+
T Consensus       437 ~~~~~~~~~~~~l~~~----------~~~~~vt~~~~~p~~~~~~~~~~~~------~~~~~~~~~lr~~~~gGe~l~~~  500 (642)
T COG1020         437 LAPALLQVDPAALLEL----------LEAQGITVLLLVPLLLRLLLLAALA------PDLISPCERLRQLLSGGEALPLA  500 (642)
T ss_pred             ecCccccCCHHHHHHH----------HHHcCCEEEEecHHHHHHHHhchhh------ccccCCcccccEEEEcCCCCCHH
Confidence            9985   456666666          6779999999999999988874110      01112233599999999999999


Q ss_pred             HHHHHHHHh--CCccccccccccccccccccCCCCCC--ccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhh
Q 015313          319 VMQQWETIT--GHRLLERYGMTEFVMAISNPLRGARK--AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (409)
Q Consensus       319 ~~~~~~~~~--~~~v~~~YG~tE~g~~~~~~~~~~~~--~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~g  393 (409)
                      +..++....  ...+.+.||.||+.............  ...+|.|+++..++|.|..++.++.+ .||+++.|.+++.|
T Consensus       501 ~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~g  580 (642)
T COG1020         501 LVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALG  580 (642)
T ss_pred             HHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhh
Confidence            999988876  46899999999966544322111111  45899999999999999888999999 79999999999999


Q ss_pred             hcCCCcccchhhc
Q 015313          394 YWKLPKESRTLSS  406 (409)
Q Consensus       394 Y~~~~~~t~~~~~  406 (409)
                      |+++|+.|.+.|-
T Consensus       581 y~~~p~lt~~~f~  593 (642)
T COG1020         581 YLNRPDLTAERFI  593 (642)
T ss_pred             hcCChhhhHHHhh
Confidence            9999999998853

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=2.1e-26  Score=216.25  Aligned_cols=201  Identities=26%  Similarity=0.390  Sum_probs=163.2

Q ss_pred             CCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEE---
Q 015313          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF---  242 (409)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~---  242 (409)
                      ...++++++++|||||||.||+|.++|+++...+......+  ...++++..+|++|..++.. ++.++..|++.++   
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCc
Confidence            44568999999999999999999999999998877665543  35578999999999999854 7788999999887   


Q ss_pred             ccCcchHHHHHHHHhhcCCCCCCcccc--ceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          243 MPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      ...+++..+++.          +++++  .++...+|.++..++....         ...+++++|.+++||+++++++.
T Consensus       108 ~~~~~~~~~~~~----------i~~~~~~~~~~~~~p~~l~~~~~~~~---------~~~~~~~l~~i~~gG~~l~~~~~  168 (358)
T PRK07824        108 SAGFDPTALPRA----------VAELGGGRRYTSLVPMQLAKALDDPA---------ATAALAELDAVLVGGGPAPAPVL  168 (358)
T ss_pred             CCCcCHHHHHHH----------HHHhCCCceEEEecHHHHHHHHhCcc---------ccCCcccceEEEECCCCCCHHHH
Confidence            345788888887          55565  5667778888776655311         22357899999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCcc
Q 015313          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKE  400 (409)
Q Consensus       321 ~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~  400 (409)
                      +++.+ +++++++.||+||++..+.          ..|.|+++++++|.|          |||+++|+.++.||+|+++.
T Consensus       169 ~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~----------Gei~v~g~~~~~gY~~~~~~  227 (358)
T PRK07824        169 DAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED----------GRIALGGPTLAKGYRNPVDP  227 (358)
T ss_pred             HHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC----------CEEEEecCccccccCCCccc
Confidence            98876 4999999999999875432          358999999999954          99999999999999999987


Q ss_pred             cchhhcccC
Q 015313          401 SRTLSSCLY  409 (409)
Q Consensus       401 t~~~~~g~~  409 (409)
                      +.-..+|||
T Consensus       228 ~~~~~~g~~  236 (358)
T PRK07824        228 DPFAEPGWF  236 (358)
T ss_pred             ccccCCCce
Confidence            654478887

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=3.3e-26  Score=198.89  Aligned_cols=207  Identities=18%  Similarity=0.168  Sum_probs=156.5

Q ss_pred             HHHhcccCCCeeEEEe--C----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            7 AYKKGSMARDSVAIRA--D----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         7 l~~~~~~~~~~~a~~~--~----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      |...++++|+++|+++  +    ++++||+||.++++++|+.|++.                .|+++||+|+|+++|+++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~Gv~~GdrV~i~~~n~~~   65 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDE----------------LDAEPGSRVALDLPAHWQ   65 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHH
Confidence            4667788999999974  2    23699999999999999999972                389999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceecc-----CCC---CCCCCC
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI-----PPV---PNVSSE  152 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~  152 (409)
                      ++++++|++++|++++|++             .++++++|++++..+.+...     .....+     ...   ......
T Consensus        66 ~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  127 (227)
T TIGR03089        66 TAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAGS-----GEVVALSLDPLGRRVAGELPPGV  127 (227)
T ss_pred             HHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcccC-----CceEEEeccccccCCCCCCCCcc
Confidence            9999999999999999995             68899999998877664311     111111     000   000000


Q ss_pred             ccccccch----hhhcc-CCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 015313          153 TTVFDQSQ----AEKMD-GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (409)
Q Consensus       153 ~~~~~~~~----~~~~~-~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  227 (409)
                      ........    ..... ...++|++.++||||+         +|++++...    ...+++++|+++ .+|++|..|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~  193 (227)
T TIGR03089       128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFL  193 (227)
T ss_pred             cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHH
Confidence            11111111    01111 3356899999999985         566655544    455788999999 99999999998


Q ss_pred             HHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccce
Q 015313          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT  271 (409)
Q Consensus       228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt  271 (409)
                      ..++.++..|+++++++.|++..+++.          ++++|||
T Consensus       194 ~~~~~~l~~G~t~v~~~rFd~~~~l~~----------i~~~~vT  227 (227)
T TIGR03089       194 ATLLAPLAAGGSLVLVTHPDPARLDQI----------AETERVT  227 (227)
T ss_pred             HHHHHHhccCceEEEecCCCHHHHHHH----------HHhhcCC
Confidence            889999999999999999999999999          7778886

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.92  E-value=5e-23  Score=200.67  Aligned_cols=368  Identities=15%  Similarity=0.221  Sum_probs=262.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      ++.+.|+++++.+||.+|+..      ..+++||.+|+.++.+++..|.++                .-+++||+|+|++
T Consensus       771 ~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k----------------~~lk~Gd~V~Lmy  834 (1363)
T KOG3628|consen  771 TILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDK----------------GHLKAGDHVVLMY  834 (1363)
T ss_pred             HHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhc----------------ccCCCCCeEEEEc
Confidence            688999999999999999987      347999999999999999999987                4889999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCCh------HHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC---C
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPE------SELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP---V  146 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~------~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~  146 (409)
                      ++++|++++++||+++|++++|++|....      ..+..+++.+++..|+++.+....++.-..........++-   .
T Consensus       835 ~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~  914 (1363)
T KOG3628|consen  835 PPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVL  914 (1363)
T ss_pred             CChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcc
Confidence            99999999999999999999999875433      35778899999999999998776655422111111111221   1


Q ss_pred             CCCCCC-cc----ccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCch
Q 015313          147 PNVSSE-TT----VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (409)
Q Consensus       147 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~  221 (409)
                      ++.... ..    ........++-...++.+|++-+.--++|.--++.++|+++++.....-+...+.+..-++...+.+
T Consensus       915 ~~~~~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~  994 (1363)
T KOG3628|consen  915 PKLPETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY  994 (1363)
T ss_pred             cccchhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence            111110 00    0001111122233567899999999999999999999999999999999888888877777777777


Q ss_pred             hHHHHHHHHHHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHH
Q 015313          222 HVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (409)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~  297 (409)
                      ...|+...-+...++|.+.+++++.    ++.-++..          +++|++.-++.+=..++.+.+.++........ 
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~----------i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~- 1063 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQI----------ISQYKVKDTYPTYSTLNLCQKGLETSVENLSK- 1063 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHH----------HhcccccccchhHHHHHHHHhccccccchhhh-
Confidence            7777766666778999988888764    45555555          88899999999988888887766543333322 


Q ss_pred             hhhhhccceEEEeeCCCCCHHHHHHHHHHh---CC---ccccccccccccccccccCCC----------------C----
Q 015313          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRG----------------A----  351 (409)
Q Consensus       298 ~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~tE~g~~~~~~~~~----------------~----  351 (409)
                      ...+.+. ..++..-+.-...+...|.+.|   |.   .+.-.|++.---.++.....+                .    
T Consensus      1064 ~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~v 1142 (1363)
T KOG3628|consen 1064 RGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLV 1142 (1363)
T ss_pred             hhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeee
Confidence            2333443 4444445555556777777766   22   344455554433333321100                0    


Q ss_pred             --CCcc-----ccccccCCeEEEEeeCCCC-CCCCc-cceEEEeCcchhhhhcCC
Q 015313          352 --RKAG-----TVGNPLPGVQVKIAEDESG-SDAAG-VGEICVKSPSLFKEYWKL  397 (409)
Q Consensus       352 --~~~~-----~~G~p~~~~~~~ivd~~~~-~~~~~-~Gel~v~g~~~~~gY~~~  397 (409)
                        ..+.     ..|...+++++.|++++++ ++.+| .||||++|.+-+.+|++.
T Consensus      1143 e~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1143 EVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTI 1197 (1363)
T ss_pred             ecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEecccccccccccc
Confidence              0011     2378889999999999985 46666 899999999999888875

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.88  E-value=8.3e-22  Score=188.93  Aligned_cols=200  Identities=19%  Similarity=0.158  Sum_probs=150.9

Q ss_pred             CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHH---HhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML---TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (409)
Q Consensus       168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~  244 (409)
                      ..++++.+++||||||.||++.++|.++.......   ....+...+|++++..++.+..+.+...+..+..|++++.++
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            34578889999999999999999999987654333   234577888999887766544443333566788899999888


Q ss_pred             CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHH
Q 015313          245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (409)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~  324 (409)
                      ..+++.+++.          ++++++|+++++|+++..|++..+...      ......++|.+++||+++++++.+.++
T Consensus       153 ~~~~~~~~~~----------i~~~~~t~l~~~Ps~l~~L~~~~~~~~------~~~~~~~lr~i~~~ge~l~~~~~~~i~  216 (422)
T TIGR02155       153 GGQTEKQVQL----------IQDFKPDIIMVTPSYMLNLLEELKRMG------IDPAQTSLQVGIFGAEPWTNAMRKEIE  216 (422)
T ss_pred             CCCHHHHHHH----------HHHHCCCEEEEcHHHHHHHHHHHHHcC------CCcccCceEEEEEeCCcCCHHHHHHHH
Confidence            7778888887          788999999999999999987533211      001235899999999999999999999


Q ss_pred             HHhCCccccccccccccc--cccccCCCCCCcccccccc--CCeEEEEeeC-CCCCCCCc-cceEEEeCc
Q 015313          325 TITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPL--PGVQVKIAED-ESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       325 ~~~~~~v~~~YG~tE~g~--~~~~~~~~~~~~~~~G~p~--~~~~~~ivd~-~~~~~~~~-~Gel~v~g~  388 (409)
                      +.||+++++.||+||+++  +...+..  .   ..|.++  +++.++|+|+ +++++++| .|||++++.
T Consensus       217 ~~~g~~v~~~YG~tE~~~~~~~~~~~~--~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~  281 (422)
T TIGR02155       217 ARLGMKATDIYGLSEVIGPGVAMECVE--T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL  281 (422)
T ss_pred             HHhCCceEecccchhhcCCceeecccc--c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC
Confidence            999999999999999853  2222111  1   123333  3577899994 67888888 899999985

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.87  E-value=4.2e-21  Score=180.08  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=136.4

Q ss_pred             CCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCC--CCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcc
Q 015313          170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS--ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS  247 (409)
Q Consensus       170 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~  247 (409)
                      +..++++|||||||.||+|.++|+++...+......++...  .|++++.+|++|..|+...++.++..|+++++.+.++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            56889999999999999999999999998888777776643  4689999999999998777888999999999999888


Q ss_pred             hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHh
Q 015313          248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT  327 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~  327 (409)
                      +..+++.          ++.  .|+++++|.+++.+.+..            .++++++. ++||+++++++.+.+.+. 
T Consensus       175 ~~~~l~~----------i~~--~t~~~~~P~~l~~l~~~~------------~~l~slr~-i~gGa~l~~~l~~~~~~~-  228 (386)
T TIGR02372       175 ASGIMRH----------ARP--GDLIVGTPFIWEQLADLD------------YRLPGVVG-VSSGAPSTAATWRCLLAA-  228 (386)
T ss_pred             hHHHHHh----------hcc--CCEEEECcHHHHHHHhhC------------cCCCccee-EecCCCCCHHHHHHHHHh-
Confidence            8887776          443  389999999999987631            23566776 678999999999999886 


Q ss_pred             CC-ccccccccccccccccccCCCCCCccccccccCCeEEEE
Q 015313          328 GH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI  368 (409)
Q Consensus       328 ~~-~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~i  368 (409)
                      +. .+++.||+||++++....     .++..|.|+|++++++
T Consensus       229 g~~~v~~~YG~TEt~~i~~~~-----~~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       229 GLARLLEVYGATETGGIGLRE-----APDDPFRLLPDLACFA  265 (386)
T ss_pred             cccchhheecccccccccccc-----CCCCCcccCCCccccC
Confidence            64 799999999998655432     1234578888887765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.84  E-value=6.7e-20  Score=176.07  Aligned_cols=196  Identities=19%  Similarity=0.167  Sum_probs=146.5

Q ss_pred             CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (409)
Q Consensus       168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~  244 (409)
                      ..+++..+.+||||||.||+|.+||.++..........   .++.++|+++...++.+..+.....++++..|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            34678899999999999999999999988766554433   378889999999998876665443566678888876544


Q ss_pred             CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHH
Q 015313          245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (409)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~  324 (409)
                      .  ....++.          ++++++|.+.++|+.+..+++.++....      ....+++|.+++||+++++++.+.+.
T Consensus       164 ~--~~~~~~~----------i~~~~~t~l~~~ps~ll~La~~~~~~g~------~~~~~~lr~ii~gGE~l~~~~r~~ie  225 (445)
T TIGR03335       164 K--CTFPIRI----------IESYRPTGIVASVFKLLRLARRMKAEGI------DPAESSIRRLVVGGESFADESRNYVE  225 (445)
T ss_pred             c--hhHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCcceEEEEcCCCCCHHHHHHHH
Confidence            3  2344555          6779999999999998888765332110      11236899999999999999999999


Q ss_pred             HHhCCccccccccccccccccccCCCCCCcccccccc--CCeEEEEeeCCCC-CCCCc-cceEEEeCc
Q 015313          325 TITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPL--PGVQVKIAEDESG-SDAAG-VGEICVKSP  388 (409)
Q Consensus       325 ~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~--~~~~~~ivd~~~~-~~~~~-~Gel~v~g~  388 (409)
                      +.+|+++++.||+||++.. ..+..      ..|..+  +.+.++|+|+++. ++++| .|||++++-
T Consensus       226 ~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L  286 (445)
T TIGR03335       226 ELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTL  286 (445)
T ss_pred             HHhCCcEEecCChhhhhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEec
Confidence            9999999999999998632 22211      123333  4578999998875 47777 899999964

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.67  E-value=2.7e-15  Score=138.02  Aligned_cols=199  Identities=19%  Similarity=0.140  Sum_probs=149.5

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEc
Q 015313          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM  243 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~  243 (409)
                      ...+++..|.-||||||+|+.+.+++..+..+...+...+   +...+|++....-..-..|-...-+++--.|++++-.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            3446677799999999999999999999988777776554   6677887776655332221112234445578888777


Q ss_pred             cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHH
Q 015313          244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW  323 (409)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~  323 (409)
                      .+-+.+.-.+.          ++.+++|.+.++|+.+..+++.+++.+      ....-.++|.+++|+|++++++.+.+
T Consensus       167 ~~g~~~~~~~l----------~~df~~tvI~~tps~~l~lae~~~~~G------~~~~~~~lk~~i~gaE~~see~R~~i  230 (438)
T COG1541         167 SGGNTERQLEL----------MKDFKPTVIAATPSYLLYLAEEAEEEG------IDPDKLSLKKGIFGAEPWSEEMRKVI  230 (438)
T ss_pred             CCccHHHHHHH----------HHhcCCcEEEEChHHHHHHHHHHHHcC------CChhhcceeEEEEecccCCHHHHHHH
Confidence            66566666676          777999999999999999999866542      12345689999999999999999999


Q ss_pred             HHHhCCccccccccccccccc-cccCCCCCCcccccc--ccCCeEEEEeeCC-CCCCCCc-cceEEEeC
Q 015313          324 ETITGHRLLERYGMTEFVMAI-SNPLRGARKAGTVGN--PLPGVQVKIAEDE-SGSDAAG-VGEICVKS  387 (409)
Q Consensus       324 ~~~~~~~v~~~YG~tE~g~~~-~~~~~~~~~~~~~G~--p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g  387 (409)
                      .+.||+..++.||.||..++. ..+.+..      |-  .-+...+.|+|++ |+.+++| .|||.++.
T Consensus       231 e~~~g~~~~diYGltE~~g~g~~eC~~~~------glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~  293 (438)
T COG1541         231 ENRFGCKAFDIYGLTEGFGPGAGECTERN------GLHIWEDHFIFEIVDPETGEQLPDGERGELVITT  293 (438)
T ss_pred             HHHhCCceeeccccccccCCccccccccc------CCCcchhhceeeeecCCcCccCCCCCeeEEEEEe
Confidence            999999999999999997764 2222111      22  2366789999966 4667888 69999985

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.67  E-value=1.5e-15  Score=149.11  Aligned_cols=369  Identities=19%  Similarity=0.156  Sum_probs=253.0

Q ss_pred             HHHHHHHhcccCCCeeEEEeC-----CccccHHHHHHHHHHHHH-HHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            3 VFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISS-LLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~~-----~~~~Ty~~l~~~~~~~a~-~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +...++....+++.++|.++-     ...+||..+..++.++|+ .|.+                 -|+.++|+|.+++.
T Consensus        96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-----------------sgl~~~~~vvL~Y~  158 (1363)
T KOG3628|consen   96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-----------------SGLKPGDRVVLYYR  158 (1363)
T ss_pred             hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-----------------cCCCCCcEEEEEEE
Confidence            455677777888888998872     258999999999999999 5555                 49999999999999


Q ss_pred             CC--HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-CceeccCCCCCCCCCc
Q 015313           77 PS--FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSET  153 (409)
Q Consensus        77 ~~--~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (409)
                      .+  .++++..++|...|.+++|+.+..+-+++..+++....+++++.......+........ .+...+-...+..   
T Consensus       159 ~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k---  235 (1363)
T KOG3628|consen  159 KCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFK---  235 (1363)
T ss_pred             hhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhccccc---
Confidence            77  99999999999999999999999999999999999999999999877666554431111 0000000000000   


Q ss_pred             cccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh--------------------cccCCCCe
Q 015313          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------------------WEYTSADQ  213 (409)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------------------~~~~~~d~  213 (409)
                       ..-..+....+...-. ..+|-||.+++|.--+++.+|. ++.+++.....                    ++....+.
T Consensus       236 -~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~  312 (1363)
T KOG3628|consen  236 -GNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDV  312 (1363)
T ss_pred             -ceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccc
Confidence             0000011111111222 8899999999999999999998 66655543221                    23455677


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhh
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  290 (409)
                      ++-........|++.+++.++++|.|.+.+++   ..+..+...          +.+++.+++..--..+.+....+...
T Consensus       313 ~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l----------~~k~R~~~~ltd~~~Lkq~~~ny~~~  382 (1363)
T KOG3628|consen  313 LLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL----------ITKYRATWSLTDYAGLKQPVYNYQED  382 (1363)
T ss_pred             eeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh----------hccceeEEEeecccccCcccccccCC
Confidence            77788888888999999999999999999987   344444444          78899999888766666665554432


Q ss_pred             hHH---HHHHhhhhhccceEEEeeCCCCCHHHHHHH----HHHhCC------------------cccccccccccccccc
Q 015313          291 DTE---LQAASASAAKQLRLMMCGSSALPLPVMQQW----ETITGH------------------RLLERYGMTEFVMAIS  345 (409)
Q Consensus       291 ~~~---~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~----~~~~~~------------------~v~~~YG~tE~g~~~~  345 (409)
                      +-.   ..+.+..+++++|.+++....+..+..+-.    .+-+|.                  -....-+++|.+....
T Consensus       383 p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~  462 (1363)
T KOG3628|consen  383 PKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSI  462 (1363)
T ss_pred             cccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccc
Confidence            211   124456789999999999999988755433    222222                  1222233455554433


Q ss_pred             ccCCCC------------------------------CCccccccccCC-eEEEEeeCCCCC-CCCc-cceEEEeCcchhh
Q 015313          346 NPLRGA------------------------------RKAGTVGNPLPG-VQVKIAEDESGS-DAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       346 ~~~~~~------------------------------~~~~~~G~p~~~-~~~~ivd~~~~~-~~~~-~Gel~v~g~~~~~  392 (409)
                      ..+...                              .....+|+..|+ +-+.|++++.+. +..+ +|||||.++++.+
T Consensus       463 r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~  542 (1363)
T KOG3628|consen  463 RRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGK  542 (1363)
T ss_pred             cCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCccc
Confidence            222100                              001124555544 567888887754 5555 8999999999999


Q ss_pred             hhcCCCcccchh
Q 015313          393 EYWKLPKESRTL  404 (409)
Q Consensus       393 gY~~~~~~t~~~  404 (409)
                      +||.-+.-|...
T Consensus       543 ~~~al~~~t~~~  554 (1363)
T KOG3628|consen  543 LFYALDKQTENT  554 (1363)
T ss_pred             ceeeccccccce
Confidence            999988877655

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=9.7e-15  Score=147.27  Aligned_cols=311  Identities=17%  Similarity=0.182  Sum_probs=196.5

Q ss_pred             HHHHHHHhcccCCCeeEEEeC--------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEE
Q 015313            3 VFKAAYKKGSMARDSVAIRAD--------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~~--------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~   74 (409)
                      +.+.+.+.+..+|+.++..+-        -.++||.+....++.++..|...                 +..+|+.|+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~-----------------~~~~~~~v~i~  100 (1032)
T KOG1178|consen   38 LEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSL-----------------GSLRGTTVAIY  100 (1032)
T ss_pred             hhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhc-----------------ccccCceEEEe
Confidence            345777888888888877651        26899999999999999999994                 88999999999


Q ss_pred             eCCCHHHHHHHHHHHhhCcEEEeCCCCCC----hHHHHHHHhcC-CceEEEechhHHHHHHHHhhccCCceeccCCCCCC
Q 015313           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYP----ESELLHVMHDS-DISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV  149 (409)
Q Consensus        75 ~~~~~~~~~~~~A~~~~G~~~~~i~~~~~----~~~~~~~l~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (409)
                      +..+.++++..++++++|..+++++|.++    .+++..+.... ....-+....  +... +......+...+....  
T Consensus       101 ~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l--~i~~-~~~~~~~~~~sv~~~~--  175 (1032)
T KOG1178|consen  101 MLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL--NIID-ILLNSLFPKLSVETIA--  175 (1032)
T ss_pred             ccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh--hhHH-HHhhccccccchhhcc--
Confidence            99999999999999999999999999999    33222211110 1101111110  0000 0000000000000000  


Q ss_pred             CCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHH
Q 015313          150 SSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA  229 (409)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~  229 (409)
                      .......-..........-++..+.+.||||+||.||+|..+|..+.....|....+..+..+++-.....+.....-..
T Consensus       176 ~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~  255 (1032)
T KOG1178|consen  176 DSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKF  255 (1032)
T ss_pred             chhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHH
Confidence            00000000011111223346778999999999999999999999999999999888888877765333333222111122


Q ss_pred             HHHHHhcCCEEEEccCcch---HHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHH-----Hhhhh
Q 015313          230 LLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA-----ASASA  301 (409)
Q Consensus       230 ~~~~l~~G~~i~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~-----~~~~~  301 (409)
                      +...|..|..+..+.....   ..+...          +++++++....+|++++.++............     .....
T Consensus       256 ~~~~L~~~~~l~~p~~~~~~~~~~l~~~----------le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~  325 (1032)
T KOG1178|consen  256 IGALLFNGNNLLVPTATIKDTPGQLAST----------LERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTK  325 (1032)
T ss_pred             HhhHhhcCceeecccccCccchhhHHHH----------HHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhccccccc
Confidence            3445566666666655433   333333          78899999999999999888764432111110     11122


Q ss_pred             hccceEEEeeCCCCCHHHHHHHHHHhCC-cccccccccccccccc
Q 015313          302 AKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAIS  345 (409)
Q Consensus       302 ~~~lr~v~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~  345 (409)
                      .+.|+....+|++....+...+...+.. -...-|+.++..+...
T Consensus       326 ~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s  370 (1032)
T KOG1178|consen  326 RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVS  370 (1032)
T ss_pred             chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCcccee
Confidence            4489999999999999998866665522 1222388888766544

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.24  E-value=3.1e-10  Score=107.28  Aligned_cols=150  Identities=11%  Similarity=0.053  Sum_probs=99.4

Q ss_pred             CcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEec-CchhHHHHHHHHHHHHhcCCE-EEEccC
Q 015313          171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCL-PLHHVHGLFNALLAPLYAGAT-VEFMPK  245 (409)
Q Consensus       171 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~-pl~~~~g~~~~~~~~l~~G~~-i~~~~~  245 (409)
                      .-..+..||||||.|-.+..+...............   +...++++...+ --.+       ++..+.+... +...+-
T Consensus       100 ~~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~-------ly~~~~~~~~~~~~~~l  172 (430)
T TIGR02304       100 GNISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNN-------LYQSVNNRWISLDFFDL  172 (430)
T ss_pred             CcEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChh-------HHHHHHhccceeeecCC
Confidence            345677899999999999999987654433332221   333444444332 1111       1222222211 222221


Q ss_pred             -cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHH
Q 015313          246 -FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (409)
Q Consensus       246 -~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~  324 (409)
                       -+.+..++.          |++++|+++.+.|+.+..|++..+...        .+ ..++.++++||.+++...+.++
T Consensus       173 ~~~~~~~l~~----------L~~~~P~~L~g~pS~l~~LA~~~~~~~--------l~-~~~k~ii~~~E~l~~~~r~~Ie  233 (430)
T TIGR02304       173 LAPFQAHIKR----------LNQRKPSIIVAPPSVLRALALEVMEGE--------LT-IKPKKVISVAEVLEPQDRELIR  233 (430)
T ss_pred             CcCHHHHHHH----------HHHhCCCEEEEcHHHHHHHHHHHHhcC--------CC-CCceEEEEccCCCCHHHHHHHH
Confidence             245555565          788999999999999999998643211        12 3689999999999999999999


Q ss_pred             HHhCCcccccccccccccccccc
Q 015313          325 TITGHRLLERYGMTEFVMAISNP  347 (409)
Q Consensus       325 ~~~~~~v~~~YG~tE~g~~~~~~  347 (409)
                      +.||++|++.||+|| |++...+
T Consensus       234 ~~fg~~V~~~YG~tE-g~la~eC  255 (430)
T TIGR02304       234 NVFKNTVHQIYQATE-GFLASTC  255 (430)
T ss_pred             HHhCCCeeEccCCch-hheEEec
Confidence            999999999999999 5544433

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.62  E-value=3.2e-06  Score=78.41  Aligned_cols=202  Identities=17%  Similarity=0.225  Sum_probs=119.1

Q ss_pred             CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---c-ccCCCC-eEEEecCchh----HHHHHHHHHHHHhcCC
Q 015313          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---W-EYTSAD-QFLHCLPLHH----VHGLFNALLAPLYAGA  238 (409)
Q Consensus       168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~-~~~~~d-~~l~~~pl~~----~~g~~~~~~~~l~~G~  238 (409)
                      .++++..++.||||||.|--+.+.+..+..+...+...   + ...... .++...|-..    ...........+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            45678889999999999877777666555554333322   2 222222 3333334321    1111122333344555


