Citrus Sinensis ID: 015331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccEEEcHHHHHHHHHccccHHHHHcccccccEEEEEcccccEEEEEccccccccccccEEEEcHHHHHHHHHHHcccccEEcccEEEEEEEEccEEEEEEccccEEEccEEEEcccccHHHHccccccccccccEEEEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEEEcccccccccccccccHHHHHHHHcccccHHHHHHHHccccccEEEccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccHHHHHHHHHHHHcccEEEEEEccHHcccccccHcccHHHHHHHHHcccHHHHHHHccccccEEEEEcccccEEcccccccHHcccccccEEEcHHHHHHHHHHHcccccEEEccEEEEEEEccccEEEEEccccEEEEEEEEEccccHHHHHHHHccccccccccEEEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHccHHHHcHccHcccccHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAssvscqpaseisfktkgnrgghevRSVKRSLLMEALErelpsgtirysSKVVSVEEsglfklvnladgavfktKVLIGCDGVNSVVAKWLgfkkpafagrsdirgctdfklrhglepkfqqflgkgfrygflpcndqtVYWFfnwcpsnqdkelegnpdktkQFVLSKCHDLPEQVKAIVEntpldsilvsplryrypwevlwgniskgnvcvagdafhpmtpdigqggcaaLEDGIILARCIAeastekpsgvtkdkagedkeEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS
Flexible Loop (DISEMBL)
MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASeisfktkgnrgghevrsVKRSLLMEALErelpsgtiryssKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGfkkpafagrsdIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAiventpldsilvsPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAeastekpsgvtkdkagedkeefkrneiglkryaterrwrsCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKIlefdcgklcis
Low Complexity Region (SEG)
MEEDEDIVIVGAGIAGLTTSLALHRLGIrslvlesseslrvTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS
Disordered region (IsUnstruct)
******IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV***************************************GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCP***************QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIA**************************IGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCI*
Disordered Region (DISOPRED)
***DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD****GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCI*
Disordered Region (DISEMBL)
MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFK**********RSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEA****************KEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS
Disordered Region (DISPRO)
****EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKL***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
A6T923	384	FAD-dependent urate hydro	yes	no	0.738	0.786	0.249	3e-21
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.738	0.786	0.249	3e-21
Q9FGC7	667	Zeaxanthin epoxidase, chl	no	no	0.809	0.496	0.268	5e-17
O81360	661	Zeaxanthin epoxidase, chl	N/A	no	0.836	0.517	0.270	3e-16
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.733	0.761	0.269	1e-15
Q40412	663	Zeaxanthin epoxidase, chl	N/A	no	0.735	0.453	0.273	1e-15
B5B0J6	384	FAD-dependent urate hydro	yes	no	0.738	0.786	0.234	2e-15
Q0JCU7	659	Zeaxanthin epoxidase, chl	no	no	0.740	0.459	0.274	3e-15
P93236	669	Zeaxanthin epoxidase, chl	N/A	no	0.733	0.448	0.275	4e-15
P86491	385	6-hydroxynicotinate 3-mon	no	no	0.665	0.706	0.270	2e-13

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 11/313 (3%)

Query: 8   VIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQ 67
           +++GAGI GL+ ++AL + GI   V E+ + ++  G AI++W N  + +  +G+ D +  
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 68  QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
               L+ M      S +  ++ S      R G     V R+ L   +       ++++  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
           +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct: 124 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 183

Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
           +         ++  F+G+G R   +P +    Y+FF+   P+   ++ +       ++  
Sbjct: 184 EIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 243

Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
                + + + A+   T  + I +  +         +  + +G V + GDA H  TPDIG
Sbjct: 244 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 295

Query: 305 QGGCAALEDGIIL 317
           QGGCAA+ED ++L
Sbjct: 296 QGGCAAMEDAVVL 308

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 11/313 (3%)

Query: 8   VIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQ 67
           +++GAGI GL+ ++AL + GI   V E+ + ++  G AI++W N  + +  +G+ D +  
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 68  QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
               L+ M      S +  ++ S      R G     V R+ L   +       ++++  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
           +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct: 124 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 183

Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
           +         ++  F+G+G R   +P +    Y+FF+   P+   ++ +       ++  
Sbjct: 184 EIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 243

Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
                + + + A+   T  + I +  +         +  + +G V + GDA H  TPDIG
Sbjct: 244 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 295

Query: 305 QGGCAALEDGIIL 317
           QGGCAA+ED ++L
Sbjct: 296 QGGCAAMEDAVVL 308

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae (taxid: 573)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 156/372 (41%), Gaps = 41/372 (11%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTGF---AITLWTNAWRALDAVGIS 62
           +++ G GI GL  +LA  + G   LV E    ++R  G     I + +NA  AL+A+ I 
Sbjct: 83  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIE 142

Query: 63  DSLRQQHI------QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
            + +          ++ G+V   S +     + +F    +RG    R + R  L + L R
Sbjct: 143 VAEQVMEAGCITGDRINGLVDGISGTWYVKFD-TFTPAASRGLPVTRVISRMTLQQILAR 201

Query: 117 ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL-GFKKPAF 175
            +    IR  S VV  E+SG    V L +G  ++  +L+G DG+ S V   L G  +  +
Sbjct: 202 AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATY 261

Query: 176 AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF-FNWCPSNQDKELEG 234
           +G +   G  DF         ++ FLG    +         + W+ F+  P+       G
Sbjct: 262 SGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNG 321

Query: 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
              +  +     C ++ + + A  E    ++IL   +  R P    WG   KG V + GD
Sbjct: 322 MKKRLFEIFDGWCDNVLDLLHATEE----EAILRRDIYDRSPG-FTWG---KGRVTLLGD 373

Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEA-----STEKPSGVTKDKAGEDKEEFKRNEI 349
           + H M P++GQGGC A+ED   LA  + EA      T  P  V                 
Sbjct: 374 SIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETTTPVDVVS--------------- 418

Query: 350 GLKRYATERRWR 361
            LKRY   RR R
Sbjct: 419 SLKRYEESRRLR 430

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, ABA-dependent stomatal closure, seed development and dormancy, modulation of defense gene expression and disease resistance and non-photochemical quencing (NPQ). Through its role in ABA biosynthesis, regulates the expression of stress-responsive genes such as RD29A during osmotic stress and is required for normal plant growth during vegetative development. Is required for late skotomorphogenic growth through its role in the xanthophyll carotenoids neoxanthin, violaxanthin and antheraxanthin biosynthesis. Required for beta-aminobutyric acid (BABA)-induced priming in disease resistance, tolerance to salt and drought stresses and sterility. Participates in NPQ by regulating the level of zeaxanthin in photosynthetic energy conversion. NPQ is a process that maintains the balance between dissipation and utilization of light energy to minimize the generation of oxidizing molecules and the molecular damages they can generate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 162/377 (42%), Gaps = 35/377 (9%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTGF---AITLWTNAWRALDAVGIS 62
           I++ G GI GL  +LA  + G   +V E    ++R  G     I + +NA  AL+A+ + 
Sbjct: 83  ILVAGGGIGGLVFALAAKKKGFDVVVFEKDLSAVRGEGQYRGPIQIQSNALAALEAIDMD 142

Query: 63  DSLRQQHI------QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
            +     +      ++ G+V   S +     + +F     RG    R + R  L + L R
Sbjct: 143 VAEEVMRVGCVTGDRINGLVDGVSGTWYVKFD-TFTPAVERGLPVTRVISRIALQQILAR 201

Query: 117 ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL-GFKKPAF 175
            +    I   S VV+ E+ G    V L +G  ++  +L+G DG+ S V K L G  +  +
Sbjct: 202 AVGEEIIINDSNVVNFEDLGDKVNVILENGQRYEGDMLVGADGIWSKVRKNLFGLNEAVY 261

Query: 176 AGRSDIRGCTDFKLRHGLEPKFQQFLG--KGFRYGFLPCNDQTVYWFFNWCPSNQDKELE 233
           +G +   G  DF         ++ FLG  + F    +       Y F    P   D    
Sbjct: 262 SGYTCYTGIADFVPADINSVGYRVFLGHKQYFVSSDVGGGKMQWYAFHKESPGGVD---- 317

Query: 234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAG 293
            +P+  K+ +L       + V  ++  T  D+IL   +  R P  + WG   KG+V + G
Sbjct: 318 -SPNGKKERLLKIFEGWCDNVIDLLLATEEDAILRRDIYDRTPI-LTWG---KGHVTLLG 372

Query: 294 DAFHPMTPDIGQGGCAALEDGIILARCIAEA-STEKPSGVTKDKAGEDKEEFKRNEIGLK 352
           D+ H M P++GQGGC A+EDG  LA  + +A      +G   D A             L+
Sbjct: 373 DSVHAMQPNMGQGGCMAIEDGYQLALELDKAWKKSSETGTPVDVASS-----------LR 421

Query: 353 RYATERRWRSCELISMA 369
            Y   RR R   +  MA
Sbjct: 422 SYENSRRLRVAIIHGMA 438

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin.

Prunus armeniaca (taxid: 36596)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 26/326 (7%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           +I+I GAGI GL+ +L L R G+RS+VLE +  L   G  I L  NA+ ALDA+GI +  
Sbjct: 4   NILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIGEVA 63

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTK-----GNRGGHEVRSVKRSLLMEALERELPS 120
           RQ  + +  ++    ++ +  + +    +     GN      R+    LL+EA  +   +
Sbjct: 64  RQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHK---T 120

Query: 121 G--TIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV-NSVVAKWLGFKKPAFAG 177
           G   +R +++VV  E         L DG+     VL+G DG+ ++V  K +G   P  +G
Sbjct: 121 GLVEVRTNAEVVDYENFPDRVEAILHDGSCINGAVLVGADGLWSNVRQKVIGDGDPRVSG 180

Query: 178 RSDIRGCTDF-----KLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232
            +  R          +LR  +      + G+G      P     V+       S   +  
Sbjct: 181 HTTYRSVIPAEDMPEELRWNMS---TAWAGEGCHMVHYPLKGGKVFNLVLTSNSGASEPE 237

Query: 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVA 292
            G P  T + V  K   +  +  +++         V   R   P      N   G V + 
Sbjct: 238 AGVPVTTDE-VFEKFKTMKRRPTSLIHKGNNWKRWVLCDRDPLP------NWVDGRVTLL 290

Query: 293 GDAFHPMTPDIGQGGCAALEDGIILA 318
           GDA HPM   + QG   A+ED + LA
Sbjct: 291 GDAAHPMMQYMAQGASMAIEDAVCLA 316

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 25/326 (7%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTGF---AITLWTNAWRALDAVGIS 62
           +++ G GI GL  +LA  + G   LV E    ++R  G     I + +NA  AL+A+ + 
Sbjct: 82  VLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDMD 141

Query: 63  ---DSLRQQHI---QLQGMV--VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL 114
              D +    I   ++ G+V  V+ +  C+  +   F     RG    R + R  L + L
Sbjct: 142 VAEDIMNAGCITGQRINGLVDGVSGNWYCKFDT---FTPAVERGLPVTRVISRMTLQQNL 198

Query: 115 ERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKP 173
            R +    I   S VV+ E+ G    V L DG  +   +L+G DG+ S V     G    
Sbjct: 199 ARAVGEDIIMNESNVVNFEDDGEKVTVTLEDGQQYTGDLLVGADGIRSKVRTNLFGPSDV 258

Query: 174 AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF-FNWCPSNQDKEL 232
            ++G +   G  DF         ++ FLG    +         + W+ F+  P+    + 
Sbjct: 259 TYSGYTCYTGIADFVPADIETVGYRVFLGHKQYFVSSDVGGGKMQWYAFHNEPAGGVDDP 318

Query: 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVA 292
            G   +  +     C ++ + + A  E    D+IL   + Y  P    WG   KG V + 
Sbjct: 319 NGKKARLLKIFEGWCDNVIDLLVATDE----DAILRRDI-YDRPPTFSWG---KGRVTLL 370

Query: 293 GDAFHPMTPDIGQGGCAALEDGIILA 318
           GD+ H M P++GQGGC A+ED   LA
Sbjct: 371 GDSVHAMQPNLGQGGCMAIEDSYQLA 396

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 13/315 (4%)

Query: 14  IAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQ 73
           I GL+ ++ L   GI   V E+ + ++  G AI++W N  + +  +G+ D +      + 
Sbjct: 10  IGGLSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIESYGGPMH 69

Query: 74  GMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVE 133
            +     +  +  ++ S      R G     V    L   +        +++  +V   E
Sbjct: 70  FLAYKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREMLDFWGRDAVQFGKRVTRCE 129

Query: 134 ESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPA--FAGRSDIRGCTDFKLRH 191
           E      V   DG++ +   LI  DG +S +  ++    P   +AG  +  G  +     
Sbjct: 130 EHADGVRVWFTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGLVEIDEAI 189

Query: 192 GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEG-NPDKTKQFVLSKCHD 249
               ++  F+G+G R   +P +D   Y+FF+   P+   ++      D ++ F  S    
Sbjct: 190 APGNQWTTFVGEGKRVSLMPVSDGRFYFFFDVPLPAGLAEDRSTLRADLSRYF--SGWAP 247

Query: 250 LPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA 309
             +++ A ++    + I +  +    P+E     + +G V + GDA H  TPDIGQGGCA
Sbjct: 248 QVQKLIAALDPQTTNRIEIHDIE---PFE----RLVRGKVALLGDAGHSTTPDIGQGGCA 300

Query: 310 ALEDGIILARCIAEA 324
           ALED ++L     E+
Sbjct: 301 ALEDAVVLGDLFRES 315

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 139/324 (42%), Gaps = 21/324 (6%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTG---FAITLWTNAWRALDAVGIS 62
           +++ G GI GL  +LA  R G    V E   S +R  G     I + +NA  AL+A+ +S
Sbjct: 80  VLVAGGGIGGLVLALAARRKGYEVTVFERDMSAVRGEGQYRGPIQIQSNALAALEAIDMS 139

Query: 63  ---DSLRQQHI---QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
              + +R+  +   ++ G+V   S S     + +F     RG    R + R  L + L R
Sbjct: 140 VAEEVMREGCVTGDRINGLVDGISGSWYIKFD-TFTPAAERGLPVTRVISRMTLQQILAR 198

Query: 117 ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL-GFKKPAF 175
            +    I   S VV   + G      L DG  F+  +L+G DG+ S V K L G  +  +
Sbjct: 199 AVGDDAILNDSHVVDFIDDGNKVTAILEDGRKFEGDLLVGADGIWSKVRKVLFGQSEATY 258

Query: 176 AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF-FNWCPSNQDKELEG 234
           +  +   G  DF         ++ FLG    +         + W+ F+  P+       G
Sbjct: 259 SEYTCYTGIADFVPPDIDTVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGTDPENG 318

Query: 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
              +  +     C ++ + + A  E   L   +     Y  P    WG   KG V + GD
Sbjct: 319 KNKRLLEIFNGWCDNVVDLINATDEEAILRRDI-----YDRPPTFNWG---KGRVTLLGD 370

Query: 295 AFHPMTPDIGQGGCAALEDGIILA 318
           + H M P++GQGGC A+EDG  LA
Sbjct: 371 SVHAMQPNLGQGGCMAIEDGYQLA 394

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, seed development and dormancy.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 142/327 (43%), Gaps = 27/327 (8%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTG---FAITLWTNAWRALDAVGIS 62
           +++ G GI GL  +LA  + G   LV E    ++R  G     I + +NA  AL+A+ + 
Sbjct: 88  VLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDLD 147

Query: 63  ---DSLRQQHI---QLQGMV--VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL 114
              D +    I   ++ G+V  ++ +  C+  +   F     RG    R + R  L + L
Sbjct: 148 VAEDIMNAGCITGQRINGLVDGISGNWYCKFDT---FTPAVERGLPVTRVISRMTLQQIL 204

Query: 115 ERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKP 173
            R +    I   S VV  E+ G    V L +G  F   +L+G DG+ S V     G  + 
Sbjct: 205 ARAVGEEIIMNESNVVDFEDDGEKVTVVLENGQRFTGDLLVGADGIRSKVRTNLFGPSEA 264

Query: 174 AFAGRSDIRGCTDFKLRHGLEPKFQQFLG--KGFRYGFLPCNDQTVYWFFNWCPSNQDKE 231
            ++G +   G  DF         ++ FLG  + F    +       Y F+N      D  
Sbjct: 265 TYSGYTCYTGIADFVPADIDTVGYRVFLGHKQYFVSSDVGGGKMQWYAFYNEPAGGADA- 323

Query: 232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCV 291
               P+  K+ +L       + V  ++  T  D+IL   + Y  P    WG   +G V +
Sbjct: 324 ----PNGKKERLLKIFGGWCDNVIDLLVATDEDAILRRDI-YDRPPTFSWG---RGRVTL 375

Query: 292 AGDAFHPMTPDIGQGGCAALEDGIILA 318
            GD+ H M P++GQGGC A+ED   LA
Sbjct: 376 LGDSVHAMQPNLGQGGCMAIEDSYQLA 402

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 133/322 (41%), Gaps = 50/322 (15%)

Query: 27  GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ----------HIQLQGMV 76
           G    V E + S    G  I +  N  + L  +GI D+L +Q          H Q  G V
Sbjct: 27  GFNVRVYEQAPSFSRLGAGIHVGPNVMKILRRIGIEDALNEQGSHPDYWYSRHWQ-TGDV 85

Query: 77  VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG 136
           +A      P  + + K  G       R    +LL+EA    LP   + Y   +  VE+ G
Sbjct: 86  LAQI----PLGDYAVKEYGASYLTVHRGDFHALLVEA----LPDSVMAYGKFLTKVEDRG 137

Query: 137 LFKLVNLADGAVFKTKVLIGCDGVNS-VVAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLE 194
              +++ ADG   +  ++IG DGVNS +  + LG + P +AG    R      +++ G+ 
Sbjct: 138 NVVVMHFADGTTEEADIVIGPDGVNSRIREELLGPELPKYAGYLAHRAVFPTPEVKAGML 197

Query: 195 P-----KFQQFLGKGFRYGFLPCNDQTVY--------WFFNWCPSNQDKELEGNPDKTKQ 241
           P     K+         Y      D+  Y        W  N      D+ LE + ++ ++
Sbjct: 198 PFDACVKWWSDDRHMMTYFVTGKADELYYVTGVPVEKWDLN------DRWLESSKEEMRE 251

Query: 242 FVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTP 301
                   +   + A VE T    +   PL        LW   S+G + + GDA HPM P
Sbjct: 252 AFSGWHPTVQALIDATVEVTKWSLLERDPLP-------LW---SRGRLVLLGDACHPMKP 301

Query: 302 DIGQGGCAALEDGIILARCIAE 323
            + QG   A+EDG +LARC+ E
Sbjct: 302 HMAQGAAMAIEDGAMLARCLKE 323

Catalyzes the oxidative decarboxylation of 6-hydroxynicotinic acid to 2,5-dihydroxypyridine. Uses NADH in preference to NADPH as an electron donor.