Q ss_pred             EEEEcc-CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhc-cceEEEeeC----
Q 015313          239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRLMMCGS----  312 (409)
Q Consensus       239 ~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~-~lr~v~~gG----  312 (409)
                      ...+-. .++.+.+...+.+.      ....++..+++.|.++-.++..+++..      ....++ ..+.+-.||    
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~------~~~~~pv~l~Gftf~~~~~~~~l~~~~------~~~~L~~~s~vi~~GGwK~~  234 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRA------EHSGEPVLLFGFTFFIWFLLDELEERG------IRFRLPKGSIVIHGGGWKGR  234 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHH------HhCCCCEEEECchHHHHHHHHHHHhcC------CcccCCCCCEEEeCCCCCcc
Confidence            544422 35667666665432      456789999999998877776654322      112333 456666776    


Q ss_pred             --CCCCH-HHHHHHHHHhCC----ccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCC-CCCCCc-cceE
Q 015313          313 --SALPL-PVMQQWETITGH----RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES-GSDAAG-VGEI  383 (409)
Q Consensus       313 --~~~~~-~~~~~~~~~~~~----~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~-~~~~~~-~Gel  383 (409)
                        +.++. +..+.+.+.||+    .+++.|||||.......+......      ..|.  +.|+|+++ ++++.| .|-|
T Consensus       235 ~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~~------~p~w--V~iRDp~tl~~~~~Ge~Gli  306 (365)
T PF04443_consen  235 RKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHFH------VPPW--VIIRDPETLEPLPPGETGLI  306 (365)
T ss_pred             ccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCccc------CCCe--EEEECCCCCcCCCCCCeeEE
Confidence              45654 555666777887    788999999987655544322221      1133  66778776 667777 8999


Q ss_pred             EEeCcc
Q 015313          384 CVKSPS  389 (409)
Q Consensus       384 ~v~g~~  389 (409)
                      .+-.+.
T Consensus       307 ~vidl~  312 (365)
T PF04443_consen  307 QVIDLA  312 (365)
T ss_pred             EEEccc
Confidence            887653

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.90  E-value=0.092  Score=49.58  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC--HHHHHHHHHHHhhCcEEEeCCCCCC
Q 015313           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSYP  103 (409)
Q Consensus        26 ~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~--~~~~~~~~A~~~~G~~~~~i~~~~~  103 (409)
                      -+|+.|....+..+|+.|..                 +|..+||+|.....-+  ..-....+|+.++|+.++|+.+...
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~-----------------~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~  171 (438)
T COG1541         109 GYTAKDIERWAELLARSLYS-----------------AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT  171 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHH-----------------ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH
Confidence            68999999999999999999                 5999999999887722  1115678899999999999988533


Q ss_pred             hHHHHHHHhcCCceEEEechhHHHHHHHHhhccC
Q 015313          104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG  137 (409)
Q Consensus       104 ~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~  137 (409)
                      . .-..++++.++.+|.+.+.+...+.+...+.+
T Consensus       172 ~-~~~~l~~df~~tvI~~tps~~l~lae~~~~~G  204 (438)
T COG1541         172 E-RQLELMKDFKPTVIAATPSYLLYLAEEAEEEG  204 (438)
T ss_pred             H-HHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC
Confidence            3 34568899999999999998877777655543

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=94.53  E-value=0.23  Score=49.16  Aligned_cols=77  Identities=18%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             ccccceeeecc-hHHHHHHHHhhhhhhHHHHH-----------------------------HhhhhhccceEEEeeCCCC
Q 015313          266 AGEAITAFTGV-PTMYTRLIQGYEAMDTELQA-----------------------------ASASAAKQLRLMMCGSSAL  315 (409)
Q Consensus       266 ~~~~vt~~~~~-P~~l~~l~~~~~~~~~~~~~-----------------------------~~~~~~~~lr~v~~gG~~~  315 (409)
                      .+..++.+.+. |+++..+.+.++.....+-.                             .-..-.+.|+.|.+-+..-
T Consensus       200 ~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~dI~~G~~~~~~p~p~rA~~L~~~~~~~~~~~~~lWP~L~~v~~~~~g~  279 (528)
T PF03321_consen  200 QDRDLRMISGWFPSFLLLLFRLLEKHWEELVEDIRDGTLSLLRPNPERAAELRAEFEKGRGIPKRLWPNLKLVSCWGGGS  279 (528)
T ss_dssp             CGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS--C-S--HHHHHHHHHHHCCSTTHHHHHSTT--EEEEE-SGG
T ss_pred             cccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHHhcCCccccCCCCHHHHHHHHHhhcccCCCHHHhCCCCcEEEEEcCCC
Confidence            36788888775 55666666665543332210                             0233478999777766666


Q ss_pred             CHHHHHHHHHHhCC-c-cccccccccccc
Q 015313          316 PLPVMQQWETITGH-R-LLERYGMTEFVM  342 (409)
Q Consensus       316 ~~~~~~~~~~~~~~-~-v~~~YG~tE~g~  342 (409)
                      .....+++++.+|. + +..+|++||+-+
T Consensus       280 ~~~y~~~l~~~~g~~~~~~~~y~ASEg~i  308 (528)
T PF03321_consen  280 MAPYAPKLREYFGGVPIQSKGYGASEGFI  308 (528)
T ss_dssp             GGGGHHHHHHHHTTS-EEE-EEEETTEEE
T ss_pred             hHHHHHHHHHHcCCCceeeccccccceEE
Confidence            66777888888853 3 446899999643

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=89.90  E-value=5.4  Score=39.86  Aligned_cols=31  Identities=16%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEecCCCCC-CCceeeechHHHHH
Q 015313          167 QRGEDPALIVYTSGTTG-KPKGVVHTHKSIDA  197 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtTG-~pK~v~~t~~~l~~  197 (409)
                      ..++.+.++..|||||| ++|-+++|+..+-.
T Consensus        98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            34667789999999997 69999999997765

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.50  E-value=6.9  Score=37.93  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH--HHHHHHHHHhhCcEEEeCCCCCC
Q 015313           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAGVLGTWFSGCIAVPLALSYP  103 (409)
Q Consensus        26 ~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~--~~~~~~A~~~~G~~~~~i~~~~~  103 (409)
                      .+|.+++...+...+..+..                 +|+.+||++.+..+.+..  .....+++...|+.++|...   
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~-----------------~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---  164 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVS-----------------QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---  164 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---
Confidence            57899999888888888877                 488999999998876542  23445778889998887653   


Q ss_pred             hHHHHHHHhcCCceEEEechhHHHHH
Q 015313          104 ESELLHVMHDSDISMVLSTEDYREVL  129 (409)
Q Consensus       104 ~~~~~~~l~~~~~~~vi~~~~~~~~~  129 (409)
                      ......++++.++.+++......-.+
T Consensus       165 ~~~~~~~i~~~~~t~l~~~ps~ll~L  190 (445)
T TIGR03335       165 CTFPIRIIESYRPTGIVASVFKLLRL  190 (445)
T ss_pred             hhHHHHHHHHhCCCEEEECHHHHHHH
Confidence            23345678899999998877654433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=86.62  E-value=7.5  Score=37.29  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=65.1

Q ss_pred             cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH--HHHHHHHHHHhhCcEEEeCCCCCC
Q 015313           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSYP  103 (409)
Q Consensus        26 ~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~--~~~~~~~A~~~~G~~~~~i~~~~~  103 (409)
                      .+|..++......++..+..                 +|+++||++........  ......++....|+.+++++... 
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~-----------------~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  155 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRA-----------------AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-  155 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-----------------cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-
Confidence            56778887776667777766                 48899999887665432  22234567888999999887654 


Q ss_pred             hHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313          104 ESELLHVMHDSDISMVLSTEDYREVLQN  131 (409)
Q Consensus       104 ~~~~~~~l~~~~~~~vi~~~~~~~~~~~  131 (409)
                      .+.+-..+++.++.+++..+..+..+.+
T Consensus       156 ~~~~~~~i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       156 TEKQVQLIQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHHHHHHHHCCCEEEEcHHHHHHHHH
Confidence            4667788999999999999987766544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=85.34  E-value=14  Score=35.60  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=73.3

Q ss_pred             CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC--CCHHHH
Q 015313           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK--PSFEFV   82 (409)
Q Consensus        14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~--~~~~~~   82 (409)
                      .||.++-+.         .+.++|-.++.+.+..++..+                    |+...+++++-.|  .+.-.+
T Consensus       232 ~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~--------------------g~~e~~~i~~~~Pl~H~~G~~  291 (596)
T KOG1177|consen  232 SPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA--------------------GYNEKHRICIPNPLYHCFGCV  291 (596)
T ss_pred             CCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh--------------------CcCcceEEEecCchHHHHHHH
Confidence            466666554         346999999999998888776                    6666444443333  234556


Q ss_pred             HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus        83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                      +..+|++..|+..|.-.|...+...-..+++.+...++..+..+-.+.+.
T Consensus       292 ~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~  341 (596)
T KOG1177|consen  292 LGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNI  341 (596)
T ss_pred             HHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcc
Confidence            77888999999999888888888888889999999999998766544443

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=80.88  E-value=16  Score=35.79  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH--HHHHHHHHHHhhCcEEEeCCCCC
Q 015313           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSY  102 (409)
Q Consensus        25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~--~~~~~~~A~~~~G~~~~~i~~~~  102 (409)
                      -.+|+..+...+......                    ++++.++++....+...  .+...+++++..|+.+++. +..
T Consensus       184 v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~  242 (513)
T PRK07656        184 AMLTHRQLLSNAADWAEY--------------------LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVF  242 (513)
T ss_pred             EEEecHHHHHHHHHHHHh--------------------hCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcC
Confidence            368888887666554433                    37788999988877543  3345678889999988876 456


Q ss_pred             ChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313          103 PESELLHVMHDSDISMVLSTEDYREVLQN  131 (409)
Q Consensus       103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  131 (409)
                      +++.+...+++.++.++...+..+..+..
T Consensus       243 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  271 (513)
T PRK07656        243 DPDEVFRLIETERITVLPGPPTMYNSLLQ  271 (513)
T ss_pred             CHHHHHHHHHHhCCeEEechHHHHHHHHc
Confidence            78888899999999999998887766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-43
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		4e-42
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		4e-38
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		4e-38
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		4e-38
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-20
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-20
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		4e-17
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-16
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-15
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		5e-14
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		4e-13
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-12
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-12
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		4e-12
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		4e-12
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		4e-12
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-12
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-11
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-10
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-10
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-09
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-09
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		1e-08
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-08
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		1e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-08
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		7e-08
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-07
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-07
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		6e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		7e-06
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-06
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		7e-06
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		8e-06
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		8e-06
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		8e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		3e-05
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-05
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-05
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-05
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		3e-05
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-04
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		7e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  171 bits (434), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 168/337 (49%), Gaps = 37/337 (10%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+ + A P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D     
Sbjct: 70  RVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--- 126
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
                        +PP         V  +++ A   DG    DPAL+VYTSGTTG PKG 
Sbjct: 127 -------------LPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGA 173
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V   +++   +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS 
Sbjct: 174 VIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFST 233
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM 308
            G  +   +             T   GVPTMY R+ +   A D EL           RL+
Sbjct: 234 EGAARELNDGA-----------TMLFGVPTMYHRIAETLPA-DPELAKALAGA----RLL 277
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI 368
           + GS+ALP+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++++
Sbjct: 278 VSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRL 337
Query: 369 AEDE----SGSDAAGVGEICVKSPSLFKEYWKLPKES 401
            E++    +  D   VGEI V+ P+LF EY   P  +
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 22/339 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+K GA    + P    S        S+A     +  +D A I+YTSGTTG+ K
Sbjct: 112 DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSK 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G   +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  +  F+PKF
Sbjct: 172 GAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                    R
Sbjct: 232 DPDKILDLXARA------------TVLXGVPTFYTRLLQS--------PRLTKETTGHXR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYG TE     SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKESRT 403
           ++ + E+G +     +G I VK P++FK YW+ P+++++
Sbjct: 332 RVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKS 370

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 161/337 (47%), Gaps = 22/337 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKES 401
           ++ + E+G +     +G I V  P++F  YW++P+ +
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXT 368

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 161/337 (47%), Gaps = 22/337 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKES 401
           ++ + E+G +     +G I V  P++F  YW++P+ +
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXT 368

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score =  155 bits (391), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 161/337 (47%), Gaps = 22/337 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKES 401
           ++ + E+G +     +G I V  P++F  YW++P+ +
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXT 368

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 58/355 (16%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 68  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 128 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 174
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 235 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 283
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                        R  + G + +P  +++ +     E + G+ L E  G    +++    
Sbjct: 284 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 331
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
               RKAG+ G       V +  D+      G GE+ +KS  L KEYW  P+ +R
Sbjct: 332 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATR 384

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 58/355 (16%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 54  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 114 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 160
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 220
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 221 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 269
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                        R  + G + +P  +++ +     E + G+ L E  G    +++    
Sbjct: 270 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 317
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
               RKAG+ G       V +  D+      G GE+ +KS  L KEYW  P+ +R
Sbjct: 318 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATR 370

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFLHCLPLHHVHGLFN 228
           +D A  +Y+SG+TGKPKG VHTH ++    ++  +        D       L   +GL N
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242
Query: 229 ALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
            L  PL  GAT   M  + +   I+ R  E  P          T F GVPT+Y  ++   
Sbjct: 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRP----------TVFYGVPTLYANMLVS- 291
Query: 288 EAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
                            +R+      ALP  + +++    G  +L+  G TE +    + 
Sbjct: 292 -------PNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN 344
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLPKESR 402
             GA + GT G P+PG ++++  DE+G       VG++ +K PS    YW   ++SR
Sbjct: 345 RAGAVEYGTTGRPVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 51/352 (14%)
Query: 78  SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
           S EFV   LG    G I          +EL      S   ++++   Y E +++ A +S 
Sbjct: 84  SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 138 AKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK- 193
            K   +   P+     SE T  D+++A ++D    +D   + Y+SGTTG PKGV+ THK 
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVD-ISPDDVVALPYSSGTTGLPKGVMLTHKG 202
Query: 194 ---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---S 247
              S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPKF   S
Sbjct: 203 LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 248 VRGIWQRWRESY-PVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
           + G+ ++++ S  PV              VP +   + +  +    +L          LR
Sbjct: 263 LLGLIEKYKVSIAPV--------------VPPVMMSIAKSPDLDKHDLS--------SLR 300
Query: 307 LMMCGSSALPLPVMQQWE-TITGH----RLLERYGMTEFVMAISNPLRGAR-----KAGT 356
           ++  G +    P+ ++ E T+       RL + YGMTE    ++  L  A+     K G 
Sbjct: 301 MIKSGGA----PLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356
Query: 357 VGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKE-SRTLS 405
            G  +   ++KI + E+G+       GEIC++   + K Y   P+  SRT+ 
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 149/372 (40%), Gaps = 52/372 (13%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP--ESELL----HVMHDSDISMVLS 121
           G R+ ++  P    +   LG  ++GCIAVP+   YP  + +LL     ++ +S   +VL 
Sbjct: 65  GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLX 121
Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
             D+ +        +  KF  IP +   + E+   ++S + +    +  D A + YTSG+
Sbjct: 122 IADHIKKFTADELNTNPKFLKIPAI---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG---- 237
           T  PKGV  +H ++   +  +  ++           LP HH  GL   +L P+Y G    
Sbjct: 179 TXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAI 238
Query: 238 ----------------------ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
                                 AT+   P F+     +R RE     G      +TAF G
Sbjct: 239 XXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-EGLDLSSWVTAFNG 297
Query: 276 VPTMYTRLIQGYEAMDTELQXXXXXX-----XKQLRLMMCGSSALPLPVMQQWETITGHR 330
              +     + +     E               +  L++ G +         ++T+T  +
Sbjct: 298 AEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP-----GSSYKTLTLAK 352
Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
             E++       A  N   G+ K  + GNP+  V++   +     D   VGEI V+S S+
Sbjct: 353 --EQFQDHRVHFADDNS-PGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSV 409
Query: 391 FKEYWKLPKESR 402
            K YW  P+E+R
Sbjct: 410 AKGYWNQPEETR 421

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 48/345 (13%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
           EFV   L   F G  A      +  +E+      S+  ++++   Y + ++ + +  G  
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV 184
Query: 140 FSLIP-----PVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYTSGTTGKPKGVV 189
              I      P+P      T   QS  E  +         +D   + Y+SGTTG PKGV+
Sbjct: 185 IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 190 HTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            THK    S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPK
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQL 305
           F +  + +  +             +T    VP +   + +  E    +L          +
Sbjct: 305 FEINLLLELIQRC----------KVTVAPMVPPIVLAIAKSSETEKYDLS--------SI 346
Query: 306 RLMMCGSSALPLPVMQQWE-----TITGHRLLERYGMTEFVMAISNPLRGAR-----KAG 355
           R++  G++    P+ ++ E          +L + YGMTE    ++  L  A+     K+G
Sbjct: 347 RVVKSGAA----PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSG 402
Query: 356 TVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLP 398
             G  +   ++KI + ++G   +    GEIC++   + K Y   P
Sbjct: 403 ACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 447

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 138/344 (40%), Gaps = 49/344 (14%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI+ + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +  
Sbjct: 87  GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 146
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG------QRGEDPALIVYTS 179
             ++ N+                 + +  +F++   +  +G       +  D A ++YTS
Sbjct: 147 VHLIHNI---------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 191
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTG PKG +  HK I         +   T  D+      +     ++   +A L  GA+
Sbjct: 192 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA-LLTGAS 250
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXX 299
           +  + K ++    +   E Y +N     + IT  T  PT    L       D E      
Sbjct: 251 LYIILKDTINDFVK--FEQY-IN----QKEITVITLPPTYVVHL-------DPERILSIQ 296
Query: 300 XXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT--- 356
                  L+  GS+  P  V +  E +T    +  YG TE  +  +  +      G    
Sbjct: 297 T------LITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVP 347
Query: 357 VGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
           +G P+   Q+ I ++     + G  GE+C+    L + YWK P+
Sbjct: 348 IGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPE 391

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 146/370 (39%), Gaps = 44/370 (11%)
Query: 53  EKTKNENSAVLAGGC--GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHV 110
           E TK   S +   G   G  +G+    S ++V  +   W      VP+   Y   EL H+
Sbjct: 60  EVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHI 119
Query: 111 MHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQAEKMDGQRG 169
           ++DS+ + ++      E  + V  K+G  +  ++    N  SE         E +     
Sbjct: 120 LNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPE 179
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV--HGLF 227
           ED ALI YT GTTG PKGV  TH ++ A    L  A   +  D  + C P  H    GL 
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLV 239
Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG-----VPTMYTR 282
           N           V    ++ V G +         N     E I  + G     VP     
Sbjct: 240 N---------LXVTVGNEYVVXGXF---------NQEXLAENIEKYKGTFSWAVPPALNV 281
Query: 283 LIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLER--Y 335
           L+   E+ +             L++   G+  +   ++++      E     RL     +
Sbjct: 282 LVNTLESSNKTYDWSY------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIW 335
Query: 336 GMTEFVMAI-SNPLRGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFK 392
           G TE    + +NP     K+ T G P   +++K+   E G +      GEI ++ P++FK
Sbjct: 336 GXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFK 395
Query: 393 EYWKLPKESR 402
            YWK  KE++
Sbjct: 396 GYWKREKENQ 405

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 140/336 (41%), Gaps = 35/336 (10%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
            G G+ + +  K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++
Sbjct: 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570
Query: 125 YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            +E    +       F           + T F++  ++        DPA I+YTSGTTGK
Sbjct: 571 MKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGK 621
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           PKG + TH +I   V+ + +   ++  D FL        +  F+A     YA        
Sbjct: 622 PKGNITTHANIQGLVKHV-DYMAFSDQDTFLSV-----SNYAFDAFTFDFYASMLN---- 671
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQ 304
             + R I     E   ++  R  + I     V  M+        A+   L        K 
Sbjct: 672 --AARLIIA--DEHTLLDTERLTDLILQ-ENVNVMFATT-----ALFNLLTDAGEDWMKG 721
Query: 305 LRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTE---FVMA-ISNPLRGARKAGTVGN 359
           LR ++ G     +P +++   I G  +L+  YG TE   F  A + + L  +  +  +G 
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781
Query: 360 PLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394
           P+    V I  ++S     G VGE+C+    + K Y
Sbjct: 782 PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 148/367 (40%), Gaps = 64/367 (17%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
             AI     G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNN 404
Query: 398 PKESRTL 404
           P+ +  L
Sbjct: 405 PEATNAL 411

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 148/367 (40%), Gaps = 64/367 (17%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
             AI     G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNN 404
Query: 398 PKESRTL 404
           P+ +  L
Sbjct: 405 PEATNAL 411

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 148/367 (40%), Gaps = 64/367 (17%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
           F   L  L  G  V  M +F    ++ R  + Y          I +   VPT++     +
Sbjct: 255 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 303
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 304 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 350
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
             AI     G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   
Sbjct: 351 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNN 409
Query: 398 PKESRTL 404
           P+ +  L
Sbjct: 410 PEATNAL 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 147/362 (40%), Gaps = 54/362 (14%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV      K  +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H+++  +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRALAVR---FSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           F   L  L +G  V  M +F    ++ R  + Y +        + +F    T    LI  
Sbjct: 255 FTT-LGYLISGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFLAKST----LIDK 308
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           Y+  +  E+        K++   +     LP           G R  + YG+TE   AI 
Sbjct: 309 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 355
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKESR 402
              +G  K G VG  +P  + K+ + ++G    GV   GE+ V+ P +   Y   P+ + 
Sbjct: 356 ITPKGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELSVRGPMIMSGYVNNPEATN 414
Query: 403 TL 404
            L
Sbjct: 415 AL 416

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 141/353 (39%), Gaps = 69/353 (19%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ I+++   E +  +      G I +P+       E+  V+ D   S+V++  DYR+
Sbjct: 56  GDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115
Query: 128 VLQNV-ASKSGAKFSL--------IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178
           ++  V  S  G K +           P  +++S+T  F   +    DG       +I++T
Sbjct: 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-FSAPEFGAADG------FVIIHT 168
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G+P+G + +  ++      L +AW  T AD  L  LPL HV GL   L      GA
Sbjct: 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228
Query: 239 TV---EFMPKFSVRGIWQR----WRESYPVNGNRAGEA-------ITAFTGVPTMYTRLI 284
           +V   +F P  + R I         E  P+ GN   +A       + A TG+ T  T  I
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPET--I 286
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI 344
           + +EA                    C       P    W T       E  G++ F    
Sbjct: 287 ERFEA-------------------TC-------PNATFWATFGQS---ETSGLSTFA--- 314
Query: 345 SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK 396
             P R   K  + G PL    V + + E      G VGEI ++ P++FK YW 
Sbjct: 315 --PYRDRPK--SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN 363

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 39/267 (14%)
Query: 156 FDQSQAEKMDGQRGEDPAL--IVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSA 211
           ++++  E+ D  R  + A   + YT+GTTG PKGVV++H++  + +    L +    +  
Sbjct: 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271
           D  L  +P+ HV+       A L     V   P+     + + +           GE +T
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD----------GEGVT 269
Query: 272 AFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRL 331
              GVPT++  L    E+    L        K LR ++ G SA P  ++ ++E + G  +
Sbjct: 270 FTAGVPTVWLALADYLESTGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEV 320
Query: 332 LERYGMTE--------FVM----AISNPLRGARKAGTVGNPLPGVQVKIAEDESG---SD 376
            + YG+TE        FV     ++S   +   KA T G P+P V++++A++E      D
Sbjct: 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT-GLPIPLVRLRVADEEGRPVPKD 379
Query: 377 AAGVGEICVKSPSLFKEYWKLPKESRT 403
              +GE+ +K P +   Y+   + +R+
Sbjct: 380 GKALGEVQLKGPWITGGYYGNEEATRS 406

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 143/363 (39%), Gaps = 54/363 (14%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
            L  L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKES 401
           I     G  K G  G  +P  + K+ + ++         GE+CVK P L K Y   P+ +
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 RTL 404
           + L
Sbjct: 411 KEL 413

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 143/363 (39%), Gaps = 54/363 (14%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
            L  L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKES 401
           I     G  K G  G  +P  + K+ + ++         GE+CVK P L K Y   P+ +
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 RTL 404
           + L
Sbjct: 411 KEL 413

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 141/378 (37%), Gaps = 84/378 (22%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE----- 123
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++     
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 124 ---------------------DYR--EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160
                                DYR  + L     ++       PP    SS  TV     
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN------TPPGYQASSFKTV----- 186
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------F 214
               +  R E  ALI+ +SG+TG PKGV  TH++I   V   + A +    +Q       
Sbjct: 187 ----EVDRKEQVALIMNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAV 239
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           L  +P HH  G+F   L  L  G  V  + KF      +  ++             T   
Sbjct: 240 LTVVPFHHGFGMFTT-LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTNVI 288
Query: 275 GVPTMY-----TRLIQGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITG 328
            VPT++     + L+  Y+  +  E+        K++   +     LP           G
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------G 337
Query: 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVK 386
            R  + YG+TE   AI     G  K G  G  +P  + K+ + ++         GE+CVK
Sbjct: 338 VR--QGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 387 SPSLFKEYWKLPKESRTL 404
            P L K Y   P+ ++ L
Sbjct: 396 GPMLMKGYVNNPEATKEL 413

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 140/367 (38%), Gaps = 55/367 (14%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    I + ++ S +F   V G  F G    P    Y E EL + +  S  ++V  ++  
Sbjct: 107 GLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 126 REVLQNVASKSGAKFSLIPPVPNV----SSETTVFDQSQAEKMDGQ-------------- 167
            + +  V  K       +P +  +    S E  +  QS    ++                
Sbjct: 167 LQKILGVQKK-------LPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDS 219
Query: 168 --RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHH 222
             R    ALI+ +SG+TG PKGV  THK+I  +     +     +       L  +P HH
Sbjct: 220 FDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHH 279
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
             G+F   L  L  G  +  M +F    ++ R  + Y +        + +F    T    
Sbjct: 280 GFGMFTT-LGYLTCGFRIVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST---- 333
Query: 283 LIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV 341
           L+  Y+  +  E+        K++   +     LP           G R  + YG+TE  
Sbjct: 334 LVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLP-----------GIR--QGYGLTETT 380
Query: 342 MAISNPLRGA-RKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
            AI    RG   K G  G  +P    KI + ++G    GV   GE+CVK P + K Y   
Sbjct: 381 SAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGK-TLGVNQRGELCVKGPMIMKGYVNN 439
Query: 398 PKESRTL 404
           P+ +  L
Sbjct: 440 PEATSAL 446

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISMV 119
           G  G R+ I A    E+V   LG   +G IAVPL  S P+  +       V+ DS    +
Sbjct: 79  GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVAI 136
Query: 120 LSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIV 176
           L+T     +V+Q+VA + G         P    E  + D         +  E P  A + 
Sbjct: 137 LTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNA 229
           YTSG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL   
Sbjct: 190 YTSGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPPPNSALVSWLPFYHDXGLVIG 248
Query: 230 LLAPLYAG 237
           + AP+  G
Sbjct: 249 ICAPILGG 256

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 135/347 (38%), Gaps = 50/347 (14%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYR 126
           G R+ +   P  E +  +L     G   VP+ L  P S    ++ DS  S ++    +  
Sbjct: 85  GDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
            V + V + + A+     P P   +              G   ED A ++YTSGTTG PK
Sbjct: 145 AVTRVVRTAAVAECKDAEPGPVTGAP-------------GPGAEDMAYVIYTSGTTGNPK 191
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFL--HCLPLH----HVHGLFNALLAPLYAGATV 240
           GV   H ++ A +      ++++  D++L  H L        + G F+        GA +
Sbjct: 192 GVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFS-------TGAEL 244
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXX 300
             +P ++ R   Q       V  +R    +T     PT +  L        TE       
Sbjct: 245 VVLPHWAARTPEQ----YLAVIIDR---GVTVINQTPTAFLAL--------TEAAVRGGR 289
Query: 301 XXKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLRG----ARK 353
               LR ++ G   L  P+++ W    G    RL+  YG+TE  +  +         A+ 
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQD 349
Query: 354 AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
           A  +G  LP    ++  D+    A G  GE+ +    L + Y + P+
Sbjct: 350 ASIIGRALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPE 396