Pseudomonas fluorescens (taxid: 294)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
224147350	405	predicted protein [Populus trichocarpa]	0.977	0.987	0.659	1e-145
224080640	405	predicted protein [Populus trichocarpa]	0.977	0.987	0.659	1e-145
359475016	409	PREDICTED: LOW QUALITY PROTEIN: 3-hydrox	0.990	0.990	0.617	1e-144
356536384	412	PREDICTED: 6-hydroxynicotinate 3-monooxy	0.968	0.961	0.599	1e-137
388492786	416	unknown [Lotus japonicus]	0.975	0.959	0.568	1e-137
356575446	412	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.970	0.963	0.597	1e-135
449507022	409	PREDICTED: FAD-dependent urate hydroxyla	0.987	0.987	0.576	1e-133
356534423	418	PREDICTED: zeaxanthin epoxidase, chlorop	0.982	0.961	0.564	1e-133
359492090	412	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.990	0.983	0.586	1e-132
449454358	409	PREDICTED: FAD-dependent urate hydroxyla	0.987	0.987	0.573	1e-132

>gi|224147350|ref|XP_002336457.1| predicted protein [Populus trichocarpa] gi|222835068|gb|EEE73517.1| predicted protein [Populus trichocarpa]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/414 (65%), Positives = 318/414 (76%), Gaps = 14/414 (3%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           ME  E++VIVGAGIAGLTTSL LHRLGIRSLVLESS  LRVTGFA T WTNAWRALDAVG
Sbjct: 1   MELVEEVVIVGAGIAGLTTSLGLHRLGIRSLVLESSAGLRVTGFAFTTWTNAWRALDAVG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQ-PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP 119
           I  SLRQQH  L+G + +   SC  P S ++F      G HEVR V+R LL+EALE+ELP
Sbjct: 61  IGHSLRQQHGFLEGYITSRLTSCHHPISLVTF------GDHEVRCVRRKLLLEALEKELP 114

Query: 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRS 179
            GTIRYSSKVVS+EESG  KLV+LAD  + KTKVLIGCDGVNSVVA+++GFKKPAFAGRS
Sbjct: 115 DGTIRYSSKVVSIEESGYLKLVHLADDTIIKTKVLIGCDGVNSVVARFIGFKKPAFAGRS 174

Query: 180 DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKT 239
            IRG  DFK+ HG   KF    GKG R GFLPC+D T+YWFF + P+ QDKELE NP + 
Sbjct: 175 AIRGYADFKVNHGFGSKFLLLFGKGVRSGFLPCDDTTIYWFFTYIPTGQDKELEDNPTEM 234

Query: 240 KQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPM 299
           KQFVLSK  ++P+  +  VE T LDSI  SPLR+R+PWEVLWGNISKGNV VAGDA HPM
Sbjct: 235 KQFVLSKLGNVPDHARTSVEITELDSITSSPLRFRHPWEVLWGNISKGNVSVAGDALHPM 294

Query: 300 TPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERR 359
           TPDIGQGGCAALEDG++LARC+AEA  ++ +   K+K   ++EE+KR E+GLK+YA ERR
Sbjct: 295 TPDIGQGGCAALEDGVVLARCLAEALKKELNVEGKEK---EREEYKRVEMGLKKYAAERR 351

Query: 360 WRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           WRS ELIS AYIVG     DGKI+N LRD   +  L  L++K  +FDCGKL IS
Sbjct: 352 WRSFELISTAYIVGAIQQGDGKIMNILRDAFLAKFLAGLLLKKADFDCGKLNIS 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080640|ref|XP_002306191.1| predicted protein [Populus trichocarpa] gi|222849155|gb|EEE86702.1| predicted protein [Populus trichocarpa]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/414 (65%), Positives = 318/414 (76%), Gaps = 14/414 (3%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           ME  E++VIVGAGIAGLTTSL LHRLGIRSLVLESS  LRVTGFA T WTNAWRALDAVG
Sbjct: 1   MELVEEVVIVGAGIAGLTTSLGLHRLGIRSLVLESSAGLRVTGFAFTTWTNAWRALDAVG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQ-PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP 119
           I  SLRQQH  L+G + +   SC  P S ++F      G HEVR V+R LL+EALE+ELP
Sbjct: 61  IGHSLRQQHGFLEGYITSRLTSCHHPISLVTF------GDHEVRCVRRKLLLEALEKELP 114

Query: 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRS 179
            GTIRYSSKVVS+EESG  KLV+LAD  + KTKVLIGCDGVNSVVA+++GFKKPAFAGRS
Sbjct: 115 DGTIRYSSKVVSIEESGYLKLVHLADDTIIKTKVLIGCDGVNSVVARFIGFKKPAFAGRS 174

Query: 180 DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKT 239
            IRG  DFK+ HG   KF    GKG R GFLPC+D T+YWFF + P+ QDKELE NP + 
Sbjct: 175 AIRGYADFKVNHGFGSKFLLLFGKGVRSGFLPCDDTTIYWFFTYIPTGQDKELEDNPTEM 234

Query: 240 KQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPM 299
           KQFVLSK  ++P+  +  VE T LDSI  SPLR+R+PWEVLWGNISKGNV VAGDA HPM
Sbjct: 235 KQFVLSKLGNVPDHARTSVEITELDSITSSPLRFRHPWEVLWGNISKGNVSVAGDALHPM 294

Query: 300 TPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERR 359
           TPDIGQGGCAALEDG++LARC+AEA  ++ +   K+K   ++EE+KR E+GLK+YA ERR
Sbjct: 295 TPDIGQGGCAALEDGVVLARCLAEALKKELNVEGKEK---EREEYKRVEMGLKKYAAERR 351

Query: 360 WRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           WRS ELIS AYIVG     DGKI+  LRD I +  L  L++K  +FDCGKL IS
Sbjct: 352 WRSFELISTAYIVGAIQQGDGKIMKILRDAIMAKFLAGLLLKKADFDCGKLNIS 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475016|ref|XP_003631569.1| PREDICTED: LOW QUALITY PROTEIN: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/413 (61%), Positives = 321/413 (77%), Gaps = 8/413 (1%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           M+  EDIVIVGAGIAGLTT+L LHRLG+RSLVLESS SLRVTGFA   WTNAWRALDA+G
Sbjct: 1   MDAVEDIVIVGAGIAGLTTALGLHRLGLRSLVLESSHSLRVTGFAFITWTNAWRALDAIG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           + D LRQ H QL G+  AS+VS    SEISFK KG  G H++R ++R +L+EAL +ELP+
Sbjct: 61  VGDYLRQHHNQLYGLQSASTVSGLQTSEISFKAKGKNGEHDIRCLQRKVLLEALLKELPN 120

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
           GTIRYSSKVVSVEESG  KLV+LADG++ KTKVLIGCDGVNS+VAKW G KKPAF  R  
Sbjct: 121 GTIRYSSKVVSVEESGYLKLVHLADGSILKTKVLIGCDGVNSMVAKWXGLKKPAFTRRYA 180

Query: 181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            R    FK  HG EPKF QF GKG R GF+PC+D+TVYWF  + PS+Q+K++E +P K K
Sbjct: 181 FRAYAYFKSGHGFEPKFLQFFGKGVRSGFIPCDDKTVYWFMAFTPSSQEKQMENDPAKMK 240

Query: 241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
           QF LS   ++P+QVKA+VE+T +DSI ++ +R+RYPWE+LWGNISK NVCVAGDA HPMT
Sbjct: 241 QFALSNLGNVPDQVKAVVESTEMDSISLAQMRFRYPWELLWGNISKDNVCVAGDALHPMT 300

Query: 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
           PD+GQG C+ALED ++LARC+AEA ++KP    ++K  E+ +  K   +GL++YA ERR+
Sbjct: 301 PDLGQGACSALEDTVVLARCLAEALSKKPKNKAEEKEEEEFKRIK---MGLEKYAKERRY 357

Query: 361 RSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           R  +LI+ +Y+VG+    DGK++NF+RDKI S LL  + +K  +FDCGKL +S
Sbjct: 358 RGIDLITSSYLVGFIQQSDGKMLNFIRDKI-SALLAGVPLKKADFDCGKLSMS 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536384|ref|XP_003536718.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/407 (59%), Positives = 306/407 (75%), Gaps = 11/407 (2%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           EDIVIVGAGIAGLTTSL LH+LGIRSLVLESS++LRVTGFA+++W NAW+ALD VG+ D 
Sbjct: 7   EDIVIVGAGIAGLTTSLGLHKLGIRSLVLESSDTLRVTGFALSIWENAWKALDTVGVGDF 66

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRG-GHEVRSVKRSLLMEALERELPSGTI 123
           LR QH+QL G+V  S V+ Q  S++ F   GN+    E+R VKR LL+EAL  ELPS TI
Sbjct: 67  LRHQHLQLNGIVTTSLVTGQQTSDMPFTETGNQQRNREIRCVKRKLLLEALANELPSDTI 126

Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRG 183
           RY SKVV++EESG +K+V+LADG   KTKVLIGCDGVNS+VAKWLGFK  +F GR  IRG
Sbjct: 127 RYLSKVVAIEESGFYKIVHLADGTTIKTKVLIGCDGVNSIVAKWLGFKNASFTGRYAIRG 186

Query: 184 CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFV 243
           C + +  HGLEP+F QF GKGFR G +PC+   VYWFF W P+NQDKELE NP K K+ V
Sbjct: 187 CAEVQSNHGLEPRFMQFFGKGFRAGVIPCDGNVVYWFFTWTPNNQDKELEENPAKLKEHV 246

Query: 244 LSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDI 303
           L+K  ++P  V+  +E T +D+  ++PLRYR+PWE+++GNISKGN+CV GDAFHPMTPD+
Sbjct: 247 LNKLENMPSDVRYYIEKTEIDAFQLAPLRYRHPWELMFGNISKGNICVGGDAFHPMTPDL 306

Query: 304 GQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSC 363
           GQGGC ALEDGI+LARC+A A ++      K+K  ED  +FKR E  LK+YA ERRWRS 
Sbjct: 307 GQGGCCALEDGIVLARCLAAAFSKH----IKEKDEED--QFKRIEGSLKKYAKERRWRSI 360

Query: 364 ELISMAYIVG----YDGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
           ++I+ AY+VG     + K++ FLRD I +  L   + K   +DCGKL
Sbjct: 361 DVIATAYMVGSIQQAESKLVTFLRDNILAAFLASQLFKKSGYDCGKL 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492786|gb|AFK34459.1| unknown [Lotus japonicus]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 304/410 (74%), Gaps = 11/410 (2%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           EDI+IVGAGIAGLTTSL LHRLG+RSLVLESS++LR TGFA+  W NAW+AL+AVG+   
Sbjct: 7   EDILIVGAGIAGLTTSLGLHRLGVRSLVLESSDTLRATGFALATWKNAWKALEAVGVGTI 66

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIR 124
           LR +H+Q+ G+ + S ++ QP S +SFK  G  G  EVR V+R L++EAL  ELPSGTIR
Sbjct: 67  LRDRHLQVNGITITSLITGQPTSTVSFKDNGKHGSCEVRCVRRKLMLEALANELPSGTIR 126

Query: 125 YSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGC 184
           Y SKVV++EESG +K+++LADG + KTKVLIGCDGVNS+VAKWLGFK+ +F GR  IRGC
Sbjct: 127 YLSKVVAIEESGFYKILHLADGTIIKTKVLIGCDGVNSMVAKWLGFKEASFTGRQAIRGC 186

Query: 185 TDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP----DKTK 240
            + +  HG +P  +QF G+GFR G +PC+ +T+YWFF W P+ Q +ELE NP     K K
Sbjct: 187 VELESNHGFDPMLKQFFGQGFRAGVVPCDQETIYWFFTWTPTTQGEELEENPAKLKTKLK 246

Query: 241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
           QFVL+K   +P  V+  +E T LD    +PLRYR PWE++ GNISKGNVCVAGDA HPMT
Sbjct: 247 QFVLNKLEKMPSDVRCFIEKTELDCFHSAPLRYRQPWELMLGNISKGNVCVAGDALHPMT 306

Query: 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
           PD+GQGGC ALEDG++LARC+A+A +EK      ++    +E++KR E  LK+YA ER+W
Sbjct: 307 PDLGQGGCCALEDGVVLARCLAKAFSEKSKEKKGEED---EEQYKRIEESLKKYADERKW 363

Query: 361 RSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
           RS +LIS AY+ G+    + K + FLRDK+ ++ L  +++K   FDCG L
Sbjct: 364 RSIDLISTAYMAGFVQQANSKWVTFLRDKVLAIFLADILLKKANFDCGTL 413

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575446|ref|XP_003555852.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/407 (59%), Positives = 305/407 (74%), Gaps = 10/407 (2%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           EDIVIVGAGIAGL+TSL LHRLGIRSLVLESS+SLR+TGFA+++W NAW+ALDAVG+ D 
Sbjct: 8   EDIVIVGAGIAGLSTSLGLHRLGIRSLVLESSDSLRITGFALSIWENAWKALDAVGVGDF 67

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRG-GHEVRSVKRSLLMEALERELPSGTI 123
           LRQQH QL  +V  S V+ Q  S +SF   GN+    E+R VKR LL+EAL  ELPSGTI
Sbjct: 68  LRQQHPQLNRVVTTSLVTGQQTSVMSFTETGNQQRDREIRCVKRKLLLEALANELPSGTI 127

Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRG 183
           RY SKVV++EESG +K+++LADG   KTKVLIGCDGVNSVVAKWLGFK  +F GR  IRG
Sbjct: 128 RYLSKVVALEESGFYKILHLADGTTIKTKVLIGCDGVNSVVAKWLGFKNASFTGRYSIRG 187

Query: 184 CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFV 243
           C + +  HGLEP+  QF GKGFR G +PC+++ VYWFF W P + DKEL+ NP K K++V
Sbjct: 188 CAEVQSNHGLEPRTMQFFGKGFRAGVIPCDEKAVYWFFTWTPKSHDKELDDNPAKLKEYV 247

Query: 244 LSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDI 303
           L+K   +P  ++  +E T LD IL+ PLRYR+PWE+++GNISKGNVCV GDA HPMTPD+
Sbjct: 248 LNKLEKMPSDIRYYIEKTELDVILLVPLRYRHPWELMFGNISKGNVCVGGDALHPMTPDL 307

Query: 304 GQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSC 363
           GQGGC ALEDG++LAR + EA ++      K+K  ED ++FKR E  LK+YA ERRWRS 
Sbjct: 308 GQGGCCALEDGVVLARFLGEAFSKH----IKEKDEED-DQFKRIEESLKKYAKERRWRSI 362

Query: 364 ELISMAYIVG----YDGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
           ++I+ AY+VG     + K++ FLRD I +  L    +K   +DCGKL
Sbjct: 363 DVIATAYMVGSIQQAESKLVTFLRDNILAAFLASQYLKKSGYDCGKL 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507022|ref|XP_004162912.1| PREDICTED: FAD-dependent urate hydroxylase-like [Cucumis sativus]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/413 (57%), Positives = 297/413 (71%), Gaps = 9/413 (2%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           ME   D++IVGAGI+GLTT+L LHRLGIRSLVLESS+ LRVTG+A++LWTN W+ALDAVG
Sbjct: 1   MENVVDVLIVGAGISGLTTALGLHRLGIRSLVLESSDDLRVTGYALSLWTNGWKALDAVG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           I DSLRQ H QL G++  S +S    SE+ F      G   VR V+R  L+E L + LPS
Sbjct: 61  IGDSLRQNHDQLDGIITTSMISGDKTSELLFPAPEEGG---VRCVRRKFLLECLAKALPS 117

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
           GTI++SSKVV++EESGL KLV+L DG   KTKVLIGCDGV SVVAKWLGFK PAF GR  
Sbjct: 118 GTIKFSSKVVAIEESGLLKLVHLVDGTSIKTKVLIGCDGVKSVVAKWLGFKAPAFTGRCA 177

Query: 181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
           +RGC      H  E K  Q+ G+G R G +PC+D+T+YWFF W PS + KE++ NP K K
Sbjct: 178 VRGCLQLDSNHYFERKMSQYAGEGVRAGIIPCDDKTLYWFFTWTPSAEVKEMKRNPVKLK 237

Query: 241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
           Q VLS   ++PE  + ++E T +     + L+YR PWE++ GNI KGNVCVAGDA HPMT
Sbjct: 238 QLVLSMLGEIPEAARVVIEETDVSCFQPAALQYRSPWELMLGNIVKGNVCVAGDALHPMT 297

Query: 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
           PD+GQGGCAALEDG+ILARC+AEA  +KPS    +KA  ++E+ K+ E+GLK+YA ER+W
Sbjct: 298 PDLGQGGCAALEDGVILARCVAEALLKKPSSQVGEKA--EREQQKQVEMGLKKYAAERKW 355

Query: 361 RSCELISMAYIVG----YDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           RS ELIS AY+VG      G    F+RDKI S  L  L+++  +FDCGKL  S
Sbjct: 356 RSIELISTAYMVGRMQQSSGVFAKFIRDKILSKFLVGLLLRNAKFDCGKLTPS 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534423|ref|XP_003535754.1| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/411 (56%), Positives = 293/411 (71%), Gaps = 9/411 (2%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           EDIVIVGAGIAGL TSLALHRLG+ SLVLE S++LRVTGFA+T WTNAW+ALDA+G+   
Sbjct: 7   EDIVIVGAGIAGLATSLALHRLGVPSLVLEYSDTLRVTGFALTTWTNAWKALDALGVGTI 66

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIR 124
           LR QH+QL+  V  S +  Q  S +SF+  G  G  EVR V+R L++EA+  ELPSGTIR
Sbjct: 67  LRHQHVQLKENVTTSLILGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANELPSGTIR 126

Query: 125 YSSKVVSVEESGL--FKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIR 182
           + SKVV++EESG    K+V L DG   KTKVLIGCDG+NSVVAKWLGFK+ +F GR  IR
Sbjct: 127 FLSKVVAIEESGFSKIKIVRLDDGTTIKTKVLIGCDGINSVVAKWLGFKEASFTGRYVIR 186

Query: 183 GCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQF 242
           G       HGLEPKF  + GKGFR G +PC+D TVYWF  W P++++KEL  NP K KQ 
Sbjct: 187 GYKKLMNNHGLEPKFMHYFGKGFRSGVMPCDDNTVYWFLTWTPTSEEKELAKNPSKMKQL 246

Query: 243 VLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD 302
           VL K   +P  +K  +E T    IL SPL+YR+ WE++ G ISKGNVCV GDAFHPM PD
Sbjct: 247 VLRKVEKMPSDIKTFIEKTETKDILTSPLKYRHEWELMLGKISKGNVCVVGDAFHPMAPD 306

Query: 303 IGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGED---KEEFKRNEIGLKRYATERR 359
           +GQGGC ALEDGIILAR +AEA T+K       + GE+   KE++K+ E  L++YA ERR
Sbjct: 307 LGQGGCCALEDGIILARHLAEAFTKKTGKHVAKEMGEEGKSKEQYKKIEASLRKYAKERR 366

Query: 360 WRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
           WR+ ++   +Y++G+    D K+++  RDK+F   L  L++K  +FDCGKL
Sbjct: 367 WRNIDISVTSYVLGFVLQGDLKLVSHFRDKLFPAFLAELLLKKSDFDCGKL 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492090|ref|XP_002284737.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/416 (58%), Positives = 311/416 (74%), Gaps = 11/416 (2%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           ME +EDI+IVGAGI GLTT L LHRLG+RSLVLESS+SLRVTGFA+T W NAWRALDAVG
Sbjct: 1   MEMNEDIIIVGAGIGGLTTCLGLHRLGLRSLVLESSDSLRVTGFALTTWKNAWRALDAVG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           + DS+RQQH+Q+QG+ V S++S QP SEISF   G  G HE+R V+R +L+E LERELP 
Sbjct: 61  VGDSIRQQHMQIQGLQVFSTISGQPTSEISFG--GKWGIHEIRCVRRKVLLETLERELPR 118

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
           G+IRYSSKVVS++ESG +K V+LADG+V KTKVLIGCDGVNS+VA WLG  KP  +GRS 
Sbjct: 119 GSIRYSSKVVSIQESGHYKTVHLADGSVLKTKVLIGCDGVNSLVANWLGLDKPVDSGRSA 178

Query: 181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ---DKELEGNPD 237
           +RG  +F   HGLEPKF+Q  G G R+G +PC   T+YWF  + PS      +E++ NP 
Sbjct: 179 VRGLVEFPDGHGLEPKFRQHFGNGVRHGVIPCGPTTLYWFLTFAPSVHGVDTEEMDQNPA 238

Query: 238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH 297
           K K FVLSK   +P+ ++ + E T LD +  SPL++R PW+V  G+I KGNVCVAGDA H
Sbjct: 239 KMKDFVLSKLGKVPQHIENVFEKTALDCMSCSPLKFRLPWKVATGHIYKGNVCVAGDALH 298

Query: 298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATE 357
           PMTPDIGQGGC+A+EDG++LARC+ E    KP+   +D  G+D+E +KR   GL++YA E
Sbjct: 299 PMTPDIGQGGCSAMEDGVVLARCLGEVLLRKPT--REDGEGKDEECYKRISEGLEKYAKE 356

Query: 358 RRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           RRWRS +LI+ AY+VG     D K++ FLR+K  S  L  L +++ +FDCG+L IS
Sbjct: 357 RRWRSFKLITTAYVVGLIQESDWKVVRFLREKFLSGFLANLFLRMGDFDCGQLSIS 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454358|ref|XP_004144922.1| PREDICTED: FAD-dependent urate hydroxylase-like [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/413 (57%), Positives = 296/413 (71%), Gaps = 9/413 (2%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           ME   D++IVGAGI+GLTT+L LHRLGIRSLVLESS+ LRVTG+A++LWTN W+ALDAVG
Sbjct: 1   MENVVDVLIVGAGISGLTTALGLHRLGIRSLVLESSDDLRVTGYALSLWTNGWKALDAVG 60

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           I DSLRQ H QL G++  S +S    SE+ F      G   VR V+R  L+E L + LPS
Sbjct: 61  IGDSLRQNHDQLDGIITTSMISGDKTSELLFPAPEEGG---VRCVRRKFLLECLAKALPS 117

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
           GTI++SSKVV++EESGL KLV+L DG   KTKVLIGCDGV SVVAKWLGFK PAF GR  
Sbjct: 118 GTIKFSSKVVAIEESGLLKLVHLVDGTSIKTKVLIGCDGVKSVVAKWLGFKAPAFTGRCA 177

Query: 181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
           +RGC      H  E K  Q+ G+G R G +PC+ +T+YWFF W PS + KE++ NP K K
Sbjct: 178 VRGCLQLDSNHYFERKMSQYAGEGVRAGIIPCDYKTLYWFFTWTPSAEVKEMKRNPVKLK 237

Query: 241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
           Q VLS   ++PE  + ++E T +     + L+YR PWE++ GNI KGNVCVAGDA HPMT
Sbjct: 238 QLVLSMLGEIPEAARVVIEETDVSCFQPAALQYRSPWELMLGNIVKGNVCVAGDALHPMT 297

Query: 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
           PD+GQGGCAALEDG+ILARC+AEA  +KPS    +KA  ++E+ K+ E+GLK+YA ER+W
Sbjct: 298 PDLGQGGCAALEDGVILARCVAEALLKKPSSQEGEKA--EREQQKQVEMGLKKYAAERKW 355

Query: 361 RSCELISMAYIVG----YDGKIINFLRDKIFSVLLGRLMMKILEFDCGKLCIS 409
           RS ELIS AY+VG      G    F+RDKI S  L  L+++  +FDCGKL  S
Sbjct: 356 RSIELISTAYMVGRMQQSSGVFAKFIRDKILSKFLVGLLLRNAKFDCGKLTPS 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.973	0.977	0.518	7.2e-107
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.965	0.972	0.502	6e-103
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.814	0.779	0.368	1.4e-55
TAIR|locus:2058723	439	CTF2A "AT2G35660" [Arabidopsis	0.772	0.719	0.382	3.7e-55
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.948	0.919	0.356	7e-54
TAIR|locus:504955430	271	AT4G15765 "AT4G15765" [Arabido	0.481	0.726	0.344	1e-32
UNIPROTKB|A6T923	384	hpxO "FAD-dependent urate hydr	0.733	0.781	0.250	5.9e-19
UNIPROTKB|B6D1N4	384	hpxO "FAD-dependent urate hydr	0.733	0.781	0.250	5.9e-19
UNIPROTKB|B5B0J6	384	hpxO "FAD-dependent urate hydr	0.745	0.794	0.240	1.7e-16
UNIPROTKB|Q88FY2	382	nicC "6-hydroxynicotinate 3-mo	0.770	0.824	0.241	4.4e-15

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 214/413 (51%), Positives = 277/413 (67%)

Query:     1 MEED--EDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDA 58
             MEE+   DI+IVGAGI+GL+T++ LHRLGI             TGFA T W NAW+A++A
Sbjct:     1 MEEEGSPDIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEA 60

Query:    59 VGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL 118
             +G+S  +R  H +L+G VV +  +  P +E+ F        +E R V+R LL+EAL  EL
Sbjct:    61 LGVSQHIRSLHDRLEGWVVGTISAGTPPTEMLFPESEE---YESRCVQRKLLLEALAGEL 117

Query:   119 PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR 178
             P  TIR+SSKVV +E SG +K V+L+DG + KTKVL+GCDGV SVV KWLGFK PA   R
Sbjct:   118 PEETIRFSSKVVHIELSGCYKKVHLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPATTAR 177

Query:   179 SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDK 238
               IRG T F   HG   +F QF G G R GF+PC+  TVYWF     ++ D+E   N + 
Sbjct:   178 LAIRGLTHFPEGHGFGKRFFQFYGDGVRSGFIPCDHNTVYWFLTHTSTDIDEET--NSEI 235

Query:   239 TKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP 298
              K+FVL+K  DLPE +K +VE T LDS+++S L+YR PWE+LW NI+K NVCVAGDA HP
Sbjct:   236 LKEFVLNKIKDLPENIKNVVETTDLDSMVMSQLKYRPPWELLWSNITKDNVCVAGDALHP 295

Query:   299 MTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEE-FKRNEIGLKRYATE 357
             MTPDIGQGGC+A+EDG+ILARC+ EA   K     K +  E++EE +KR E GLK+YA E
Sbjct:   296 MTPDIGQGGCSAMEDGVILARCLGEAIKAKS---LKGETEENEEEGYKRIEEGLKKYAGE 352

Query:   358 RRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
             R+WRS +LI+ AY VG+     GK +N  RD+  S  L R+++K   FDCG L
Sbjct:   353 RKWRSIDLITTAYTVGFIQQSRGKWMNMFRDRFLSSYLSRMLLKKSHFDCGSL 405

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 206/410 (50%), Positives = 270/410 (65%)

Query:     2 EEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGI 61
             E  +DI+IVGAGI+GL T+L LHRLGI             TGFA++L+ NAW+A++A+GI
Sbjct:     4 ESTQDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGI 63

Query:    62 SDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSG 121
             S  +R    + QG VV    +  P  E+ F        +EVR V+R LL++AL  ELP G
Sbjct:    64 SQHIRSLGDRFQGWVVRPISAGDPPKEMLFPESEE---YEVRCVQRKLLLDALAGELPQG 120

Query:   122 TIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDI 181
             TIR+SSK+V +E SG +K+V+L+DG + KTKVL+GCDGV SVV KWLGFK P    R  I
Sbjct:   121 TIRFSSKLVHIELSGHYKMVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRVAI 180

Query:   182 RGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQ 241
             RG   F+  H L  +F QF G G R GF+ C+  TVYWF     ++ DK+   N  K KQ
Sbjct:   181 RGIAHFQTGHELGRRFFQFYGNGVRSGFISCDQNTVYWFLTHTSTDLDKK---NHQKIKQ 237

Query:   242 FVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTP 301
             FVL+K  DLP+ +K+I+E T LDS++++PL YR PWE+LW NI+K NVCVAGDA HPMTP
Sbjct:   238 FVLTKIKDLPDNIKSILETTDLDSLVMNPLMYRPPWELLWANIAKDNVCVAGDALHPMTP 297

Query:   302 DIGQGGCAALEDGIILARCIAEASTEKP-SGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
             DIGQGGC+A+EDG+ILARC+ EA   K   G T+D    + E ++R E GLK+YA  R+W
Sbjct:   298 DIGQGGCSAMEDGVILARCLGEAMKAKNMKGETED----ENESYRRIEDGLKKYAGSRKW 353

Query:   361 RSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
             RS +LI+ +Y VG+     GK +   RDK  S  L  L +K   F+CG+L
Sbjct:   354 RSIDLITTSYTVGFIQQSRGKWMTLFRDKFMSSFLSWLRVKKSHFNCGRL 403

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 127/345 (36%), Positives = 190/345 (55%)

Query:     1 MEEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVG 60
             ++ +E +VIVG GI GL T++ALHRLGI              G ++TL  N WR LDA+ 
Sbjct:    39 VDREEKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAIS 98

Query:    61 ISDSLRQQHIQLQGMVVASSVSCQPASEI-SFKTKGNRGGHEVRSVKRSLLMEALERELP 119
             I   LR+Q +++QG+V+      +   E+ SFK K N    EVR V+R +L+E L  +LP
Sbjct:    99 IGPQLRKQFLEMQGVVLKK----EDGRELRSFKFKDNDQSQEVRGVERRVLLETLASQLP 154

Query:   120 SGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR 178
               TIR+SSK+ S++ +     L+ L DG  F   ++IGCDG+ S VA W+GF +P + G 
Sbjct:   155 PQTIRFSSKLESIQSNANGDTLLQLKDGTRFLANIVIGCDGIRSKVATWMGFSEPKYVGY 214

Query:   179 SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPD 237
                RG   F      + K     G+G R G++P +   VYWF  +  PS   + ++  P 
Sbjct:   215 CAFRGLGFFPNGQPFQQKVNYIFGRGLRAGYVPVSATKVYWFITFNSPSLGPQMMD--PA 272

Query:   238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH 297
               ++         PE ++ +++ TP ++I  +PL  R+ W  +  + SKG V + GDA+H
Sbjct:   273 ILRKEAKELVSTWPEDLQNLIDLTPDEAISRTPLADRWLWPGIAPSASKGRVVLVGDAWH 332

Query:   298 PMTPDIGQGGCAALEDGIILARCIAEA---STEKPSGVTKDKAGE 339
             PMTP++GQG C ALED ++LA  +A A    TE   G  +    E
Sbjct:   333 PMTPNLGQGACCALEDSVLLANKLASAINGGTESVEGAMESYRSE 377

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 125/327 (38%), Positives = 186/327 (56%)

Query:     2 EEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGI 61
             +++E +VIVGAGI GL T+++LHRLGI              G ++TL+ N WR LDA+ +
Sbjct:    42 DQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISV 101

Query:    62 SDSLRQQHIQLQGMVVASSVSCQPASEI-SFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
                LR Q ++++GMVV      +   E+ SFK K +    EVR+V+R +L+E L  +LP 
Sbjct:   102 GPQLRTQFLEIEGMVVKK----EDGRELRSFKFKDDDQSQEVRAVERRVLLETLASQLPP 157

Query:   121 GTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRS 179
              TIR+SSK+ S++ +     L+ L DG     +++IGCDG+ S VA W+GF +P + G  
Sbjct:   158 QTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHC 217

Query:   180 DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF--FNWCPSNQDKELEGNPD 237
               RG   +      + K     GKG R G++P +   VYWF  FN  PS   K  +  P 
Sbjct:   218 AYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFICFN-SPSLGPKITD--PA 274

Query:   238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH 297
               K+         PE ++ +++ TP ++I  +PL  R+ W  +    SKG V + GDA+H
Sbjct:   275 ILKKQAKELVSTWPEDLQNLIDLTPDETISRTPLVDRWLWPGIAPPASKGRVVLVGDAWH 334

Query:   298 PMTPDIGQGGCAALEDGIILARCIAEA 324
             PMTP++GQG C ALED ++LA  +A A
Sbjct:   335 PMTPNLGQGACCALEDSVVLANKLANA 361

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 147/412 (35%), Positives = 210/412 (50%)

Query:     3 EDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGIS 62
             E+  IVIVG GIAGL TS+ALHR GI              G  I   +N WRALD +G+ 
Sbjct:    27 EEIGIVIVGGGIAGLATSIALHRKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLGVG 86

Query:    63 DSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGT 122
             D LR     +     A ++  +   +  F +       E R +KR+ L+EAL   LP GT
Sbjct:    87 DRLRLNSSLIHK---ARTMLIENGKKREFVSNIV---DEARCIKRNDLVEALSDALPKGT 140

Query:   123 IRYSSKVVSVEE--SGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFK-KPAFAGRS 179
             IR+ S +VS+E+  + LF +V+LA+G   K KVLIGCDG NS+V+ +L    K AFA R+
Sbjct:   141 IRFGSHIVSIEQDKTTLFPVVHLANGNSIKAKVLIGCDGANSIVSDYLQLNPKKAFACRA 200

Query:   180 DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKT 239
              +RG T +   HG   +  +        G LP  D  V+WF       QD    G   ++
Sbjct:   201 -VRGFTKYPNGHGFPQEVLRIKQGNVLIGRLPLTDNQVFWFL---VHMQDNNHNGKDQES 256

Query:   240 KQFVLSK-CHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP 298
                +  K   DL E  K +V+   ++S+ ++ LRYR P E++ G   +G V VAGDA H 
Sbjct:   257 IANLCRKWADDLSEDWKEMVKICNVESLTLTHLRYRAPSEIMLGKFRRGTVTVAGDAMHV 316

Query:   299 MTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATER 358
             M P + QGG AALED ++LARC+A         + KD + ++ EE       +  Y  ER
Sbjct:   317 MGPFLAQGGSAALEDAVVLARCLARKVGPDHGDLLKDCSMKNIEE------AIDEYVDER 370

Query:   359 RWRSCELISMAYIVGYD----GKIINFLRDKIFSVLLGRLMMKILEFDCGKL 406
             R R   L    Y+ G       K++  +   +  +L GR  ++   +DCG+L
Sbjct:   371 RMRLLGLSVQTYLTGRSLQTSSKVLRLMFIALLLLLFGRDQIRHTRYDCGRL 422

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:504955430 AT4G15765 "AT4G15765" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 74/215 (34%), Positives = 107/215 (49%)

Query:   101 EVRSVKRSLLMEALERELPSGTIRYSSKVVSV--EESGLFKLVNLADGAVFKTKVLIGCD 158
             EVR V R+ L+ AL   LP GT+R    ++SV  +E+  F +V+          VLIGCD
Sbjct:    69 EVRGVLRNDLVRALAHALPLGTLRLGCHILSVKLDETKSFPIVH----------VLIGCD 118

Query:   159 GVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVY 218
             G NSVV+++LG       G   IRG T++   HG   +F +        G LP   + V+
Sbjct:   119 GSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPITHKLVF 178

Query:   219 WF--FNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYP 276
             WF     CP  QD     N +   +  L+   +  E+ K +V+N  +DS+ ++ LRYR P
Sbjct:   179 WFVVLRNCP--QDSNFLKNQEDIARLALASVREFSEEWKEMVKNCDMDSLYINRLRYRAP 236

Query:   277 WEVLWGNISKGNVCVAGDAFHPMTPDIGQG--GCA 309
             W+VL G   +G V V    + P  P +     GCA
Sbjct:   237 WDVLSGKFRRGTVTVGRRQYAPNGPILRTRMFGCA 271

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)]

 Score = 246 (91.7 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 79/315 (25%), Positives = 141/315 (44%)

Query:     8 VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
             +++GAGI GL+ ++AL + GI              G AI++W N  + +  +G+ D +  
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:    68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
                 L+ M      S +  ++ S      R G     V R+ L   +       ++++  
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query:   128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
             +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct:   124 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 183

Query:   186 DFKLRHGLEP--KFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQF 242
             +  +   L P  ++  F+G+G R   +P +    Y+FF+   P+   ++ +       ++
Sbjct:   184 E--IDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRY 241

Query:   243 VLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD 302
                    + + + A+   T  + I +  +    P+      + +G V + GDA H  TPD
Sbjct:   242 FAGWAPPVQKLIAALDPQTT-NRIEIHDIE---PFS----RLVRGRVALLGDAGHSTTPD 293

Query:   303 IGQGGCAALEDGIIL 317
             IGQGGCAA+ED ++L
Sbjct:   294 IGQGGCAAMEDAVVL 308

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IDA

GO:0019628 "urate catabolic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)]

 Score = 246 (91.7 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 79/315 (25%), Positives = 141/315 (44%)

Query:     8 VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
             +++GAGI GL+ ++AL + GI              G AI++W N  + +  +G+ D +  
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:    68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
                 L+ M      S +  ++ S      R G     V R+ L   +       ++++  
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query:   128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
             +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct:   124 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 183

Query:   186 DFKLRHGLEP--KFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQF 242
             +  +   L P  ++  F+G+G R   +P +    Y+FF+   P+   ++ +       ++
Sbjct:   184 E--IDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRY 241

Query:   243 VLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD 302
                    + + + A+   T  + I +  +    P+      + +G V + GDA H  TPD
Sbjct:   242 FAGWAPPVQKLIAALDPQTT-NRIEIHDIE---PFS----RLVRGRVALLGDAGHSTTPD 293

Query:   303 IGQGGCAALEDGIIL 317
             IGQGGCAA+ED ++L
Sbjct:   294 IGQGGCAAMEDAVVL 308

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)]

 Score = 226 (84.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 78/324 (24%), Positives = 144/324 (44%)

Query:     8 VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
             +++G GI GL+ ++ L   GI              G AI++W N  + +  +G+ D +  
Sbjct:     4 LVIGGGIGGLSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIES 63

Query:    68 QHIQLQGMVVASSVSCQPASEISFKTKGNR-GGHEVRSVKRSLLMEALERELPSGTIRYS 126
                 +  +     +  +  ++ S      R GG        +L  E L+       +++ 
Sbjct:    64 YGGPMHFLAYKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREMLDF-WGRDAVQFG 122

Query:   127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGC 184
              +V   EE      V   DG++ +   LI  DG +S +  + LG+  +  +AG  +  G 
Sbjct:   123 KRVTRCEEHADGVRVWFTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGL 182

Query:   185 TDFKLRHGLEP--KFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEG-NPDKTK 240
              +  +   + P  ++  F+G+G R   +P +D   Y+FF+   P+   ++      D ++
Sbjct:   183 VE--IDEAIAPGNQWTTFVGEGKRVSLMPVSDGRFYFFFDVPLPAGLAEDRSTLRADLSR 240

Query:   241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
              F  S      +++ A ++    + I +  +    P+E     + +G V + GDA H  T
Sbjct:   241 YF--SGWAPQVQKLIAALDPQTTNRIEIHDIE---PFE----RLVRGKVALLGDAGHSTT 291

Query:   301 PDIGQGGCAALEDGIILARCIAEA 324
             PDIGQGGCAALED ++L     E+
Sbjct:   292 PDIGQGGCAALEDAVVLGDLFRES 315

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|Q88FY2 nicC "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas putida KT2440 (taxid:160488)]

 Score = 214 (80.4 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 80/331 (24%), Positives = 138/331 (41%)

Query:     1 MEEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVG 60
             M   + I IVGAG+ G   +  L + G               G  I +  N  +    +G
Sbjct:     1 MRGRQKIAIVGAGLGGAAAATLLQQAGFDVEVFEQAPAFTRLGAGIHIGPNVMKIFRRMG 60

Query:    61 ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRG-GHEVRSVKRSLLMEALERE-L 118
             +   L                +    S I       R  G    ++ R  L  AL+ E +
Sbjct:    61 LEQKLELMGSHPDFWFSRDGNTGDYLSRIPLGEFARREYGAAYITIHRGDL-HALQIEAI 119

Query:   119 PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAK-WLGFKKPAFAG 177
               GT+ +  ++  + + G    ++ ADG      ++IG DG++S + +  LG + P ++G
Sbjct:   120 QPGTVHFGKRLEKIVDEGDQVRLDFADGTHTVADIVIGADGIHSKIREELLGAEAPIYSG 179

Query:   178 ----RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE 233
                 R+ IRG    +     EP  + +        +     +  Y+F    P ++  + +
Sbjct:   180 WVAHRALIRGVNLAQHADVFEPCVKWWSEDRHMMVYYTTGKRDEYYFVTGVP-HEAWDFQ 238

Query:   234 GN-PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVA 292
             G   D +++ + +        V+ +++ T  +SI   PLR R P   LW   S+G + + 
Sbjct:   239 GAFVDSSQEEMRAAFEGYHPTVQKLIDAT--ESITKWPLRNRNPLP-LW---SRGRLVLL 292

Query:   293 GDAFHPMTPDIGQGGCAALEDGIILARCIAE 323
             GDA HPM P + QG C A+ED  +L RC+ E
Sbjct:   293 GDACHPMKPHMAQGACMAIEDAAMLTRCLQE 323

GO:0004497 "monooxygenase activity" evidence=IDA

GO:0019439 "aromatic compound catabolic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-45
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	2e-35
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	2e-27
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	6e-23
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	7e-22
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	1e-21
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	6e-19
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	9e-17
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	7e-14
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	9e-13
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	5e-11
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	9e-09
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	1e-08
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	1e-08
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	1e-07
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-07
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	3e-07
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	6e-07
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	9e-07
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	9e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-06
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	2e-06
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	2e-06
TIGR01789	370	TIGR01789, lycopene_cycl, lycopene cyclase	4e-06
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	4e-06
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	4e-06
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	4e-06
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	2e-05
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	2e-05
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	4e-05
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	5e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	5e-05
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	1e-04
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	2e-04
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	7e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	8e-04
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.001
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	0.001
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.001
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	0.002
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.002
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	0.002
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.003
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	0.003
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.004
PRK05714	405	PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methox	0.004
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	0.004
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	0.004

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  160 bits (407), Expect = 2e-45
 Identities = 102/364 (28%), Positives = 148/364 (40%), Gaps = 40/364 (10%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLE-SSESLRVTGFAITLWTNAWRALDAVGISDS 64
           D+ IVGAG AGL  +LAL R G+   +LE +   L   G  I L  NA RAL+ +G+ D 
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALE---RELPSG 121
           L    +    ++V           + F       G     V RS L+ AL    R LP+ 
Sbjct: 64  LEALGVPPLHVMVVDD---GGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV 120

Query: 122 TIRYSSKVVSVEESGLFKLVNLA-DGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
           T+R+ ++V +VE+ G    V L+ DG      +L+G DG NS V +  G     F+GR  
Sbjct: 121 TLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG--IAEFSGRDY 178

Query: 181 IRGC--TDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDK 238
            +     + +     E +  +       +  LP  D      +   P    ++L+G  D+
Sbjct: 179 GQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVW-SLPPGPAEDLQGLSDE 237

Query: 239 TKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN-ISKGNVCVAGDAFH 297
                      L E  + + E  PL  + +   R  +P  +       +G V + GDA H
Sbjct: 238 ---------EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAH 288

Query: 298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATE 357
            M P  GQG   ALED   LA  +A A           + G D          L  Y   
Sbjct: 289 AMHPLAGQGANLALEDAAALAEALAAA----------PRPGAD-------AAALAAYEAR 331

Query: 358 RRWR 361
           RR R
Sbjct: 332 RRPR 335

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score =  134 bits (338), Expect = 2e-35
 Identities = 90/414 (21%), Positives = 157/414 (37%), Gaps = 68/414 (16%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLR 66
           I I+GAGI GLT +  L   G    V E +ES++  G  I +  N  + L    ++  ++
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIK 62

Query: 67  QQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYS 126
                L  M +         +++  K+          ++ R  L++ ++  +    I   
Sbjct: 63  NAGQILSTMNLLDD-KGTLLNKVKLKS-----NTLNVTLHRQTLIDIIKSYVKEDAIFTG 116

Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFK-KPAFAGRSDIRGCT 185
            +V  +E       ++ ADG      + IG DG++S V + +    K  + G +  RG  
Sbjct: 117 KEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLI 176

Query: 186 D---FKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE--GNPDKTK 240
           D    KL        +++ G   R+G +P  +   YWF       +D +    G P    
Sbjct: 177 DDIDLKLPDC----AKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQA 232