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISMV 119
           G  G R+ I A    E+V   LG   +G IAVPL  S P+  +       V+ DS    +
Sbjct: 79  GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVAI 136
Query: 120 LSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIV 176
           L+T     +V+Q+VA + G         P    E  + D         +  E P  A + 
Sbjct: 137 LTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNA 229
           YTSG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL   
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIG 248
Query: 230 LLAPLYAG 237
           + AP+  G
Sbjct: 249 ICAPILGG 256

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 151/382 (39%), Gaps = 50/382 (13%)
Query: 46  NDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE 104
            DLK  S+K  N    V  G G G  + +  K  ++F   +LG    G IAVP       
Sbjct: 90  KDLKYYSDKAAN--FFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 105 SELLHVMHDSDISMV--LSTEDYREVLQNVASKSG------AKFS------LIPPVPNVS 150
            ++++ +  + + M+  ++ +D  E +    ++ G      AK         I     + 
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELE 207
Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
             + +F++   E     + ED  L+ ++SGT G PK V H +      +  LT  +    
Sbjct: 208 ESSPIFERPTGEV--STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNV 263
Query: 211 ADQFLHCLPLHHVHG--LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRA 266
            D  LH        G  ++  L     AG  V      +F  + + ++         ++ 
Sbjct: 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK--------ASKY 315
Query: 267 GEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETI 326
           G  +T F   PT+Y  LI+         +         L+  +     L   V  ++   
Sbjct: 316 G--VTTFCAPPTIYRFLIK---------EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 327 TGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAGVGEICV 385
           TG +L+E +G TE V+ I+       K G++G P PG ++++ + D    +    GEI +
Sbjct: 365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI 424
Query: 386 -----KSPSLFKEYWKLPKESR 402
                K   LF  Y K P+ + 
Sbjct: 425 NTMEGKPVGLFVHYGKDPERTE 446

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 47/200 (23%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVL 120
           G R+ ++A+ S EFV       ++G +AVPLA+           ++L  ++     + ++
Sbjct: 73  GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAII 132
Query: 121 STEDYREVLQNVASK--------SGAKFSLIP--------PVPNVSSETTVFDQSQAEKM 164
           + +++  ++ N A+         S A F  +P        PVPN                
Sbjct: 133 TGDEWLPLV-NAATHDNPELHVLSHAWFKALPEADVALQRPVPN---------------- 175
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHV 223
                 D A + YTSG+T  P+GV+ TH+ + A ++ ++ +  +    D+ +  LP +H 
Sbjct: 176 ------DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 224 HGLFNALLAPLYAGATVEFM 243
            GL   LL P+    +V+++
Sbjct: 230 XGLVGFLLTPVATQLSVDYL 249

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 128/343 (37%), Gaps = 46/343 (13%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
           +R+G+    S + +  +   W +      +      +E+ + M   D+ ++  T      
Sbjct: 49  SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 129 LQNVASKSGAKFSLIPPVPN------------VSSETTVFDQSQAEKMDGQRG-EDPALI 175
              + S    +F+      N             S+ET V  +S +  ++     +D A I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           ++TSGTTG  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  + 
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVI 227
Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295
            G TV  + KF+   I    +           E IT  + VP     L+Q        LQ
Sbjct: 228 EGFTVRIVDKFNAEQILTMIK----------NERITHISLVPQTLNWLMQQGLHEPYNLQ 277
Query: 296 XXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLRGA 351
                  K    M+  +    LP+               +GMTE    F+ A    L   
Sbjct: 278 KILLGGAKLSATMIETALQYNLPIYNS------------FGMTETCSQFLTATPEMLHA- 324
Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEY 394
            +  TVG P   V VKI       +  G GE+ +K  ++   Y
Sbjct: 325 -RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNGY 362

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           + +  SE ++ + + VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 75  NFRELSENSQ-QAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
             +++L+ +  S    +++ ++  + +  VAS+  + +  L+    +    ++ +  + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
            S          ++ + I +TSGT+G PK   H++ S+  + +M    W    A   +  
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           +     +  +  +L+ P   GA   V  +PKF    I +    SYP         I +  
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
           G P +Y  L+Q         Q         L+  +  G S LP   ++ W   TG  + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK 386
            YG TE  +          K G +G       V+I +D+      G  G+I ++
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIR 406

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           + +  SE ++ + + VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 75  NFRELSENSQ-QAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
             +++L+ +  S    +++ ++  + +  VAS+  + +  L+    +    ++ +  + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
            S          ++ + I +TSGT+G PK   H++ S+  + +M    W    A   +  
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           +     +  +  +L+ P   GA   V  +PKF    I +    SYP         I +  
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
           G P +Y  L+Q         Q         L+  +  G S LP   ++ W   TG  + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK 386
            YG TE  +          K G +G       V+I +D+      G  G+I ++
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIR 406

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 31/226 (13%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL-PVMQQ--WETITGHR 330
           T +  +     +  E  D            +  L + GS+  P+ P   +  W+ I   +
Sbjct: 359 TAIRALMAEGDKAIEGTD------------RSSLRILGSAGEPINPEAWEWYWKKIGKEK 406
Query: 331 --LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
             +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDE 372
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 452

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVIEEF 231

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
               T   + +F
Sbjct: 220 ALDGTYVVVEEF 231

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNA 229
           PA I YTSGTTG PK  +   ++ +++V   +      +   +  L   PL+HV G F  
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAV 214
Query: 230 LLAPLYAGATVEFMPKF 246
           L+A L    T   + +F
Sbjct: 215 LVAALALDGTYVVVEEF 231

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 20/237 (8%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            ++ A    + GTTG PK +  TH      V+   E  ++T   ++L  +P  H + + +
Sbjct: 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSS 242
Query: 229 -ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
              L    AG TV      S    +    E + VN       +TA   VP   +  +Q  
Sbjct: 243 PGSLGVFLAGGTVVLAADPSATLCFP-LIEKHQVN-------VTAL--VPPAVSLWLQAL 292
Query: 288 EAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
              ++  Q         L+L+  G + L   +  +     G +L + +GM E ++  +  
Sbjct: 293 IEGESRAQLA------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRL 346
Query: 348 LRGARK-AGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKES 401
              A K   T G P+ P  +V +A+ E      G VG +  + P  F+ Y+K P+ +
Sbjct: 347 DDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-123
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-106
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	9e-86
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-82
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-79
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-79
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-75
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	9e-72
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-70
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-66
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	6e-66
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-65
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-62
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-62
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	8e-58
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-48
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-43
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-43
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-35
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-30
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	9e-29
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-26
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-26
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-25
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	6e-25
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-24
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-24
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	5e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	6e-09
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-07
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	9e-07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-06

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  366 bits (941), Expect = e-123
 Identities = 124/392 (31%), Positives = 183/392 (46%), Gaps = 59/392 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+R  ++S +Y +LA++A   +  +                      G   R+ + A
Sbjct: 38  DRPALRFGERSLTYAELAAAAGATAGRI----------------------GGAGRVAVWA 75

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
            P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D           
Sbjct: 76  TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD----------- 124

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                 L P +  +           A   DG    DPAL+VYTSGTTG PKG V   +++
Sbjct: 125 ----AELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL 180

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS  G  +  
Sbjct: 181 ATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
            +             T   GVPTMY R+ +   A     +A +       RL++ GS+AL
Sbjct: 241 NDG-----------ATMLFGVPTMYHRIAETLPADPELAKALAG-----ARLLVSGSAAL 284

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++++  +E G+
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLV-EEDGT 343

Query: 376 DAA-----GVGEICVKSPSLFKEYWKLPKESR 402
             A      VGEI V+ P+LF EY   P  + 
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATA 375

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  321 bits (826), Expect = e-106
 Identities = 118/391 (30%), Positives = 185/391 (47%), Gaps = 40/391 (10%)

Query: 15  RDSVAIR-ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              +AI  A     SY +L + A R++++L +  L+                  G R+  
Sbjct: 16  PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQV-----------------GDRVAA 58

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R+ +  +A
Sbjct: 59  QTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIA 118

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +K GA    + P    S        S+A     +  +D A I+YTSGTTG+ KG + +H 
Sbjct: 119 AKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHD 178

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+PKF    I  
Sbjct: 179 NLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                            T   GVPT YTRL+Q                   +RL + GS+
Sbjct: 239 LM------------ARATVLMGVPTFYTRLLQSPRLTKETTGH--------MRLFISGSA 278

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
            L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  ++ + E+
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPET 338

Query: 374 GSDAAG--VGEICVKSPSLFKEYWKLPKESR 402
           G +     +G I VK P++FK YW++P++++
Sbjct: 339 GKELPRGDIGMIEVKGPNVFKGYWRMPEKTK 369

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  269 bits (689), Expect = 9e-86
 Identities = 78/404 (19%), Positives = 141/404 (34%), Gaps = 62/404 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
             +AI   Q+SY+Y  L   A  ++                      L     +R+G+  
Sbjct: 16  HHIAITDGQESYTYQNLYCEASLLA--------------------KRLKAYQQSRVGLYI 55

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S + +  +   W +      +      +E+ + M   D+ ++  T         + S 
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL 115

Query: 136 SGAKF---SLIPPVPNVSSETTVFDQSQAEKMDGQR----------GEDPALIVYTSGTT 182
              +F    +       ++    +D S    +  +            +D A I++TSGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           G  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  +  G TV  
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRI 234

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
           + KF+   I    +           E IT  + VP     L+Q       +      +  
Sbjct: 235 VDKFNAEQILTMIKN----------ERITHISLVPQTLNWLMQ-------QGLHEPYN-- 275

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNP 360
             L+ ++ G + L   +++         +   +GMTE       + P     +  TVG P
Sbjct: 276 --LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 361 LPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKESRTL 404
              V VKI          G GE+ +K  ++   Y      + T 
Sbjct: 333 SANVDVKIKNPNKE----GHGELMIKGANVMNGYLYPTDLTGTF 372

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  259 bits (665), Expect = 4e-82
 Identities = 85/390 (21%), Positives = 149/390 (38%), Gaps = 43/390 (11%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              A    +     +Y Q+ + A R + +L +  +                   G R+ +
Sbjct: 31  RLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAK-----------------GDRVAL 73

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF     G    G +AVP+       E+  ++ DS   +V+       V+  + 
Sbjct: 74  LMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR 133

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +++    ++   +   S    +   +  E      G+D   I+YTSGTTG PKGVVHTH+
Sbjct: 134 AQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           S+ +         +    D+ L  LP+ HV  L   ++     G T+  MP+F    +W 
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISMPQFDATKVWS 252

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
              E          E +     VP +   + Q  E  + +            R  + G +
Sbjct: 253 LIVE----------ERVCIGGAVPAILNFMRQVPEFAELDAPD--------FRYFITGGA 294

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAED 371
            +P  +++ +       +++ Y +TE      +       RKAG+ G       V +   
Sbjct: 295 PMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR-G 352

Query: 372 ESGSD-AAGVGEICVKSPSLFKEYWKLPKE 400
           + G     G GE+ +KS  L KEYW  P+ 
Sbjct: 353 DDGVIREHGEGEVVIKSDILLKEYWNRPEA 382

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  253 bits (648), Expect = 1e-79
 Identities = 75/391 (19%), Positives = 132/391 (33%), Gaps = 46/391 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A   D    ++    + A R++S L  + + T                 G R+ I++
Sbjct: 21  DRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHT-----------------GDRVAILS 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E +  +      G I +P+       E+  V+ D   S+V++  DYR+++  V   
Sbjct: 64  QNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS 123

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHTHK 193
            G                   D +             D  +I++T+   G+P+G + +  
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG 183

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++      L +AW  T AD  L  LPL HV GL   +L    AG       KF      +
Sbjct: 184 NLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVIAAKFDPAQAAR 242

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                           +T       M   +          L  A+ +    LR +    +
Sbjct: 243 DIEA----------HKVTVMAEFAPMLGNI----------LDQAAPAQLASLRAVTGLDT 282

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
              +   +   T         +G +E     +       +  + G PL    V +  D  
Sbjct: 283 PETIERFE--ATCPNATFWATFGQSETSGLSTF-APYRDRPKSAGRPLFWRTVAVV-DAE 338

Query: 374 GSD-AAG-VGEICVKSPSLFKEYWKLPKESR 402
                 G VGEI ++ P++FK YW     ++
Sbjct: 339 DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQ 369

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  252 bits (646), Expect = 4e-79
 Identities = 92/400 (23%), Positives = 155/400 (38%), Gaps = 50/400 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S +Y +L   A R +S L +  +                     RI +V 
Sbjct: 38  GKTAYIDDTGSTTYGELEERARRFASALRTLGVH-----------------PEERILLVM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +       LG  ++G + V        ++ ++++  S    V+++    + +      
Sbjct: 81  LDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES 140

Query: 136 SGAKFSLI--------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           +      +         P      E  +   + A K      +D A  +Y+SG+TGKPKG
Sbjct: 141 AEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKG 200

Query: 188 VVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-K 245
            VHTH ++    ++  +        D       L   +GL N L  PL  GAT   M  +
Sbjct: 201 TVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            +   I+ R  E             T F GVPT+Y  ++           A        +
Sbjct: 261 PTADAIFARLVE----------HRPTVFYGVPTLYANMLVSPNLPARADVA--------I 302

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGV 364
           R+      ALP  + +++    G  +L+  G TE +   +SN   GA + GT G P+PG 
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGY 361

Query: 365 QVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESR 402
           ++++  DE+G     G VG++ +K PS    YW   ++SR
Sbjct: 362 EIELR-DEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  244 bits (624), Expect = 1e-75
 Identities = 82/399 (20%), Positives = 156/399 (39%), Gaps = 51/399 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           +        +S ++ ++     +++S +    ++                  G  +G+  
Sbjct: 42  EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK-----------------GEHVGVCI 84

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S ++V  +   W      VP+   Y   EL H+++DS+ + ++      E  + V  K
Sbjct: 85  PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK 144

Query: 136 SGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +G +   +      S SE         E +     ED ALI YT GTTG PKGV+ TH +
Sbjct: 145 TGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFN 204

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI--- 251
           + A    L  A   +  D  + C+P+ H       +   +  G     M  F+   +   
Sbjct: 205 LAANALQLAVATGLSHMDTIVGCMPMFHSAEF-GLVNLMVTVGNEYVVMGMFNQEMLAEN 263

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            ++++              T    VP     L+   E+ +     +       L++   G
Sbjct: 264 IEKYK-------------GTFSWAVPPALNVLVNTLESSNKTYDWSY------LKVFATG 304

Query: 312 SSALPLPVMQQWETITGHR-------LLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPG 363
           +  +   ++++   +   +         + +GMTE    ++ NP     K+ T G P+  
Sbjct: 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSD 364

Query: 364 VQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKE 400
           +++K+   E G +   G  GEI ++ P++FK YWK  KE
Sbjct: 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKE 403

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  232 bits (595), Expect = 9e-72
 Identities = 79/397 (19%), Positives = 145/397 (36%), Gaps = 50/397 (12%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+   A     ++ +L +    +++ L ++ L+                    R+ +
Sbjct: 17  DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAV 59

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           VA  S + V  +L     G +   L      +EL  ++   +++  +     +       
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           S SGA+   +  +     +   +      +   +    PA I YTSGTTG PK  +   +
Sbjct: 120 SGSGARIIFLGDLV---RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQR 176

Query: 194 SIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           + +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F     
Sbjct: 177 AAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA 236

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            Q  ++          E +T+    PT    L        + L+  S      LR +   
Sbjct: 237 LQLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFA 280

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE 370
            + +P  V++          +  YG TE + ++         K GT   P    +V+I  
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ----PKTGTEMAPGFFSEVRIVR 336

Query: 371 DESGSD---AAG-VGEICVK-SPSLFKEYWKLPKESR 402
              G D   A G  GE+ V  S S F  Y   P+ + 
Sbjct: 337 IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  232 bits (594), Expect = 1e-70
 Identities = 73/402 (18%), Positives = 140/402 (34%), Gaps = 46/402 (11%)

Query: 14  ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           A DS+A+   ++  SY +L  +A  ++  L    +K                  G    +
Sbjct: 38  ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKP-----------------GETALV 80

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREV 128
                 E           G   V    S+  SEL       + +++++          + 
Sbjct: 81  QLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF 140

Query: 129 LQNVASKSGA--KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           L    ++  +     L+      + +  +   ++         ++ A    + GTTG PK
Sbjct: 141 LNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPK 200

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPLYAGATVEFMPK 245
            +  TH      V+   E  ++T   ++L  +P  H + + +   L    AG TV     
Sbjct: 201 LIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            S    +    +            +     VP   +  +Q     ++  Q AS      L
Sbjct: 261 PSATLCFPLIEK----------HQVNVTALVPPAVSLWLQALIEGESRAQLAS------L 304

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL-PG 363
           +L+  G + L   +  +     G +L + +GM E  V          +   T G P+ P 
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364

Query: 364 VQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESRT 403
            +V +A D  G+    G VG +  + P  F+ Y+K P+ + +
Sbjct: 365 DEVWVA-DAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 405

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  219 bits (560), Expect = 2e-66
 Identities = 85/417 (20%), Positives = 152/417 (36%), Gaps = 61/417 (14%)

Query: 3   VFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           V +              +   A+   Y+Y  +  +A R++S L    ++           
Sbjct: 28  VLENLSNHS----SKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQ---------- 73

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  G  I +    S EFV   LG    G I          +EL      S   +++
Sbjct: 74  -------GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126

Query: 121 STEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQAEKMDGQRG-EDPALIVYT 178
           +   Y E +++ A +S  K   +          + +    + E        +D   + Y+
Sbjct: 127 TQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYS 186

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPL 234
           SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L + +L  L
Sbjct: 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246

Query: 235 YAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             GA +  MPKF +  +    ++++             ++    VP +   + +  +   
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYK-------------VSIAPVVPPVMMSIAKSPDLDK 293

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWE-TITGHRLLERYGMTE-----FVMAIS 345
            +L +        LR++  G + L   +           RL + YGMTE      +    
Sbjct: 294 HDLSS--------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF 345

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKE 400
                  K G  G  +   ++KI + E+G+       GEIC++   + K Y   P+ 
Sbjct: 346 AKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEA 402

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  218 bits (558), Expect = 6e-66
 Identities = 88/424 (20%), Positives = 156/424 (36%), Gaps = 65/424 (15%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 74

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 75  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126

Query: 120 LSTEDYREVLQNVASKSGAKFSLI--------PPVPNV-----SSETTVFDQSQAEKMDG 166
             ++   + + NV  K      +I            ++     S     F++        
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 186

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 187 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246

Query: 224 HGLFNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
            G+    L  L  G  V  M +F      R + Q ++             I +   VPT+
Sbjct: 247 FGM-FTTLGYLICGFRVVLMYRFEEELFLRSL-QDYK-------------IQSALLVPTL 291

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
           ++   +       +L          L  +  G + L   V +          + + YG+T
Sbjct: 292 FSFFAKSTLIDKYDLSN--------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWK 396
           E   AI     G  K G VG  +P  + K+ + ++G        GE+CV+ P +   Y  
Sbjct: 344 ETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN 403

Query: 397 LPKE 400
            P+ 
Sbjct: 404 NPEA 407

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  215 bits (550), Expect = 9e-65
 Identities = 83/399 (20%), Positives = 142/399 (35%), Gaps = 63/399 (15%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             YSY +    +  +   L +  L                     RI + ++   EF   
Sbjct: 51  VDYSYAEYLEKSCCLGKALQNYGLVV-----------------DGRIALCSENCEEFFIP 93

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI- 143
           V+   F G    P    Y   EL+H +  S  ++V S++   + +  V        +++ 
Sbjct: 94  VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153

Query: 144 -------PPVPNVSS-----ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
                       + +         F  S  + ++  R E  ALI+ +SG+TG PKGV  T
Sbjct: 154 LDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLT 213

Query: 192 HKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           H++I  +     +     + +     L  +P HH  G+    L  L  G  V  + KF  
Sbjct: 214 HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDE 272

Query: 249 ----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
               + + Q ++              T+   VPT++  L +       +L          
Sbjct: 273 ETFLKTL-QDYK-------------CTSVILVPTLFAILNKSELLNKYDLSN-------- 310

Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPG 363
           L  +  G + L   V +          + + YG+TE   AI     G  K G  G  +P 
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPL 370

Query: 364 VQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKE 400
            + K+ + ++         GE+CVK P L K Y   P+ 
Sbjct: 371 FKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  208 bits (533), Expect = 2e-62
 Identities = 72/405 (17%), Positives = 141/405 (34%), Gaps = 60/405 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF   +   +  G + V    S+  SE+ +    ++ +  +  +     DYR + +
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 131 NVASKSGAKFSLIPPVPNV-----SSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTG 183
            V SK       +P + N+     + E    +    E +        D A +  + G+TG
Sbjct: 143 QVQSK-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG 195

Query: 184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF 242
             K +  TH      ++   E      +  +L  LP+ H + L    +L  LYAG  V  
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
            P  S    +               E +T    VP +    +    +   +L +      
Sbjct: 256 SPSPSPDDAFPLIER----------EKVTITALVPPLAMVWMDAASSRRDDLSS------ 299

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL 361
             L+++  G +       ++ + + G  L + +GM E  V              T G P+
Sbjct: 300 --LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357

Query: 362 -PGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESRT 403
            P  + ++  D+   D   G  G +  + P   + Y+K  + +  
Sbjct: 358 SPYDESRVW-DDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  208 bits (533), Expect = 3e-62
 Identities = 64/402 (15%), Positives = 132/402 (32%), Gaps = 50/402 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            S+AI   ++  SY +L   +  +++ L    L                   G    +  
Sbjct: 45  HSLAIICGERQLSYIELDRLSTNLATRLAEKGLGK-----------------GDTALVQL 87

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF         +G + +    S+ + EL   +      +++ +         + + 
Sbjct: 88  PNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFID 147

Query: 131 NVASKSGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           ++   + +   ++            +                 ++ A    + G+TG PK
Sbjct: 148 SLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPK 207

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEFMPK 245
            +  TH   D  V+   E     S  + L  LP  H   L     L  L+AG  V   P 
Sbjct: 208 LIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
                 +   +             +   + VP+     ++       ++Q+        L
Sbjct: 268 PEPLNCFSIIQR----------HQVNMASLVPSAVIMWLEKAAQYKDQIQS--------L 309

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPLPGV 364
           +L+  G ++ P  + +Q   +   +L + +GM E  V          +   T G P+   
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 365 -QVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKESRT 403
            ++KI  DE   +   G +G +  + P  F  Y++ P+ +  
Sbjct: 370 DEIKIV-DEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  202 bits (516), Expect = 8e-58
 Identities = 78/426 (18%), Positives = 149/426 (34%), Gaps = 71/426 (16%)

Query: 3   VFKAAYKKGSMARDSVAI--RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           +F+   +          +        Y+Y  +   + +I++      +            
Sbjct: 67  IFQNISEFA----TKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQ---------- 112

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     + ++     EFV   L   F G  A      +  +E+      S+  +++
Sbjct: 113 -------NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLII 165

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV--FDQSQAEKMDGQRG--------E 170
           +   Y + ++ + +  G     I    +V        F +      +            +
Sbjct: 166 TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGL 226
           D   + Y+SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285

Query: 227 FNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
            + +L  L  GA +  MPKF +      I QR +             +T    VP +   
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELI-QRCK-------------VTVAPMVPPIVLA 331

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE-- 339
           + +  E    +L +        +R++  G++ L   +           +L + YGMTE  
Sbjct: 332 IAKSSETEKYDLSS--------IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383

Query: 340 ---FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
               +           K+G  G  +   ++KI + ++G   +    GEIC++   + K Y
Sbjct: 384 PVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY 443

Query: 395 WKLPKE 400
              P  
Sbjct: 444 LNNPAA 449

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  171 bits (436), Expect = 3e-48
 Identities = 77/419 (18%), Positives = 156/419 (37%), Gaps = 69/419 (16%)

Query: 6   AAYKKGSMARDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           A  +K      S A+        +  +++ +L+ ++ + +                    
Sbjct: 48  ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAA-------------------- 87

Query: 61  AVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
            VL+G CG     R+ +V     E+   +LG   +G I +P  +    +++L+ +  S  
Sbjct: 88  NVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--------- 167
             +++ ++  + +  VAS+  +    +     VS ++     +  + ++           
Sbjct: 148 KAIVAGDEVIQEVDTVASECPS----LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             ++ + I +TSGT+G PK   H++ S+  + +M        ++D          +  + 
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263

Query: 228 NALLAPLYAGATVEF--MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
            +L+ P   GA      +PKF    I +    SYP+          +  G P +Y  L+Q
Sbjct: 264 CSLMEPWALGACTFVHLLPKFDPLVILKTL-SSYPI---------KSMMGAPIVYRMLLQ 313

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
                    Q  S+     L+  +    +L    ++ W   TG  + E YG TE  +   
Sbjct: 314 ---------QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS-----PSLFKEYWKLP 398
                  K G +G       V+I +D+      G  G+I ++        +F  Y   P
Sbjct: 365 VSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  164 bits (416), Expect = 3e-45
 Identities = 86/431 (19%), Positives = 150/431 (34%), Gaps = 103/431 (23%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + +Y+QL   A  I++ L +   K                  G R+ ++  P    +   
Sbjct: 40  TMTYEQLDQHAKAIAATLQAEGAKP-----------------GDRVLLLFAPGLPLIQAF 82

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG  ++GCIAVP+     E        ++ +S   +VL   D+ +      +        
Sbjct: 83  LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---KFTADELNTNPK 139

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
              +P ++ E+   ++S + +    +  D A + YTSG+T  PKGV+ +H ++   +  +
Sbjct: 140 FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI 199

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVR-GIWQRWRESY 259
             ++           LP HH  GL   +L P+Y G     M    F      W +    Y
Sbjct: 200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKY 259

Query: 260 PVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLMMCGSSA 314
                         +G P           A D  ++       + L          G+  
Sbjct: 260 KAT----------ISGSP---------NFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE- 299

Query: 315 LPLPVMQQWETITGHRLLER--------------YGMTEFVMAISNPLRGAR-------- 352
              PV  + ET+      +               YG+ E  + ++    G+         
Sbjct: 300 ---PV--REETM--EHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAK 352

Query: 353 ---KAGTV----------------GNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLF 391
              +   V                GNP+    VKI + ++        VGEI V+S S+ 
Sbjct: 353 EQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVA 410

Query: 392 KEYWKLPKESR 402
           K YW  P+E+R
Sbjct: 411 KGYWNQPEETR 421

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  156 bits (397), Expect = 2e-43
 Identities = 78/435 (17%), Positives = 132/435 (30%), Gaps = 108/435 (24%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + ++ QL    L ++  L                     G  G R+ I A    E+V   
Sbjct: 58  TLTWSQLYRRTLNVAQELSR------------------CGSTGDRVVISAPQGLEYVVAF 99

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG   +G IAVPL++            V+ DS    +L+T    + +    ++   +   
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--- 156

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
             P   +  +    D               A + YTSG+T  P GVV +H+++    + L
Sbjct: 157 -SPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL 215

Query: 203 TEAWEYTS------ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR---GIWQ 253
              +   +          +  LP +H  GL   + AP+  G         S       W 
Sbjct: 216 MSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWM 275

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLM 308
               S             AF+  P         +E      +  +              +
Sbjct: 276 HLMASDFH----------AFSAAPNF------AFELA---ARRTTDDDMAGRDLGNILTI 316

Query: 309 MCGSSALPLPVMQQWETITGHRLLER--------------YGMTEFVMAISNPLRG---- 350
           + GS      V  Q  TI   R  +R              Y + E  + ++    G    
Sbjct: 317 LSGSE----RV--QAATI--KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368

Query: 351 ---------------------ARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKS 387
                                A    +   P   + V+I + ++  +     VGEI V  
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPI-VRIVDSDTCIECPDGTVGEIWVHG 427

Query: 388 PSLFKEYWKLPKESR 402
            ++   YW+ P ES 
Sbjct: 428 DNVANGYWQKPDESE 442

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  136 bits (346), Expect = 1e-35
 Identities = 77/427 (18%), Positives = 148/427 (34%), Gaps = 95/427 (22%)