Query: 241 QF---------VLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCV 291
            F         +L K  +       I +  PL S +                   G + +
Sbjct: 233 YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFV------------------YGRIVL 274

Query: 292 AGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGL 351
            GDA H  TP++GQG   A+ED I+LA C+     EK                      L
Sbjct: 275 LGDAAHATTPNMGQGAGQAMEDAIVLANCLNAYDFEK---------------------AL 313

Query: 352 KRYATERRWRSCELISMAYIVG----YDGKIINFLRDKIFSVLLGRLMMKILEF 401
           +RY   R   + ++I  +  +G     + K++  LR+++   +   L     +F
Sbjct: 314 QRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALAAGQTKF 367

Length = 373

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score =  111 bits (280), Expect = 2e-27
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 68/383 (17%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           + ++IVG GI GL+ ++AL R GI   ++E     RV G  ITL  NA RAL  +G+ D 
Sbjct: 5   KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE 64

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNR-GGHEV-------RSVKRSLLMEALER 116
             +      G+ +       P   +  +    R  G ++       R     +L +A   
Sbjct: 65  CLEAGFGFDGVDL-----FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARA 119

Query: 117 ELPSGT-IRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLG-FKKP 173
              +G  +R  + V ++E+      V  +DG   +  +++G DG+ S V +       +P
Sbjct: 120 ---AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEP 176

Query: 174 AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFF-NWCPSNQDKEL 232
            + G+   R          ++ +   +LG   + G +P ++  +Y F     P N   E 
Sbjct: 177 EYTGQGVWR--AVLPRPAEVD-RSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEP 233

Query: 233 EGNPDKTKQFVLSKCHDLPEQVKA-IVEN-----TPLDSILVSPLRYRYPWEVLWGNISK 286
           +      ++ +      + ++++  I ++      PL+++LV       PW        +
Sbjct: 234 DTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPA-----PW-------HR 281

Query: 287 GNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR 346
           G V + GDA H  TP + QG   A+ED I+LA                       EE  R
Sbjct: 282 GRVVLIGDAAHATTPHLAQGAGMAIEDAIVLA-----------------------EELAR 318

Query: 347 N---EIGLKRYATERRWRSCELI 366
           +   E  L+ Y   RRW  C ++
Sbjct: 319 HDSLEAALQAY-YARRWERCRMV 340

Length = 375

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 37/206 (17%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
            ++I G GI GLT +L LH+ GI  +V E++  LR  G  I L  +A R L  +G+ D+L
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTK-GNRGGHEVR-----------SVKR----SL 109
               I                 E+++  + G R   E R           S+ R     L
Sbjct: 62  DAIGI--------------RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQML 107

Query: 110 LMEALERELPSGTIRYSSKVVSVEESG---LFKLVNLADGAVFKTK--VLIGCDGVNSVV 164
           L++A+   L    +R   +VV  E+     +  L + A G +   +  VLIG DG++S V
Sbjct: 108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167

Query: 165 AKWL--GFKKPAFAGRSDIRGCTDFK 188
              L      P + G    RG T+  
Sbjct: 168 RAQLYPDEGPPRWNGVMMWRGVTEAP 193

Length = 413

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 95.5 bits (238), Expect = 7e-22
 Identities = 93/380 (24%), Positives = 141/380 (37%), Gaps = 65/380 (17%)

Query: 4   DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISD 63
           + D++IVG G AGL  +L L R G+R +++E   +  V   A  L       L   G+ D
Sbjct: 1   ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLED 60

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNR----GGHEVRSVKRSLLMEALERELP 119
            +  +    +GM +A   + +  +++ F T   R       E+  +    L E  E    
Sbjct: 61  RILAEGAPHEGMGLAFYNTSRRRADLDFLTSPPRVTVYPQTELEPI----LREHAEAR-- 114

Query: 120 SGTIRYSSKVVSVEESG---LFKLVNLADGAV--FKTKVLIGCDGVNSVVAKWLGFKKPA 174
              +R+ ++V+S+E+ G      + +  DG     + K L+GCDG  S V K LG +   
Sbjct: 115 GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQLGIEFEG 174

Query: 175 FAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTV---YWFFNW 223
           F G          D    +D   R  +         +GF     P         Y    W
Sbjct: 175 FEGVPFGSLDVLFDAPDLSDPVERAFVHYLIGAPHSRGF--MVGPWRSAGRSRYYVQVPW 232

Query: 224 CPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN 283
            P  +++  E   ++ KQ + S                  D   V  L     W V    
Sbjct: 233 DPEVEERPEEFTDEEAKQRLRSAVGI--------------DLADVEILWKS-IWGV-RSR 276

Query: 284 I----SKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGE 339
           +     KG V +AGDA H   P  GQG    ++D   LA  +A         V +  AGE
Sbjct: 277 VATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAA--------VLRGTAGE 328

Query: 340 DKEEFKRNEIGLKRYATERR 359
                      L  Y  ERR
Sbjct: 329 A---------LLDTYEAERR 339

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 6/169 (3%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           M +   ++IVG GI GL  +LAL R GI+  +LE +  +   G  I L  NA+ ALDA+G
Sbjct: 1   MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALG 60

Query: 61  ISDSLRQQ-----HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALE 115
           + ++ RQ+     H+ +   V A  V   P  +      GN      R+     L+EA+ 
Sbjct: 61  VGEAARQRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAV- 119

Query: 116 RELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
            + P    R S+ VV +E+ G    V    G  +    LIGCDGV SVV
Sbjct: 120 LDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168

Length = 396

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 88.6 bits (219), Expect = 6e-19
 Identities = 105/380 (27%), Positives = 160/380 (42%), Gaps = 41/380 (10%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGF---AITLWTNAWRALDAVGIS 62
           +++ G GI GL  +LA  + G   LV E   S +R  G     I + +NA  AL+A+ I 
Sbjct: 84  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDID 143

Query: 63  DSLRQQHI------QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
            + +          ++ G+V   S S     + +F    +RG    R + R  L + L R
Sbjct: 144 VAEQVMEAGCITGDRINGLVDGISGSWYVKFD-TFTPAASRGLPVTRVISRMTLQQILAR 202

Query: 117 ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL-GFKKPAF 175
            +    IR  S VV  E+SG    V L +G  ++  +L+G DG+ S V   L G  +  +
Sbjct: 203 AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATY 262

Query: 176 AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF-FNWCPSNQDKELEG 234
           +G +   G  DF         ++ FLG    +         + W+ F+  P+       G
Sbjct: 263 SGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNG 322

Query: 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
              +  +     C ++ + + A  E    D+IL   +  R P    WG   KG V + GD
Sbjct: 323 MKKRLFEIFDGWCDNVLDLLHATEE----DAILRRDIYDRSP-GFTWG---KGRVTLLGD 374

Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEA-----STEKPSGVTKDKAGEDKEEFKRNEI 349
           + H M P++GQGGC A+ED   LA  + EA      T  P  V                 
Sbjct: 375 SIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSS-------------- 420

Query: 350 GLKRYATERRWRSCELISMA 369
            LKRY   RR R   + +MA
Sbjct: 421 -LKRYEESRRLRVAIIHAMA 439

Length = 668

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 80.7 bits (200), Expect = 9e-17
 Identities = 86/385 (22%), Positives = 142/385 (36%), Gaps = 78/385 (20%)

Query: 6   DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRV-----TGFAITLWTNAWRALDAV 59
           DIVIVG G  GL  +LAL R G ++  ++E++                L   + R L+ +
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60

Query: 60  GISDSLRQQHIQ-LQGMVVASSVSCQPASEISFKTKGNRG---GH--EVRSVKRSLLMEA 113
           G+ D +     Q ++ + V+   S      + F          G+  E R ++++L  E 
Sbjct: 61  GVWDKIEPARAQPIRDIHVSDGGS---FGALHFDADEIGLEALGYVVENRVLQQALW-ER 116

Query: 114 LERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKP 173
           L+      TI   ++VV +        + L DG   + ++L+G DG NS V +  G    
Sbjct: 117 LQELPNRVTILCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTT 176

Query: 174 AFA-GRSDIRGCTDFKLRHGLEPK---FQQFLGKGFRYGFLPCNDQTVYWFFNWC----- 224
            +  G+S         ++H    +   +++F   G     LP  D       N       
Sbjct: 177 GWDYGQS----AVVANVKHERPHQGTAWERFTPTGPL-ALLPLPD-------NRSSLVWT 224

Query: 225 -PSNQDKELEGNPDKTKQFVLSK--CHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLW 281
            P  + + L    D+     L +     L                LV   R+ +P  +  
Sbjct: 225 LPPEEAERLLALSDEEFLAELQRAFGSRLGA------------ITLVGE-RHAFPLSLTH 271

Query: 282 GN--ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGE 339
               ++     + GDA H + P  GQG    L D   LA  + +A           + GE
Sbjct: 272 AKRYVAPRLALI-GDAAHTIHPLAGQGLNLGLRDVAALAEVLEDA----------RRRGE 320

Query: 340 DKEEFKRNEIG----LKRYATERRW 360
           D        IG    L+RY   RR+
Sbjct: 321 D--------IGSPRVLQRYERRRRF 337

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 7/181 (3%)

Query: 4   DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISD 63
               +I GAG+AGL+ +L L   G    ++E ++ L   G  + L  NA R L+ +G++D
Sbjct: 2   RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD 61

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEIS-FKTKGNRGGHEVRSVKRSLLMEALE---RELP 119
            L    +  + + +      +P   +        R  H      R+ L  AL    R  P
Sbjct: 62  RLSGTGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNP 121

Query: 120 SGTIRYSSKVVS--VEESGLFKLVNLADGAVF-KTKVLIGCDGVNSVVAKWLGFKKPAFA 176
              I+  +++ S     + +   +   +         LI CDGV S++    GF K  F+
Sbjct: 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFS 181

Query: 177 G 177
           G
Sbjct: 182 G 182

Length = 400

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 85/362 (23%), Positives = 139/362 (38%), Gaps = 65/362 (17%)

Query: 7   IVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           + I+G GIAG+  +L L +   +   + E++ +    G  ++   NA RA+  +G+ ++ 
Sbjct: 3   VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAY 62

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR-------------SVKRSLLME 112
            Q         VA S    P  +I F+    R G +               SV R+  ++
Sbjct: 63  TQ---------VADSTP-APWQDIWFEW---RNGSDASYLGATIAPGVGQSSVHRADFLD 109

Query: 113 ALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV----VAKWL 168
           AL + LP G   +  +   +EE      V   DG  ++  +LIG DG+ S     V +  
Sbjct: 110 ALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQ 169

Query: 169 GFK--KPAFAGRSDIRGCTD-FKLR-----HGLEPKF----QQFLGKGFRYGFLPCNDQT 216
           G    +P F+G    RG  D  +LR      GL+       Q +LG        P     
Sbjct: 170 GQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGR 229

Query: 217 VYWFFNWCPSNQDKELEGNPDK------TKQFVLSKCHDLPEQVKAIVENTPLDSILVSP 270
           +     +       +     D       T++ +L       +  +A++E  P  ++    
Sbjct: 230 LINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTL---- 285

Query: 271 LRYRYPWEV-----LWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEAS 325
                 W +     L G +  G V + GDA H M P  G G    LED   LAR + +  
Sbjct: 286 ------WALHDLAELPGYVH-GRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTE 338

Query: 326 TE 327
            E
Sbjct: 339 LE 340

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES--LRVTGFAITLWTNAWRALD-- 57
             + D+VIVGAG AG + +  L + G+  LVLE       +       L   A   L   
Sbjct: 1   MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-LSPRALEELIPD 59

Query: 58  -AVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
               I   +    I   G  VA  V       +             R+     L E  E 
Sbjct: 60  FDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVD------------RAKFDKWLAERAEE 107

Query: 117 ELPSGTIRYSSKVVSVE-ESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKP 173
                 +   ++V  V  E     +   A     + KV+I  DGVNS +A+ LG K  
Sbjct: 108 A--GAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDR 163

Length = 396

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--GFAITLWTNAWRALDAVGISD 63
           D+V+VGAG AG + +  L   G+R L+LE     R    G A++      RAL+ + +  
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSP-----RALEELDLPG 56

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVK--RSLLMEALERELPSG 121
            L    ++       +  S +   E           + +        L   A E      
Sbjct: 57  ELIVNLVRGARFFSPNGDSVEIPIE-------TELAYVIDRDAFDEQLAERAQEA---GA 106

Query: 122 TIRYSSKVVSVEESGLFKLVNLADGAV-FKTKVLIGCDGVNSVVAKWLGFKK 172
            +R  ++V+ VE      +V +         K++IG DG  S+VAK LG KK
Sbjct: 107 ELRLGTRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKK 158

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 6/161 (3%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLR 66
           + I GAGIAG T +  L R G    ++E +  LR  G+ +  W   +     +GI+D LR
Sbjct: 3   VAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR 62

Query: 67  QQHIQLQGMVVASSVSCQPASEISFKTKGNRG--GHEVRSVKRSLLMEALERELPSGT-I 123
           +   Q++ +        + A          R   G +  S+ R  L  A+   +      
Sbjct: 63  EAGYQIEHVRSVDPTGRRKA---DLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVET 119

Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
            +   + +++E      V    G      ++IG DG++S V
Sbjct: 120 IFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160

Length = 391

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 77/356 (21%), Positives = 120/356 (33%), Gaps = 73/356 (20%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLE-----------------SSESLRVTGFAITL 48
            ++IVG G  GL  +L L R G+ S+++E                 S E  R  G A   
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIA--- 65

Query: 49  WTNAWRALDAVGISDSLRQQ-------------HIQLQGMVVASSVSCQPASEISFKTKG 95
                  + + G+                      +L     A +    P          
Sbjct: 66  -----DEVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELP 120

Query: 96  NRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG---LFKLVNLADGAVFK-- 150
           +R   +   ++  LL  A     P  T+RY  ++   E+        + +L  G      
Sbjct: 121 HRIPQKY--LEPILLEHA--AAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIR 176

Query: 151 TKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCT-------DFKLRHGLEPKFQQFLGK 203
              L+GCDG  S V + LG     + G S ++                G +P +  +L  
Sbjct: 177 ADYLVGCDGARSAVRRSLGIS---YEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFN 233

Query: 204 GFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKC-HDLPEQVKAIVENTP 262
             R G L   D    W F+     +D E   +    + FV      D+  +V ++V    
Sbjct: 234 PDRRGVLVAIDGRDEWLFHQLRGGED-EFTIDDVDARAFVRRGVGEDIDYEVLSVV--PW 290

Query: 263 LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318
               LV+   YR           +G V +AGDA H  TP  G G    + D + LA
Sbjct: 291 TGRRLVAD-SYR-----------RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLA 334

Length = 545

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 63/346 (18%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS- 64
           D++I G+GIAG+  +  L   G    V+E +   R    A  L  +    + A+G+ D  
Sbjct: 7   DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV 66

Query: 65  -----LRQQHIQL--QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVK--RSLLMEALE 115
                LR+  ++L     ++AS         + +++    G   +   +  R LL+  L+
Sbjct: 67  FAAGGLRRDAMRLYHDKELIAS---------LDYRSASALGYFILIPCEQLRRLLLAKLD 117

Query: 116 RELPSGTIRYSSKVVSVE--ESGLFKLVNLADGAVFKTKVLIGCDGVNSVV--------A 165
              P+  +R+ + +  +E    G    V L+DG      VL+G DG  S++        A
Sbjct: 118 GL-PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPA 176

Query: 166 KWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCP 225
           + + +  P   G   +      +  + L     Q    G  Y F P  DQ      ++ P
Sbjct: 177 ERVPYATPMAFGTIALTDSV--RECNRLYVDSNQ----GLAY-FYPIGDQATRLVVSF-P 228

Query: 226 SNQDKELEGNPDKTK------QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRY----RY 275
           +++ +    +  +TK      +FV  +  D    + AI   T    I   PL      RY
Sbjct: 229 ADEMQGYLADTTRTKLLARLNEFVGDESAD---AMAAIGAGTAFPLI---PLGRMNLDRY 282

Query: 276 PWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCI 321
                     K NV + GDA H + P  GQG   A+ED   L  C+
Sbjct: 283 ---------HKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL 319

Length = 388

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL----RVTGFAITLWTNAWRALD 57
             D D+VIVGAG  GLT +  L + G+R LVLE   +L    R    A+ +   A R L 
Sbjct: 8   AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPR----AVGIDDEALRVLQ 63

Query: 58  AVGISDSLRQQHIQLQGM--------VVASSVSCQPASEISFKTKGNRGGHEVRSVKRS- 108
           A+G++D +        GM         +A         EI+  + G  G       +R+ 
Sbjct: 64  AIGLADEVLPHTTPNHGMRFLDAKGRCLA---------EIARPSTGEFGWP-----RRNA 109

Query: 109 --------LLMEALERELPSGTIRYSSKVVSVE--ESGLFKLVNLADGA--VFKTKVLIG 156
                   +L   L R  P   +R+  +V ++   + G+   +  ADG     + + ++G
Sbjct: 110 FHQPLLEAVLRAGLAR-FPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG 168

Query: 157 CDGVNSVVAKWLG 169
           CDG NS V + LG
Sbjct: 169 CDGANSFVRRTLG 181

Length = 500

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           + +V+ GA +AG   +  L R G    ++E    LR  G AI +   A   L+ +G+  +
Sbjct: 2   KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA 61

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIR 124
            ++   +++G    +S   +  +E+   T+    G  V S    LL + L  EL  G  +
Sbjct: 62  AQEHKTRIRG----ASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDL-VELLYGATQ 116

Query: 125 YSSK------VVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAK 166
            S +      + ++++ G    V     A  +  ++IG DG++S V +
Sbjct: 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRR 164

Length = 372

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 38/189 (20%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES----LRVTGF---AITLWTNAW 53
            +E  DI ++G G AGL  ++AL R G  S+ L + E     LR T     +I       
Sbjct: 4   EKEHTDIAVIGGGPAGLAAAIALARAG-ASVALVAPEPPYADLRTTALLGPSI------- 55

Query: 54  RALDAVGISDSLRQQHIQLQGM---------VVASSVSCQPASEISFKTKG-NRGGHEVR 103
           R L+ +G+   L      LQ M         + A  V  + A+EI     G N       
Sbjct: 56  RFLERLGLWARLAPHAAPLQSMRIVDATGRLIRAPEVRFR-AAEIGEDAFGYN------- 107

Query: 104 SVKRSLLMEALER---ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160
            +   LL  ALE    ELP+ T R+  +  SV        V LADG     ++++G DG 
Sbjct: 108 -IPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGR 165

Query: 161 NSVVAKWLG 169
           NS V +  G
Sbjct: 166 NSPVREAAG 174

Length = 388

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 33/199 (16%)

Query: 6   DIVIVGAGIAGLTTSLAL----HRLGIRSLVLESSESLRVTGFA------------ITLW 49
           D+VIVG G  GL  + AL        ++ L+L++ ++ ++                 ++ 
Sbjct: 2   DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSIT 61

Query: 50  TNAWRALDAVGISDSLRQQHIQ-LQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS 108
             +      +G  D ++   IQ    M V    S    + I F  + N        ++  
Sbjct: 62  PASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCS---LALIRFD-RDNGKEDMACIIEND 117

Query: 109 LLMEALEREL------------PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG 156
            +  +L   L            P+  I  +       ++  +  + L+DG V  TK+LIG
Sbjct: 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIG 177

Query: 157 CDGVNSVVAKWLGFKKPAF 175
            DG NS V K        +
Sbjct: 178 ADGSNSNVRKAANIDTTGW 196

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 44/184 (23%), Positives = 66/184 (35%), Gaps = 35/184 (19%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRALDAVGISDSL 65
            V++G  + GL  +L L R G    V E S + L   G  I L     RAL   G+    
Sbjct: 9   AVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGV---- 64

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKG----NRGGHEVRSVKR-------SLLMEAL 114
                                ++I   ++     +R G  V+           ++L  AL
Sbjct: 65  ------------------ALPADIGVPSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRAL 106

Query: 115 ERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKP 173
               P+        +V  E+ G       ADG      +L+G DG  S V A+ L   +P
Sbjct: 107 RAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRP 166

Query: 174 AFAG 177
            +AG
Sbjct: 167 TYAG 170

Length = 386

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-----SLRVTGFAITLWTNAWRA 55
          M    D+VI+G GI GL+ +  L   G    VLE+ E     + R  G  +  W +    
Sbjct: 1  MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGE 60

Query: 56 LDAV 59
          L+  
Sbjct: 61 LEVR 64

Length = 387

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----GFAITLWTNAWRALDAVGI 61
           D+ IVG GI GLT + AL   G+R  ++E+  +         +A++L +   R  + +G+
Sbjct: 20  DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSA--RIFEGIGV 77

Query: 62  SDSLRQQ-----HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
            + +  Q      I+L        V  QP  ++  +  G  G H+V       L+EAL+ 
Sbjct: 78  WEKILPQIGKFRQIRLSDADYPGVVKFQPT-DLGTEALGYVGEHQV-------LLEALQE 129

Query: 117 EL---PSGTIRYSSKVVSVEESGLFKLVNL-ADGAVFK--TKVLIGCDGVNSVVAKWLGF 170
            L   P+ T    ++VVSVE       V L  +G      +K+++  DG  S + +  G 
Sbjct: 130 FLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGI 189

Query: 171 K 171
           K
Sbjct: 190 K 190

Length = 415

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 79/350 (22%), Positives = 130/350 (37%), Gaps = 68/350 (19%)

Query: 6   DIVIVGAGIAGLTTSLALHRLG-IRSLVLES-SESLRVTGF---AITLWTNAWRALDAVG 60
           D++IVG G+ GL+ +LAL RLG I+  ++E+ S S    GF   ++ L   + + L+ +G
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLG 60

Query: 61  ISDSLRQQ-------HIQLQGMVVASSVSCQPASEISFKTKGNRGGH--EVRSVKRSLLM 111
           +   L          H+  QG   A+ +        +        G+  E+  + ++LL 
Sbjct: 61  LWPKLAPFATPILDIHVSDQGHFGATHLRASEFGLPAL-------GYVVELADLGQALLS 113

Query: 112 EA-----LERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAK 166
                  ++   P+           V        V L +G   + K+LI  DG NS V +
Sbjct: 114 RLALLTNIQLYCPARYKEIIRNQDYVR-------VTLDNGQQLRAKLLIAADGANSKVRE 166

Query: 167 WLG-------FKKPAFAGRSDIRGCTDFKLRHGLEPK---FQQFLGKGFRYGFLPCNDQT 216
            L        + + A              +RH    +   F++F   G     LP  D  
Sbjct: 167 LLSIPTEEHDYNQTALI----------ANIRHEQPHQGCAFERFTPHG-PLALLPLKDNY 215

Query: 217 VYWFFNWC-PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRY 275
                 WC PS Q   +   PD   +F+         +++       L  I     R  Y
Sbjct: 216 RSSLV-WCLPSKQADTIANLPD--AEFLA--------ELQQAFGWR-LGKITQVGERKTY 263

Query: 276 PWE-VLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEA 324
           P +  +        V + G+A   + P  GQG    L D   LA  + +A
Sbjct: 264 PLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDA 313

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 25/175 (14%)

Query: 6   DIVIVGAGIAGLTTSLALH--RLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISD 63
           D +IVG G+AG   +L L   R   R  V+E+  +  + G       + W   D+  +SD
Sbjct: 1   DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT--IGG------NHTWSFFDS-DLSD 51

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
           +   QH  L  +V        P  E+ F     +     RS+  +   E L +  P G I
Sbjct: 52  A---QHAWLADLVQTD----WPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVI 104

Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR 178
               K V ++  G    V+LA G     + +I C G         GF+   F GR
Sbjct: 105 L-GRKAVGLDADG----VDLAPGTRINARSVIDCRGFKPSAHLKGGFQV--FLGR 152

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. Length = 370

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 30/188 (15%)

Query: 1   MEEDE-DIVIVGAGIAGLTTSLALHRLGIRSLVLE---SSESLRVTG---FAITLWTNAW 53
           M ED  D +IVGAG+AG   +L L R G + LV+E   S+ +  VTG   +A +L     
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60

Query: 54  RALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEV-RSVKRSLLME 112
              D+  +   +  + +       A ++      E    T  ++  + V RS   + LME
Sbjct: 61  GFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDE----TSPSQRSYSVLRSKFDAWLME 116

Query: 113 ALER---ELPSG-----TIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
             E    +L +G      ++   KVV VE          ADG V + K +I  DGVNS++
Sbjct: 117 QAEEAGAQLITGIRVDNLVQRDGKVVGVE----------ADGDVIEAKTVILADGVNSIL 166

Query: 165 AKWLGFKK 172
           A+ LG  K
Sbjct: 167 AEKLGMAK 174

Length = 428

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 6   DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT--GFAITLWTNAWRALDAVGI 61
           D+VI G G  GL  ++AL +    +   V++++ +   +    A  +   A R L+A+G+
Sbjct: 3   DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGV 62

Query: 62  SDSLRQQHIQLQGMVVASSVSCQPASEI--SFKTKGNRGGHEVRSVKRSLLMEAL-EREL 118
            D +  +   +  MV+  S +  P   +  +F+ +   G      V+  +L+ AL +R  
Sbjct: 63  WDEIAPEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE 122

Query: 119 PSG-TIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162
             G  +R ++ V   E       V L+DG+V + ++L+  DG  S
Sbjct: 123 ALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167

Length = 403

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 6   DIVIVGAGIAGLTTSLALH----RLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGI 61
           D+VIVGAG+AGL   LAL     R G+R L++++             W++ +  L     
Sbjct: 1   DLVIVGAGLAGL--LLALRLRQARPGLRVLLIDAGPGPPFPNNHT--WSDEFEDLGP--- 53

Query: 62  SDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNR-GGHEVRSVKRSLLMEALERELP- 119
                     L   V  S     P  E+ F     +  G     V    L E L R    
Sbjct: 54  ----------LAPCVEHS----WPGYEVRFPDGRRKLIGRGYGRVSSDRLHEELLRRCAE 99

Query: 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKK 172
           +G IR ++KV SV+   +  LV L DG   + +++I   G +   A  +G++ 
Sbjct: 100 NGVIRLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARGASPSGALTVGYQT 152

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 29/116 (25%)

Query: 286 KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFK 345
            G V +AGDA H M P  GQG  + + D   LA  +A         V + +AG+      
Sbjct: 285 SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLA--------AVLRGRAGDAL---- 332

Query: 346 RNEIGLKRYATERRWRSCELISMAYIVGYDGKIIN-------FLRDKIFSVLLGRL 394
                L  Y  ERR  +  +I +A  +   G++I         LRD +  V  G L
Sbjct: 333 -----LDTYEQERRPHARAMIDLAVRL---GRVICPTDRLAAALRDAVLPV--GTL 378

Length = 500

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVL 33
           +  D+V+VG+G+AGLT +LA  R G R LV+
Sbjct: 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVV 45

Length = 541

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 20/172 (11%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           D+ ++G G AGL  +L L R G+R  ++E    +           + +   D   +SD  
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI--------PGNHTYGVWDD-DLSDL- 50

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRY 125
                 L   V           E  F  +  + G    SV  + L E L ++ P G + +
Sbjct: 51  -----GLADCVEHVWPDV---YEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLW 102

Query: 126 -SSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF 175
              K +  E  G+    V  A G   + +++I   G   +V          F
Sbjct: 103 LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGF 154

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
          D+V++G GI GL+T+  L R G+   +LE
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLE 29

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-------SLRVTGF 44
              D+V++GAG+ GL  +  L R G++  VLE ++       +  + GF
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF 50

Length = 487

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 285 SKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEA 324
           S G V + GDA HPMT  + QG C ALED + L + +   
Sbjct: 284 STGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC 323

Length = 396

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
          D+V++G+G+AGL  +L     G++  V+E  +         +   +A          DS 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSP 60

Query: 66 RQQ 68
             
Sbjct: 61 DLH 63

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 25/178 (14%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRALDAVGISDS 64
           D+ ++G G +G T +  L R GI +++LE + S ++  G AI         ++   I DS
Sbjct: 2   DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPP-----CLIEEFDIPDS 56

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT- 122
           L  + +    M+        P+      T  +  G+ V  V+R +    L ER   +G  
Sbjct: 57  LIDRRVTQMRMI-------SPSRVPIKVTIPSEDGY-VGMVRREVFDSYLRERAQKAGAE 108

Query: 123 --------IRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKK 172
                   +      V++      K      G+V +  V+IG DG NS VAK LG  K
Sbjct: 109 LIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSV-EADVVIGADGANSPVAKELGLPK 165

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWT 50
           +  D++I+G G AGLT ++   R G++ +++         G  +T  T
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP---GGQLTKTT 46

Length = 305

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 30/176 (17%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-------FAITLWTNAWRALDA 58
           D+V+VG G+ G + +LAL + G+R  +L      R          +AI+  + A+  L+ 
Sbjct: 7   DVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAF--LER 64

Query: 59  VGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGH-----EVRSVKRSLLMEA 113
           +G+  +L    +     V    V     + + F              E   ++R+ L  A
Sbjct: 65  LGVWQALDAARLA---PVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERA-LWAA 120

Query: 114 LERE-----LPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
           L  +      P+          +         + LADG V +  +++G DG +S V
Sbjct: 121 LRFQPNLTWFPARAQGLEVDPDAAT-------LTLADGQVLRADLVVGADGAHSWV 169

Length = 388

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWR 54
          M   + +VI+GAG AGLT +  L + G    VLE+     V G + T+     R
Sbjct: 1  MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP--VVGGISRTVTYKGNR 52

Length = 479

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 45/210 (21%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESLRVTGFAITLWTNAWRALDAV 59
           +    D+ I+GAG +GL  + AL + G+   ++ E  +   V G   T   N +  L   
Sbjct: 5   VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD--DVGG---TWRYNRYPGL--- 56

Query: 60  GISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP 119
              DS +                        F            +  +  + + LE+   
Sbjct: 57  -RLDSPKWL------------------LGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGL 97

Query: 120 SGTIRYSSKVVSV---EESGLFKLVNLADGAVFK--TKVLIGCDGVNSVVAKWLGFKKPA 174
              IR++++V      E++  +  V  +DG   +     ++   G  S          P 
Sbjct: 98  RFQIRFNTRVEVADWDEDTKRW-TVTTSDGGTGELTADFVVVATGHLSEP------YIPD 150

Query: 175 FAGRSDIRGCTDFKLRHGLE-PKFQQFLGK 203
           FAG  + +G    ++ H  + P  +   GK
Sbjct: 151 FAGLDEFKG----RILHSADWPNPEDLRGK 176

Length = 443

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLES 35
          + I+GAG AGL     LH  GI S+VLE 
Sbjct: 5  VAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

Length = 392

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESS--ESLR---VTGFAITLWTNAWRA-LDAV 59
           DIV+VGAG AGL+ + +L   G++  ++E     +L      G  I L T+A R  L  +
Sbjct: 5   DIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIAL-THASREILQRL 63

Query: 60  GISDSLRQQHI-QLQGMVVASSVSCQPASEISFKTKGNRG---GHEVRS--VKRSLLMEA 113
           G  D + +  I  L+   V +  S      ++F  +G      G+ V +  ++R+     
Sbjct: 64  GAWDRIPEDEISPLRDAKVLNGRSPFA---LTFDARGRGADALGYLVPNHLIRRAAYEAV 120

Query: 114 LERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG 159
              +     +   ++V +V        V LA+G     ++L+  D 
Sbjct: 121 --SQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADS 164

Length = 392

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAI 46
          +V+VGAG  GL  ++ L + G+  ++L+  ++L     AI
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAI 65

Length = 547

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 9  IVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          IVGAG++GL  +  L + G   LVLE  + +
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVL 33
          D+V+VG+G AGL+ +L+  + G  ++VL
Sbjct: 1  DVVVVGSGFAGLSAALSAKKAGAANVVL 28

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF----AITLWTNAWRALDAVGI 61
          D++++GAG AG++ +L     G++ L++E +E   V G     A T W    R   AVG 
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTE--YVGGTTATSAGTTWIPGTRHGLAVGP 75

Query: 62 SDSLRQQHIQLQGMV 76
           DSL      L  +V
Sbjct: 76 DDSLEAARTYLDALV 90

Length = 578

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 34/186 (18%)

Query: 6   DIVIVGAGIAGLTTSLALHRL---GIRSLVLE--SSESLRVTGF---AITLWTNAWRALD 57
           D++IVG G+AG T +LAL RL   G+   ++E  + ES    GF   AI L     + L 
Sbjct: 5   DVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLA 64

Query: 58  AVGISDSL-------RQQHIQLQGMVVASSVSCQ----PASEISFKTKGNRGGH--EVRS 104
            +G+  +L          H+  +G      +  +    PA            G+  E+  
Sbjct: 65  RLGVWQALADCATPITHIHVSDRGHAGFVRLDAEDYGVPAL-----------GYVVELHD 113

Query: 105 VKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
           V + L   AL  + P  T+   ++V +VE +     V L DG     ++L+  DG +S +
Sbjct: 114 VGQRL--FALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSAL 171

Query: 165 AKWLGF 170
            + LG 
Sbjct: 172 REALGI 177

Length = 395

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 4  DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35
          +  +V++GAGIAGLT +  L + G R  +LE 
Sbjct: 1  ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQ 32

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 38/187 (20%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFA---------ITLWTNAWRAL 56
           D++IVGAG+ G   +LAL   G+  L+L+    L V  F            L   + R L
Sbjct: 4   DLLIVGAGMVGSALALALQGSGLEVLLLDGG-PLSVKPFDPQAPFEPRVSALSAASQRIL 62

Query: 57  DAVGISDSLRQQHIQLQG-MVV------------ASSVSCQPASEISFKTKGNRGGHEVR 103
           + +G  D +  +       M V            A+SV  +    I           E R
Sbjct: 63  ERLGAWDGIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIV----------ENR 112

Query: 104 SVKRSLLMEALERELPSGT-IRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162
            V+ +L    LER   S   +  ++++  +  SG   L+ LADG   +  +++  DG NS
Sbjct: 113 VVQDAL----LERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168

Query: 163 VVAKWLG 169
            V +  G
Sbjct: 169 AVRRLAG 175

Length = 405

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 89/375 (23%), Positives = 139/375 (37%), Gaps = 63/375 (16%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE---------SLRVTGFAITLWTNAWRAL 56
           D VIVG G+ G   +LAL   G+   ++E  E          LRV  FA     NA   L
Sbjct: 8   DAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAA---DNA-ALL 63

Query: 57  DAVGISDSLRQQHIQ-LQGMVVASSVSCQPASEISFKTKGNRGGHEVRS--VKRSLLMEA 113
           D +G+  ++R    Q  + M V  +       E+ F    +  G E     V+  LL++ 
Sbjct: 64  DRLGVWPAVRAARAQPYRRMRVWDAGG---GGELGF--DADTLGREQLGWIVENDLLVDR 118

Query: 114 LERELPSGTIRY--SSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFK 171
           L   L +  ++    ++VV++E+      + L DG   +  + I  DG  S + +  G  
Sbjct: 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLP 178

Query: 172 KP--AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCND--QTVYWFFNWCPSN 227
                +A R  +    D +  H     +Q+FL  G     LP  D   ++ W        
Sbjct: 179 VSRHDYAQRG-VVAFVDTEHPHQ-ATAWQRFLPTG-PLALLPFADGRSSIVWTL------ 229

Query: 228 QDKELEGNPDKTKQFVLSKCHDL--PEQVKAIVENTPLDSILVSPLRYRYPWE-VLWGNI 284
                   PD   + VL+        E  +A      L  + V+  R  +P    L    
Sbjct: 230 --------PDAEAERVLALDEAAFSRELTQAFAAR--LGEVRVASPRTAFPLRRQLVQQY 279

Query: 285 SKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEF 344
             G V   GDA H + P  GQG    L D   L + + +A   +       +        
Sbjct: 280 VSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHR-------- 331

Query: 345 KRNEIGLKRYATERR 359
                 L+R+A  RR
Sbjct: 332 ------LQRWARTRR 340

Length = 392

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVL 33
            E  D++I+G+G+AGLT +L+L     R  VL
Sbjct: 4  DFEHPDVLIIGSGLAGLTAALSLAP-SFRVTVL 35

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PRK06753	373	hypothetical protein; Provisional	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK05868	372	hypothetical protein; Validated	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PLN02985	514	squalene monooxygenase	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
PRK11445	351	putative oxidoreductase; Provisional	100.0
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	100.0
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.97
PRK10015	429	oxidoreductase; Provisional	99.97
PRK10157	428	putative oxidoreductase FixC; Provisional	99.97
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.96
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.96
PLN02697	529	lycopene epsilon cyclase	99.95
PLN02463	447	lycopene beta cyclase	99.95
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.94
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.94
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.92
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.83
COG2081	408	Predicted flavoproteins [General function predicti	99.59
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.58
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.56
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.55
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.55
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.5
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.5
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.5
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.49
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.49
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.49
COG0579	429	Predicted dehydrogenase [General function predicti	99.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.45
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.43
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.42
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.41
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.41
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.4
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.4
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.39
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.38
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.38
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.36
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.35
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.34
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.33
PRK07233	434	hypothetical protein; Provisional	99.33
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.32
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.31
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.3
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.28
PRK05257	494	malate:quinone oxidoreductase; Validated	99.27
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.27
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.27
PLN02612	567	phytoene desaturase	99.26
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.26
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.24
PLN02568	539	polyamine oxidase	99.24
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.22
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.21
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.18
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.17
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.16
PLN02268	435	probable polyamine oxidase	99.16
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.15
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.14
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.12
PLN02576	496	protoporphyrinogen oxidase	99.11
PLN02676	487	polyamine oxidase	99.11
PRK07208	479	hypothetical protein; Provisional	99.11
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.1
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.09
PLN02487	569	zeta-carotene desaturase	99.09
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.08
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.06
PLN02661	357	Putative thiazole synthesis	99.06
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.05
PRK08274	466	tricarballylate dehydrogenase; Validated	99.05
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.04
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.03
PLN02976	1713	amine oxidase	99.02
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.02
PLN02529	738	lysine-specific histone demethylase 1	99.02
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.01
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.0
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.0
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.99
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.99
KOG2853	509	consensus Possible oxidoreductase [General functio	98.98
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.98
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.96
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.95
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.93
PRK06175	433	L-aspartate oxidase; Provisional	98.92
PLN03000	881	amine oxidase	98.92
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.9
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.89
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.89
PRK06370	463	mercuric reductase; Validated	98.89
PRK10262	321	thioredoxin reductase; Provisional	98.88
PRK07804	541	L-aspartate oxidase; Provisional	98.87
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.87
PRK09897	534	hypothetical protein; Provisional	98.86
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.86
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.86
PRK08401	466	L-aspartate oxidase; Provisional	98.85
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.84
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.83
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.83
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.82
PRK06116	450	glutathione reductase; Validated	98.82
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK07121	492	hypothetical protein; Validated	98.81
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.8
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.8
PRK14694	468	putative mercuric reductase; Provisional	98.79
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.79
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.78
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.78
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.78
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.78
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.78
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.77
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.76
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.75
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.73
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.72
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
PRK08071	510	L-aspartate oxidase; Provisional	98.71
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.7
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.69
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PLN02507	499	glutathione reductase	98.67
PRK13748	561	putative mercuric reductase; Provisional	98.66
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.66
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.64
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.64
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.62
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.62
PRK08275	554	putative oxidoreductase; Provisional	98.62
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.62
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.61
PLN02815	594	L-aspartate oxidase	98.59
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.58
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.57
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.56
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.56
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.55
PTZ00058	561	glutathione reductase; Provisional	98.55
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK07512	513	L-aspartate oxidase; Provisional	98.55
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
TIGR02053	463	MerA mercuric reductase. This model represents the	98.54
PRK14727	479	putative mercuric reductase; Provisional	98.54
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.54
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.53
PRK09077	536	L-aspartate oxidase; Provisional	98.53
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.52
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.52
KOG2852	380	consensus Possible oxidoreductase [General functio	98.52
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.51
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.51
PRK12839	572	hypothetical protein; Provisional	98.5
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.5
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.5
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.49
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.49
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.47
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.46
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.46
PTZ00052	499	thioredoxin reductase; Provisional	98.46
PRK07395	553	L-aspartate oxidase; Provisional	98.45
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.45
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.44
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.44
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.43
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.42
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.42
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.41
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.41
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.4
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.4
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.38
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.37
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.37
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.36
PLN02546	558	glutathione reductase	98.36
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.35
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.32
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.32
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.31
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.31
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.3
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.3
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.28
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.28
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.28
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.27
PRK06116	450	glutathione reductase; Validated	98.27
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.27
PRK07846	451	mycothione reductase; Reviewed	98.26
PRK07846	451	mycothione reductase; Reviewed	98.24
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.22
COG3349	485	Uncharacterized conserved protein [Function unknow	98.21
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.21
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.2
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.19
PLN02507	499	glutathione reductase	98.19
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.19
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.15
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.15
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.14
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.13
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.13
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.11
TIGR02053	463	MerA mercuric reductase. This model represents the	98.09
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.09
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.08
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.08
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.07
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.07
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.05
PRK06370	463	mercuric reductase; Validated	98.05
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.02
PLN02852	491	ferredoxin-NADP+ reductase	98.01
PRK12831	464	putative oxidoreductase; Provisional	98.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.99
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.98
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.97
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.97
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.97
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.96
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.95
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.95
PTZ00052	499	thioredoxin reductase; Provisional	97.95
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.94
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.93
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.92
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.91
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.91
PTZ00188	506	adrenodoxin reductase; Provisional	97.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.9
PRK14694	468	putative mercuric reductase; Provisional	97.89
PRK02106	560	choline dehydrogenase; Validated	97.88
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.87
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.86
PTZ00058	561	glutathione reductase; Provisional	97.86
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.86
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.86
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.85
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.85
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.84
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.84
PRK14727	479	putative mercuric reductase; Provisional	97.83
PRK13748	561	putative mercuric reductase; Provisional	97.82
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.81
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.81
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.8
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.77
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.76
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.75
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.71
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.69
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.69
PLN02546	558	glutathione reductase	97.66
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.64
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.62
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.59
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.58
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.57
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.54
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.52
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.52
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.52
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.52
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.5
COG3573	552	Predicted oxidoreductase [General function predict	97.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.46
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.38
PRK10262	321	thioredoxin reductase; Provisional	97.37
PRK13984	604	putative oxidoreductase; Provisional	97.35
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.25
PLN02785	587	Protein HOTHEAD	97.24
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.23
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.17
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	97.16
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.15
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.1
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.09
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.04
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.0
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.99
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.93
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.9
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.89
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.88
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.84
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.8
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.72
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.71
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.69
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.64
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.6
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.59
PRK12831	464	putative oxidoreductase; Provisional	96.59
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.58
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.53
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.42
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.41
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.28
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.28
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.21
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.21
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.21
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.06
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.03
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.98
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.96
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.94
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.76
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.7
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.68
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.65
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.62
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.62
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.58
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.54
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.52
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.46
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.44
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.42
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.39
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.34
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.34
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.31
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.31
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.21
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.18
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.18
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.16
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.15
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.13
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.12
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.1
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.09
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.09
PRK04148	134	hypothetical protein; Provisional	95.03
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.96
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.94
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.93
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.88
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.84
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.83
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.79
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.74
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.67
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.65
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	94.59
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.58
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.57
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.54
PRK07417	279	arogenate dehydrogenase; Reviewed	94.46
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.27
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.23
KOG2755	334	consensus Oxidoreductase [General function predict	94.21
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.2
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.17
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.16
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.15
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.03
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.9
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.88
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.83
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.82
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.77
PRK13984	604	putative oxidoreductase; Provisional	93.76
PRK05442	326	malate dehydrogenase; Provisional	93.75
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.75
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.73
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.72
PRK06223	307	malate dehydrogenase; Reviewed	93.71
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.68
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.65
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.62
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.61
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.58
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.56
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.51
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.46
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.38
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.34
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.32
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.24
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.21
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.21
PTZ00117	319	malate dehydrogenase; Provisional	93.17
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.14
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.13
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.12
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.11
PRK08328	231	hypothetical protein; Provisional	93.1
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	93.08
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.06
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.03
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.02
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.0
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.95
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.94
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.94
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.86
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	92.86
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.84
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.78
PRK09496	453	trkA potassium transporter peripheral membrane com	92.75
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.64
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.63
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	92.62
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.61
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.57
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.52
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.44
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.42
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.41
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.39
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.38
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	92.38
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	92.36
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.36
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.35
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.31
PRK06849	389	hypothetical protein; Provisional	92.21
PRK08223	287	hypothetical protein; Validated	92.13