Query: 15  RDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
            + +A+       ++K +++  L   + + ++    + +                   G 
Sbjct: 70  PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGK-----------------GD 112

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--- 126
            + +  K  ++F   +LG    G IAVP        ++++ +  + + M++   +     
Sbjct: 113 YVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPE 172

Query: 127 ---EVLQNVASKSGAKFSLIPPVPN---------VSSETTVFDQSQAEKMDGQRGEDPAL 174
              E           K  +   V             S       +          ED  L
Sbjct: 173 QVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN---EDICL 229

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH---------- 224
           + ++SGT G PK V H +      +  +  A       ++   +    +H          
Sbjct: 230 VYFSSGTAGFPKMVEHDNT---YPLGHILTA-------KYWQNVEDDGLHYTVADSGWGK 279

Query: 225 GLFNALLAPLYAGATVEFM---PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
            ++  L     AG  V F+    +F  + + ++    Y V         T F   PT+Y 
Sbjct: 280 CVWGKLYGQWIAGCAV-FVYDYDRFEAKNMLEKA-SKYGV---------TTFCAPPTIYR 328

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-P-VMQQWETITGHRLLERYGMTE 339
            LI+         +  S      L+      +  PL P V  ++   TG +L+E +G TE
Sbjct: 329 FLIK---------EDLSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377

Query: 340 FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSP-----SLFK 392
            V+ I+       K G++G P PG ++++  D  G   +    GEI + +       LF 
Sbjct: 378 TVVTIATFPWMEPKPGSIGKPTPGYKIELM-DRDGRLCEVGEEGEIVINTMEGKPVGLFV 436

Query: 393 EYWKLPK 399
            Y K P+
Sbjct: 437 HYGKDPE 443

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  121 bits (305), Expect = 3e-30
 Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 37/249 (14%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
               + YT+GTTG PKGVV++H+++   +    L +    +  D  L  +P+ HV+    
Sbjct: 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 236

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
              A L     V   P+     + + +            E +T   GVPT++  L    E
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDG----------EGVTFTAGVPTVWLALADYLE 286

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISN 346
           +    L        K LR ++ G SA P  ++ ++E + G  + + YG+TE   V+  + 
Sbjct: 287 STGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNF 337

Query: 347 PLRG---------ARKAGTVGNPLPGVQVKIAEDESGS----DAAGVGEICVKSPSLFKE 393
                               G P+P V++++A DE G     D   +GE+ +K P +   
Sbjct: 338 VKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA-DEEGRPVPKDGKALGEVQLKGPWITGG 396

Query: 394 YWKLPKESR 402
           Y+   + +R
Sbjct: 397 YYGNEEATR 405

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  118 bits (297), Expect = 9e-29
 Identities = 78/390 (20%), Positives = 142/390 (36%), Gaps = 80/390 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D+ A+    ++ SY +L   A RI+  L                     G G G+ + + 
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQK------------------HGAGKGSVVALY 520

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++ +E    +  
Sbjct: 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                      +     + T F++  ++        DPA I+YTSGTTGKPKG + TH +
Sbjct: 581 T-------GTTL--FIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK---FS 247
           I   V+   +   ++  D FL           F+A      A +   A +    +     
Sbjct: 632 IQGLVKH-VDYMAFSDQDTFLSVSNYA-----FDAFTFDFYASMLNAARLIIADEHTLLD 685

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +     +          E +        ++  L             A     K LR 
Sbjct: 686 TERLTDLILQ----------ENVNVMFATTALFNLLTD-----------AGEDWMKGLRC 724

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLP 362
           ++ G     +P +++    +   +L+  YG TE  V A ++ +     + +    G P+ 
Sbjct: 725 ILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPIS 784

Query: 363 GVQVKIAEDESGSDAAG-------VGEICV 385
              V I       +          VGE+C+
Sbjct: 785 NASVYIL------NEQSQLQPFGAVGELCI 808

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  110 bits (277), Expect = 1e-26
 Identities = 70/400 (17%), Positives = 139/400 (34%), Gaps = 69/400 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D        +  +Y QL   +  I++ + S  L                    + + +  
Sbjct: 19  DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLA-----------------KSPVLVFG 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +++ +A  +    SG   +P+ +      +L ++  +  S++++ E++   ++ +   
Sbjct: 62  AQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--- 118

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                     V     E+    +   E+    +G+D   I++TSGTTG+PKGV  +H ++
Sbjct: 119 --------SLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170

Query: 196 DAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR 249
            +    + E   +      Q L   P       F+         L  G T+  +PK  V 
Sbjct: 171 LSFTNWMIEDAAFDVPKQPQMLAQPPYS-----FDLSVMYWAPTLALGGTLFALPKELVA 225

Query: 250 ---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306
               ++    +            +  +T  P+     +   +    ++ A        L 
Sbjct: 226 DFKQLFTTIAQ----------LPVGIWTSTPSFADMAMLSDDFCQAKMPA--------LT 267

Query: 307 LMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNP 360
                   L +   ++  E     +++  YG TE    + AI            +  G P
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327

Query: 361 LPGVQVKIAEDESGSDA-AGV-GEICVKSPSLFKEYWKLP 398
            P     I  DE G +  +G  GEI V  P++ K Y   P
Sbjct: 328 KPDSPTYII-DEDGKELSSGEQGEIIVTGPAVSKGYLNNP 366

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  109 bits (275), Expect = 3e-26
 Identities = 56/345 (16%), Positives = 106/345 (30%), Gaps = 49/345 (14%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            I +    S    A ++G   SG   VP+    P      ++ DS  +M    ++  + +
Sbjct: 81  AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV 140

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
           +           L     +     +  D S             A ++YTSG+TG PKGV 
Sbjct: 141 EL----PPETKVLDTKNQSFIENLSTQDTSDILN--NYPENLDAYLLYTSGSTGTPKGVR 194

Query: 190 HTHKSI--------DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAG 237
            +  ++             +  ++ E     +FL           F+     +      G
Sbjct: 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA-----FDVHIGEMFLAWRFG 249

Query: 238 ATVEFMPKFSVR-GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
                  + S+   + + +RE            +T    VP++  +              
Sbjct: 250 LCAVTGERLSMLDDLPRTFRE----------LGVTHAGIVPSLLDQTGL----------- 288

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAG 355
                A  L  +  G   +     Q W +     L+  YG TE  +   +  +       
Sbjct: 289 -VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347

Query: 356 TVGNPLPGVQVKIAEDESGSDA-AGV-GEICVKSPSLFKEYWKLP 398
            +G+PL      +    S      G+ GE+ ++   +   Y   P
Sbjct: 348 CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRP 392

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  106 bits (266), Expect = 4e-25
 Identities = 66/404 (16%), Positives = 137/404 (33%), Gaps = 78/404 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            + A R+  +S +Y +L   + R ++ +                   ++G   + I +  
Sbjct: 16  QTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYG 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  +G   +P+ LS P   +  ++  S   +++               
Sbjct: 60  HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQ-- 117

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKGVVHTHKS 194
                     +  VS+E  + ++  +   D   +  +   I+YTSG+TG PKGV  +  +
Sbjct: 118 ----------IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN 167

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +    +   +  +    FL+  P       F+     L   L +G T+  + K +V  
Sbjct: 168 LQSFTDWICADFPVSGGKIFLNQAPFS-----FDLSVMDLYPCLQSGGTLHCVTKDAVNK 222

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +++  ++            +  +T  P+     +             S         
Sbjct: 223 PKVLFEELKK----------SGLNVWTSTPSFVQMCLM--------DPGFSQDLLPHADT 264

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            M     LP+ V +   E     ++   YG TE    V ++        ++ ++  G   
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAK 324

Query: 362 PGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLP 398
           P + + I       D  G        GEI +  PS+ + Y   P
Sbjct: 325 PDMNIFIM------DEEGQPLPEGEKGEIVIAGPSVSRGYLGEP 362

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  106 bits (266), Expect = 6e-25
 Identities = 64/385 (16%), Positives = 108/385 (28%), Gaps = 76/385 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
              AIR    S  Y QL  SA ++S  L                  +      G  +G+ 
Sbjct: 42  HREAIRDRFGSVDYRQLLDSAEQLSDYL------------------LEHYPQPGVCLGVY 83

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S E +  +L    SG   + + L  P +    +    D  ++L           +  
Sbjct: 84  GEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP- 142

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                               +     +        +  A I ++SGTTG+PK +  TH  
Sbjct: 143 --------------CVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG 188

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK--FSV 248
           I            +    +FL   PL      F+A    +   L  G             
Sbjct: 189 ITRLCLG-QSFLAFAPQMRFLVNSPLS-----FDAATLEIWGALLNGGCCVLNDLGPLDP 242

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + Q   E              +     +++  L+                    LR +
Sbjct: 243 GVLRQLIGE----------RGADSAWLTASLFNTLVD-----------LDPDCLGGLRQL 281

Query: 309 MCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLPG 363
           + G   L +P +++         L+  YG TE       + +            G  + G
Sbjct: 282 LTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAG 341

Query: 364 VQVKIAEDESGSD--AAGV-GEICV 385
             V +  DE G +       GEI  
Sbjct: 342 TAVLLL-DEHGQEIAEPDRAGEIVA 365

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  104 bits (262), Expect = 2e-24
 Identities = 75/407 (18%), Positives = 141/407 (34%), Gaps = 94/407 (23%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           ++VAI  + +  +Y +L   A +++ +                      G G    +GI+
Sbjct: 54  NNVAIVCENEQLTYHELNVKANQLARIFIEK------------------GIGKDTLVGIM 95

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++     
Sbjct: 96  MEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI----- 150

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGV 188
                          + +  +F++   +  +G       +  D A ++YTSGTTG PKG 
Sbjct: 151 ----------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMP 244
           +  HK I         +   T  D+      +      F+A    +   L  GA++  + 
Sbjct: 201 MLEHKGISNLKVFFENSLNVTEKDRIGQFASIS-----FDASVWEMFMALLTGASLYIIL 255

Query: 245 K---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
           K          Q   +          + IT  T  PT               +       
Sbjct: 256 KDTINDFVKFEQYINQ----------KEITVITLPPTY--------------VVHLDPER 291

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV--G 358
              ++ ++   SA    ++ +W        +  YG TE  + A +          +V  G
Sbjct: 292 ILSIQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349

Query: 359 NPLPGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLP 398
            P+   Q+ I       D           GE+C+    L + YWK P
Sbjct: 350 APIQNTQIYIV------DENLQLKSVGEAGELCIGGEGLARGYWKRP 390

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  102 bits (258), Expect = 4e-24
 Identities = 68/404 (16%), Positives = 124/404 (30%), Gaps = 77/404 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D  A        +Y QL   +  ++  + S                        + I + 
Sbjct: 16  DQTAFVWRDAKITYKQLKEDSDALAHWISS------------------EYPDDRSPIMVY 57

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E +   LG   +G   +P+ LS P   +  +  +S   ++LS          V  
Sbjct: 58  GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVR- 116

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                   I    N+         +        +G++   I+YTSG+TG PKGV  T+  
Sbjct: 117 --------IVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +  +   E +   +   FL+  P       F+     +   L  G T+  + K  +  
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFS-----FDLSVMDIYPSLVTGGTLWAIDKDMIAR 223

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              ++    +            I  +T  P+     +           + S S    ++ 
Sbjct: 224 PKDLFASLEQ----------SDIQVWTSTPSFAEMCLM--------EASFSESMLPNMKT 265

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            +     LP  V ++  E      ++  YG TE    V  I        +  ++  G   
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325

Query: 362 PGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLP 398
              ++ I          G        GEI +  PS+   Y   P
Sbjct: 326 SDCRLLIM------KEDGTIAPDGEKGEIVIVGPSVSVGYLGSP 363

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 99.8 bits (248), Expect = 2e-23
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 30/249 (12%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH- 221
           G   +    +  + GTTG PK VV     I+A +              +   L  +P   
Sbjct: 87  GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGP 146

Query: 222 HVHGLFNALLAPLYAGA--TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA---------I 270
           H+ G  N   A    G   +++  P++  R + +    +     +   +          I
Sbjct: 147 HIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI 206

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW--ETITG 328
                 P +   L++  E +    Q+        L  +  G + L L  ++    E +  
Sbjct: 207 RFLVTTPPVLRELLKRPEVVLQMKQS--------LAQITLGGTELNLDEIKFIASEILPD 258

Query: 329 HRLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD-AAG-VGEICV 385
                 YG T  + ++ S  +    +     +  P +   + +  +      G  G + V
Sbjct: 259 CEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV 318

Query: 386 KSPSLFKEY 394
               L    
Sbjct: 319 T--HLSPWA 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 6e-10
 Identities = 62/398 (15%), Positives = 121/398 (30%), Gaps = 102/398 (25%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M   K   ++ SM      I    + Y+ +Q+ +    +S L     L+    + +   +
Sbjct: 95  MSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKN 152

Query: 61  AVLAG--GCG--------AR-IGIVAKPSFEFVAGVLGTWFS-GCIAVPLALSYPESELL 108
            ++ G  G G             +  K  F     +   W +      P  +     +LL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF--WLNLKNCNSPETVLEMLQKLL 206

Query: 109 HVM-------HDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSSETTV--FD- 157
           + +        D   ++ L     +  L+ +      +  L+  V  NV +      F+ 
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264

Query: 158 QSQAEKMDGQRGEDPALIVYT--SGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQ 213
             +             +++ T     T        TH S+D     LT  E        +
Sbjct: 265 SCK-------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--K 309

Query: 214 FLHC----LP--LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG 267
           +L C    LP  +   +    +++A        E +        W  W+    VN ++  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLAT--WDNWKH---VNCDKLT 356

Query: 268 EAITAFTGV--PT----MYTRL--------------------IQGYEAMD--TELQAASA 299
             I +   V  P     M+ RL                    +   + M    +L   S 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITG-HR-LLERY 335
              KQ +       ++ L +  + E     HR +++ Y
Sbjct: 417 -VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            + Q E M+    EDP  I+YTSG+TGKPKGV+HT 
Sbjct: 246 PEHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTT 278

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
              +D    EDP  ++YTSG+TG PKGV H+
Sbjct: 256 CTPVDS---EDPLFLLYTSGSTGAPKGVQHS 283

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 53/190 (27%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGL 226
           +  + I  +SGTTGKP  V +T   ID    ++  +         D+          +GL
Sbjct: 90  DRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG----YGL 145

Query: 227 FNALLAPLYA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
           F   L   Y     G TV            + +  F                        
Sbjct: 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRP---------------------- 183

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGH 329
                 P+    +    E    +   +S      LR+ + G+       M+   E   G 
Sbjct: 184 DIIMVTPSYMLSIADEIERQGLDPVQSS------LRIGIFGAEPWT-NDMRVAIEQRMGI 236

Query: 330 RLLERYGMTE 339
             ++ YG++E
Sbjct: 237 DAVDIYGLSE 246

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTG P  +VH+   +D+   ++            D F +       +G+F   L   
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG----YGMFTGGLGFQ 149

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G               +F+  F                        TA   +P+
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKT----------------------TALHAIPS 187

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
              RL + ++    + +  +      L+ ++ G+        ++  E +   +    +GM
Sbjct: 188 YAIRLAEVFQEEGIDPRETT------LKTLVIGAEPHT-DEQRRKIERMLNVKAYNSFGM 240

Query: 338 TE 339
           TE
Sbjct: 241 TE 242

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTGKP  V +T + ID    +   +         D   +       +GLF   L   
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG----YGLFTGGLGIH 155

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G  V            + +  F                              P+
Sbjct: 156 YGAERLGCMVVPMSGGQTEKQVQLIRDFEP----------------------KIILVTPS 193

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
               LI        +   +S      L++ + G+       ++   ET  G   L+ YG+
Sbjct: 194 YMLNLIDEMVRQGMDPAESS------LKIGIFGAEPWT-QALRNEVETRVGIDALDIYGL 246

Query: 338 TE 339
           +E
Sbjct: 247 SE 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.96
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.95
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	94.37
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	93.37
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.23
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	92.08
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.98
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.69
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	87.51
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.85
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	82.44
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	81.85
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	81.49
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	80.68

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.6e-59  Score=460.78  Aligned_cols=374  Identities=22%  Similarity=0.290  Sum_probs=315.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +++.+.|.++++++||++|+++.  ++++||+||.++++++|+.|.+.                 |+++||+|+|+++|+
T Consensus        22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~   84 (536)
T 3ni2_A           22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKI-----------------GIQQGDVIMLFLPSS   84 (536)
T ss_dssp             CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred             CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence            57899999999999999999985  68999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC-CCccccc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD  157 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  157 (409)
                      ++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.............+....... .......
T Consensus        85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (536)
T 3ni2_A           85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ  164 (536)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred             HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence            999999999999999999999999999999999999999999999887777666544444433332211100 0000000


Q ss_pred             -cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 015313          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (409)
Q Consensus       158 -~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~  232 (409)
                       ...........++++++|+|||||||.||+|.++|+++.+.+.....    .+.+.++|++++.+|++|..++...++.
T Consensus       165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (536)
T 3ni2_A          165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC  244 (536)
T ss_dssp             SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred             ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence             01111223456789999999999999999999999999988776543    3467889999999999999999777889


Q ss_pred             HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ....++++||.+++||
T Consensus       245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG  306 (536)
T 3ni2_A          245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG  306 (536)
T ss_dssp             HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred             HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence            9999999999999999999988          778999999999999999987632        2345788999999999


Q ss_pred             CCCCHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEE
Q 015313          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEIC  384 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~-----~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~  384 (409)
                      +++++++.+++++.+ ++++++.||+||++++++..     .......+++|+|+++++++|+| +++++++.| .|||+
T Consensus       307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~  386 (536)
T 3ni2_A          307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC  386 (536)
T ss_dssp             SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEE
Confidence            999999999999999 89999999999998654422     22345678899999999999999 557888888 89999


Q ss_pred             EeCcchhhhhcCCCcccchhh--cccC
Q 015313          385 VKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       385 v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      ++||+++.||||+|+.|++.+  +|||
T Consensus       387 v~g~~v~~GY~~~p~~t~~~~~~~g~~  413 (536)
T 3ni2_A          387 IRGDQIMKGYLNDPEATSRTIDKEGWL  413 (536)
T ss_dssp             EESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred             EeCcccchhhcCChhHHHhhccCCCce
Confidence            999999999999999999984  7897

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1e-59  Score=459.93  Aligned_cols=369  Identities=31%  Similarity=0.517  Sum_probs=308.3

Q ss_pred             HHHHHHhcccCCCeeEEE---eCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~---~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      .+.|.+.++++||++|+.   ++++++||+||.++++++|+.|.++                 |+++||+|+|+++|+++
T Consensus         3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   65 (503)
T 4fuq_A            3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE   65 (503)
T ss_dssp             CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            457888999999999888   4678999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.............+.................
T Consensus        66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (503)
T 4fuq_A           66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE  145 (503)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred             HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999987665544443333332222211110000000000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..+++..++.+++.|+++
T Consensus       146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~  225 (503)
T 4fuq_A          146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM  225 (503)
T ss_dssp             CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred             CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence            11122346789999999999999999999999999999999999999999999999999999999766677889999999


Q ss_pred             EEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  320 (409)
                      ++.+.+++..+++.          ++  ++|+++++|+++..+++...        .....++++|.+++||+++++++.
T Consensus       226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~~  285 (503)
T 4fuq_A          226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADTH  285 (503)
T ss_dssp             EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHHH
T ss_pred             EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHHH
Confidence            99999999999988          44  79999999999999987632        233467899999999999999999


Q ss_pred             HHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEEEeCcchhhhhcCCC
Q 015313          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLP  398 (409)
Q Consensus       321 ~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~v~g~~~~~gY~~~~  398 (409)
                      ++|.+.+++++++.||+||+++.+..........+++|+|+++++++|+| +++++++.| .|||+++||+++.||||+|
T Consensus       286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~  365 (503)
T 4fuq_A          286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP  365 (503)
T ss_dssp             HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCH
T ss_pred             HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCCh
Confidence            99999999999999999999977665555566788999999999999999 778889888 8999999999999999999


Q ss_pred             cccchhh--cccC
Q 015313          399 KESRTLS--SCLY  409 (409)
Q Consensus       399 ~~t~~~~--~g~~  409 (409)
                      +.|++.|  ||||
T Consensus       366 ~~t~~~f~~~g~~  378 (503)
T 4fuq_A          366 EKTKSEFRDDGFF  378 (503)
T ss_dssp             HHHHHTBCTTSCE
T ss_pred             hhhHhhhCCCCCe
Confidence            9999984  8997

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=4.4e-59  Score=459.31  Aligned_cols=372  Identities=18%  Similarity=0.235  Sum_probs=308.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.++++++||++|+++.++++||+||.++++++|+.|++                 +|+++||+|+|+++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~   87 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE   87 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence            368899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhccC-CceeccCCCCCCCCCcc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSG-AKFSLIPPVPNVSSETT  154 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (409)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++++.     ...+..+..... ...+......  .....
T Consensus        88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  165 (539)
T 1mdb_A           88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLP  165 (539)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--TTSEE
T ss_pred             HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--cchhh
Confidence            999999999999999999999999999999999999999998753     122333322221 1111111100  00111


Q ss_pred             cccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 015313          155 VFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA  232 (409)
Q Consensus       155 ~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~  232 (409)
                      .... ..........++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+++.. .++.
T Consensus       166 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~  245 (539)
T 1mdb_A          166 LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG  245 (539)
T ss_dssp             GGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred             hhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHH
Confidence            1000 0001123346789999999999999999999999999999988888888999999999999999999864 6889


Q ss_pred             HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ....++++||.+++||
T Consensus       246 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~~~~gG  307 (539)
T 1mdb_A          246 VLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAAS--------SRRDDLSSLQVLQVGG  307 (539)
T ss_dssp             HHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHHH--------HCCCCCTTCCEEEEES
T ss_pred             HHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCcc--------ccCCCccceeEEEEcC
Confidence            9999999999999999999988          778999999999999999987632        2345689999999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccccCCC-CCCccccccccCC-eEEEEeeCCCCCCCCc-cceEEEeCcc
Q 015313          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPG-VQVKIAEDESGSDAAG-VGEICVKSPS  389 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-~~~~~~~G~p~~~-~~~~ivd~~~~~~~~~-~Gel~v~g~~  389 (409)
                      +++++++.+++.+.+|+++++.||+||++..+...... ....+++|+|+++ .+++|+|+++++++.| .|||+|+||+
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~  387 (539)
T 1mdb_A          308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPY  387 (539)
T ss_dssp             SCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTT
T ss_pred             CCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcc
Confidence            99999999999999999999999999976444332211 2345789999975 5899999999999988 8999999999


Q ss_pred             hhhhhcCCCcccchhh--cccC
Q 015313          390 LFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       390 ~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++||||+|++|++.|  ||||
T Consensus       388 v~~GY~~~~~~t~~~f~~~g~~  409 (539)
T 1mdb_A          388 TIRGYYKAEEHNAASFTEDGFY  409 (539)
T ss_dssp             SCSSCTTCHHHHHHHBCTTSCE
T ss_pred             cchhhcCChhhhhhhccCCCCe
Confidence            9999999999999985  8997

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5e-59  Score=460.10  Aligned_cols=374  Identities=22%  Similarity=0.324  Sum_probs=314.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC--------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~--------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      +++.+.|.++++++||++|+++.+        +++||+||.++++++|+.|.+.                 |+++||+|+
T Consensus        19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~   81 (549)
T 3g7s_A           19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG   81 (549)
T ss_dssp             CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence            578899999999999999999876        8999999999999999999994                 999999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (409)
                      |+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+................. .....
T Consensus        82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  160 (549)
T 3g7s_A           82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL  160 (549)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred             EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence            99999999999999999999999999999999999999999999999999998888777665554332222111 11100


Q ss_pred             cccccc-chhhhccCCC-CCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313          153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                      ...... .......... ++++++|+|||||||.||+|.++|+++...+......+++.+.|++++.+|++|..++.. +
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~  239 (549)
T 3g7s_A          161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V  239 (549)
T ss_dssp             HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred             HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence            000000 0000111222 389999999999999999999999999999999888899999999999999999999865 7


Q ss_pred             HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      +.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+++......      ...+++++|.+++
T Consensus       240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~  303 (549)
T 3g7s_A          240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT  303 (549)
T ss_dssp             TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred             HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence            888999999999999999999998          788999999999999999988633211      1246789999999


Q ss_pred             eCCCCCHHHHHHHHHH----hC---CccccccccccccccccccC-CCCCCccccccccCCeEEEEee-CCCCCCCCc-c
Q 015313          311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V  380 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~----~~---~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~  380 (409)
                      ||+++++++.+++.+.    ++   +++++.||+||++++++... ......+++|+|+++++++|+| +++++++.| .
T Consensus       304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~  383 (549)
T 3g7s_A          304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES  383 (549)
T ss_dssp             ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred             CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence            9999999999999887    66   89999999999987665433 2335678899999999999999 778888888 8


Q ss_pred             ceEEEeCcchhhhhcCCCcccchhh----cc--cC
Q 015313          381 GEICVKSPSLFKEYWKLPKESRTLS----SC--LY  409 (409)
Q Consensus       381 Gel~v~g~~~~~gY~~~~~~t~~~~----~g--~~  409 (409)
                      |||+|+||+++.||||+|++|++.+    ||  ||
T Consensus       384 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~  418 (549)
T 3g7s_A          384 GEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF  418 (549)
T ss_dssp             EEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred             eEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence            9999999999999999999999885    56  87

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.2e-59  Score=456.46  Aligned_cols=371  Identities=23%  Similarity=0.341  Sum_probs=309.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCc--cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~--~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +|+.+.|.++++++||++|+++.++  ++||+||.++++++|+.|.+.                 |+++||+|+|+++|+
T Consensus        16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~   78 (517)
T 3r44_A           16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTAL-----------------GIAKGDRVALLMPNS   78 (517)
T ss_dssp             GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEcCCC
Confidence            4788999999999999999999776  999999999999999999995                 999999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccc-cc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV-FD  157 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  157 (409)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+..........+.. ......... ..
T Consensus        79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  157 (517)
T 3r44_A           79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW-IGADSLAERLRS  157 (517)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE-EEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc-cCcccHHHHhhc
Confidence            9999999999999999999999999999999999999999999998887776654432211000000 000000000 00


Q ss_pred             cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      ...........++++++|+|||||||.||+|.++|+++.+.+......++++.+|++++.+|++|..++...++ +++.|
T Consensus       158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~-~~~~G  236 (517)
T 3r44_A          158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIF-SAMRG  236 (517)
T ss_dssp             CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHH-HHHHT
T ss_pred             cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHH-HHhcC
Confidence            00011122346789999999999999999999999999999999999999999999999999999999865444 45599


Q ss_pred             CEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      +++++.+.+++..+++.          ++++++|++.++|+++..+.+..        .....++++||.+++||+++++
T Consensus       237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~  298 (517)
T 3r44_A          237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE  298 (517)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred             eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence            99999999999999998          77799999999999999998752        3345678899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccc--cCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhc
Q 015313          318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYW  395 (409)
Q Consensus       318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~--~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~  395 (409)
                      ++.+.+.+. ++++++.||+||+++.++.  ........+++|+|.++++++|+|++++.++.|.|||+++||+++.|||
T Consensus       299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~  377 (517)
T 3r44_A          299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYW  377 (517)
T ss_dssp             HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEET
T ss_pred             HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhC
Confidence            999999887 9999999999999865442  2223456789999999999999999999888889999999999999999


Q ss_pred             CCCcccchh-hcccC
Q 015313          396 KLPKESRTL-SSCLY  409 (409)
Q Consensus       396 ~~~~~t~~~-~~g~~  409 (409)
                      |+|++|++. .+|||
T Consensus       378 ~~p~~t~~~f~~g~~  392 (517)
T 3r44_A          378 NRPEATRDAFDNGWF  392 (517)
T ss_dssp             TCHHHHHHTEETTEE
T ss_pred             CChhhhHhhhcCCCE
Confidence            999999998 68887