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=349.77  Aligned_cols=362  Identities=23%  Similarity=0.371  Sum_probs=274.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ++|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.+++++++.|+.+|+.+.+...+.+.....+++.. +.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~-g~   79 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK-GT   79 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC-CC
Confidence            48999999999999999999999999999999988888899999999999999999999988877777777776543 33


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      ......+.     .....+.++|..|.+.|.+.+++..++++++|++++.++++++|++.+|+++.+|+||+|||.+|.+
T Consensus        80 ~~~~~~~~-----~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         80 LLNKVKLK-----SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             EEeecccc-----cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence            32222221     1223457999999999999988788999999999998888899999999999999999999999999


Q ss_pred             HhHhCCCC-CcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHH
Q 015331          165 AKWLGFKK-PAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFV  243 (409)
Q Consensus       165 r~~lg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (409)
                      |+.++... ..+.+..++.+....... ........++..+..++++|..++..+|.+.+..+.......   ....+.+
T Consensus       155 R~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l  230 (373)
T PRK06753        155 RQSVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS---SFGKPHL  230 (373)
T ss_pred             HHHhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc---cccHHHH
Confidence            99987543 334556666554432211 112223344555556889999999888877665332211111   1113556


Q ss_pred             HHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHH
Q 015331          244 LSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAE  323 (409)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~  323 (409)
                      .+.+..+++.+.++++..........+.....+    .++|..+|++|+|||||.++|+.|||+|+||+||..|++.|..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~  306 (373)
T PRK06753        231 QAYFNHYPNEVREILDKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA  306 (373)
T ss_pred             HHHHhcCChHHHHHHHhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh
Confidence            677778888888888765432222223222222    2367889999999999999999999999999999999999953


Q ss_pred             HhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhhhhhhhhh
Q 015331          324 ASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKIL  399 (409)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~  399 (409)
                                           ...+++|+.|+++|++++..+++.|+..+.    ..+....+|+.+|.......+....
T Consensus       307 ---------------------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~  365 (373)
T PRK06753        307 ---------------------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALAAGQT  365 (373)
T ss_pred             ---------------------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCChhhhhhhh
Confidence                                 156899999999999999999999988776    6667888999999877655554444


Q ss_pred             cc
Q 015331          400 EF  401 (409)
Q Consensus       400 ~~  401 (409)
                      .|
T Consensus       366 ~~  367 (373)
T PRK06753        366 KF  367 (373)
T ss_pred             hh
Confidence            33

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=1.3e-45  Score=349.39  Aligned_cols=356  Identities=27%  Similarity=0.330  Sum_probs=261.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-CccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+||+||||||+||++|+.|+++|++|+|||+. ......++++.++++++++|+++|+.+.+.....+......+....
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            579999999999999999999999999999998 4556677999999999999999999888877666555554444322


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEc-CCCEEecCEEEEcC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLA-DGAVFKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~-~g~~~~ad~vV~Ad  158 (409)
                      . .  .+.+...........+.+.+..|.+.|.+.+.   +++++++++|+.++.+++.++++++ +|++++||+||+||
T Consensus        82 ~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD  158 (387)
T COG0654          82 R-R--LLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD  158 (387)
T ss_pred             c-e--eEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence            2 1  22222222222445568999999999998773   4799999999999999999889988 99999999999999


Q ss_pred             CCchHhHhHhCCC-CCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331          159 GVNSVVAKWLGFK-KPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP  236 (409)
Q Consensus       159 G~~s~vr~~lg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (409)
                      |.+|.+|+.+++. ... .+....+......+  .+.......++.+...+.++|++++.....+.............+.
T Consensus       159 G~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T COG0654         159 GANSAVRRAAGIAEFSGRDYGQTALVANVEPE--EPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD  236 (387)
T ss_pred             CCchHHHHhcCCCCccCCCCCceEEEEEeecC--CCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence            9999999999933 222 34555545444443  2222333334555556889999965544444444443333344555


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331          237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~  316 (409)
                      +.+.+.+.+.+....+    ............+++..     .....|..+|++|+|||||.++|+.|||+|+|++||..
T Consensus       237 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~pl~~-----~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~  307 (387)
T COG0654         237 EEFLRELQRRLGERDP----LGRVTLVSSRSAFPLSL-----RVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAA  307 (387)
T ss_pred             HHHHHHHHHhcCcccc----cceEEEccccccccccc-----hhhhheecCcEEEEeeccccCCCccccchhhhhhhHHH
Confidence            5555566665542222    11111112222333332     34456778999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHH
Q 015331          317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVL  390 (409)
Q Consensus       317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~  390 (409)
                      |++.|.++....                .+ +.+|+.|+++|++++..++..+..+..    ..++...+|+..+..+
T Consensus       308 La~~L~~~~~~~----------------~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~  368 (387)
T COG0654         308 LAEALAAAPRPG----------------AD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLL  368 (387)
T ss_pred             HHHHHHHHhhcC----------------cc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhh
Confidence            999999987631                12 899999999999999999999975544    8899999999999975

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3.2e-46  Score=333.25  Aligned_cols=398  Identities=37%  Similarity=0.556  Sum_probs=304.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +-+|+|||||++||++|++|+|+|++|+|+|+..+++..+.++.+..+++++|+.+|+.+.+.+.+.+..+.......++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            45899999999999999999999999999999999998899999999999999999999999999998876655555566


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCc------eEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS------KVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~------~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                      .....+.+.....   +...+..|..+...|.+.++..++++..      ....++..+....|++.+|.++++|++|+|
T Consensus        82 ~~~~~~~~~~~~~---~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligC  158 (420)
T KOG2614|consen   82 KEVSRILYGEPDE---YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGC  158 (420)
T ss_pred             CeeEecccCCchH---HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEc
Confidence            6666665554332   2344666777777888877766777664      445555566667789999999999999999


Q ss_pred             CCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChh
Q 015331          158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPD  237 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      ||++|.||++++...+.+.+..+++++..++.++++......+.+++.+++..|.....++|+...+..........+++
T Consensus       159 DGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~  238 (420)
T KOG2614|consen  159 DGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPE  238 (420)
T ss_pred             CchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHH
Confidence            99999999999998899999999999988887776644444445565566656655555555542222222222344566


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHH
Q 015331          238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIIL  317 (409)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~L  317 (409)
                      ..++...+.+..++..+.++++....+.+...++..++|++.+..+...++++|+|||||.|.|+.|||+|+|++|+.+|
T Consensus       239 ~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VL  318 (420)
T KOG2614|consen  239 KLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVL  318 (420)
T ss_pred             HHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHH
Confidence            77777777777889999999999988888888899999998888888888999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhH--HHHHHHHHHHHHh
Q 015331          318 ARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKI--INFLRDKIFSVLL  391 (409)
Q Consensus       318 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~--~~~~r~~~~~~~~  391 (409)
                      +++|.++... .|-..+.+.. -..+..-++.++..|..+|+.+...+..-++..+.    ..++  ...+|+..+..++
T Consensus       319 a~~L~~~~~d-~s~~~~~~s~-~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l  396 (420)
T KOG2614|consen  319 AECLDEAIND-VSLAGEEYSR-ENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEAL  396 (420)
T ss_pred             HHHHHHhccc-hhccccceec-ccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHH
Confidence            9999998763 1111112110 11222338899999999998888877777766655    4444  4456777777777


Q ss_pred             hhhhhhhhcccCCcc
Q 015331          392 GRLMMKILEFDCGKL  406 (409)
Q Consensus       392 ~~~~~~~~~~~~~~~  406 (409)
                      .+...+.-.+.+|-.
T Consensus       397 ~~~~~~~~~~~~g~~  411 (420)
T KOG2614|consen  397 ERLGIKKKILNDGSF  411 (420)
T ss_pred             HHHHhhhhhhcccch
Confidence            777666666666543

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=8.2e-45  Score=346.08  Aligned_cols=369  Identities=22%  Similarity=0.292  Sum_probs=265.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+||||||+||++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+.+.+.......+.......
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            58999999999999999999999999999999988888899999999999999999999987766554443333221111


Q ss_pred             cccccccccc-CCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc---CCCEEecCEEEEc
Q 015331           85 PASEISFKTK-GNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA---DGAVFKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~~~~ad~vV~A  157 (409)
                      .......... ..........++|..|.+.|.+.+   ++++++++++|++++.+++.+++++.   +++++++|+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA  162 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC  162 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence            1111111110 011122234689999999999876   35789999999999988888887763   3457999999999


Q ss_pred             CCCchHhHhHhCCCCCcccCceeEEEeeecCccCC-------CccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331          158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHG-------LEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      ||.+|.+|+.++.....+.+..++++.+..+....       .......+++++..+..+|++++..++++.+..+....
T Consensus       163 DG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  242 (400)
T PRK06475        163 DGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPG  242 (400)
T ss_pred             CCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCc
Confidence            99999999999776666778888777654332110       11223445677778889999988766655443322211


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      . ........+.+.+.+..|.+.+..+++...  ....+++....+.    ..|..+|++|+|||||.++|+.|||+|+|
T Consensus       243 ~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~a  315 (400)
T PRK06475        243 E-VWSKTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMA  315 (400)
T ss_pred             c-cCCCCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHH
Confidence            1 111111245677788899999888887653  2334554433221    13356899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIF  387 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~  387 (409)
                      |+||..|+++|..   .                  ++..+|+.|++.|++++..++..++....   ........|+..+
T Consensus       316 ieDa~~La~~L~~---~------------------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~r~~~~  374 (400)
T PRK06475        316 IEDAAALAEALDS---D------------------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLF  374 (400)
T ss_pred             HHHHHHHHHHHhc---C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999963   1                  46689999999999999999999864433   4456777899988


Q ss_pred             HHHhhhhhhhhhcc
Q 015331          388 SVLLGRLMMKILEF  401 (409)
Q Consensus       388 ~~~~~~~~~~~~~~  401 (409)
                      .......+.+...|
T Consensus       375 ~~~~~~~~~~~~~~  388 (400)
T PRK06475        375 AIRSPESFLKDLDW  388 (400)
T ss_pred             hhcChhhhccccCc
Confidence            76655555444443

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-45  Score=346.60  Aligned_cols=358  Identities=17%  Similarity=0.237  Sum_probs=262.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.++++++++|+++|+++.+.+.+.++..+.++.. ++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~   79 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR   79 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence            4899999999999999999999999999999988777778899999999999999999999887777777776644 333


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCC-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      ....+.+.......+...+.++|..|.+.|.+.+++ ++++++++|++++.++++++|++++|+++++|+||+|||.+|.
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588         80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            333333332222222234579999999999887654 7999999999999998999999999999999999999999999


Q ss_pred             hHhHhCCCCC---cccCceeEEEeeecCccC-CCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHH
Q 015331          164 VAKWLGFKKP---AFAGRSDIRGCTDFKLRH-GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKT  239 (409)
Q Consensus       164 vr~~lg~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (409)
                      +|+.+.....   .+.+...+.  ...+... .....+..+.+++..+.++|..++...+.+.+..+...  ...+.+..
T Consensus       160 vR~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~  235 (391)
T PRK07588        160 VRRLVFGPERDFEHYLGCKVAA--CVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDN--PPLTPAEE  235 (391)
T ss_pred             chhhccCCccceEEEcCcEEEE--EEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcc--ccCCHHHH
Confidence            9998633222   122322222  1221111 11223444556777788999988876666555433221  23345666


Q ss_pred             HHHHHHHhcCCCHHHHHHHHcCCC-CceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHH
Q 015331          240 KQFVLSKCHDLPEQVKAIVENTPL-DSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA  318 (409)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La  318 (409)
                      .+.+.+.+..+.+....+++.... ..+...+..     ....++|..+|++|+|||||.++|+.|||+|+||+||..|+
T Consensus       236 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La  310 (391)
T PRK07588        236 KQLLRDQFGDVGWETPDILAALDDVEDLYFDVVS-----QIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLA  310 (391)
T ss_pred             HHHHHHHhccCCccHHHHHHhhhcccchheeeee-----eeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHH
Confidence            777888887665544444433211 111111110     11234678899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331          319 RCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~  391 (409)
                      +.|....                   ...+.+|+.|++.|++++..++..+..++.    .+++...+|+.+|..+-
T Consensus       311 ~~L~~~~-------------------~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~  368 (391)
T PRK07588        311 GELARAG-------------------GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN  368 (391)
T ss_pred             HHHHhcc-------------------CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc
Confidence            9997621                   146789999999999999999999987766    67788899999999655

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.1e-44  Score=345.77  Aligned_cols=377  Identities=26%  Similarity=0.324  Sum_probs=277.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+++.||+||||||+||++|+.|+++|++|+||||.+.+...++++.+++++.++|+++|+++.+.+.........++..
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   80 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA   80 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence            78889999999999999999999999999999999998888889999999999999999999998877766666666654


Q ss_pred             cCCcccccccccccC-CCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331           81 VSCQPASEISFKTKG-NRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~  156 (409)
                      ..+.....+.+.... ...+.....++|..+.+.|.+.+.   +++++++++|++++.+++.+.+++.+|+++.+|+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~  160 (396)
T PRK08163         81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG  160 (396)
T ss_pred             CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence            344333333322111 111223346899999999998763   4789999999999988888999999998999999999


Q ss_pred             cCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCC--ccccceeecCceEEEEEecCCCeEEE-EEEEcCCCCCCCCC
Q 015331          157 CDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGL--EPKFQQFLGKGFRYGFLPCNDQTVYW-FFNWCPSNQDKELE  233 (409)
Q Consensus       157 AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~  233 (409)
                      |||.+|.+|+.+....+.+.+...+++.+........  ......+.+++.+++.+|..++..+. ++.+..+.... ..
T Consensus       161 AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~  239 (396)
T PRK08163        161 CDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEE-WG  239 (396)
T ss_pred             CCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcc-cc
Confidence            9999999999873334455666666665543221111  11123445666678889998876433 33333222111 11


Q ss_pred             CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      . .....+.+.+.+..+.+.+.++++...  .+..+......+    .++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus       240 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D  312 (396)
T PRK08163        240 V-KDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMALED  312 (396)
T ss_pred             c-CCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHHHHH
Confidence            1 111245677888888888888876542  222222222222    236788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFSVL  390 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~~~  390 (409)
                      |..|++.|...                   ..+++++|+.|+++|++++..++..++.++.   .......+|+.++...
T Consensus       313 a~~La~~L~~~-------------------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~r~~~~~~~  373 (396)
T PRK08163        313 AVTLGKALEGC-------------------DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAKGVERQVRNLLWKGR  373 (396)
T ss_pred             HHHHHHHHHhc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCHHHHHHHHHhhcc
Confidence            99999999752                   1257899999999999999999999988876   4456788899888877


Q ss_pred             hhhhhhhhhcccCC
Q 015331          391 LGRLMMKILEFDCG  404 (409)
Q Consensus       391 ~~~~~~~~~~~~~~  404 (409)
                      ....+.+...|..+
T Consensus       374 ~~~~~~~~~~~~~~  387 (396)
T PRK08163        374 TQEQFYDALEWLYG  387 (396)
T ss_pred             ChhhhhhhcCcccc
Confidence            76666666665543

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-43  Score=334.44  Aligned_cols=360  Identities=23%  Similarity=0.330  Sum_probs=263.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |.+..||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+++++.+.|+++|+.+.+.+...+.....++..
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP   80 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence            77888999999999999999999999999999999998888889999999999999999999998887777777666643


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .+.....+...............++|..+.+.|.+.+.  +++++++++|++++.+++.+.|.+.+|+++.+|+||+||
T Consensus        81 -~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         81 -DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             -CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence             33332222221111110112346889999999988663  679999999999998888899999999999999999999


Q ss_pred             CCchHhHhHh-CCC-CCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331          159 GVNSVVAKWL-GFK-KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP  236 (409)
Q Consensus       159 G~~s~vr~~l-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (409)
                      |.+|.+|+.+ +.. .+.+.+..++.+.+..+.  .. .....+.+++..+.++|.+++..++++....+..   .....
T Consensus       160 G~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~  233 (375)
T PRK06847        160 GLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EV-DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDN---PRIEP  233 (375)
T ss_pred             CCCcchhhHhcCCCCCceeccceEEEEEecCCC--Cc-cceEEEeCCCcEEEEEcCCCCeEEEEEeccCccc---ccCCh
Confidence            9999999987 443 344566666555443321  11 1234555666778889998887655554332221   12334


Q ss_pred             hHHHHHHHHHhcCCCH-HHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331          237 DKTKQFVLSKCHDLPE-QVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da  314 (409)
                      +.+.+.+.+.+..+++ ....+.+... .......++....    ...+|..+||+|+|||||.++|+.|||+|+||+||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA  309 (375)
T PRK06847        234 DTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLL----VPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA  309 (375)
T ss_pred             HHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhcc----CCCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence            5556677777777765 3444443221 1122222322211    12357889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chh---HHHHHHHHHH
Q 015331          315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGK---IINFLRDKIF  387 (409)
Q Consensus       315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~---~~~~~r~~~~  387 (409)
                      ..|++.|.+   .                 ..++++|+.|+++|++++..+++.|+.++.    ..+   ....+|++++
T Consensus       310 ~~La~~L~~---~-----------------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  369 (375)
T PRK06847        310 IVLAEELAR---H-----------------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESME  369 (375)
T ss_pred             HHHHHHHhh---C-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHH
Confidence            999999976   1                 267899999999999999999999988776    333   5667788777


Q ss_pred             HHHh
Q 015331          388 SVLL  391 (409)
Q Consensus       388 ~~~~  391 (409)
                      ..++
T Consensus       370 ~~~~  373 (375)
T PRK06847        370 LLAQ  373 (375)
T ss_pred             HhcC
Confidence            7543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=2.9e-44  Score=339.08  Aligned_cols=351  Identities=18%  Similarity=0.192  Sum_probs=246.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc----CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL----RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..    ...++++.+++++.++|+++|+++.+.+...++..+.+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            69999999999999999999999999999987432    23478999999999999999999998877777777776654


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                      . +.....+..  ..  .....+.++|..|.+.|.+.+.   +++++++++++++..+++.++|.+.++ +++||+||+|
T Consensus        82 ~-g~~~~~~~~--~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgA  155 (374)
T PRK06617         82 K-ASEILDLRN--DA--DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIIC  155 (374)
T ss_pred             C-CceEEEecC--CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEe
Confidence            3 322222222  11  1223568999999999998764   468899999999999888899999776 8999999999


Q ss_pred             CCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCCCCCCCh
Q 015331          158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDKELEGNP  236 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (409)
                      ||.+|.+|+.++..........++.+.+..+..+ ....++.+...|. ++++|+.++. ..+++....+........+.
T Consensus       156 DG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~  233 (374)
T PRK06617        156 DGANSKVRSHYFANEIEKPYQTALTFNIKHEKPH-ENCAMEHFLPLGP-FALLPLKDQYASSVIWSTSSDQAALIVNLPV  233 (374)
T ss_pred             CCCCchhHHhcCCCcccccCCeEEEEEEeccCCC-CCEEEEEecCCCC-EEEeECCCCCeEEEEEeCCHHHHHHHHcCCH
Confidence            9999999999977653333355555544433221 1223444545554 7889998875 33443332111111111222


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331          237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~  316 (409)
                      +.+.+.+...+   .+.+.. +.  .......+++...     ..++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus       234 ~~~~~~~~~~~---~~~~~~-i~--~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~  302 (374)
T PRK06617        234 EEVRFLTQRNA---GNSLGK-IT--IDSEISSFPLKAR-----IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEI  302 (374)
T ss_pred             HHHHHHHHHhh---chhcCc-ee--eccceeEEEeeee-----eccceecCCEEEEEcccccCCCCccccHHHHHHHHHH
Confidence            22322222211   111111 10  1112233343322     2347889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhh
Q 015331          317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLG  392 (409)
Q Consensus       317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~  392 (409)
                      |++.|..                        ..+|++|+++|++++..++..+..+..    +.+....+|+.+|..+-.
T Consensus       303 La~~L~~------------------------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~  358 (374)
T PRK06617        303 LSMIVSN------------------------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINN  358 (374)
T ss_pred             HHHHHcC------------------------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence            9998832                        147999999999999999999987765    778899999999986655


Q ss_pred             hhhhhh
Q 015331          393 RLMMKI  398 (409)
Q Consensus       393 ~~~~~~  398 (409)
                      -...|+
T Consensus       359 ~~~~k~  364 (374)
T PRK06617        359 FKPIKN  364 (374)
T ss_pred             CHHHHH
Confidence            444443

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=3.6e-44  Score=341.50  Aligned_cols=360  Identities=19%  Similarity=0.225  Sum_probs=246.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------ceeEEechhHHHHHHHcCCchHHHhh-cccccCe
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------GFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGM   75 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~   75 (409)
                      +++||+||||||+|+++|+.|+++|++|+|+|+.+.+...      .++..++++++++|+++|+++.+.+. ..++...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~   81 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM   81 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence            3689999999999999999999999999999998865421      25667899999999999999998764 4566666


Q ss_pred             EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331           76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK  152 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad  152 (409)
                      .++....   ...+.+.......++..+.++|..|.+.|.+.+   ++++++++++|++++.+++.++|++.+|+++++|
T Consensus        82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         82 EVWDKDS---FGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             EEEeCCC---CceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            6654321   112222222112223345799999999998866   3579999999999999888899999999999999


Q ss_pred             EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCC
Q 015331          153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDK  230 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~  230 (409)
                      +||+|||.+|.+|+.++++.... +...++.+.+.....+. ......+.+.+ .++++|..++. ..+++....+....
T Consensus       159 lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~  236 (400)
T PRK08013        159 LVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHD-AVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPEEAQR  236 (400)
T ss_pred             EEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCC-CEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHHHHHH
Confidence            99999999999999998875433 34444444443322111 11233444444 67788997754 33443332221111


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      ......+.+.+.+.+.+   .+.+.. ++..  .....+++...     ..++|..+||+|+|||||.++|+.|||+|+|
T Consensus       237 ~~~~~~~~~~~~l~~~~---~~~l~~-~~~~--~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~g  305 (400)
T PRK08013        237 MQQAPEEEFNRALAIAF---DNRLGL-CELE--SERQVFPLTGR-----YARQFAAHRLALVGDAAHTIHPLAGQGVNLG  305 (400)
T ss_pred             HHcCCHHHHHHHHHHHH---hHhhCc-eEec--CCccEEeccee-----ecccccCCcEEEEechhhcCCccccCchhhh
Confidence            01222333333333222   111110 0000  01112222221     3457889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI  386 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~  386 (409)
                      ++||..|++.|...+...          .    ......+|++|+++|++++..++..+.....    .++....+|+.+
T Consensus       306 i~Da~~La~~L~~~~~~~----------~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~  371 (400)
T PRK08013        306 FMDAAELIAELRRLHRQG----------K----DIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIG  371 (400)
T ss_pred             HHHHHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            999999999999866431          0    0012357999999999999999988866544    678899999999


Q ss_pred             HHHHhh
Q 015331          387 FSVLLG  392 (409)
Q Consensus       387 ~~~~~~  392 (409)
                      |..+..
T Consensus       372 l~~~~~  377 (400)
T PRK08013        372 LKLADT  377 (400)
T ss_pred             HHHHhh
Confidence            986544

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=4.3e-44  Score=341.88  Aligned_cols=366  Identities=18%  Similarity=0.184  Sum_probs=254.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-CccC----CcceeEEechhHHHHHHHcCCchHHHhh-cccccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLR----VTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQG   74 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~-~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~   74 (409)
                      |++.+||+||||||+|+++|+.|+++|++|+|+|+. +.+.    ...++..++++++++|+++|+++.+.+. ..++..
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   80 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA   80 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence            667899999999999999999999999999999996 3221    2346788999999999999999999764 566666


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT  151 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a  151 (409)
                      +.++....   ...+.+.......+...+.+.+..+.+.|.+.+   ++++++++++|++++.+++.+.|++.+|++++|
T Consensus        81 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a  157 (405)
T PRK08850         81 MEVWEQDS---FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA  157 (405)
T ss_pred             EEEEeCCC---CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence            66654321   122223222211122345678888888888765   357899999999999988889999999999999


Q ss_pred             CEEEEcCCCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCC
Q 015331          152 KVLIGCDGVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQD  229 (409)
Q Consensus       152 d~vV~AdG~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~  229 (409)
                      |+||+|||.+|.+|+.+++.... .++..++.+.+..+..+  ......+++++..+.++|+.++. ..+++........
T Consensus       158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~  235 (405)
T PRK08850        158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAE  235 (405)
T ss_pred             CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHH
Confidence            99999999999999999887543 24556666655443321  22223345555567889998654 3333333222111


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331          230 KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA  309 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~  309 (409)
                      .....+.+++.+.+.+.+.   ..+.. ++.  ......+++...     ..++|..+|++|+|||||.++|+.|||+|+
T Consensus       236 ~~~~~~~~~~~~~l~~~~~---~~~~~-~~~--~~~~~~~pl~~~-----~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~  304 (405)
T PRK08850        236 ALLAMSDEQFNKALTAEFD---NRLGL-CEV--VGERQAFPLKMR-----YARDFVRERVALVGDAAHTIHPLAGQGVNL  304 (405)
T ss_pred             HHHcCCHHHHHHHHHHHHh---hhhCc-EEE--cccccEEeccee-----eccccccCcEEEEEhhhhcCCccccccHHH
Confidence            1122233444454544432   11100 000  011112232221     235788999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331          310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK  385 (409)
Q Consensus       310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~  385 (409)
                      ||+||..|+++|.......              .......+|++|+++|++++..++..+..+..    .++....+|+.
T Consensus       305 ai~Da~~La~~L~~~~~~~--------------~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~  370 (405)
T PRK08850        305 GLLDAASLAQEILALWQQG--------------RDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGI  370 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcC--------------CCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            9999999999999876421              01135789999999999999999999976655    67788999999


Q ss_pred             HHHHHhhhhhh
Q 015331          386 IFSVLLGRLMM  396 (409)
Q Consensus       386 ~~~~~~~~~~~  396 (409)
                      +|..+..-...
T Consensus       371 ~l~~~~~~~~~  381 (405)
T PRK08850        371 GMSLAGQLPGA  381 (405)
T ss_pred             HHHHHhhCHHH
Confidence            99865554433

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=3e-43  Score=331.02  Aligned_cols=354  Identities=17%  Similarity=0.132  Sum_probs=245.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .||+||||||+|+++|+.|+++|++|+|||+.+.++..+.++.+.++++++|+++|+++.+.+...++....+++.. +.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~-g~   80 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD-GN   80 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC-CC
Confidence            38999999999999999999999999999999988888889999999999999999999988777777777776543 32


Q ss_pred             cccccccc-ccCCCCCccccccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           85 PASEISFK-TKGNRGGHEVRSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      ........ ..........+.+.|..|.+.|.+... +++++++++|++++.+++.++|++.+|+++++|+||+|||.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S  160 (372)
T PRK05868         81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS  160 (372)
T ss_pred             EEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence            22111111 011111122346789999998887653 6899999999999988888999999999999999999999999


Q ss_pred             HhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccce-eecCceEEEEEecCCCeE-EEEEEEcCCCCCCCCCCChhHH
Q 015331          163 VVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQ-FLGKGFRYGFLPCNDQTV-YWFFNWCPSNQDKELEGNPDKT  239 (409)
Q Consensus       163 ~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  239 (409)
                      .+|+.+....... .....+..++..+..... ..+.. +.+++.++.++|..++.. ..++.+...+... .....+..
T Consensus       161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  238 (372)
T PRK05868        161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQ  238 (372)
T ss_pred             hHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc-ccCChHHH
Confidence            9999984433222 222222333333332221 22333 357777788899887543 3334343322111 11223345


Q ss_pred             HHHHHHHhc--CCC-HHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331          240 KQFVLSKCH--DLP-EQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII  316 (409)
Q Consensus       240 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~  316 (409)
                      .+.+.+.|.  .|. +.+.+.+...  ..+....+.     ....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus       239 ~~~l~~~f~~~~w~~~~l~~~~~~~--~~~~~~~~~-----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~  311 (372)
T PRK05868        239 FAELQRRMAEDGWVRAQLLHYMRSA--PDFYFDEMS-----QILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYI  311 (372)
T ss_pred             HHHHHHHHhhCCCchHHHHhhcccC--Cceeeccce-----EEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHH
Confidence            677777776  454 3343433322  112111111     122347889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHH
Q 015331          317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIF  387 (409)
Q Consensus       317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~  387 (409)
                      |+++|...                   .++++++|+.|++.++|++.+.+........    .+.+..++|+..|
T Consensus       312 La~~L~~~-------------------~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~  367 (372)
T PRK05868        312 LAGELKAA-------------------GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSI  367 (372)
T ss_pred             HHHHHHhc-------------------CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhccc
Confidence            99999762                   1268999999999988877777776544422    6667667666544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=2e-43  Score=338.24  Aligned_cols=344  Identities=23%  Similarity=0.329  Sum_probs=251.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccc----cCeEEEe
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQL----QGMVVAS   79 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~~~~~~~   79 (409)
                      ++|+||||||+||++|+.|+++| ++|+||||.+.++..|.++.+.++++++|+++|+.+.+.+.....    ....+..
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            37999999999999999999998 699999999988888999999999999999999988877654221    1111111


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                       .++.....+....   ........++|..|.+.|.+.+++..++++++|++++.++++++|.+.+|+++++|+||+|||
T Consensus        81 -~~~~~~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG  156 (414)
T TIGR03219        81 -RNGSDASYLGATI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG  156 (414)
T ss_pred             -EecCccceeeeec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence             1111111111100   011122368999999999999887889999999999998889999999999999999999999


Q ss_pred             CchHhHhHhCC------CCCcccCceeEEEeeecCccC----------CCccccceeecCceEEEEEecCCCeEEEEEEE
Q 015331          160 VNSVVAKWLGF------KKPAFAGRSDIRGCTDFKLRH----------GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW  223 (409)
Q Consensus       160 ~~s~vr~~lg~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  223 (409)
                      .+|.+|+.+..      ..+.+.+..++++.+......          ........+.+.+.++.++|..+++.++++.+
T Consensus       157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~  236 (414)
T TIGR03219       157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF  236 (414)
T ss_pred             ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence            99999998731      234566777777765432110          00112234567777788899998876544444


Q ss_pred             cCCCCC------CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCC
Q 015331          224 CPSNQD------KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH  297 (409)
Q Consensus       224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~  297 (409)
                      ..+...      .......+...+.+.+.+..|++.+.++++......  .+++....+    .++|..+||+|+|||||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~----~~~w~~grv~LiGDAAH  310 (414)
T TIGR03219       237 ISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT--LWALHDLAE----LPGYVHGRVALIGDAAH  310 (414)
T ss_pred             EcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC--ceeeeeccc----ccceeeCcEEEEEcccC
Confidence            322111      001111223456778888899999998888764332  223322222    23778899999999999


Q ss_pred             CCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       298 ~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      .++|+.|||+|+||+||..|++.|.....+                ...++++|+.|+++|++++..+++.|+.++.
T Consensus       311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~----------------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~  371 (414)
T TIGR03219       311 AMLPHQGAGAGQGLEDAYFLARLLGDTELE----------------AGDLPALLEAYDDVRRPRACRVQRTSREAGE  371 (414)
T ss_pred             CCCCCcCcchHhHHHHHHHHHHHHHhhccC----------------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999875432                2478999999999999999999999988775

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=6.5e-43  Score=344.37  Aligned_cols=355  Identities=25%  Similarity=0.302  Sum_probs=253.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+++.+.+.+.....++.. ++
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~g   88 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-KG   88 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-CC
Confidence            67999999999999999999999999999999998877788999999999999999999999887777777666643 33


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc--CC--CEEecCEEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA--DG--AVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~--~g--~~~~ad~vV~  156 (409)
                      .....+...............+++..+++.|.+.+   ++++++++++|+++++++++++|++.  +|  .+++||+||+
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVg  168 (538)
T PRK06183         89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG  168 (538)
T ss_pred             CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEe
Confidence            33333332111111111234678889999988755   47899999999999999999988876  45  3799999999


Q ss_pred             cCCCchHhHhHhCCCCCcccCceeEEE-eeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331          157 CDGVNSVVAKWLGFKKPAFAGRSDIRG-CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       157 AdG~~s~vr~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.+++..........+.. .+..............++.++..+.++|..++...|.+...+.+... ....
T Consensus       169 ADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~  247 (538)
T PRK06183        169 CDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLAS  247 (538)
T ss_pred             cCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCC
Confidence            999999999999876443322222221 11111111112223345566667788999988877776664433211 1112


Q ss_pred             hhHHHHHHHHHhcCCC--HHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          236 PDKTKQFVLSKCHDLP--EQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      +    +.+.+.+..+.  +...+      ......+.+.     ....++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus       248 ~----~~~~~~l~~~~~~~~~~~------~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~D  312 (538)
T PRK06183        248 P----ENVWRLLAPWGPTPDDAE------LIRHAVYTFH-----ARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRD  312 (538)
T ss_pred             H----HHHHHHHHhhCCCCcceE------EEEEEeeeEc-----cEEhhhhccCCEEEEechhhcCCCccccchhhhHHH
Confidence            2    33333333321  10000      0011111111     123457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSV  389 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~  389 (409)
                      |..|++.|...+++.                 ..+.+|+.|+++|++++..+++.+..++.    .++....+|+.+|..
T Consensus       313 A~~La~kLa~~~~g~-----------------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~  375 (538)
T PRK06183        313 AANLAWKLAAVLRGR-----------------AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRA  375 (538)
T ss_pred             HHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHh
Confidence            999999999876653                 56789999999999999999999988766    778889999998876


Q ss_pred             Hhh
Q 015331          390 LLG  392 (409)
Q Consensus       390 ~~~  392 (409)
                      +..
T Consensus       376 ~~~  378 (538)
T PRK06183        376 LNY  378 (538)
T ss_pred             hhc
Confidence            543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=3.3e-43  Score=338.05  Aligned_cols=370  Identities=21%  Similarity=0.225  Sum_probs=256.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCccCC------------cceeEEechhHHHHHHHcCCchHHHhh
Q 015331            5 EDIVIVGAGIAGLTTSLALHR----LGIRSLVLESSESLRV------------TGFAITLWTNAWRALDAVGISDSLRQQ   68 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~----~g~~V~v~E~~~~~~~------------~~~~~~~~~~~~~~l~~~gl~~~~~~~   68 (409)
                      +||+||||||+|+++|+.|++    +|++|+|||+.+.+..            ..+++.++++++++|+.+|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999999    8999999999654331            347899999999999999999999765


Q ss_pred             c-ccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC-----CCeEEeCceEEEEEEe-------
Q 015331           69 H-IQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP-----SGTIRYSSKVVSVEES-------  135 (409)
Q Consensus        69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~-----~~~i~~~~~v~~v~~~-------  135 (409)
                      . .++..+.++... +.  ..+.+.... ......+.+++..+.+.|.+.+.     +++++++++|++++.+       
T Consensus        81 ~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~  156 (437)
T TIGR01989        81 RIQPFGRMQVWDGC-SL--ALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDN  156 (437)
T ss_pred             cCCceeeEEEecCC-CC--ceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCC
Confidence            3 455555554332 21  123333221 11223457899999998887652     4789999999999752       


Q ss_pred             CCeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCC
Q 015331          136 GLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCND  214 (409)
Q Consensus       136 ~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  214 (409)
                      ++.++|++.+|++++||+||+|||.+|.+|+.+++..... +.+.++.+.+...........++.|... ..+.++|+++
T Consensus       157 ~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~-g~~~~lPl~~  235 (437)
T TIGR01989       157 SNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT-GPIALLPLPD  235 (437)
T ss_pred             CCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC-CCEEEeECCC
Confidence            4678899999999999999999999999999998876544 3344445444433211222334455544 4578899998


Q ss_pred             CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc----CCCH------HHHHHHH--------------------cCCCC
Q 015331          215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH----DLPE------QVKAIVE--------------------NTPLD  264 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~--------------------~~~~~  264 (409)
                      +...|++.............+++.+.+.+.+.+.    .++.      ...++.+                    .....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T TIGR01989       236 NNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDK  315 (437)
T ss_pred             CCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecc
Confidence            8766665554332222233455666666655551    0000      0000000                    00000


Q ss_pred             ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhh
Q 015331          265 SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEF  344 (409)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~  344 (409)
                      ....+++..     ...++|..+|++|+|||||.++|+.|||+|+||+||..|++.|.++....          .    .
T Consensus       316 ~~~~~~~~~-----~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----------~----~  376 (437)
T TIGR01989       316 SRAAFPLGL-----GHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVG----------A----D  376 (437)
T ss_pred             cceeEEecc-----cchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcC----------C----C
Confidence            011222221     12347789999999999999999999999999999999999999876532          0    0


Q ss_pred             chHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhhhhhhhh
Q 015331          345 KRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKI  398 (409)
Q Consensus       345 ~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~  398 (409)
                      .....+|++|+++|++++..++..+..+..    .++....+|+.+|..+..-...|+
T Consensus       377 ~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~  434 (437)
T TIGR01989       377 IGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKN  434 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHH
Confidence            123569999999999999999999987765    778999999999987666555444

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=5.6e-43  Score=334.83  Aligned_cols=376  Identities=20%  Similarity=0.250  Sum_probs=257.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|+++|  ++|+|+|+.+...  ..+++..+++++.++|+++|+++.+.+.+.+.....++..
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            79999999999999999999995  9999999987643  3468999999999999999999999887777777766654


Q ss_pred             cCCcccc--cccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331           81 VSCQPAS--EISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~  156 (409)
                      ..+....  .+.+...........+.++|..+.+.|.+.+.  +++++++++|++++.+++.+.|++.+|.++++|+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333         82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence            3322211  12222111111122346899999999988764  6799999999999998889999999998999999999


Q ss_pred             cCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331          157 CDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       157 AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.+++..... ++..++........... ...... +.++..++++|.++++..|.+....+........+
T Consensus       162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~  239 (403)
T PRK07333        162 ADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHG-GRAEEH-FLPAGPFAILPLKGNRSSLVWTERTADAERLVALD  239 (403)
T ss_pred             cCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCC-CEEEEE-eCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCC
Confidence            9999999999998765332 34444444333332211 222233 33444578899998876654432211110001122


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      .+.+.+.+.+.+..+...+    ..  ......++...     ...++|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus       240 ~~~~~~~l~~~~~~~~~~~----~~--~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~  308 (403)
T PRK07333        240 DLVFEAELEQRFGHRLGEL----KV--LGKRRAFPLGL-----TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA  308 (403)
T ss_pred             HHHHHHHHHHHhhhhcCce----Ee--ccCccEeechh-----hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHH
Confidence            3333344444333221110    00  01111122211     2344788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~  391 (409)
                      .|+++|.......              .....+++|++|+++|++++..++..++....    .++....+|+.++..+.
T Consensus       309 ~La~~L~~~~~~~--------------~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  374 (403)
T PRK07333        309 ALAEVVVEAARLG--------------LDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVD  374 (403)
T ss_pred             HHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            9999999876421              01146889999999999999999999877664    67788899998887553