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.4e-58  Score=456.92  Aligned_cols=373  Identities=21%  Similarity=0.265  Sum_probs=307.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEE---e--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~---~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      +|+.+.|.++++++||++|++   +  .++++||+||.++++++|+.|++                 +|+++||+|+|++
T Consensus        20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~   82 (550)
T 3rix_A           20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS   82 (550)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence            478899999999999999976   3  46799999999999999999999                 4999999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCCCCc
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSET  153 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  153 (409)
                      +|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+..........  .+.+..........
T Consensus        83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (550)
T 3rix_A           83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ  162 (550)
T ss_dssp             SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred             CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence            9999999999999999999999999999999999999999999999998888777665544321  12222111111000


Q ss_pred             cccccc-----------hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecC
Q 015313          154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP  219 (409)
Q Consensus       154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p  219 (409)
                      ...+..           .........++++++|+|||||||.||+|.++|+++...+......   .++.++|++++.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  242 (550)
T 3rix_A          163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP  242 (550)
T ss_dssp             BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred             cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence            000000           0001111235789999999999999999999999999888776654   46778999999999


Q ss_pred             chhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (409)
Q Consensus       220 l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~  299 (409)
                      ++|..+++ .++.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+++...        ...
T Consensus       243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~  303 (550)
T 3rix_A          243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK  303 (550)
T ss_dssp             TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred             HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence            99999986 47888999999999999999999998          788999999999999999987632        234


Q ss_pred             hhhccceEEEeeCCCCCHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCccccccccCCeEEEEeeC-CCCCCC
Q 015313          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDA  377 (409)
Q Consensus       300 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~-v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~  377 (409)
                      .++++||.+++||+++++++.+++.+.++.. +++.||+||+++.++..+......+++|+|+|+++++|+|+ ++++++
T Consensus       304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~  383 (550)
T 3rix_A          304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG  383 (550)
T ss_dssp             SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCC
T ss_pred             cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCC
Confidence            5688999999999999999999999999875 88999999999877666555667889999999999999994 578888


Q ss_pred             Cc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          378 AG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       378 ~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      .| .|||+|+||+++.||||+|++|++.+  ||||
T Consensus       384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~  418 (550)
T 3rix_A          384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWL  418 (550)
T ss_dssp             TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred             CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCe
Confidence            88 89999999999999999999999984  8997

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.3e-58  Score=456.36  Aligned_cols=374  Identities=16%  Similarity=0.231  Sum_probs=308.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.++++++||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+|+++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~   92 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE   92 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence            4678999999999999999999999999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-Ccee-ccCCCCCCCCCc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFS-LIPPVPNVSSET  153 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~-~~~~~~~~~~~~  153 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.+..     .....+..... .... ............
T Consensus        93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (544)
T 3o83_A           93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL  172 (544)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred             HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence            9999999999999999999999999999999999999999987543     22222222211 1111 111110000000


Q ss_pred             ccccc--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HH
Q 015313          154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL  230 (409)
Q Consensus       154 ~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~  230 (409)
                      .....  ..........++++++|+|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~  252 (544)
T 3o83_A          173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA  252 (544)
T ss_dssp             HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred             hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence            00000  0001113346789999999999999999999999999999999999999999999999999999998854 57


Q ss_pred             HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++....        ...++++||.+++
T Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~i~~  314 (544)
T 3o83_A          253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAAQ--------YKDQIQSLKLLQV  314 (544)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHTT--------THHHHTTCCEEEE
T ss_pred             HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchhh--------ccccCCcceEEEE
Confidence            889999999999999999999988          7889999999999999999886332        3346889999999


Q ss_pred             eCCCCCHHHHHHHHHHhCCccccccccccccccccccCC-CCCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeC
Q 015313          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKS  387 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g  387 (409)
                      ||+++++++.+++.+.+++++++.||+||+++.+..... ......++|+|+ ++++++|+|+++++++.| +|||+++|
T Consensus       315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g  394 (544)
T 3o83_A          315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRG  394 (544)
T ss_dssp             ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEec
Confidence            999999999999999999999999999998865543322 123456899996 899999999999999988 89999999


Q ss_pred             cchhhhhcCCCcccchhh--cccC
Q 015313          388 PSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       388 ~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      |+++.||||+|+.|++.+  ||||
T Consensus       395 ~~v~~GY~~~~~~t~~~f~~~g~~  418 (544)
T 3o83_A          395 PYTFCGYYQSPEHNSQVFDEDNYY  418 (544)
T ss_dssp             TTSCSCCTTCHHHHHHHBCTTCCE
T ss_pred             CCcchhhcCChhhhhhhCCCCCCe
Confidence            999999999999999995  7897

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.8e-58  Score=449.45  Aligned_cols=363  Identities=20%  Similarity=0.276  Sum_probs=294.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~---------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (409)
                      +++.+.|.++++++||++|+++.+         +++||+||.++++++|+.|++.                 |+ +||+|
T Consensus        24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V   85 (480)
T 3t5a_A           24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV   85 (480)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred             ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence            578999999999999999999855         7999999999999999999995                 85 99999


Q ss_pred             EEEeCCCHHHHHHHHHHHhhCcEEEeCCC---CCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC----ceeccC
Q 015313           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP  144 (409)
Q Consensus        72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~  144 (409)
                      +|+++|+++++++++||+++|++++|+++   .++.+++.++++.++++++|++.+....+.........    ....+.
T Consensus        86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (480)
T 3t5a_A           86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD  165 (480)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred             EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence            99999999999999999999999999998   78899999999999999999999887766654332211    111111


Q ss_pred             CCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCC------CCeEEEec
Q 015313          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL  218 (409)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~d~~l~~~  218 (409)
                      ....        ............++++++|+|||||||.||+|.++|+++...+......+....      +|++++.+
T Consensus       166 ~~~~--------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~  237 (480)
T 3t5a_A          166 LLDL--------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL  237 (480)
T ss_dssp             GSCT--------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred             cccc--------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence            1000        001111233456789999999999999999999999999999988888777777      89999999


Q ss_pred             CchhHHHHHHHHHHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHH
Q 015313          219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL  294 (409)
Q Consensus       219 pl~~~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~  294 (409)
                      |++|..+++..++.+++.|+++++.+..    ++..+++.          ++++++| +..+|+++..++.......   
T Consensus       238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~~---  303 (480)
T 3t5a_A          238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTDD---  303 (480)
T ss_dssp             CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCTG---
T ss_pred             CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCcc---
Confidence            9999999877789999999999999764    78888888          8999999 8899999888876422111   


Q ss_pred             HHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccCCC------------------
Q 015313          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------  350 (409)
Q Consensus       295 ~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~~~------------------  350 (409)
                       .....++++||.+++||+++++++.++|.+.++      +.+++.||+||+++.++.....                  
T Consensus       304 -~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  382 (480)
T 3t5a_A          304 -DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA  382 (480)
T ss_dssp             -GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred             -cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence             234467899999999999999999999999884      3799999999998766543221                  


Q ss_pred             -------CCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313          351 -------ARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS  405 (409)
Q Consensus       351 -------~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~  405 (409)
                             .....++|+|++ ++++|+|++ +++++.| +|||+|+||++++||||+|++|++.|
T Consensus       383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f  445 (480)
T 3t5a_A          383 KPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTF  445 (480)
T ss_dssp             CCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHH
T ss_pred             eecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHH
Confidence                   134568999999 999999987 6888888 89999999999999999999999987

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.9e-58  Score=454.80  Aligned_cols=371  Identities=19%  Similarity=0.286  Sum_probs=309.5

Q ss_pred             hHH-HHHHHhcccCCCeeEEEe-----CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            2 EVF-KAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         2 ~~~-~~l~~~~~~~~~~~a~~~-----~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      |+. +.|.++++++||++|+++     ..+++||+||.++++++|+.|++.                 |+++||+|+|++
T Consensus        56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~-----------------Gv~~Gd~V~l~~  118 (580)
T 3etc_A           56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-----------------GIGKGDYVMLTL  118 (580)
T ss_dssp             CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEEC
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEc
Confidence            444 889999999999999997     246899999999999999999994                 999999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH--HHHHHHhhccC---CceeccCCCCCCC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSG---AKFSLIPPVPNVS  150 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~  150 (409)
                      +|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+........   ...+.+... ...
T Consensus       119 ~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  197 (580)
T 3etc_A          119 KSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLE  197 (580)
T ss_dssp             TTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCT
T ss_pred             CCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-ccc
Confidence            999999999999999999999999999999999999999999999987643  45544433332   122222111 011


Q ss_pred             CCccccccchh--------hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchh
Q 015313          151 SETTVFDQSQA--------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH  222 (409)
Q Consensus       151 ~~~~~~~~~~~--------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~  222 (409)
                      ......+....        .......++|+++|+|||||||.||+|.++|.+++..+.......++.++++++...|++|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW  277 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence            11111000000        0012356789999999999999999999999999888877767778889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEEc--cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhh
Q 015313          223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (409)
Q Consensus       223 ~~g~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  300 (409)
                      ..+++..++.++..|+++++.  ..+++..+++.          ++++++|+++++|++++.+.+.         .....
T Consensus       278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~  338 (580)
T 3etc_A          278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHY  338 (580)
T ss_dssp             THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---
T ss_pred             HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccC
Confidence            988877788899999999988  56889999988          7789999999999999999874         12345


Q ss_pred             hhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-
Q 015313          301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-  379 (409)
Q Consensus       301 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-  379 (409)
                      ++++||.+++||+++++++.++|.+.+|+++++.||+||+++.++..+....+.+++|+|+|+++++|+|++|++++.| 
T Consensus       339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~  418 (580)
T 3etc_A          339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE  418 (580)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred             CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCC
Confidence            6889999999999999999999999999999999999999877766665567788999999999999999999999988 


Q ss_pred             cceEEEeC-----cchhhhhcCCCcccchh-hcccC
Q 015313          380 VGEICVKS-----PSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       380 ~Gel~v~g-----~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      .|||+++|     ++++.|||++|++|++. .||||
T Consensus       419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy  454 (580)
T 3etc_A          419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYY  454 (580)
T ss_dssp             CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEE
T ss_pred             ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEE
Confidence            89999997     78999999999999999 78997

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1e-57  Score=449.77  Aligned_cols=371  Identities=18%  Similarity=0.277  Sum_probs=304.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe----CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +++.+.|.++++++||++|+++    .++++||+||.++++++|+.|++.                 |+++||+|+++++
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~   80 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF   80 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            4688999999999999999994    567999999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-c-eeccCCCCCCCCCcc
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPVPNVSSETT  154 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  154 (409)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+......... . .+.+..... .....
T Consensus        81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  159 (541)
T 1v25_A           81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA  159 (541)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred             CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence            99999999999999999999999999999999999999999999999887777665544321 1 112111110 00000


Q ss_pred             ccccch-hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHH--HhhcccCCCCeEEEecCchhHHHHHHHHH
Q 015313          155 VFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (409)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~g~~~~~~  231 (409)
                      ..+... ........++++++|+|||||||.||+|.++|+++.......  ...++++++|++++.+|++|..++. .++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~  238 (541)
T 1v25_A          160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY  238 (541)
T ss_dssp             HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred             HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence            000000 001123456899999999999999999999999998776653  3456788999999999999999985 477


Q ss_pred             HHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313          232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (409)
Q Consensus       232 ~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~  310 (409)
                      .+++.|+++++.+. +++..+++.          ++++++|+++++|+++..+++...        ....++++||.+++
T Consensus       239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~  300 (541)
T 1v25_A          239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLVV  300 (541)
T ss_dssp             HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEEE
T ss_pred             HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEEE
Confidence            88999999999874 689999888          778999999999999999987632        22346789999999


Q ss_pred             eCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCccccccccCCeEEEEeeCCCCCCCC-
Q 015313          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDESGSDAA-  378 (409)
Q Consensus       311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----------~~~~~~~G~p~~~~~~~ivd~~~~~~~~-  378 (409)
                      ||+++++++.+++ +.+++++++.||+||++.+++.....           ....+++|+|+|+++++|+|+++++++. 
T Consensus       301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~  379 (541)
T 1v25_A          301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD  379 (541)
T ss_dssp             CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred             CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence            9999999999999 66799999999999998765533211           0235689999999999999999998873 


Q ss_pred             -c-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          379 -G-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       379 -~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                       + .|||+++||+++.||||+|++|++.+  ||||
T Consensus       380 ~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~  414 (541)
T 1v25_A          380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF  414 (541)
T ss_dssp             SCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCE
T ss_pred             CCcceEEEEeCcchhccccCChhhhhhhccCCCCe
Confidence             3 79999999999999999999999985  8997

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=9e-58  Score=450.62  Aligned_cols=371  Identities=22%  Similarity=0.290  Sum_probs=307.6

Q ss_pred             hHHH-HHHHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         2 ~~~~-~l~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      ++.+ .|.++++++ |++|+++  .++++||+||.++++++|+.|++                 +|+++||+|+|+++|+
T Consensus        26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~   87 (548)
T 2d1s_A           26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC   87 (548)
T ss_dssp             HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred             cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence            6777 788888889 9999998  57899999999999999999999                 4999999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--CceeccCCCCC---CCCCc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET  153 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~  153 (409)
                      ++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+........  ...+.+.....   .....
T Consensus        88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (548)
T 2d1s_A           88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD  167 (548)
T ss_dssp             TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred             hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence            99999999999999999999999999999999999999999999987776665543332  12222221100   00000


Q ss_pred             cccccc-hh-hhccCC------CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecCchh
Q 015313          154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH  222 (409)
Q Consensus       154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~  222 (409)
                      ...... .. ......      .++++++|+|||||||.||+|.++|+++...+......   ++++++|++++.+|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  247 (548)
T 2d1s_A          168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH  247 (548)
T ss_dssp             HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence            000000 00 001111      23899999999999999999999999999988887766   67888999999999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhh
Q 015313          223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (409)
Q Consensus       223 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~  302 (409)
                      ..++...++.++ .|+++++.+.+++..+++.          ++++++|+++++|+++..+.+...        ....++
T Consensus       248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l  308 (548)
T 2d1s_A          248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL  308 (548)
T ss_dssp             HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred             HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence            999876567777 9999999999999999998          778999999999999999987522        123467


Q ss_pred             ccceEEEeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-
Q 015313          303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-  379 (409)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-  379 (409)
                      ++||.+++||+++++++.+++.+.+ ++++++.||+||+++.++.........+++|+|+|+++++|+| +++++++.| 
T Consensus       309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~  388 (548)
T 2d1s_A          309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR  388 (548)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred             cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence            8999999999999999999999999 6889999999999876655444446678999999999999999 678888888 


Q ss_pred             cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          380 VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       380 ~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      .|||+++||+++.||||+|++|++.+  ||||
T Consensus       389 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~  420 (548)
T 2d1s_A          389 RGEVCVKGPMLMKGYVNNPEATKELIDEEGWL  420 (548)
T ss_dssp             CEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred             CeEEEECCHHHhhhhcCChHHhhhcccCCcEE
Confidence            89999999999999999999999985  7997

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.5e-57  Score=443.18  Aligned_cols=365  Identities=20%  Similarity=0.294  Sum_probs=303.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +|+.+.|.++++++||++|++++++++||+||.++++++|+.|.+.                 |+++||+|+++++|+++
T Consensus         6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   68 (509)
T 3ivr_A            6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE   68 (509)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence            5789999999999999999999999999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-ce-eccCCCCCCCCCccccc-
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KF-SLIPPVPNVSSETTVFD-  157 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-  157 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+......... .. ..+..  .......... 
T Consensus        69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  146 (509)
T 3ivr_A           69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD--GSGPFAPFKDL  146 (509)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC--CCSSCEEGGGT
T ss_pred             HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC--CCcChhhHhhc
Confidence            9999999999999999999999999999999999999999999887765444333321 11 11111  1111111111 


Q ss_pred             -cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhc
Q 015313          158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA  236 (409)
Q Consensus       158 -~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~  236 (409)
                       ...........++++++|+|||||||.||+|.++|+++...+.+....++++++|++++.+|++|..++.. .+.+++.
T Consensus       147 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~  225 (509)
T 3ivr_A          147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQA  225 (509)
T ss_dssp             CCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHH
T ss_pred             cCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHh
Confidence             11111223456789999999999999999999999999999999999999999999999999999999865 5555556


Q ss_pred             CCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCC
Q 015313          237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP  316 (409)
Q Consensus       237 G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~  316 (409)
                      |++.++...+++..+++.          ++++++|+++++|+++..+++..          ...+++++|.++.+|++  
T Consensus       226 ~g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~--  283 (509)
T 3ivr_A          226 GGASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP--  283 (509)
T ss_dssp             TCEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH--
T ss_pred             CCcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh--
Confidence            666666668899999998          77899999999999999998752          34567899999999987  


Q ss_pred             HHHHHHHHHHh-CCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313          317 LPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (409)
Q Consensus       317 ~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY  394 (409)
                       ++.+++.+.+ ++++++.||+||++++++..... ....++|+|+++++++|+|+++++++.| .|||+++||+++.||
T Consensus       284 -~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY  361 (509)
T 3ivr_A          284 -ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGY  361 (509)
T ss_dssp             -HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEE
T ss_pred             -HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccc
Confidence             8888999988 89999999999998765533221 2334599999999999999999999988 899999999999999


Q ss_pred             cCCCcccchh-hcccC
Q 015313          395 WKLPKESRTL-SSCLY  409 (409)
Q Consensus       395 ~~~~~~t~~~-~~g~~  409 (409)
                      |++|+.|++. .||||
T Consensus       362 ~~~~~~t~~~f~~g~~  377 (509)
T 3ivr_A          362 WNNAAATQHAFRNGWH  377 (509)
T ss_dssp             TTCHHHHHHHTGGGSE
T ss_pred             cCCHHHhHHHhhcCCc
Confidence            9999999998 68997

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.2e-58  Score=452.07  Aligned_cols=364  Identities=18%  Similarity=0.252  Sum_probs=301.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|+++++++||++|+++.++++||+||.++++++|++|.+.                 |+++||+|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~e   63 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSE-----------------YPDDRSPIMVYGHMQPE   63 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH-----------------STTCCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEeCCCHH
Confidence            8999999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+++|++++|+++.++.+++.++++.+++++++++.....      ............   ............
T Consensus        64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~  134 (512)
T 3fce_A           64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSEDN---LKDIFFTHKGNT  134 (512)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETHH---HHHHHHHTTTCC
T ss_pred             HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechhh---hhhhcccccccC
Confidence            99999999999999999999999999999999999999999753210      000000000000   000000000000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++|+|||||||.||+|.++|+++.+.+.+....+++.++|++++.+|++|..+++ .++.++..|+++
T Consensus       135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  213 (512)
T 3fce_A          135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL  213 (512)
T ss_dssp             CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred             CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence            1112335678999999999999999999999999999999998899999999999999999999985 588999999999


Q ss_pred             EEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      ++.+.   +++..+++.          ++++++|++.++|+++..++....        ....+++++|.+++||+++++
T Consensus       214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~  275 (512)
T 3fce_A          214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN  275 (512)
T ss_dssp             EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred             EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence            99986   678888888          777999999999999998876532        234568899999999999999


Q ss_pred             HHHHHHHHHh-CCccccccccccccccccccCCC-----CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       318 ~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~-----~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      ++.+++.+.+ ++++++.||+||+++.++.....     .....++|+|.++++++|+|++|++++.| .|||+++||++
T Consensus       276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v  355 (512)
T 3fce_A          276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSV  355 (512)
T ss_dssp             HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTS
T ss_pred             HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecccc
Confidence            9999999999 88999999999998765532211     23566899999999999999999999888 89999999999


Q ss_pred             hhhhcCCCcccchhh-----cccC
Q 015313          391 FKEYWKLPKESRTLS-----SCLY  409 (409)
Q Consensus       391 ~~gY~~~~~~t~~~~-----~g~~  409 (409)
                      +.|||++|++|++.+     +|||
T Consensus       356 ~~GY~~~~~~t~~~f~~~~~~~~~  379 (512)
T 3fce_A          356 SVGYLGSPELTEKAFTMIDGERAY  379 (512)
T ss_dssp             CSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             ChhhcCCchhhhhccccCCCCEEE
Confidence            999999999999986     6687

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=5.4e-57  Score=441.17  Aligned_cols=367  Identities=21%  Similarity=0.270  Sum_probs=301.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      ||+.+.|.++++++||++|+++.  ++++||+||.++++++|+.|++.                 |+++||+|+|+++|+
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~   64 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS   64 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence            57899999999999999999987  88999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe--chhHHHHH-HHHhhccCCceeccCCCCCCCCCccc
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV  155 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (409)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|+  +.+..+.+ ... .  ....+.+.....   ....
T Consensus        65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~---~~~~  138 (504)
T 1t5h_X           65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG-S--GARIIFLGDLVR---DGEP  138 (504)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC-C--CCEEEEGGGTEE---TTEE
T ss_pred             HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc-c--cceeEEecchhh---cCcc
Confidence            9999999999999999999999999999999999999999999  77655544 221 1  111111110000   0000


Q ss_pred             cccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhccc--CCCCeEEEecCchhHHHHHHHHHHH
Q 015313          156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                      .............++++++|+|||||||.||+|.++|+++.+.+......+++  .++|++++.+|++|..++...++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~  218 (504)
T 1t5h_X          139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA  218 (504)
T ss_dssp             CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred             cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence            00000001123467899999999999999999999999999998888877777  7889999999999999986668899


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|+++++.+.+++..+++.          ++++++|+++++|+++..+++....      .....++++||.+++||+
T Consensus       219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~l~~lr~~~~gG~  282 (504)
T 1t5h_X          219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGA  282 (504)
T ss_dssp             HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCC------TTCCCCCTTCCEEEECCT
T ss_pred             HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhcc------ccccccCccccEEEEcCC
Confidence            999999999999999999988          7789999999999999999875311      012346789999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCC---CCCCCc-cceEEEe-Cc
Q 015313          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES---GSDAAG-VGEICVK-SP  388 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~---~~~~~~-~Gel~v~-g~  388 (409)
                      ++++++.+++.+.+++++++.||+||++......   ....+++|.|.++++++|+|+++   ++++.| .|||+++ ||
T Consensus       283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~  359 (504)
T 1t5h_X          283 TMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD  359 (504)
T ss_dssp             TCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCT
T ss_pred             cCCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCc
Confidence            9999999999999999999999999994333222   24567899999999999999888   788888 8999999 99


Q ss_pred             chhhhhcCCCcccchh-hcccC
Q 015313          389 SLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      +++.||||+|+.|++. .||||
T Consensus       360 ~~~~GY~~~~~~t~~~f~~g~~  381 (504)
T 1t5h_X          360 SAFVGYLNQPQATAEKLQDGWY  381 (504)
T ss_dssp             TSCCCBTTCHHHHHHHEETTEE
T ss_pred             eeeceecCCchhhhhhhcCCcc
Confidence            9999999999999998 68997

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.4e-57  Score=444.53  Aligned_cols=371  Identities=23%  Similarity=0.340  Sum_probs=299.1

Q ss_pred             HHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHH
Q 015313            3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~   82 (409)
                      +.+.|.++++ +||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+++++|+++++
T Consensus        26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~~   87 (529)
T 2v7b_A           26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTL-----------------GVHPEERILLVMLDTVALP   87 (529)
T ss_dssp             HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSTHHH
T ss_pred             HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCcHHHH
Confidence            6778888888 999999999889999999999999999999994                 9999999999999999999


Q ss_pred             HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC---CceeccCCCCCCC----CCccc
Q 015313           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPNVS----SETTV  155 (409)
Q Consensus        83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~  155 (409)
                      ++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........   .............    .....
T Consensus        88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (529)
T 2v7b_A           88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL  167 (529)
T ss_dssp             HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred             HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence            9999999999999999999999999999999999999999987766655433211   1111111110000    00000


Q ss_pred             cc-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHH-HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313          156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (409)
Q Consensus       156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~  233 (409)
                      .. ...........++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|..++...++.+
T Consensus       168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  247 (529)
T 2v7b_A          168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP  247 (529)
T ss_dssp             HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred             hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence            00 00011122346789999999999999999999999999 56555555567788999999999999999987767889


Q ss_pred             HhcCCEEEEc-cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       234 l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      +..|+++++. +.+++..+++.          ++++++|+++++|+++..+++....        ......++|.+++||
T Consensus       248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG  309 (529)
T 2v7b_A          248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNL--------PARADVAIRICTSAG  309 (529)
T ss_dssp             HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTC--------CCGGGCCCCEEEECS
T ss_pred             HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccc--------ccccCCceEEEEEcC
Confidence            9999999988 56789998888          7779999999999999999875221        111124899999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchh
Q 015313          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~  391 (409)
                      +++++++.+++.+.+++++++.||+||++.+...........+++|+|+++++++|+|++|++++.| .|||+++||+++
T Consensus       310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~  389 (529)
T 2v7b_A          310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAA  389 (529)
T ss_dssp             SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCC
T ss_pred             CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcc
Confidence            9999999999999999999999999999765544333345678999999999999999999999988 899999999999


Q ss_pred             hhhcCCCcccchh-hcccC
Q 015313          392 KEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       392 ~gY~~~~~~t~~~-~~g~~  409 (409)
                      .|||++|+.|++. .+|||
T Consensus       390 ~gY~~~~~~t~~~f~~~~~  408 (529)
T 2v7b_A          390 VMYWNNREKSRATFLGEWI  408 (529)
T ss_dssp             CCBTTCHHHHHHHEETTEE
T ss_pred             cccCCChHHHHHhhhcCCc
Confidence            9999999999988 58887

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4e-57  Score=442.82  Aligned_cols=357  Identities=18%  Similarity=0.281  Sum_probs=302.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|+++++++||++|+++.++++||+||.++++++|+.|.++                .+.++|++|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~   64 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH   64 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence            8999999999999999999999999999999999999999999885                478899999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC--ceeccCCCCCCCCCcccccc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ  158 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (409)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++.....      .....  ..........      . ..
T Consensus        65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~~~------~-~~  131 (511)
T 3e7w_A           65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTVSAEELLE------N-EG  131 (511)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEEEHHHHHT------S-CS
T ss_pred             HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhcccccceecHhhhhc------c-cc
Confidence            99999999999999999999999999999999999999999754210      00000  0000000000      0 00


Q ss_pred             chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                      ..........++++++|+|||||||.||+|.++|+++.+.+.+....++++++|++++.+|++|..+++ .++.++..|+
T Consensus       132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~  210 (511)
T 3e7w_A          132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG  210 (511)
T ss_dssp             CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred             CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence            001112234678999999999999999999999999999999998889999999999999999999975 5889999999


Q ss_pred             EEEEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCC
Q 015313          239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (409)
Q Consensus       239 ~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~  315 (409)
                      ++++.+.   +++..+++.          ++++++|+++++|+++..+++...        .....++++|.+++||+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l  272 (511)
T 3e7w_A          211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL  272 (511)
T ss_dssp             EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence            9999886   578888888          778999999999999999987532        2335678999999999999


Q ss_pred             CHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       316 ~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      ++++.+++.+.+ ++++++.||+||+++.++....     ......++|+|+|+++++|+|++|++++.| .|||+|+||
T Consensus       273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~  352 (511)
T 3e7w_A          273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP  352 (511)
T ss_dssp             CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST
T ss_pred             CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC
Confidence            999999999999 8999999999999876553211     123456799999999999999999999888 899999999


Q ss_pred             chhhhhcCCCcccchhh
Q 015313          389 SLFKEYWKLPKESRTLS  405 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~  405 (409)
                      +++.||||+|++|++.+
T Consensus       353 ~v~~GY~~~~~~t~~~f  369 (511)
T 3e7w_A          353 SVSRGYLGEPELTEKAF  369 (511)
T ss_dssp             TSCCCBTTCHHHHHHHE
T ss_pred             ccChhhCCCcccchhhh
Confidence            99999999999999986

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.5e-56  Score=441.89  Aligned_cols=369  Identities=18%  Similarity=0.217  Sum_probs=304.8

Q ss_pred             HHHHHHHhccc-----CCCeeEEEeC-----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313            3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (409)
Q Consensus         3 ~~~~l~~~~~~-----~~~~~a~~~~-----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (409)
                      +.+.|.++++.     +||++|+++.     .+++||+||.++++++|+.|.+.                +|+++||+|+
T Consensus        40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~  103 (570)
T 3c5e_A           40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA  103 (570)
T ss_dssp             HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred             HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence            35778888888     9999999972     37899999999999999999983                3899999999


Q ss_pred             EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCC
Q 015313           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS  150 (409)
Q Consensus        73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  150 (409)
                      |+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+..+.......  .+.+.... ..
T Consensus       104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  182 (570)
T 3c5e_A          104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CD  182 (570)
T ss_dssp             EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-CT
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccC-cc
Confidence            9999999999999999999999999999999999999999999999999998877776654443321  11221100 00


Q ss_pred             CCcccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH--HHHHHHhhcccCCCCeEEEecCchhHH
Q 015313          151 SETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH  224 (409)
Q Consensus       151 ~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~  224 (409)
                      ......+.    ..........++++++|+|||||||.||+|.++|+ ++.  ..... ..++++++|++++..|++|..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~  260 (570)
T 3c5e_A          183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL  260 (570)
T ss_dssp             TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred             ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence            00000000    00011123457899999999999999999999999 554  44444 667888999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhh
Q 015313          225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (409)
Q Consensus       225 g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~  302 (409)
                      +++..++.++..|+++++.+  .+++..+++.          ++++++|+++++|++++.+.+..         ....++
T Consensus       261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~  321 (570)
T 3c5e_A          261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF  321 (570)
T ss_dssp             HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred             HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence            98767889999999999987  6889999888          77899999999999999998741         123467


Q ss_pred             ccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cc
Q 015313          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG  381 (409)
Q Consensus       303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~G  381 (409)
                      ++||.+++||+++++++.++|.+.+++++++.||+||+++.++.........+++|+|+++++++|+|+++++++.| .|
T Consensus       322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~G  401 (570)
T 3c5e_A          322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEG  401 (570)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCE
T ss_pred             ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999876655444445678999999999999999999999988 89


Q ss_pred             eEEEe-----CcchhhhhcCCCcccchh-hcccC
Q 015313          382 EICVK-----SPSLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       382 el~v~-----g~~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                      ||+++     ||+++.||||+|+.|++. .+|||
T Consensus       402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~  435 (570)
T 3c5e_A          402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFW  435 (570)
T ss_dssp             EEEEECSSBCCTTCCCEETTCHHHHHHTEETTEE
T ss_pred             eeEEeccCCCCchhhccccCChhHhhhhhcCCcc
Confidence            99999     999999999999999998 47887

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=9.6e-57  Score=444.24  Aligned_cols=351  Identities=20%  Similarity=0.364  Sum_probs=291.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|+++.++++||+||.++++++|+.|.+.                 |+++||+|+|+++|++++
T Consensus        40 ~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e~  102 (563)
T 1amu_A           40 TIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSIDL  102 (563)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred             cHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            688999999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++.++++++|++++....+..+..  ......+.. .....      ....
T Consensus       103 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~~  173 (563)
T 1amu_A          103 FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIKI------REGT  173 (563)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTTT------SCCS
T ss_pred             HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhcc------ccCc
Confidence            99999999999999999999999999999999999999999877654433211  111111111 00000      0000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++|+|||||||.||||.++|+++.+.+......++++++|++++.+|++|..+++ .++.+++.|++++
T Consensus       174 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  252 (563)
T 1amu_A          174 NLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY  252 (563)
T ss_dssp             CCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             cCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence            111234578999999999999999999999999999888888888999999999999999999885 5888999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   +++..+++.          ++++++|++.++|+++..+...              .++++|.+++||++++++
T Consensus       253 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~~  308 (563)
T 1amu_A          253 IILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSPS  308 (563)
T ss_dssp             ECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCHH
T ss_pred             EcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCHH
Confidence            9886   577777777          7779999999999998776432              367899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccccC---CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313          319 VMQQWETITGHRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (409)
Q Consensus       319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY  394 (409)
                      +.++|.+.  +++++.||+||+++.++...   .......++|+|+++++++|+|+++++++.| .|||+++||+++.||
T Consensus       309 ~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY  386 (563)
T 1amu_A          309 LVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGY  386 (563)
T ss_dssp             HHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred             HHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhh
Confidence            99998774  78999999999986554321   1223567899999999999999999999888 899999999999999


Q ss_pred             cCCCcccchhh
Q 015313          395 WKLPKESRTLS  405 (409)
Q Consensus       395 ~~~~~~t~~~~  405 (409)
                      ||+|++|++.+
T Consensus       387 ~~~pe~t~~~f  397 (563)
T 1amu_A          387 WKRPELTSQKF  397 (563)
T ss_dssp             TTCHHHHHHHE
T ss_pred             CCCchhhhhhc
Confidence            99999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.2e-56  Score=446.74  Aligned_cols=374  Identities=19%  Similarity=0.236  Sum_probs=303.0

Q ss_pred             HHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +.+.|.++++++||++|+++      ..+++||+||+++++++|+.|++                 +|+++||+|+|+++
T Consensus        78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~  140 (652)
T 1pg4_A           78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP  140 (652)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred             HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence            45677788889999999997      34689999999999999999999                 49999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC---C-ceecc
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG---A-KFSLI  143 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~---~-~~~~~  143 (409)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+........   . ..+.+
T Consensus       141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  220 (652)
T 1pg4_A          141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL  220 (652)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred             CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999998653         233333333221   1 12222


Q ss_pred             CCCCC-CC--CC--cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCe
Q 015313          144 PPVPN-VS--SE--TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ  213 (409)
Q Consensus       144 ~~~~~-~~--~~--~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~  213 (409)
                      ..... ..  ..  ....+.    ..........++++++|+|||||||.||||+++|++++..+. .....++++++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  300 (652)
T 1pg4_A          221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI  300 (652)
T ss_dssp             CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence            11110 00  00  000000    000111223568999999999999999999999999887664 4455678899999


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  289 (409)
                      +++..|++|..++...++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|++++.+++....
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence            99999999999986668899999999999885    578888888          7889999999999999999875321


Q ss_pred             hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC--CCCCCccccccccCCe
Q 015313          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGV  364 (409)
Q Consensus       290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~--~~~~~~~~~G~p~~~~  364 (409)
                            .....++++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++...  ....+.+++|+|++++
T Consensus       371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~  444 (652)
T 1pg4_A          371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV  444 (652)
T ss_dssp             ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred             ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence                  123356899999999999999999999999988   89999999999987655432  2245678999999999


Q ss_pred             EEEEeeCCCCCCCCc-cceEEEeC--cchhhhhcCCCcccchhh----cccC
Q 015313          365 QVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESRTLS----SCLY  409 (409)
Q Consensus       365 ~~~ivd~~~~~~~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~~----~g~~  409 (409)
                      +++|+|++|++++.| .|||+++|  |+++.||||+|+.+.+.+    +|||
T Consensus       445 ~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y  496 (652)
T 1pg4_A          445 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  496 (652)
T ss_dssp             CEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             eEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence            999999999999888 79999999  799999999999998873    7887

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.1e-56  Score=438.62  Aligned_cols=355  Identities=35%  Similarity=0.560  Sum_probs=295.1

Q ss_pred             ChHHHHHHHhcccCCC-eeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~-~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      +|+.+.|.++++++|+ ++|+++.++++||+||.++++++|..|..                      |++|+++++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~   79 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM   79 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred             chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence            3567788889999997 99999999999999999999999987743                      789999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-CceeccCCCCCCCCCcccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ  158 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (409)
                      +++++++||+++|++++|+++.++.+++.+++++++++++|++.+..     ...... ........ .          .
T Consensus        80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~-~----------~  143 (505)
T 3nyq_A           80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDV-R----------A  143 (505)
T ss_dssp             HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCT-T----------C
T ss_pred             HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhcccccccccc-c----------c
Confidence            99999999999999999999999999999999999999999987521     000000 11111100 0          0


Q ss_pred             chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                      ..........++++++|+|||||||.||+|.++|+++...+......++++++|++++.+|++|..+++..++.++..|+
T Consensus       144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~  223 (505)
T 3nyq_A          144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG  223 (505)
T ss_dssp             CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred             ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence            00111233467899999999999999999999999999999999998999999999999999999998777899999999


Q ss_pred             EEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      ++++.+.+++..+++.          + ++++|+++++|+++..+++.+...+.     ....++++|.+++||++++++
T Consensus       224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~l~~lr~i~~gg~~l~~~  287 (505)
T 3nyq_A          224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADPE-----LAKALAGARLLVSGSAALPVH  287 (505)
T ss_dssp             EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCHH-----HHHHHHHCSEEEECSSCCCHH
T ss_pred             EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCch-----hhcccccceEEEECCCCCCHH
Confidence            9999999999998888          5 67999999999999999886443221     334678899999999999999


Q ss_pred             HHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCC---c-cceEEEeCcchhhhh
Q 015313          319 VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA---G-VGEICVKSPSLFKEY  394 (409)
Q Consensus       319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~---~-~Gel~v~g~~~~~gY  394 (409)
                      +.+++.+.+++++++.||+||+++.+..........+++|+|+++++++|+|++|++++.   | +|||+++||+++.||
T Consensus       288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY  367 (505)
T 3nyq_A          288 DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY  367 (505)
T ss_dssp             HHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEE
T ss_pred             HHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhh
Confidence            999999999999999999999997776655556677899999999999999999988764   5 899999999999999


Q ss_pred             cCCCcccchhh--cccC
Q 015313          395 WKLPKESRTLS--SCLY  409 (409)
Q Consensus       395 ~~~~~~t~~~~--~g~~  409 (409)
                      ||+|++|++.|  ||||
T Consensus       368 ~~~~~~t~~~f~~~g~y  384 (505)
T 3nyq_A          368 LNRPDATAAAFTEDGFF  384 (505)
T ss_dssp             TTCHHHHHHTBCTTSCE
T ss_pred             CCChhHhhhhhcCCCCC
Confidence            99999999995  8997

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=4.1e-56  Score=441.02  Aligned_cols=351  Identities=21%  Similarity=0.284  Sum_probs=293.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+|+++|++++
T Consensus        76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~  138 (570)
T 4gr5_A           76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGL-----------------GVAPGTLVGVHLERGFDM  138 (570)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            678999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++.++++++|++.+....+.      ............       ......
T Consensus       139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~  205 (570)
T 4gr5_A          139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEAA-------SDAPAG  205 (570)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred             HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeecccc-------cccccc
Confidence            9999999999999999999999999999999999999999976432110      011111110000       000011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++|+|||||||.||+|.++|+++.+.+.. ....+++++|++++.+|++|..+.+ .++.++..|++++
T Consensus       206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  283 (570)
T 4gr5_A          206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV  283 (570)
T ss_dssp             CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence            1122356789999999999999999999999999776544 3455788899999999999876654 5888999999999


Q ss_pred             Ecc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +.+  .+++..+++.          ++++++|++.++|+++..+++..           ...+++||.+++||+++++++
T Consensus       284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~  342 (570)
T 4gr5_A          284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH  342 (570)
T ss_dssp             ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred             EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence            987  4678888888          78899999999999999998752           235789999999999999999


Q ss_pred             HHHHHHHh-CCccccccccccccccccccC----CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhh
Q 015313          320 MQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (409)
Q Consensus       320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~----~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~g  393 (409)
                      .+++.+.+ ++++++.||+||++++++...    .......++|+|+++++++|+|+++++++.| +|||+|+||++++|
T Consensus       343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~G  422 (570)
T 4gr5_A          343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHG  422 (570)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred             HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchh
Confidence            99999987 789999999999987654321    1223456799999999999999999999888 89999999999999


Q ss_pred             hcCCCcccchhh
Q 015313          394 YWKLPKESRTLS  405 (409)
Q Consensus       394 Y~~~~~~t~~~~  405 (409)
                      |||+|++|++.|
T Consensus       423 Y~~~~~~t~~~f  434 (570)
T 4gr5_A          423 YVSRPALTAERF  434 (570)
T ss_dssp             ETTCHHHHHHHE
T ss_pred             cCCCchhhhccc
Confidence            999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=6.1e-56  Score=443.57  Aligned_cols=374  Identities=18%  Similarity=0.245  Sum_probs=306.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +++.+.|.++++  ||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~   87 (617)
T 3rg2_A           27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE   87 (617)
T ss_dssp             CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence            467889999988  99999999999999999999999999999995                 89999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-CceeccCCCCCCCCCcc
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT  154 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (409)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++.+..     ........... .................
T Consensus        88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (617)
T 3rg2_A           88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD  167 (617)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred             HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence            9999999999999999999999999999999999999999987543     22222222111 11111111111000000


Q ss_pred             cc-ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 015313          155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA  232 (409)
Q Consensus       155 ~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~  232 (409)
                      .. ............++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~  247 (617)
T 3rg2_A          168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG  247 (617)
T ss_dssp             HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred             hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence            00 000111122345789999999999999999999999999999999999899999999999999999988754 5888


Q ss_pred             HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (409)
Q Consensus       233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG  312 (409)
                      +++.|+++++.+..++..+++.          ++++++|++.++|+++..+++......      ...++++||.+++||
T Consensus       248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~l~~lr~i~~gG  311 (617)
T 3rg2_A          248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEGE------SRAQLASLKLLQVGG  311 (617)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTTC------CTTTTTTCCEEEEES
T ss_pred             HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhccc------ccccCCCccEEEEcC
Confidence            9999999999999899888888          778999999999999999987633211      223688999999999


Q ss_pred             CCCCHHHHHHHHHHhCCccccccccccccccccccCCC-CCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeCcc
Q 015313          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPS  389 (409)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g~~  389 (409)
                      +++++++.+++.+.+++++++.||+||+++.+...... .....++|.|+ ++.+++|+|+++++++.| +|||+++||+
T Consensus       312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~  391 (617)
T 3rg2_A          312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPY  391 (617)
T ss_dssp             SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSS
T ss_pred             CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCcc
Confidence            99999999999999999999999999998655433221 22345789997 788999999999999998 8999999999


Q ss_pred             hhhhhcCCCcccchhh--cccC
Q 015313          390 LFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       390 ~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      +++||||+|+.|++.|  ||||
T Consensus       392 v~~GY~~~p~~t~~~f~~~~~y  413 (617)
T 3rg2_A          392 TFRGYYKSPQHNASAFDANGFY  413 (617)
T ss_dssp             SCSCCTTCHHHHHHHBCTTSCE
T ss_pred             ccchhcCChhhhhhccCCCCce
Confidence            9999999999999995  7887

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=6.1e-56  Score=465.36  Aligned_cols=374  Identities=20%  Similarity=0.285  Sum_probs=313.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~   78 (409)
                      +++.+.|.++++++||++|+++.  ++++||+||.++++++|+.|++.                 |+++||+|+|+++|+
T Consensus        61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ns  123 (979)
T 3tsy_A           61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKL-----------------GVNQNDVVMLLLPNC  123 (979)
T ss_dssp             SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEeCCC
Confidence            57899999999999999999986  68999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCC------C
Q 015313           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS------E  152 (409)
Q Consensus        79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  152 (409)
                      ++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+...........+.+........      .
T Consensus       124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (979)
T 3tsy_A          124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF  203 (979)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred             HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence            9999999999999999999999999999999999999999999988766655554443333333322111000      0


Q ss_pred             cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHH
Q 015313          153 TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH  224 (409)
Q Consensus       153 ~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~  224 (409)
                      ......    ..........++++++|+|||||||.||+|.++|+++...+.....    .+.+.++|++++.+|++|..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~  283 (979)
T 3tsy_A          204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY  283 (979)
T ss_dssp             GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred             HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence            000000    0111223456899999999999999999999999999988776643    34677899999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 015313          225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (409)
Q Consensus       225 g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  304 (409)
                      ++...++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ....++++
T Consensus       284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~  345 (979)
T 3tsy_A          284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS  345 (979)
T ss_dssp             HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred             HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence            997778889999999999999999999988          778999999999999999987632        23456889


Q ss_pred             ceEEEeeCCCCCHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCccccccccCCeEEEEeeC-CCCCCC
Q 015313          305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAED-ESGSDA  377 (409)
Q Consensus       305 lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~-----~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~  377 (409)
                      ||.+++||+++++++.+++.+.+ ++++++.||+||++.+++..     .......+++|+|+++++++|+|+ ++++++
T Consensus       346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~  425 (979)
T 3tsy_A          346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS  425 (979)
T ss_dssp             CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC
Confidence            99999999999999999999999 89999999999998654422     223456788999999999999995 478888


Q ss_pred             Cc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313          378 AG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY  409 (409)
Q Consensus       378 ~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~  409 (409)
                      .| .|||+|+||++++||||+|+.|++.+  ||||
T Consensus       426 ~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~  460 (979)
T 3tsy_A          426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWL  460 (979)
T ss_dssp             TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred             CCCccEEEEECCCccccccCChhhhhhhccCCCcE
Confidence            88 89999999999999999999999985  8897

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3.4e-56  Score=444.05  Aligned_cols=349  Identities=18%  Similarity=0.200  Sum_probs=292.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|+++.++++||+||.++++++|+.|++.                 |+++||+|+|+++|++++
T Consensus        28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~   90 (620)
T 4dg8_A           28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEH-----------------YPQPGVCLGVYGEYSRES   90 (620)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH-----------------CCSSCCEEEEESSSCHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            688999999999999999999999999999999999999999994                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|+++.++.+++.++++++++++++++.......      ...........         ......
T Consensus        91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~------~~~~~~~~~~~---------~~~~~~  155 (620)
T 4dg8_A           91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA------NGLPCVPVRHL---------PAAPAS  155 (620)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC------TTSCEEEGGGC---------CCCCCC
T ss_pred             HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc------cCCceeeeccC---------CcCCcc
Confidence            999999999999999999999999999999999999999765321100      00000000000         000011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++|+|||||||.||||.++|+++.+.+.. ...+++.++|+++...|++|..+++ .++.+++.|++++
T Consensus       156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  233 (620)
T 4dg8_A          156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV  233 (620)
T ss_dssp             SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence            1122345789999999999999999999999999876655 4566788999999999999999986 4899999999999


Q ss_pred             Ecc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313          242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (409)
Q Consensus       242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~  319 (409)
                      +.+  .+++..+++.          ++++++|++.++|+++..+.+.           ....+++||.+++||+++++++
T Consensus       234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~  292 (620)
T 4dg8_A          234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH  292 (620)
T ss_dssp             ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred             eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence            965  5788888888          7889999999999999998763           2346789999999999999999


Q ss_pred             HHHHHHHh-CCcccccccccccccccccc----CCCCCCccccccccCCeEEEEeeCCCCC-CCCc-cceEEEeCcchhh
Q 015313          320 MQQWETIT-GHRLLERYGMTEFVMAISNP----LRGARKAGTVGNPLPGVQVKIAEDESGS-DAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~----~~~~~~~~~~G~p~~~~~~~ivd~~~~~-~~~~-~Gel~v~g~~~~~  392 (409)
                      .+++.+.+ +++++|.||+||+++.++..    ........++|+|+++++++|+|+++++ ++.| +|||+++||++++
T Consensus       293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~  372 (620)
T 4dg8_A          293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ  372 (620)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred             HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence            99988876 88999999999998765421    1123456689999999999999999987 6677 8999999999999


Q ss_pred             hhcCCCcccchhh
Q 015313          393 EYWKLPKESRTLS  405 (409)
Q Consensus       393 gY~~~~~~t~~~~  405 (409)
                      ||||+|++|++.|
T Consensus       373 GY~~~p~~t~~~f  385 (620)
T 4dg8_A          373 GYRNDAARTRASF  385 (620)
T ss_dssp             EETTCHHHHHHHE
T ss_pred             ccCCChhhhhhhh
Confidence            9999999999985

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.8e-56  Score=438.19  Aligned_cols=362  Identities=18%  Similarity=0.274  Sum_probs=297.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +|+.+.|.++++++||++|+.+.++++||+||.++++++|++|.+.                 |+++||+|+++++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~~   66 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSL-----------------ALLAKSPVLVFGAQTYD   66 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCCEEEEECSSHH
T ss_pred             HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence            3689999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++++....+.      ......+...   .  ........
T Consensus        67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~---~--~~~~~~~~  135 (521)
T 3l8c_A           67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE------GISLVSLSEI---E--SAKLAEMP  135 (521)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT------TSEEEEHHHH---H--HHHHHTCC
T ss_pred             HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc------cCcccchhhh---h--hcccccCC
Confidence            99999999999999999999999999999999999999999875321100      0000000000   0  00000000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh--cccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (409)
                      ........++++++|+|||||||.||+|.++|+++.+.+.+....  +.....+++++..|++|..++. .++.++..|+
T Consensus       136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~  214 (521)
T 3l8c_A          136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG  214 (521)
T ss_dssp             CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred             cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence            011223467899999999999999999999999999888777665  6778899999999999998875 4888899999


Q ss_pred             EEEEccCc---chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCC
Q 015313          239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (409)
Q Consensus       239 ~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~  315 (409)
                      ++++.+..   ++..+++.          +.++++|++.++|+++..+.....        ....+++++|.+++||+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l  276 (521)
T 3l8c_A          215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL  276 (521)
T ss_dssp             EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence            99999875   67777777          778999999999999998876522        2335678999999999999


Q ss_pred             CHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       316 ~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~  388 (409)
                      ++++.+++.+.+ ++++++.||+||+++.++....     ......++|+|+|+++++|+|++|++++.| .|||+|+||
T Consensus       277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~  356 (521)
T 3l8c_A          277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP  356 (521)
T ss_dssp             CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST
T ss_pred             CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc
Confidence            999999999998 8999999999999876543211     123456899999999999999999999888 899999999


Q ss_pred             chhhhhcCCCcccchhh-----cccC
Q 015313          389 SLFKEYWKLPKESRTLS-----SCLY  409 (409)
Q Consensus       389 ~~~~gY~~~~~~t~~~~-----~g~~  409 (409)
                      +++.||||+|++|++.+     +|||
T Consensus       357 ~v~~GY~~~~~~t~~~f~~~~~~~~~  382 (521)
T 3l8c_A          357 AVSKGYLNNPEKTAEAFFTFKGQPAY  382 (521)
T ss_dssp             TSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             ccChhhcCCchHhhccCcCCCCceee
Confidence            99999999999999985     6787

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.3e-55  Score=443.41  Aligned_cols=374  Identities=18%  Similarity=0.258  Sum_probs=301.6

Q ss_pred             HHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHh-hCCCCcccccccccccccccCCCCCEEEEEe
Q 015313            3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (409)
Q Consensus         3 ~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~-~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~   75 (409)
                      +.+.|.++++++||++|+++      ..+++||+||.+++.++|+.|+ +                 +|+++||+|+|++
T Consensus        84 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~~  146 (663)
T 1ry2_A           84 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVYM  146 (663)
T ss_dssp             HHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEECC
T ss_pred             HHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEc
Confidence            45778889999999999998      3478999999999999999999 7                 4999999999999


Q ss_pred             CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC-C-ceeccC
Q 015313           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG-A-KFSLIP  144 (409)
Q Consensus        76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~-~~~~~~  144 (409)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+...... . ..+.+.
T Consensus       147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  226 (663)
T 1ry2_A          147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR  226 (663)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence            99999999999999999999999999999999999999999999998753         233444333222 1 122222


Q ss_pred             CCCC--CC--CC--cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCe
Q 015313          145 PVPN--VS--SE--TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ  213 (409)
Q Consensus       145 ~~~~--~~--~~--~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~  213 (409)
                      ....  ..  ..  ....+.    ..........++++++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  306 (663)
T 1ry2_A          227 KTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDV  306 (663)
T ss_dssp             SSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCE
T ss_pred             cCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcE
Confidence            1110  00  00  000000    000112234578999999999999999999999999886664 3455678899999


Q ss_pred             EEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (409)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  289 (409)
                      +++..|++|..++...++.+|+.|+++++.+.    +++..+++.          ++++++|+++++|++++.+.+....
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~~  376 (663)
T 1ry2_A          307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS  376 (663)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred             EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCcc
Confidence            99999999999986668899999999999875    578888888          7889999999999999999765221


Q ss_pred             hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC---CCCCCccccccccCC
Q 015313          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPG  363 (409)
Q Consensus       290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~  363 (409)
                            .....++++||.+++||+++++++.+++.+.+|   +++++.||+||+++.+....   ....+.+++|+|+++
T Consensus       377 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g  450 (663)
T 1ry2_A          377 ------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFG  450 (663)
T ss_dssp             ------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTT
T ss_pred             ------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCC
Confidence                  012346899999999999999999999999988   89999999999986554332   234577899999999


Q ss_pred             eEEEEeeC-CCCCCCC-c-cceEEEeC--cchhhhhcCCCcccchhh----cccC
Q 015313          364 VQVKIAED-ESGSDAA-G-VGEICVKS--PSLFKEYWKLPKESRTLS----SCLY  409 (409)
Q Consensus       364 ~~~~ivd~-~~~~~~~-~-~Gel~v~g--~~~~~gY~~~~~~t~~~~----~g~~  409 (409)
                      ++++|+|+ +|++++. | .|||+++|  |+++.|||++|++|.+.+    +|||
T Consensus       451 ~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y  505 (663)
T 1ry2_A          451 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY  505 (663)
T ss_dssp             CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred             CeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEE
Confidence            99999998 8888876 6 79999999  589999999999998873    7897

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1e-55  Score=432.06  Aligned_cols=362  Identities=22%  Similarity=0.288  Sum_probs=294.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      ||+.+.|.++++++||++|+++.++++||+||.++++++|+.|++                 .   +||+|+|+++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e   60 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ   60 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence            789999999999999999999999999999999999999999987                 2   79999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC-CCC----------C
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPN----------V  149 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~  149 (409)
                      ++++++||+++|++++|+++.++.+++.++++.++++++|++.+..................... ...          .
T Consensus        61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (501)
T 3ipl_A           61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD  140 (501)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred             HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence            99999999999999999999999999999999999999999875432211100000000000000 000          0


Q ss_pred             CCCcccc--ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 015313          150 SSETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (409)
Q Consensus       150 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  227 (409)
                      .......  ............++++++|+|||||||.||+|.++|+++...+......++++++|++++.+|++|..++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  220 (501)
T 3ipl_A          141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS  220 (501)
T ss_dssp             ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred             cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence            0000000  00111122345679999999999999999999999999999999998889999999999999999999996


Q ss_pred             HHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceE
Q 015313          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (409)
Q Consensus       228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~  307 (409)
                      . ++.++..|+++++.+.+++..+++.          ++++++|+++++|+++..+++....           ...+||.
T Consensus       221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~  278 (501)
T 3ipl_A          221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK  278 (501)
T ss_dssp             H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred             H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence            5 8889999999999999999999998          7889999999999999999875321           1227999


Q ss_pred             EEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCC--CCCCccccccccCCeEEEEeeCCCCCCCCccceEEE
Q 015313          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICV  385 (409)
Q Consensus       308 v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~--~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v  385 (409)
                      +++||+++++++.+++.+ +++++++.||+||+++.+.....  .....+++|+|+++++++|+|++    +++.|||++
T Consensus       279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v  353 (501)
T 3ipl_A          279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMI  353 (501)
T ss_dssp             EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEE
T ss_pred             EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEE
Confidence            999999999999999987 59999999999999865443221  22466789999999999999976    334799999


Q ss_pred             eCcchhhhhcCCCcccchhhcccC
Q 015313          386 KSPSLFKEYWKLPKESRTLSSCLY  409 (409)
Q Consensus       386 ~g~~~~~gY~~~~~~t~~~~~g~~  409 (409)
                      +||++++|||++|+.|++..+|||
T Consensus       354 ~g~~~~~gY~~~~~~t~~~~~g~~  377 (501)
T 3ipl_A          354 KGANVMNGYLYPTDLTGTFENGYF  377 (501)
T ss_dssp             ESTTSCSCCSBSTTCCCSEETTEE
T ss_pred             eccchhhhhCcChhhcchhcCCce
Confidence            999999999999999998889997

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.6e-55  Score=439.32  Aligned_cols=366  Identities=21%  Similarity=0.327  Sum_probs=300.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +|+.+.|.++++++||++|+++.    ++++||+||.++++++|+.|.+.                 |+++||+|+++++
T Consensus        11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~   73 (590)
T 3kxw_A           11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA   73 (590)
T ss_dssp             SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            57899999999999999999873    58999999999999999999995                 8999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCC---hHHHHHHHhcCCceEEEechhHHHHHHHHh-hccCC--ceeccCCCCCCC
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGA--KFSLIPPVPNVS  150 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~  150 (409)
                      |+++++++++||+++|++++|+++..+   .+++.++++.+++++++++.+....+.... .....  ....+. .... 
T Consensus        74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  151 (590)
T 3kxw_A           74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-LESI-  151 (590)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-GGGC-
T ss_pred             CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-chhc-
Confidence            999999999999999999999999884   468899999999999999988766543322 11100  000000 0000 


Q ss_pred             CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (409)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~  230 (409)
                          ..............++++++|+|||||||.||+|.++|++++..+......++++++|++++.+|++|..|++..+
T Consensus       152 ----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~  227 (590)
T 3kxw_A          152 ----ELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCI  227 (590)
T ss_dssp             ----CGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTT
T ss_pred             ----cccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHH
Confidence                0001111123345678999999999999999999999999999999999999999999999999999999987668


Q ss_pred             HHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccce
Q 015313          231 LAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (409)
Q Consensus       231 ~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr  306 (409)
                      +.+++.|+++++.+.+    ++..+++.          ++++++|++.++|.++..+++.+...     .....++++||
T Consensus       228 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~lr  292 (590)
T 3kxw_A          228 LTPIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSWV  292 (590)
T ss_dssp             HHHHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTCC
T ss_pred             HHHHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhhH
Confidence            8999999999999876    67888888          78899999999999999988754321     12345789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccC---------------------------CCCCC
Q 015313          307 LMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPL---------------------------RGARK  353 (409)
Q Consensus       307 ~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~---------------------------~~~~~  353 (409)
                      .+++||+++++++.++|.+.++      .++++.||+||++++++...                           .....
T Consensus       293 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (590)
T 3kxw_A          293 TAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYK  372 (590)
T ss_dssp             EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEE
T ss_pred             HHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcce
Confidence            9999999999999999999883      37999999999987655321                           11234


Q ss_pred             ccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhhc
Q 015313          354 AGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLSS  406 (409)
Q Consensus       354 ~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~~  406 (409)
                      ..++|+|+++  ++|+|++ +++++.| +|||+|+||++++||||+|++|++.|.
T Consensus       373 ~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~  425 (590)
T 3kxw_A          373 LVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA  425 (590)
T ss_dssp             EECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHC
T ss_pred             EeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHh
Confidence            5678999987  8899988 6788888 899999999999999999999999974

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=9.6e-54  Score=423.79  Aligned_cols=362  Identities=17%  Similarity=0.215  Sum_probs=285.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC----------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~----------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~   70 (409)
                      ||+.+.|.++++++||++|+++..          +++||+||.++++++|+.|.+.                 |+ +||+
T Consensus        20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~   81 (562)
T 3ite_A           20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA   81 (562)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred             CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence            678899999999999999998743          7899999999999999999984                 88 7999


Q ss_pred             EEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC
Q 015313           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (409)
Q Consensus        71 V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (409)
                      |+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++....+     ........+.. ....
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~-~~~~  155 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDT-KNQS  155 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEET-TCHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecc-cchh
Confidence            99999999999999999999999999999999999999999999999999986543211     00000000000 0000


Q ss_pred             CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh--------cccCCCCeEEEecCchh
Q 015313          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH  222 (409)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~~  222 (409)
                      ..................++++++|+|||||||.||+|.++|+++.+.+..+...        +.+...+++++..|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (562)
T 3ite_A          156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF  235 (562)
T ss_dssp             HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred             hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence            0000000000011123356788999999999999999999999999877765443        34778899999999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEEccCcc-hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhh
Q 015313          223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (409)
Q Consensus       223 ~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  301 (409)
                      ..++. .++.++..|+++++.+.+. +..+++.          ++++++|++.++|++++.+...            ..+
T Consensus       236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~  292 (562)
T 3ite_A          236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED  292 (562)
T ss_dssp             THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred             hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence            88774 5788899999999987654 3555566          7779999999999988766432            236


Q ss_pred             hccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccc-cCCCCCCccccccccCCeEEEEeeCC-CCCCCCc
Q 015313          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG  379 (409)
Q Consensus       302 ~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~  379 (409)
                      +++||.+++||+++++++.++|.+.+++++++.||+||+++.++. ........+++|+|+++++++|+|++ +++++.|
T Consensus       293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g  372 (562)
T 3ite_A          293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG  372 (562)
T ss_dssp             STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTT
T ss_pred             cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCC
Confidence            789999999999999999999999889999999999999865543 22334566789999999999999965 5667877


Q ss_pred             -cceEEEeCcchhhhhcCCCcccchh-hcc--cC
Q 015313          380 -VGEICVKSPSLFKEYWKLPKESRTL-SSC--LY  409 (409)
Q Consensus       380 -~Gel~v~g~~~~~gY~~~~~~t~~~-~~g--~~  409 (409)
                       .|||+++||++++||||+|++|+.. .||  ||
T Consensus       373 ~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~  406 (562)
T 3ite_A          373 MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMY  406 (562)
T ss_dssp             SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEE
T ss_pred             CceEEEEeccccchhhCCCccccccccCCCCEEE
Confidence             8999999999999999999999877 566  87

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.7e-52  Score=447.20  Aligned_cols=355  Identities=22%  Similarity=0.329  Sum_probs=294.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      ++.+.|.++++++||++|+++.++++||+||.++++++|+.|++.                 |+++|++|+|+++|++++
T Consensus       465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~  527 (1304)
T 2vsq_A          465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL  527 (1304)
T ss_dssp             CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence            578899999999999999999999999999999999999999995                 899999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (409)
                      +++++||+++|++++|++|.++.+++.++++++++++++++.+....+..+..  ......+...   .   .. .....
T Consensus       528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~~~---~---~~-~~~~~  598 (1304)
T 2vsq_A          528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--TGTTLFIDDQ---T---RF-EEQAS  598 (1304)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--CSEEEESSCG---G---GG-GSCSS
T ss_pred             HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--CCcEEEeccc---c---cc-ccccC
Confidence            99999999999999999999999999999999999999999764322111100  0111111110   0   00 00011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~  241 (409)
                      .......++++++|+|||||||.||||.++|+++.+. .+....++++++|+++...|++|..+.+ .++.++..|++++
T Consensus       599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  676 (1304)
T 2vsq_A          599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI  676 (1304)
T ss_dssp             CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence            1122346789999999999999999999999999865 4445567788999999999999888774 5899999999999


Q ss_pred             EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (409)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~  318 (409)
                      +.+.   .++..+.+.          +.++++|+++++|++++.+.+..           ...+++||.+++||++++++
T Consensus       677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~  735 (1304)
T 2vsq_A          677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP  735 (1304)
T ss_dssp             ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred             ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence            9985   578888888          77799999999999999987641           12467899999999999999


Q ss_pred             HHHHHHHHhC-CccccccccccccccccccCC----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh
Q 015313          319 VMQQWETITG-HRLLERYGMTEFVMAISNPLR----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (409)
Q Consensus       319 ~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~  392 (409)
                      +.++|.+.++ ++++|.||+||+++.++....    ......++|+|+++++++|+|++++++|.| +|||+|+|+++++
T Consensus       736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~  815 (1304)
T 2vsq_A          736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSK  815 (1304)
T ss_dssp             HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCC
T ss_pred             HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCc
Confidence            9999999884 799999999999876553211    223456799999999999999999999998 8999999999999


Q ss_pred             hhcCCCcccchhh
Q 015313          393 EYWKLPKESRTLS  405 (409)
Q Consensus       393 gY~~~~~~t~~~~  405 (409)
                      ||||+|++|++.|
T Consensus       816 GY~~~p~~T~~~f  828 (1304)
T 2vsq_A          816 GYVNRADLTKEKF  828 (1304)
T ss_dssp             CBTTCHHHHHHHE
T ss_pred             cccCCcccchhhh
Confidence            9999999999986

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=5.5e-31  Score=246.96  Aligned_cols=218  Identities=17%  Similarity=0.192  Sum_probs=178.3

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHhcCCEEEE
Q 015313          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF  242 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~~l~~G~~i~~  242 (409)
                      ..++++++++|||||||.||+|.++|+++...+.+..   ...++.++|++++.+|+ .|..++.. .+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence            3678899999999999999999999999998887543   44567889999999999 89988865 566688999 666


Q ss_pred             ccCcchH-----------------------HHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313          243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (409)
Q Consensus       243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~  299 (409)
                      ...+++.                       .+++.          ++++++|++.++|+++..|++..        ....
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~  227 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL  227 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence            7666666                       55555          77899999999999999998762        2233


Q ss_pred             hhhccceEEEeeCCCCCHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCccccccc------cCCeEEEEeeC
Q 015313          300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVKIAED  371 (409)
Q Consensus       300 ~~~~~lr~v~~gG~~~~~~~~~~~~-~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p------~~~~~~~ivd~  371 (409)
                      .+++++|.+++||+++++++.+++. +.| ++++++.||+||+++++..++.     .++|.|      .|+++++|+|+
T Consensus       228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~  302 (369)
T 3hgu_A          228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDS  302 (369)
T ss_dssp             HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECT
T ss_pred             cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECC
Confidence            5678999999999999999999999 899 8999999999999876643321     158898      99999999998


Q ss_pred             -CCCCCCCc-cceEEEeCc---chhhhhcCCCcccchh-hcccC
Q 015313          372 -ESGSDAAG-VGEICVKSP---SLFKEYWKLPKESRTL-SSCLY  409 (409)
Q Consensus       372 -~~~~~~~~-~Gel~v~g~---~~~~gY~~~~~~t~~~-~~g~~  409 (409)
                       ++++++.| .|||+|++.   .++.+|+..+.+++.. .+||+
T Consensus       303 ~~g~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~  346 (369)
T 3hgu_A          303 ITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFA  346 (369)
T ss_dssp             TTCSBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCS
T ss_pred             CCCcCCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCc
Confidence             78999888 899999973   3467899988888876 78875

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=7.8e-31  Score=244.20  Aligned_cols=199  Identities=18%  Similarity=0.239  Sum_probs=169.9

Q ss_pred             CCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcch
Q 015313          169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (409)
Q Consensus       169 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~  248 (409)
                      .+++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|.+|+.. ++.++..|+++++.+... 
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~~-  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPTA-  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCCS-
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCccc-
Confidence            378999999999999999999999999999999999999999999999999999999864 788899999999886521 


Q ss_pred             HHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC
Q 015313          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~  328 (409)
                       +.++.          ++++++|++.++|+++..+++...         ...++++||.+++||+++++++.+++.+ ++
T Consensus       114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~  172 (358)
T 4gs5_A          114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA  172 (358)
T ss_dssp             -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred             -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence             22233          889999999999999999987522         3346899999999999999999999876 48


Q ss_pred             CccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCc
Q 015313          329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK  399 (409)
Q Consensus       329 ~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~  399 (409)
                      +++++.||+||+++.+..........+++|.+.|++++++.+.         |||+++|+....|||+--+
T Consensus       173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~~~~~g~~~TGD  234 (358)
T 4gs5_A          173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDER---------GCLHISGAVTNGQTVQTND  234 (358)
T ss_dssp             SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECTT---------SEEEEESGGGTTCCEEEEE
T ss_pred             ceEEeccccccccceeecccccccccceeeccCCCeEEEecCc---------CceEEecccccCcceecCC
Confidence            9999999999998766654444556788999999999998664         9999999988888876333

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.96  E-value=1.7e-29  Score=242.14  Aligned_cols=200  Identities=16%  Similarity=0.184  Sum_probs=166.8

Q ss_pred             CCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCc
Q 015313          170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF  246 (409)
Q Consensus       170 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~  246 (409)
                      +++++++|||||||.||+|.++|+++........   ...++.++|+++...|+.|..+.+..++.++..|+++++.+..
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  165 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG  165 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence            7889999999999999999999999987766653   3447889999999999987777766688899999999999988


Q ss_pred             chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHH
Q 015313          247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~  326 (409)
                      ++..+++.          ++++++|+++++|+++..|++..+...      ....++++|.+++||+++++++.+++.+.
T Consensus       166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~  229 (436)
T 3qov_A          166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRKIERM  229 (436)
T ss_dssp             CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred             CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence            99999888          777999999999999999988643211      11136899999999999999999999999


Q ss_pred             hCCcccccccccccccc-ccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEEEeCc
Q 015313          327 TGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       327 ~~~~v~~~YG~tE~g~~-~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~v~g~  388 (409)
                      ||+++++.||+||+++. +.....   .....|.|.++++++|+| +++++++.| .|||+|+|.
T Consensus       230 ~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~  291 (436)
T 3qov_A          230 LNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL  291 (436)
T ss_dssp             HTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES
T ss_pred             hCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc
Confidence            99999999999999544 322211   122366777899999999 678889888 899999985

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.96  E-value=5.1e-28  Score=231.95  Aligned_cols=202  Identities=19%  Similarity=0.115  Sum_probs=163.6

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHhcCCEEEE
Q 015313          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF  242 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~~l~~G~~i~~  242 (409)
                      ..++++++++|||||||.||+|.++|+++........   ..++++++|+++..+|+ .|..++. ..+.++..|+++++
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~  165 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP  165 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence            3567899999999999999999999999887665443   35678899999999998 5666664 47888999999999


Q ss_pred             ccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHH
Q 015313          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~  322 (409)
                      .+.+++..+++.          ++++++|+++++|+++..|++..+...      ....++++|.+++||+++++++.++
T Consensus       166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~  229 (437)
T 2y27_A          166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRVA  229 (437)
T ss_dssp             CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHHH
Confidence            988899999888          777999999999999999987643211      0113578999999999999999999


Q ss_pred             HHHHhCCccccccccccccc--cccccCCCCCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCc
Q 015313          323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSP  388 (409)
Q Consensus       323 ~~~~~~~~v~~~YG~tE~g~--~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~  388 (409)
                      +.+.+|+++++.||+||+++  +...+..   .....+.|.+++.++|+|++ +++++.| .|||+++|.
T Consensus       230 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~  296 (437)
T 2y27_A          230 IEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL  296 (437)
T ss_dssp             HHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred             HHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC
Confidence            99999999999999999843  3333322   11125567789999999954 8888888 899999984

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.95  E-value=6.2e-28  Score=231.79  Aligned_cols=202  Identities=19%  Similarity=0.131  Sum_probs=163.2

Q ss_pred             CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh---hcccCCCCeEEEecCch-hHHHHHHHHHHHHhcCCEEEE
Q 015313          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEF  242 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-~~~g~~~~~~~~l~~G~~i~~  242 (409)
                      ..++++++++|||||||.||+|.++|+++.........   .+++.++|+++...|++ |..++ ...+.++..|+++++
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP  167 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence            35688999999999999999999999998876655433   56788999999999995 55555 457888999999999


Q ss_pred             ccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHH
Q 015313          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~  322 (409)
                      .+.+++..+++.          ++++++|+++++|+++..|++..+...      ....++++|.+++||+++++++.++
T Consensus       168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~  231 (443)
T 2y4o_A          168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRNE  231 (443)
T ss_dssp             CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHHH
Confidence            998899999888          777999999999999999987633211      0113589999999999999999999


Q ss_pred             HHHHhCCccccccccccccc--cccccCCCCCCccccccccCCeEEEEeeC-CCCCCCCc-cceEEEeCc
Q 015313          323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSP  388 (409)
Q Consensus       323 ~~~~~~~~v~~~YG~tE~g~--~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~~~-~Gel~v~g~  388 (409)
                      +.+.+|+++++.||+||+++  +...+..   .....+.|.+++.++|+|+ ++++++.| .|||+|+|.
T Consensus       232 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~  298 (443)
T 2y4o_A          232 VETRVGIDALDIYGLSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL  298 (443)
T ss_dssp             HHHHHTCEEEEEEEETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred             HHHHhCcCEEeccCchhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC
Confidence            99999999999999999743  3333221   1112455678999999995 58888888 899999984

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=94.37  E-value=0.69  Score=44.77  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=26.4

Q ss_pred             CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313          167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA  197 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  197 (409)
                      ..++.+.+...||||| |.+|-+++|...+-.
T Consensus        90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~  121 (581)
T 4eql_A           90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN  121 (581)
T ss_dssp             TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence            4567788999999999 779999999997754

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=93.37  E-value=0.31  Score=47.16  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=26.4

Q ss_pred             CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313          167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA  197 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  197 (409)
                      ..++.+.++..||||| |.+|-+++|...+-.
T Consensus        95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            4456788999999999 779999999997765

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.23  E-value=1.2  Score=41.52  Aligned_cols=90  Identities=10%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY  102 (409)
Q Consensus        25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~  102 (409)
                      -.+|.+.+...+..++..+..                 +++.++|++....+.  +...+...++++..|+.+++++.. 
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-  169 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-  169 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred             EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence            368999998888887777766                 488999999998885  344455678888999999887654 


Q ss_pred             ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus       103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                      +.+.+...+++.++.+++..+..+..+.+.
T Consensus       170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  199 (437)
T 2y27_A          170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE  199 (437)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence            778888999999999999999887766554

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=92.08  E-value=0.61  Score=45.35  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313          167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA  197 (409)
Q Consensus       167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  197 (409)
                      ..++.+.++..||||| |+||.+.+|...+-.
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            4567788999999999 789999999998765

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.98  E-value=1.3  Score=41.32  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC--HHHHHHHHHHHhhCcEEEeCCCCC
Q 015313           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY  102 (409)
Q Consensus        25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~--~~~~~~~~A~~~~G~~~~~i~~~~  102 (409)
                      -.+|.+.+...+..++..+..                 +++.++|++....+.+  ...+...++++..|+.+++++.. 
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-  171 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-  171 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred             EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence            368999998888888877766                 4889999999988853  44455678888999999888665 


Q ss_pred             ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus       103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                      +.+.+...+++.++.+++..+..+..+.+.
T Consensus       172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  201 (443)
T 2y4o_A          172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDE  201 (443)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence            778888899999999999998877666553

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.69  E-value=1.4  Score=41.06  Aligned_cols=90  Identities=17%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY  102 (409)
Q Consensus        25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~  102 (409)
                      -.+|.+.+...+..++..+..                 +++.++|++....+-  ....+...++++..|+.+++.+.. 
T Consensus       104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-  165 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-  165 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred             EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence            368999999888888888877                 488999999998874  344555678889999999887654 


Q ss_pred             ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313          103 PESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus       103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                      +.+.+...+++.++.+++..+..+..+.+.
T Consensus       166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  195 (436)
T 3qov_A          166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV  195 (436)
T ss_dssp             CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence            677888899999999999999887766554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.51  E-value=6.2  Score=37.37  Aligned_cols=98  Identities=11%  Similarity=0.048  Sum_probs=73.2

Q ss_pred             CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH-HHHH
Q 015313           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA   83 (409)
Q Consensus        14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~-~~~~   83 (409)
                      .++.+|++.         ++-.+|.+.+...+..+...+                    ++.++|++...+|-.. -.+.
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~  220 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--------------------GFDRDTNWLSVLPIYHISGLS  220 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--------------------CCCTTCEEEECSCTTSHHHHH
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--------------------CCCccCEEEEeCcHHHHHHHH
Confidence            456777664         124789988887776655443                    7788999998888653 3334


Q ss_pred             HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313           84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus        84 ~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                      .+++++..|+.++..+. .+++.+...+++.++.++...+..+..+...
T Consensus       221 ~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  268 (501)
T 3ipl_A          221 VLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ  268 (501)
T ss_dssp             HHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred             HHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence            46778888998888764 6788899999999999999999887766554

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.85  E-value=10  Score=36.33  Aligned_cols=97  Identities=12%  Similarity=0.090  Sum_probs=71.0

Q ss_pred             CCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH--HH
Q 015313           15 RDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--VA   83 (409)
Q Consensus        15 ~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~--~~   83 (409)
                      |+.+|++.         ++-.+|.+.+...+......+                    ++.++|++...+|-+..+  ..
T Consensus       181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~~  240 (539)
T 1mdb_A          181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLSS  240 (539)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHHS
T ss_pred             cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhhH
Confidence            45666654         124789988877766655443                    778899998888865333  22


Q ss_pred             -HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313           84 -GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus        84 -~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                       .+++.+..|+.++..+. .+++.+...+++.++.++...+..+..+...
T Consensus       241 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  289 (539)
T 1mdb_A          241 PGVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDA  289 (539)
T ss_dssp             SHHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence             47888889998887654 5788888999999999999998877766543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=82.44  E-value=9.7  Score=36.58  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=70.0

Q ss_pred             CeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH--HHH
Q 015313           16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--VAG   84 (409)
Q Consensus        16 ~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~--~~~   84 (409)
                      +.+|++.         ++-.+|.+.+...+......+..                 .++.++|++....|-+..+  ...
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~  254 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT  254 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence            6677765         23478998887776655443322                 3778899998888865333  233


Q ss_pred             HHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313           85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN  131 (409)
Q Consensus        85 ~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  131 (409)
                      +++.+ .|+.++..+ ..+++.+...+++.++.+++..+..+..+..
T Consensus       255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            56666 999888775 4678889999999999999999987776654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=81.85  E-value=12  Score=35.89  Aligned_cols=98  Identities=12%  Similarity=0.094  Sum_probs=71.7

Q ss_pred             CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHH-
Q 015313           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA-   83 (409)
Q Consensus        14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~-   83 (409)
                      .++.+|++.         ++-.+|.+.+...+...+..+                    ++.++|++...+|-+..+-. 
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~  248 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--------------------GLNSNTRLLCALPAPHNFMLS  248 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--------------------CCCCCCeEEEecCcceEeecc
Confidence            356667664         124789998887777665543                    77889999988886543332 


Q ss_pred             --HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313           84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (409)
Q Consensus        84 --~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  132 (409)
                        .+++.+..|+.++..+. .++..+...+++.++.++...+..+..+...
T Consensus       249 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  298 (544)
T 3o83_A          249 SPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEK  298 (544)
T ss_dssp             SSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence              36788888998887754 4777788899999999999998877665443

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=81.49  E-value=4.9  Score=36.27  Aligned_cols=96  Identities=13%  Similarity=0.006  Sum_probs=65.2

Q ss_pred             cCCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH-HHH
Q 015313           13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFV   82 (409)
Q Consensus        13 ~~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~-~~~   82 (409)
                      .+.|.+|++.         ++-.+|.+.+...+..++..+                    ++.++|++...+|-+. -.+
T Consensus        34 w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~pl~h~~gl   93 (358)
T 4gs5_A           34 WLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--------------------SLGPGTRALVCLNVGYIAGL   93 (358)
T ss_dssp             HHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHH
T ss_pred             cCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--------------------CCCCCCEEEEECChHHHHHH
Confidence            3456677764         234799999887776665544                    7889999999888653 233


Q ss_pred             HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN  131 (409)
Q Consensus        83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  131 (409)
                      ..++..+..|+..+..++...   ....+++.++.++...+..+..+.+
T Consensus        94 ~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~  139 (358)
T 4gs5_A           94 MMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILE  139 (358)
T ss_dssp             HHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHH
T ss_pred             HHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhc
Confidence            445566677777766655432   2346788999999998877665543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=80.68  E-value=6.8  Score=35.36  Aligned_cols=86  Identities=8%  Similarity=-0.068  Sum_probs=61.9

Q ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY  102 (409)
Q Consensus        25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~  102 (409)
                      -.+|.+.+...+..++..+..                 .|+.++|++....+-  +.--....+++...|+.+++..  .
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~  169 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQH-----------------RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--I  169 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTT-----------------STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--C
T ss_pred             EEECHHHHHHHHHHHHhhHHh-----------------hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--C
Confidence            467888888888777666665                 488999999999886  2233344455588898655543  3


Q ss_pred             ChH-----------------------HHHHHHhcCCceEEEechhHHHHH
Q 015313          103 PES-----------------------ELLHVMHDSDISMVLSTEDYREVL  129 (409)
Q Consensus       103 ~~~-----------------------~~~~~l~~~~~~~vi~~~~~~~~~  129 (409)
                      ++.                       .+...+++.++.+++..+..+..+
T Consensus       170 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l  219 (369)
T 3hgu_A          170 DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL  219 (369)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred             ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence            444                       566688999999999998776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-60
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-47
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-44
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	6e-41
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-36
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-32
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-26

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  205 bits (522), Expect = 2e-60
 Identities = 74/421 (17%), Positives = 128/421 (30%), Gaps = 66/421 (15%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           D  AI       +  K  SY +L     R ++ L    +K                  G 
Sbjct: 87  DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIK-----------------KGD 129

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + I      E    +L     G +   +   +    +   + DS   +V++ ++     
Sbjct: 130 VVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAG 189

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFD----------------------QSQAEKMDGQ 167
           +++  K     +L  P         V                         S   + +  
Sbjct: 190 RSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM 249

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAWEYTSADQFLHCLPLHHVHGL 226
             EDP  I+YTSG+TGKPKGV+HT               ++Y   D +     +  V G 
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH 309

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
              L  PL  GAT              R  +            +      PT    L+  
Sbjct: 310 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVV------DKHQVNILYTAPTAIRALMAE 363

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH---RLLERYGMTEFVMA 343
            +        +S      LR++      +     + +    G     +++ +  TE    
Sbjct: 364 GDKAIEGTDRSS------LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 417

Query: 344 ISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKS--PSLFKEYWKLP 398
           +  PL GA   KAG+   P  GVQ  + ++E         G + +    P   +  +   
Sbjct: 418 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDH 477

Query: 399 K 399
           +
Sbjct: 478 E 478

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (428), Expect = 2e-47
 Identities = 67/426 (15%), Positives = 132/426 (30%), Gaps = 67/426 (15%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           +  AI           S +Y +L     +++ +L  +                +    G 
Sbjct: 74  NKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGD 117

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + +      E +  +L     G I   +   +  + L   ++D D  +V++T++     
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177

Query: 130 QNVASK---------------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR 168
           + + +K                     +           ++   T               
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVD 237

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
            EDP  ++YTSG+TG PKGV H+    +   +  +   ++    D F     +  + G  
Sbjct: 238 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 297

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
             +  PL  G              + R+ +            +T F   PT    L +  
Sbjct: 298 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDII------DEHKVTQFYVAPTALRLLKRAG 351

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR---LLERYGMTEFVMAI 344
           ++        S      LR +      +   V + +    G     +++ Y  TE    +
Sbjct: 352 DSYIENHSLKS------LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405

Query: 345 SNPLRGA---RKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKS--PSLFKEYWK 396
             PL G     K G+   P  G+   + +  +G +       G + VK+  PS  +  WK
Sbjct: 406 VTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465

Query: 397 LPKESR 402
                 
Sbjct: 466 NHDRYL 471

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  157 bits (398), Expect = 8e-44
 Identities = 70/409 (17%), Positives = 149/409 (36%), Gaps = 58/409 (14%)

Query: 16  DSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71
               +      +    +Y ++   A R+   L +  +                   G R+
Sbjct: 26  RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGV-----------------GDRV 68

Query: 72  GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131
             +    F  +         G +           E+ ++++ ++  ++L   +   +++ 
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIVYTSGTTGKPKGVV 189
           +  +       +            ++++  E+ D  R        + YT+GTTG PKGVV
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVV 188

Query: 190 HTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           ++H+++   +    L +    +  D  L  +P+ HV+       A L     V   P+  
Sbjct: 189 YSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 248

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              + + +            E +T   GVPT++  L    E+    L        K LR 
Sbjct: 249 PASLVELFDG----------EGVTFTAGVPTVWLALADYLESTGHRL--------KTLRR 290

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-----------PLRGARKAGT 356
           ++ G SA P  ++ ++E + G  + + YG+TE    +                       
Sbjct: 291 LVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAK 349

Query: 357 VGNPLPGVQVKIAEDESGS---DAAGVGEICVKSPSLFKEYWKLPKESR 402
            G P+P V++++A++E      D   +GE+ +K P +   Y+   + +R
Sbjct: 350 TGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATR 398

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  150 bits (378), Expect = 6e-41
 Identities = 82/418 (19%), Positives = 153/418 (36%), Gaps = 55/418 (13%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 21  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 71

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 72  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 120 LSTEDYREVLQNVASK--SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ---------- 167
             ++   + + NV  K     K  ++    +     +++    +    G           
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 183

Query: 168 -RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 184 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243

Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
            G+F   L  L  G  V  M +F      +  ++    +             VPT+++  
Sbjct: 244 FGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS----------ALLVPTLFSFF 292

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
            +       +L       +    +   G+           +      + + YG+TE   A
Sbjct: 293 AKSTLIDKYDL-------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345

Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPK 399
           I     G  K G VG  +P  + K+ + ++G        GE+CV+ P +   Y   P+
Sbjct: 346 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPE 403

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  136 bits (342), Expect = 4e-36
 Identities = 65/386 (16%), Positives = 130/386 (33%), Gaps = 48/386 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           ++VAI  + +  +Y +L   A +++ +     +                      +GI+ 
Sbjct: 38  NNVAIVCENEQLTYHELNVKANQLARIFIEKGIGK-----------------DTLVGIMM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++ N+   
Sbjct: 81  EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-- 138

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                        +  E T+  +         +  D A ++YTSGTTG PKG +  HK I
Sbjct: 139 -------FNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 191

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
                    +   T  D+      +     ++   +A L   +    +            
Sbjct: 192 SNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK----------- 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                +N     E       +  +              + +          L+  GS+  
Sbjct: 241 ---DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ-------TLITAGSATS 290

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P  V +  E +T          T               +  +G P+   Q+ I ++    
Sbjct: 291 PSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 350

Query: 376 DAAG-VGEICVKSPSLFKEYWKLPKE 400
            + G  GE+C+    L + YWK P+ 
Sbjct: 351 KSVGEAGELCIGGEGLARGYWKRPEL 376

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  124 bits (311), Expect = 8e-32
 Identities = 60/392 (15%), Positives = 125/392 (31%), Gaps = 44/392 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               EF   +   +  G + V    S+  SE+ +    ++ +  +  + Y        ++
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 136 SGAKFSLIPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                        V+ E   F       ++  K+   +  D A +  + G+TG  K +  
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-APLYAGATVEFMPKFSVR 249
           TH      ++   E      +  +L  LP+ H + L +  +   LYAG  V   P  S  
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
             +                            T L+     +  +  ++       L+++ 
Sbjct: 263 DAFPLIEREKV------------------TITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKI 368
            G +       ++ + + G  L + +GM E ++              T G P+       
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR 364

Query: 369 AEDESGSDAAG--VGEICVKSPSLFKEYWKLP 398
             D+   D      G +  + P   + Y+K  
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAE 396

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  108 bits (270), Expect = 2e-26
 Identities = 72/392 (18%), Positives = 141/392 (35%), Gaps = 40/392 (10%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
             ++A+ A     ++ +L +    +++ L ++ L+                    R+ +V
Sbjct: 18  HCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAVV 60

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
           A  S + V  +L     G +   L      +EL  ++   +++  +     +       S
Sbjct: 61  APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS 120

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            SGA+   I  + ++  +   +      +   +    PA I YTSGTTG PK  +   ++
Sbjct: 121 GSGAR---IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177

Query: 195 IDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
            +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F      
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           Q  ++          E +T+    PT    L        + L+  S      LR +    
Sbjct: 238 QLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFAG 281

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI--AE 370
           + +P  V++          +  YG TE + ++             G       V+I    
Sbjct: 282 ATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV 341

Query: 371 DESGSDAAGVGEICVKSPSLFKEYWKLPKESR 402
           DE  ++      I   S S F  Y   P+ + 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATA 373

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	86.55
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.54
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.2

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.9e-55  Score=437.37  Aligned_cols=375  Identities=19%  Similarity=0.232  Sum_probs=298.6

Q ss_pred             hHHH-HHHHhcccCCCeeEEEeC------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEE
Q 015313            2 EVFK-AAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (409)
Q Consensus         2 ~~~~-~l~~~~~~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~   74 (409)
                      |+.+ .|.++++.+||++|+++.      .+++||+||.++++++|+.|++                 +|+++||+|+++
T Consensus        72 N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-----------------~Gv~~Gd~V~i~  134 (643)
T d1pg4a_          72 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIY  134 (643)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEE
T ss_pred             hHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEe
Confidence            4444 455788889999999963      2579999999999999999999                 599999999999


Q ss_pred             eCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC---C-cee
Q 015313           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG---A-KFS  141 (409)
Q Consensus        75 ~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~---~-~~~  141 (409)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|++++.         ...+........   . ..+
T Consensus       135 ~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i  214 (643)
T d1pg4a_         135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI  214 (643)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred             cccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEE
Confidence            999999999999999999999999999999999999999999999997642         122222222111   1 111


Q ss_pred             ccCCCCCCCCCccccc---------cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHH-HHhhcccCCC
Q 015313          142 LIPPVPNVSSETTVFD---------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSA  211 (409)
Q Consensus       142 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~  211 (409)
                      ................         ..........+++++++|+|||||||.||||+++|++++..... ....++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~  294 (643)
T d1pg4a_         215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG  294 (643)
T ss_dssp             EECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTT
T ss_pred             EeccCCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCC
Confidence            1111111111111000         00111122345789999999999999999999999997755444 4556788999


Q ss_pred             CeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhh
Q 015313          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (409)
Q Consensus       212 d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~  287 (409)
                      |++++.+|++|.+++...++++|+.|+++++.++    +++..+++.          ++++++|+++++|++++.|++..
T Consensus       295 d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~l~~l~~~~  364 (643)
T d1pg4a_         295 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEG  364 (643)
T ss_dssp             CEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTG
T ss_pred             CEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHHCCcEEEehHHHHHHHHhCc
Confidence            9999999999999987778899999999999865    377888888          78899999999999999998763


Q ss_pred             hhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC--CCCCCccccccccC
Q 015313          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLP  362 (409)
Q Consensus       288 ~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~--~~~~~~~~~G~p~~  362 (409)
                      ..      .....++++||.+++||+++++++.+++.+.++   +++++.||+||+++++....  ....+.+++|+|++
T Consensus       365 ~~------~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~  438 (643)
T d1pg4a_         365 DK------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF  438 (643)
T ss_dssp             GG------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT
T ss_pred             ch------hccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccC
Confidence            22      224567899999999999999999999999984   67999999999987665432  23457889999999


Q ss_pred             CeEEEEeeCCCCCCCCc-cceEEEeC--cchhhhhcCCCcccchh----hcccC
Q 015313          363 GVQVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESRTL----SSCLY  409 (409)
Q Consensus       363 ~~~~~ivd~~~~~~~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~  409 (409)
                      |++++|+|++|++++.+ .|||+++|  |+++.|||++++.+.+.    .+|||
T Consensus       439 g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~  492 (643)
T d1pg4a_         439 GVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  492 (643)
T ss_dssp             TCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             CCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence            99999999999999888 89999999  57899999999988875    47886

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-53  Score=418.15  Aligned_cols=372  Identities=17%  Similarity=0.269  Sum_probs=301.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC----ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~----~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      +|+.+.|+++++++||++|+++..    +++||+||++++.++|+.|.+.                 |+++||+|+|+++
T Consensus        11 ~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~   73 (534)
T d1v25a_          11 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF   73 (534)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHC-----------------CcCCCCEEEEEeC
Confidence            578999999999999999999832    4699999999999999999995                 9999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCC-CCCc-c
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-SSET-T  154 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~  154 (409)
                      |+++++++++||+++|++++|+++.++.+++.++++.+++++++++.........+..........+...... .... .
T Consensus        74 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T d1v25a_          74 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY  153 (534)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred             CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccc
Confidence            9999999999999999999999999999999999999999999999998888877765544322221111111 1100 0


Q ss_pred             ccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh--hcccCCCCeEEEecCchhHHHHHHHHHH
Q 015313          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (409)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~d~~l~~~pl~~~~g~~~~~~~  232 (409)
                      ..............++++++++|||||||.||+|.++|.+++..+.....  .......|++++.+|++|..++...+. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-  232 (534)
T d1v25a_         154 EEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA-  232 (534)
T ss_dssp             HHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHH-
T ss_pred             cccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccce-
Confidence            01111112233456788999999999999999999999999876655433  345678899999999999999977454 


Q ss_pred             HHhcCCEEEEc-cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEee
Q 015313          233 PLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (409)
Q Consensus       233 ~l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~g  311 (409)
                      .+..|+++++. +.+++..++..          +.++++|++.++|.++..++...        .....++++||.+++|
T Consensus       233 ~~~~g~~~v~~~~~~~~~~~~~~----------~~~~~vt~~~~~p~~~~~~~~~~--------~~~~~~~~~lr~~~~g  294 (534)
T d1v25a_         233 ATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYL--------ESTGHRLKTLRRLVVG  294 (534)
T ss_dssp             HHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHH--------HHHTCCCSSCCEEEEC
T ss_pred             eeeecceeeeccccccccccchh----------hhhccccccccCchhhhhhhhhh--------ccccccccceeEEEEe
Confidence            45555555554 55788888888          77799999999999999998763        3345688999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCccccccccCCeEEEEeeCCCCCCCC--
Q 015313          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-----------RKAGTVGNPLPGVQVKIAEDESGSDAA--  378 (409)
Q Consensus       312 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~-----------~~~~~~G~p~~~~~~~ivd~~~~~~~~--  378 (409)
                      |+++++++.+++++ ++.++++.||+||++.++.......           ...+++|+|+||++++|+|+++++++.  
T Consensus       295 G~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~  373 (534)
T d1v25a_         295 GSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG  373 (534)
T ss_dssp             SSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSS
T ss_pred             cCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCC
Confidence            99999999998875 4899999999999997765432111           234689999999999999999988765  


Q ss_pred             c-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          379 G-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       379 ~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      + +|||+|+||+++.|||++|+.|++.  .||||
T Consensus       374 ~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~  407 (534)
T d1v25a_         374 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFF  407 (534)
T ss_dssp             CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCE
T ss_pred             CeeEEEEEcCCcccceecCChhhhhhhcccCCCC
Confidence            3 7999999999999999999999888  68897

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=4.3e-52  Score=408.12  Aligned_cols=372  Identities=21%  Similarity=0.290  Sum_probs=299.1

Q ss_pred             hHHHHHHHhcccC---CCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313            2 EVFKAAYKKGSMA---RDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (409)
Q Consensus         2 ~~~~~l~~~~~~~---~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~   76 (409)
                      ++.+.|.+.++++   |+++|+.+.  ++++||+||++++.++|++|++                 +|+++||+|+|+++
T Consensus        18 t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-----------------~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_          18 TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCSE   80 (541)
T ss_dssp             CHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECS
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeC
Confidence            3556666666665   888899874  4689999999999999999999                 59999999999999


Q ss_pred             CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCcee--ccCCCCCCCCCcc
Q 015313           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS--LIPPVPNVSSETT  154 (409)
Q Consensus        77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  154 (409)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.++.........  .............
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS  160 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEE
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccch
Confidence            99999999999999999999999999999999999999999999999998888877766553322  2222111111111


Q ss_pred             cccc-----------chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCc
Q 015313          155 VFDQ-----------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPL  220 (409)
Q Consensus       155 ~~~~-----------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl  220 (409)
                      ....           ....+.....++++++|+|||||||.||+|.++|++++..........   ....++++++.+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (541)
T d1lcia_         161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF  240 (541)
T ss_dssp             HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence            1000           001112233467899999999999999999999999988777665443   56778999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhh
Q 015313          221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (409)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  300 (409)
                      +|..++.. .+..+..++..+.....+....+..          +.++++|.+.++|.++..+++...        ....
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~~--------~~~~  301 (541)
T d1lcia_         241 HHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDKY  301 (541)
T ss_dssp             TSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEECCHHHHHHHHHCSC--------GGGS
T ss_pred             cccccccc-cccccccccccccccccccchhHHH----------HhhhhccccccCcccccccccccc--------cccc
Confidence            99999865 7777888899998888888888887          677899999999999999987633        3445


Q ss_pred             hhccceEEEeeCCCCCHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCccccccccCCeEEEEeeCC-CCCCCC
Q 015313          301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAA  378 (409)
Q Consensus       301 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~  378 (409)
                      +++++|.+++||+++++...+++.+.++. .+++.||+||+++.++.........+++|+|+|+++++|+|++ +++++.
T Consensus       302 ~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~  381 (541)
T d1lcia_         302 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV  381 (541)
T ss_dssp             CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcCCCC
Confidence            78899999999999999999999999865 6889999999998877766677788999999999999999965 677777


Q ss_pred             c-cceEEEeCcchhhhhcCCCcccchh--hcccC
Q 015313          379 G-VGEICVKSPSLFKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       379 ~-~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~  409 (409)
                      | .|||+|+|++++.|||++++.+...  .||||
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~  415 (541)
T d1lcia_         382 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWL  415 (541)
T ss_dssp             TCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCE
T ss_pred             CCeEEEEEccCccCCeeCCChhhhhhcccCCccc
Confidence            7 8999999999999999999998877  67887

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-52  Score=418.59  Aligned_cols=374  Identities=18%  Similarity=0.266  Sum_probs=295.1

Q ss_pred             HHHHHHhcccCCCeeEEEeC------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC
Q 015313            4 FKAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (409)
Q Consensus         4 ~~~l~~~~~~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~   77 (409)
                      ...|.++++++||++|+++.      .+++||+||.++++++|++|++.                +|+++||+|+|+++|
T Consensus        62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~----------------~Gv~~Gd~V~i~~~n  125 (640)
T d1ry2a_          62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGDTVAVYMPM  125 (640)
T ss_dssp             HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT----------------SCCCTTCEEEECCCS
T ss_pred             HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            45677899999999999963      26899999999999999999742                599999999999999


Q ss_pred             CHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccCCce--eccCCC
Q 015313           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGAKF--SLIPPV  146 (409)
Q Consensus        78 ~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~--~~~~~~  146 (409)
                      +++++++++||+++|++++|+++.++.+++.++++++++++++++...         ...+...........  ......
T Consensus       126 ~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (640)
T d1ry2a_         126 VPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT  205 (640)
T ss_dssp             SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccc
Confidence            999999999999999999999999999999999999999999998642         233333333222111  111111


Q ss_pred             CCCCCC-ccccc---------cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH-hhcccCCCCeEE
Q 015313          147 PNVSSE-TTVFD---------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFL  215 (409)
Q Consensus       147 ~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~d~~l  215 (409)
                      ...... .....         ...........++++++|+|||||||.||||+++|++++....... ..+.+.++|+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l  285 (640)
T d1ry2a_         206 NNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF  285 (640)
T ss_dssp             CCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCccccee
Confidence            110000 00000         0011112234568999999999999999999999999887655544 456888999999


Q ss_pred             EecCchhHHHHHHHHHHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhh
Q 015313          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (409)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~  291 (409)
                      +.+|++|.++++..++.+|..|+++++.+..    ++..+++.          ++++++|++.++|++++.|.+....  
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--  353 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS--  353 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT--
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHhCccEEEcChHHHHHHHhcccc--
Confidence            9999999999877788999999999988754    67888888          7889999999999999988764321  


Q ss_pred             HHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC---CCCCCccccccccCCeE
Q 015313          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQ  365 (409)
Q Consensus       292 ~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~~~  365 (409)
                          .....++++||.+++||+++++++.+++.+.+|   .++++.||+||++.......   ....+.+++|.|+|+++
T Consensus       354 ----~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~  429 (640)
T d1ry2a_         354 ----YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGID  429 (640)
T ss_dssp             ----SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCC
T ss_pred             ----ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCce
Confidence                123457899999999999999999999999986   46899999999987655322   23457789999999999


Q ss_pred             EEEeeCCCCCC--CCc-cceEEEeC--cchhhhhcCCCcccchh----hcccC
Q 015313          366 VKIAEDESGSD--AAG-VGEICVKS--PSLFKEYWKLPKESRTL----SSCLY  409 (409)
Q Consensus       366 ~~ivd~~~~~~--~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~  409 (409)
                      ++|+|+++...  +.+ .|||+++|  |+++.|||++|++|.+.    .+|||
T Consensus       430 ~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~  482 (640)
T d1ry2a_         430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY  482 (640)
T ss_dssp             EEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred             EEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeE
Confidence            99999887554  333 69999998  68999999999999887    34897

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=5.4e-50  Score=390.75  Aligned_cols=356  Identities=21%  Similarity=0.359  Sum_probs=289.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (409)
Q Consensus         1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~   80 (409)
                      +||.++|+++++++||++|++++++++||+||+++++++|+.|++.                 |+++||+|+++++|+++
T Consensus        23 ~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~-----------------Gv~~gd~Vai~~~n~~~   85 (514)
T d1amua_          23 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID   85 (514)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHc-----------------CcCCcCEEEEEeCCCHH
Confidence            4789999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (409)
Q Consensus        81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
                      |+++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......   ...........      ....
T Consensus        86 ~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~  156 (514)
T d1amua_          86 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG---QVEIFEEDTIK------IREG  156 (514)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS---EEEECCCSTTT------TSCC
T ss_pred             HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc---ccccccccccc------cccc
Confidence            99999999999999999999999999999999999999999998777654332211   11111100000      0000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (409)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i  240 (409)
                      ........++++++|+|||||||.||+|.++|.++..........+.....|+++...|++|..+++. ++.++..|+++
T Consensus       157 ~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~  235 (514)
T d1amua_         157 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASL  235 (514)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEE
T ss_pred             ccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc-ccccccccccc
Confidence            11122345788999999999999999999999999999999999999999999999999999999864 78889999999


Q ss_pred             EEccCcc---hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          241 EFMPKFS---VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       241 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      ++.....   ....++.          +..+.++.+...|......              ...++++++.+++||+++++
T Consensus       236 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~G~~~~~  291 (514)
T d1amua_         236 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHL--------------DPERILSIQTLITAGSATSP  291 (514)
T ss_dssp             EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTS--------------CTTTCCSCSEEEEESSCCCH
T ss_pred             cccccccccchhhhhhh----------hhhhhcccccceeeecccc--------------cccccccccEEEEecccCCH
Confidence            9887533   3444444          5667888888888765432              23468899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccccC---CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhh
Q 015313          318 PVMQQWETITGHRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (409)
Q Consensus       318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~g  393 (409)
                      ++.+++.+  +..+++.||+||++.++....   .......+.|.+.++.++++.|++++.++.| .|||+|+||++++|
T Consensus       292 ~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~g  369 (514)
T d1amua_         292 SLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARG  369 (514)
T ss_dssp             HHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred             HHhhhhcc--ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCccccc
Confidence            99887765  578999999999997765322   2334456788999999999999999999888 89999999999999


Q ss_pred             hcCCCcccchhh--------cccC
Q 015313          394 YWKLPKESRTLS--------SCLY  409 (409)
Q Consensus       394 Y~~~~~~t~~~~--------~g~~  409 (409)
                      ||++|+.+.+.+        ||||
T Consensus       370 Y~~~~~~~~~~~~~~~~~~~~~~~  393 (514)
T d1amua_         370 YWKRPELTSQKFVDNPFVPGEKLY  393 (514)
T ss_dssp             ETTCHHHHHHHEEECSSSTTSEEE
T ss_pred             ccccccccceeeEeccccCCCceE
Confidence            999999998874        6776

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.7e-49  Score=383.63  Aligned_cols=371  Identities=17%  Similarity=0.231  Sum_probs=301.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~   81 (409)
                      |+.++|+++|+++||++|+++.++++||+||+++++++|+.|.+                 +|+++||+|+|+++|++++
T Consensus        26 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~V~i~~~n~~~~   88 (536)
T d1mdba_          26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKEF   88 (536)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHHH
Confidence            68899999999999999999999999999999999999999998                 5999999999999999999


Q ss_pred             HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHH-----HHHHHhhccCC--ceeccCCCCCCCCCcc
Q 015313           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE-----VLQNVASKSGA--KFSLIPPVPNVSSETT  154 (409)
Q Consensus        82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~  154 (409)
                      +++++||+++|++++|+++..+.+++.++++.++++++++++....     ...........  ................
T Consensus        89 ~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (536)
T d1mdba_          89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLED  168 (536)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGG
T ss_pred             HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhh
Confidence            9999999999999999999999999999999999999999753221     11111111110  1111111111111111


Q ss_pred             ccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHH-HH
Q 015313          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-AP  233 (409)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~-~~  233 (409)
                      .  .......+...++|+++|+|||||||.||+|.+||+++...+......+...++|++++..|+.|.+++...++ ..
T Consensus       169 ~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~  246 (536)
T d1mdba_         169 L--HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV  246 (536)
T ss_dssp             C--CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred             c--ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccc
Confidence            1  11112233457889999999999999999999999999999999999999999999999999999998743333 44


Q ss_pred             HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (409)
Q Consensus       234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~  313 (409)
                      +..|.+++..+.+++..++..          +++++++.+..+|..+..+...        .......+++++.+++||+
T Consensus       247 ~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gG~  308 (536)
T d1mdba_         247 LYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDA--------ASSRRDDLSSLQVLQVGGA  308 (536)
T ss_dssp             HHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHH--------HHHCCCCCTTCCEEEEESS
T ss_pred             ccccccccccCCCCHHHHHHH----------Hhhhccccccccchhhhhhhhh--------ccccccccCcceeEEEecc
Confidence            455788888888899998888          7789999999999999988775        2345567899999999999


Q ss_pred             CCCHHHHHHHHHHhCCccccccccccccccccc-cCCCCCCccccccccC-CeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLP-GVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (409)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~-~~~~~ivd~~~~~~~~~-~Gel~v~g~~~  390 (409)
                      ++++...+++.+.++......|+.+|.+..... ........+++|.|++ +..+.|.++++++++.+ .|||+++|+++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~  388 (536)
T d1mdba_         309 KFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYT  388 (536)
T ss_dssp             CCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTS
T ss_pred             ccccccccchhhccCceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCcc
Confidence            999999999999999999999999987755443 3333445678999985 56778888888888777 89999999999


Q ss_pred             hhhhcCCCcccchh--hcccC
Q 015313          391 FKEYWKLPKESRTL--SSCLY  409 (409)
Q Consensus       391 ~~gY~~~~~~t~~~--~~g~~  409 (409)
                      +.||+++++.+...  .+|||
T Consensus       389 ~~gY~~~~~~~~~~~~~~~~~  409 (536)
T d1mdba_         389 IRGYYKAEEHNAASFTEDGFY  409 (536)
T ss_dssp             CSSCTTCHHHHHHHBCTTSCE
T ss_pred             ccccccccccccccccccCcc
Confidence            99999999999888  56786

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4.6e-44  Score=346.91  Aligned_cols=372  Identities=20%  Similarity=0.232  Sum_probs=300.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (409)
Q Consensus         2 ~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~   79 (409)
                      |+.++|+++++++||++|+++.  ++++||+||.+++.++|++|++.                 |+++||+|+|+++|++
T Consensus         3 ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------Gv~~gd~V~i~~~n~~   65 (503)
T d3cw9a1           3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNSA   65 (503)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHc-----------------CcCCCCEEEEEeCCCH
Confidence            6889999999999999999974  56999999999999999999994                 8999999999999999


Q ss_pred             HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccc
Q 015313           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (409)
Q Consensus        80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (409)
                      ++++++|||+++|++++|+++.++++++.+++++++++++|++..................+.+......   .......
T Consensus        66 ~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~  142 (503)
T d3cw9a1          66 DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD---GEPYSYG  142 (503)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEET---TEECCCS
T ss_pred             HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhh---hcccccC
Confidence            9999999999999999999999999999999999999999998764433222222222222222110000   0001111


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcc--cCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (409)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G  237 (409)
                      ........+++++++++|||||||.||+|.++|+++...+......+.  ....+..++.+|+.|..+.....+.+...+
T Consensus       143 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (503)
T d3cw9a1         143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (503)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred             CccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccc
Confidence            112223456789999999999999999999999999999888877654  456689999999988888777778888999


Q ss_pred             CEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (409)
Q Consensus       238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~  317 (409)
                      +++++.+.+++..++..          +.+++++.+..+|..+..+......      ......+++||.+++||+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Lr~i~~gG~~~~~  286 (503)
T d3cw9a1         223 GTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGATMPD  286 (503)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHHH------TCTTCCCTTCCEEEECSSCCCH
T ss_pred             cccccccccChHHhhhh----------hhhceeecccccccccccccccccc------ccccccccceEEEEeccccccc
Confidence            99999999999999888          6778999999999999988765332      2234567899999999999999


Q ss_pred             HHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc-chhhhhc
Q 015313          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP-SLFKEYW  395 (409)
Q Consensus       318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~-~~~~gY~  395 (409)
                      ++...+.+.++..+.+.||++|++..+...........+.+.+.+.....+.+..++.++.| .|++++++. ....||+
T Consensus       287 ~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~  366 (503)
T d3cw9a1         287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL  366 (503)
T ss_dssp             HHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBT
T ss_pred             cccccccccccccccccccccccceeeeeccccccccccccccccceeeeeecccCcccCCCcccccccccccccccccc
Confidence            99999999999999999999999987776655555566666666667777777878888777 788877765 5577899


Q ss_pred             CCCcccchh-hcccC
Q 015313          396 KLPKESRTL-SSCLY  409 (409)
Q Consensus       396 ~~~~~t~~~-~~g~~  409 (409)
                      ++++.|++. .||||
T Consensus       367 ~~~~~t~~~~~~g~~  381 (503)
T d3cw9a1         367 NQPQATAEKLQDGWY  381 (503)
T ss_dssp             TCHHHHHHHEETTEE
T ss_pred             CChhhhHHHhcCCce
Confidence            999999888 78997

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=86.55  E-value=1.9  Score=38.84  Aligned_cols=115  Identities=14%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             EEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccC-cchH
Q 015313          174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVR  249 (409)
Q Consensus       174 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~  249 (409)
                      .+.++.+.++    ..+|++.+...+..+...+   ++.++|++...++-+-  .++..+++++..|+..+.++. .+.+
T Consensus        36 ~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~  109 (541)
T d1lcia_          36 TIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNER  109 (541)
T ss_dssp             CEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHH
T ss_pred             eEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHH
Confidence            3444554444    4689999998777765544   6889999988887653  334568899999999998875 4556


Q ss_pred             HHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCC
Q 015313          250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP  316 (409)
Q Consensus       250 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~  316 (409)
                      .+...          ++..+++.++.....+..+.+..            ..++.++.+++.....+
T Consensus       110 ~l~~~----------l~~~~~~~vi~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  154 (541)
T d1lcia_         110 ELLNS----------MNISQPTVVFVSKKGLQKILNVQ------------KKLPIIQKIIIMDSKTD  154 (541)
T ss_dssp             HHHHH----------HHHHCCSEEEECGGGHHHHHHHH------------HHCTTCCEEEETTCSSC
T ss_pred             HHHHH----------HHhccceEEeeeccccccchhcc------------ccccccceeeeecCCcc
Confidence            65555          56679999999998887766531            24566777777654433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=5.1  Score=29.83  Aligned_cols=57  Identities=11%  Similarity=-0.041  Sum_probs=38.5

Q ss_pred             ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313           63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST  122 (409)
Q Consensus        63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~  122 (409)
                      +++++|++|+|....+.--..+...+...|+.++.+..  +++. ...+++.+++.++..
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH   80 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence            57999999999997564444444444777887766643  3443 455677888888743

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.20  E-value=4.6  Score=30.13  Aligned_cols=67  Identities=12%  Similarity=0.037  Sum_probs=44.5

Q ss_pred             ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe--chhHHHHHHHHh
Q 015313           63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVLQNVA  133 (409)
Q Consensus        63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~~~~~  133 (409)
                      ..+++||+|++....+ .-.++..+| ...|+.++.+..+  ++.. ..+++.+++.+|.  +++..+.+.+..
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqla-k~~Ga~Vi~~~~s--~~k~-~~~~~lGa~~vi~~~~~d~~~~v~~~t   93 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGT--AQKA-QSALKAGAWQVINYREEDLVERLKEIT   93 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESS--HHHH-HHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             hCCCCCCEEEEEccccccchHHHHHH-HHhCCeEeecccc--hHHH-HHHHhcCCeEEEECCCCCHHHHHHHHh
Confidence            4789999999998888 555555554 5688877766433  4443 4456778888874  344455555543