Q ss_pred             h-----hhhhhhhcccCCccc
Q 015331          392 G-----RLMMKILEFDCGKLC  407 (409)
Q Consensus       392 ~-----~~~~~~~~~~~~~~~  407 (409)
                      .     +.+++.+.-+++++|
T Consensus       375 ~~~~~~~~~~~~~~g~~~~~~  395 (403)
T PRK07333        375 RLPKLKSFFIRQAAGLTGDTP  395 (403)
T ss_pred             cCHHHHHHHHHHHhCcCCCCc
Confidence            3     334444433344455

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=4.2e-43  Score=336.88  Aligned_cols=360  Identities=19%  Similarity=0.221  Sum_probs=244.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC--cceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV--TGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+.+..  .++++.++++++++|+++|+++++.+.+.+.....+...
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            468999999999999999999999999999999987643  467889999999999999999998877777666655432


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEE
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVL  154 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~v  154 (409)
                      . +...  ..+...........+.+.+..+.+.|.+.+   ++++++++++|++++.+++.+.|++.++   .+++||+|
T Consensus        97 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlv  173 (415)
T PRK07364         97 D-YPGV--VKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLV  173 (415)
T ss_pred             C-CCce--eeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEE
Confidence            2 2111  122211111111223344456888887765   4688999999999998888888888643   36999999


Q ss_pred             EEcCCCchHhHhHhCCCCCccc-CceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331          155 IGCDGVNSVVAKWLGFKKPAFA-GRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE  233 (409)
Q Consensus       155 V~AdG~~s~vr~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |+|||.+|.+|+.++.....+. ...++...+..+..+. ...+..|+..+ .++++|.+++...+++....+.......
T Consensus       174 IgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~  251 (415)
T PRK07364        174 VAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHN-DIAYERFWPSG-PFAILPLPGNRCQIVWTAPHAQAKALLA  251 (415)
T ss_pred             EEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence            9999999999999987654332 2333333333322211 12223344444 4778999988765554332211111112


Q ss_pred             CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      .+.+++.+.+.+.+..+.+.+.    ..  .....+++..     ...++|..+|++|+|||||.++|+.|||+|+||+|
T Consensus       252 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D  320 (415)
T PRK07364        252 LPEAEFLAELQQRYGDQLGKLE----LL--GDRFLFPVQL-----MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRD  320 (415)
T ss_pred             CCHHHHHHHHHHHhhhhhcCce----ec--CCCceecchh-----hhhhhhcCCcEEEEecccccCCCcccccHhHHHHH
Confidence            2344555555554433222111    01  1112233321     12347788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSV  389 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~  389 (409)
                      |..|+++|.......          .    .-...++|++|+++|++++..++..+.....    .+++...+|+.++..
T Consensus       321 A~~La~~L~~~~~~~----------~----~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~  386 (415)
T PRK07364        321 AAALAQVLQTAHQRG----------E----DIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWL  386 (415)
T ss_pred             HHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            999999998875421          0    0122489999999999999999988876654    667888999998885


Q ss_pred             Hhh
Q 015331          390 LLG  392 (409)
Q Consensus       390 ~~~  392 (409)
                      +..
T Consensus       387 ~~~  389 (415)
T PRK07364        387 LRH  389 (415)
T ss_pred             Hhh
Confidence            543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=6.1e-43  Score=334.29  Aligned_cols=363  Identities=21%  Similarity=0.265  Sum_probs=245.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--------CCcceeEEechhHHHHHHHcCCchHHHhh-cccccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--------RVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQG   74 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~   74 (409)
                      .+||+||||||+|+++|+.|+++|++|+|||+.+..        ....++..+++++.++|+++|+++.+.+. ..++..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            479999999999999999999999999999998631        11235678999999999999999998753 455556


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK  152 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad  152 (409)
                      +.+++. ++.  ..+.+.......+...+.+++..+.+.|.+.+.  +++++++++|++++.+++.++|++.+|.+++||
T Consensus        82 ~~~~~~-~~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         82 MQVWDG-SGT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             EEEEcC-CCC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            665543 221  222332211111223457888899988887664  578999999999999888899999999889999


Q ss_pred             EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEE-EEEEcCCCC-
Q 015331          153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYW-FFNWCPSNQ-  228 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~~~~~~~-  228 (409)
                      +||+|||.+|.+|+.+++..... +...++...+..+..+. ...+..+ .++..+.++|+..+. ..| .+.+..+.. 
T Consensus       159 ~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~  236 (405)
T PRK05714        159 LVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQRF-TDDGPLAFLPLERDGDEHWCSIVWSTTPEE  236 (405)
T ss_pred             EEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEEc-CCCCCeEEeeCCCCCCCCeEEEEEECCHHH
Confidence            99999999999999998764432 22222222222222111 1223333 444468889986432 112 222222211 


Q ss_pred             -CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchh
Q 015331          229 -DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGG  307 (409)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~  307 (409)
                       ......+.+.+.+.+.+.+.   ..+.+++..   .....+++...     ..++|..+|++|+|||||.++|+.|||+
T Consensus       237 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~rv~LlGDAAH~~~P~~GQG~  305 (405)
T PRK05714        237 AERLMALDDDAFCAALERAFE---GRLGEVLSA---DPRLCVPLRQR-----HAKRYVEPGLALIGDAAHTIHPLAGQGV  305 (405)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH---HHhCCceec---CCccEEeccee-----ehhhhccCCEEEEEeccccCCCcccccc
Confidence             11112234444455544432   222222211   11223333332     2457889999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHH
Q 015331          308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLR  383 (409)
Q Consensus       308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r  383 (409)
                      |+||+||..|+++|..+....          .    ......+|+.|+++|++++..++..+..+++    +++....+|
T Consensus       306 n~al~DA~~La~~L~~~~~~g----------~----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R  371 (405)
T PRK05714        306 NLGFLDAAVLAEVLLHAAERG----------E----RLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLR  371 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            999999999999998765321          0    0123589999999999999999999987765    677899999


Q ss_pred             HHHHHHHhhhhhh
Q 015331          384 DKIFSVLLGRLMM  396 (409)
Q Consensus       384 ~~~~~~~~~~~~~  396 (409)
                      +..|+.+-.....
T Consensus       372 ~~~l~~~~~~~~~  384 (405)
T PRK05714        372 NTGLKLVDQMPEA  384 (405)
T ss_pred             HHHHHHHhhCHHH
Confidence            9999855433333

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=8.8e-42  Score=333.19  Aligned_cols=354  Identities=27%  Similarity=0.365  Sum_probs=254.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcc---eeEEechhHHHHHHHcCCc--hHHHhhccccc-Ce
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTG---FAITLWTNAWRALDAVGIS--DSLRQQHIQLQ-GM   75 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~---~~~~~~~~~~~~l~~~gl~--~~~~~~~~~~~-~~   75 (409)
                      ++++|+||||||+||++|+.|+++|++|+||||.+.. +..+   .++.++++++++|+.+|++  +++.+.+.... .+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            4689999999999999999999999999999998632 2222   4688999999999999853  55555443221 11


Q ss_pred             E-EEeccCCccccccccc-ccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331           76 V-VASSVSCQPASEISFK-TKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV  153 (409)
Q Consensus        76 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~  153 (409)
                      . +.....+.....+... ..........+.++|..|.+.|.+.++...++++++|++++.+++.++|++.+|+++++|+
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDl  239 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDL  239 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCE
Confidence            1 1121122221122111 1011111223579999999999988865567899999999999999999999999999999


Q ss_pred             EEEcCCCchHhHhHh-CCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          154 LIGCDGVNSVVAKWL-GFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       154 vV~AdG~~s~vr~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.+ +...+.+.+..++++.+..............+.+.+.++...|..++...|+.....+...   
T Consensus       240 VVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~---  316 (668)
T PLN02927        240 LVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGG---  316 (668)
T ss_pred             EEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccc---
Confidence            999999999999887 5555667788888877655322111222344567777777778888777676544332211   


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      ...++..++.+++.+..|.+.+.++++......+..+.+..+.+..    +|..+||+|+|||||.++|+.|||.|+||+
T Consensus       317 ~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~Aie  392 (668)
T PLN02927        317 ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIE  392 (668)
T ss_pred             cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHH
Confidence            1124556788889998999999998887654444444555444432    678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331          313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG  373 (409)
Q Consensus       313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~  373 (409)
                      ||..|++.|..+....          .......+++++|+.|+++|++++..++..++...
T Consensus       393 Da~~La~~L~~~~~~~----------~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~  443 (668)
T PLN02927        393 DSFQLALELDEAWKQS----------VETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAA  443 (668)
T ss_pred             HHHHHHHHHHHhhccc----------cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999875421          00011236889999999999999999999875553

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=6.9e-42  Score=325.17  Aligned_cols=358  Identities=19%  Similarity=0.187  Sum_probs=242.3

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccc-ccCeEEE
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQ-LQGMVVA   78 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~~~~~   78 (409)
                      |+ +++||+||||||+|+++|+.|+++|++|+|+|+.+.++..+.+..+++++.++|+++|+++.+.+.... .....++
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence            54 678999999999999999999999999999999998876666677999999999999999998775543 3333333


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKV  153 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~  153 (409)
                        .+++....+++..... .++ ...++|..|.+.|.+.+   ++++++++++|++++.+++.  +.|++.+|+++.+|+
T Consensus        81 --~~g~~~~~~~~~~~~~-~g~-~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~  156 (388)
T PRK07045         81 --HDKELIASLDYRSASA-LGY-FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV  156 (388)
T ss_pred             --cCCcEEEEecCCcccc-CCc-eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence              2343333333332111 122 23578999999998865   36899999999999886554  468888999999999


Q ss_pred             EEEcCCCchHhHhHh-CCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331          154 LIGCDGVNSVVAKWL-GFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKE  231 (409)
Q Consensus       154 vV~AdG~~s~vr~~l-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  231 (409)
                      ||+|||.+|.+|+.+ +...... +....+.+.+....... ......+..++.+.+++|.+++...|++.+..+.....
T Consensus       157 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  235 (388)
T PRK07045        157 LVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGY  235 (388)
T ss_pred             EEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhc
Confidence            999999999999974 5443221 22222334443332211 11112233334557789998887777766654432211


Q ss_pred             -CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCC-CceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331          232 -LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPL-DSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA  309 (409)
Q Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~  309 (409)
                       .....+.+.+.+.+.+   .+...+.++.... ..+...++.     ....++|..+||+|+|||||.++|+.|||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~  307 (388)
T PRK07045        236 LADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLG-----RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL  307 (388)
T ss_pred             cCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecC-----ccccccccCCCEEEEEccccccCCCccccHHH
Confidence             1122333333333322   1233333332211 111112222     12334778899999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331          310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK  385 (409)
Q Consensus       310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~  385 (409)
                      ||+||..|++.|..++.+                ....+++|++|+++|++++..++..++.+..    +...+...|.+
T Consensus       308 ai~Da~~La~~L~~~~~~----------------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (388)
T PRK07045        308 AIEDAGELGACLDLHLSG----------------QIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQ  371 (388)
T ss_pred             HHHHHHHHHHHHHhhcCC----------------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhh
Confidence            999999999999986543                1257889999999999999999999877665    44555555555


Q ss_pred             HH
Q 015331          386 IF  387 (409)
Q Consensus       386 ~~  387 (409)
                      ++
T Consensus       372 ~~  373 (388)
T PRK07045        372 LQ  373 (388)
T ss_pred             hh
Confidence            44

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=1.7e-42  Score=328.33  Aligned_cols=361  Identities=20%  Similarity=0.201  Sum_probs=242.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CC----cceeEEechhHHHHHHHcCCchHHHhh-ccccc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RV----TGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQ   73 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~   73 (409)
                      |. .+||+||||||+|+++|+.|++.|++|+|||+.+..  ..    ..+...++++++++|+++|+++.+.+. ..++.
T Consensus         1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            54 589999999999999999999999999999987532  11    124568999999999999999988763 34554


Q ss_pred             CeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEe
Q 015331           74 GMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFK  150 (409)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~  150 (409)
                      ....+....  .  ...+...........+.+.+..|...|.+.+   ++++++++++|++++.+++.++|++.+|.+++
T Consensus        80 ~~~~~~~~~--~--~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~  155 (384)
T PRK08849         80 RLETWEHPE--C--RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIE  155 (384)
T ss_pred             eEEEEeCCC--c--eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEE
Confidence            444433211  1  1112111111111224566667888887654   46899999999999999889999999999999


Q ss_pred             cCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC
Q 015331          151 TKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD  229 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  229 (409)
                      +|+||+|||.+|.+|+.+++..... +...++......... .....+..|...|. ..++|+.++...+++...+....
T Consensus       156 ~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~-~~~~pl~~~~~~~~~~~~~~~~~  233 (384)
T PRK08849        156 AKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP-QQDITWQQFTPSGP-RSFLPLCGNQGSLVWYDSPKRIK  233 (384)
T ss_pred             eeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC-CCCEEEEEeCCCCC-EEEeEcCCCceEEEEECCHHHHH
Confidence            9999999999999999998764333 223332222222221 12233444554444 45578876643333322211100


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331          230 KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA  309 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~  309 (409)
                      .....+++.+.+.+.+.+.   +.+.++    .......+++.     ....++|..+|++|+|||||.++|+.|||+|+
T Consensus       234 ~~~~~~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~l~-----~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~  301 (384)
T PRK08849        234 QLSAMNPEQLRSEILRHFP---AELGEI----KVLQHGSFPLT-----RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNL  301 (384)
T ss_pred             HHHcCCHHHHHHHHHHHhh---hhhCcE----EeccceEeecc-----ccccchhccCCEEEEEcccccCCCCccchHhH
Confidence            1112345555565655443   211111    11122223222     12345788999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331          310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK  385 (409)
Q Consensus       310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~  385 (409)
                      ||+||..|++.|...  +                 ...+++|+.|+++|++++..++..+..+..    .+..+..+|+.
T Consensus       302 al~Da~~L~~~l~~~--~-----------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~  362 (384)
T PRK08849        302 GFKDVDVLLAETEKQ--G-----------------VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNA  362 (384)
T ss_pred             HHHHHHHHHHHHHhc--C-----------------CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            999999999998642  1                 246789999999999999999988766544    45788999999


Q ss_pred             HHHHHhhhhhhhhh
Q 015331          386 IFSVLLGRLMMKIL  399 (409)
Q Consensus       386 ~~~~~~~~~~~~~~  399 (409)
                      +|..+....+.|+.
T Consensus       363 ~l~~~~~~~~~k~~  376 (384)
T PRK08849        363 ALKLAENSGPLKTQ  376 (384)
T ss_pred             HHHHHhccHHHHHH
Confidence            99977666655543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=1.5e-42  Score=330.21  Aligned_cols=367  Identities=20%  Similarity=0.207  Sum_probs=251.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC-----cceeEEechhHHHHHHHcCCchHHHhh-cccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV-----TGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~   76 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+.+.+..     ..+...++++++++|+++|+++.+.+. ..++....
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR   84 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence            568999999999999999999999999999999875432     125578999999999999999998763 45555555


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEE
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVL  154 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~v  154 (409)
                      ++....... ..+....  .......+.++|..|.+.|.+.+.  +++++++++|++++.+++.++|++.+|+++++|+|
T Consensus        85 ~~~~~~~~~-~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  161 (392)
T PRK08773         85 VWDAGGGGE-LGFDADT--LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA  161 (392)
T ss_pred             EEeCCCCce-EEechhc--cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence            543322111 1222111  111223457899999999987663  68999999999999988889999988889999999


Q ss_pred             EEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331          155 IGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE  233 (409)
Q Consensus       155 V~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      |+|||.+|.+|+.+++..+.. +...++...+....++ ....+..+... ..+.++|..++...|++.+..+.......
T Consensus       162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~  239 (392)
T PRK08773        162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLA  239 (392)
T ss_pred             EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHc
Confidence            999999999999998775432 2333333333322222 12233344444 45788999888766655553322111122


Q ss_pred             CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      .+.+.+.+.+.+.+..+...+.    ..  .....+++..     ...++|..+|++|+|||||.++|+.|||+|+|++|
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D  308 (392)
T PRK08773        240 LDEAAFSRELTQAFAARLGEVR----VA--SPRTAFPLRR-----QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRD  308 (392)
T ss_pred             CCHHHHHHHHHHHHhhhhcCeE----ec--CCccEeechh-----hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHH
Confidence            3344455555554432221111    00  1111223221     23457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc--c--chhHHHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG--Y--DGKIINFLRDKIFSV  389 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~--~--~~~~~~~~r~~~~~~  389 (409)
                      |..|+++|.+++...          .    ......+|++|+++|++++..+...+..+.  +  +++.+..+|+.+|..
T Consensus       309 a~~La~~L~~~~~~~----------~----~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~  374 (392)
T PRK08773        309 VAALQQLVRQAHARR----------A----DWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGL  374 (392)
T ss_pred             HHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            999999999876431          0    113457999999999999765555544333  3  788999999999997


Q ss_pred             Hhhhhhhhhh
Q 015331          390 LLGRLMMKIL  399 (409)
Q Consensus       390 ~~~~~~~~~~  399 (409)
                      +......|+.
T Consensus       375 ~~~~~~~k~~  384 (392)
T PRK08773        375 AGKLPPLVDA  384 (392)
T ss_pred             HhhCHHHHHH
Confidence            7766666554

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.1e-42  Score=331.05  Aligned_cols=363  Identities=18%  Similarity=0.197  Sum_probs=251.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++.+||+||||||+|+++|+.|+++|++|+|||+.+.+.. .++..+.+++.++|+++|+++.+.+...++..+.++...
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   83 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT   83 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence            3568999999999999999999999999999999876543 456778889999999999999998877777777776543


Q ss_pred             CCcccc--cccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           82 SCQPAS--EISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        82 ~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                       +....  ...+...........+.+++..+.+.|.+.+.  +...+++++|++++.+++.++|++++++++++|+||+|
T Consensus        84 -g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A  162 (388)
T PRK07494         84 -GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA  162 (388)
T ss_pred             -CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence             22111  11122111111222457899999999988763  22338899999999988999999999989999999999


Q ss_pred             CCCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331          158 DGVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP  236 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (409)
                      ||.+|.+|+.+++.... .++..++...+..+.++. ......+. +...+.++|++++...+++....+........+.
T Consensus       163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~  240 (388)
T PRK07494        163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQ-NVSTEFHT-EGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSD  240 (388)
T ss_pred             cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCC-CEEEEEeC-CCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCH
Confidence            99999999999887543 245555544443322211 11223333 4445778999877655544433222111122344


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          237 DKTKQFVLSKCHDLPEQVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      +++.+.+.+.+.       .++.... ......+++..     ...++|..+||+|+|||||.++|++|||+|+|++||.
T Consensus       241 ~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~  308 (388)
T PRK07494        241 AALSAAIEERMQ-------SMLGKLTLEPGRQAWPLSG-----QVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVA  308 (388)
T ss_pred             HHHHHHHHHHHh-------hhcCCeEEccCCcEeechH-----HHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHH
Confidence            444444443322       2222111 11112333332     2334778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~  391 (409)
                      .|++.|.....+                 ....++|++|+++|++++..++..+..+..    ..+....+|+.+|..+.
T Consensus       309 ~La~~L~~~~~~-----------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~  371 (388)
T PRK07494        309 TLVEIVEDRPED-----------------PGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLY  371 (388)
T ss_pred             HHHHHHHhcCCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            999999874322                 246789999999999999888877755543    78889999999998655


Q ss_pred             hhhhhh
Q 015331          392 GRLMMK  397 (409)
Q Consensus       392 ~~~~~~  397 (409)
                      .-...+
T Consensus       372 ~~~~~~  377 (388)
T PRK07494        372 SFGPLR  377 (388)
T ss_pred             hCHHHH
Confidence            544444

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=1e-42  Score=331.69  Aligned_cols=364  Identities=21%  Similarity=0.219  Sum_probs=252.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-----CcceeEEechhHHHHHHHcCCchHHHhhc-ccccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-----VTGFAITLWTNAWRALDAVGISDSLRQQH-IQLQG   74 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~   74 (409)
                      |+ ++||+||||||+|+++|+.|+++|++|+|+||.+.+.     ..+.++.+++++.++|+++|+++.+.... .+...
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~   79 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD   79 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence            55 6899999999999999999999999999999998642     34567788999999999999998886543 34445


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT  151 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a  151 (409)
                      ..++....   ...+.+...........+.++|..+.+.|.+.+   .+++++++++|++++.+++.+.|++++|++++|
T Consensus        80 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a  156 (392)
T PRK09126         80 AKVLNGRS---PFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA  156 (392)
T ss_pred             EEEEcCCC---CceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence            55543222   112233221111112234578888888888765   368999999999999888888999999999999


Q ss_pred             CEEEEcCCCchHhHhHhCCCCC-cccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331          152 KVLIGCDGVNSVVAKWLGFKKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       152 d~vV~AdG~~s~vr~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      |+||+|||.+|.+|+.+++... ...+...+........  ........+++.+..++++|..++...+++.+..+....
T Consensus       157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~  234 (392)
T PRK09126        157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEA  234 (392)
T ss_pred             CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHH
Confidence            9999999999999999987643 2334433333322221  112223345566667889999988776666543322111


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      ....+++.+.+.+.+.+.....   .+ .  .......+++..     ...++|..+|++|+|||||.++|++|||+|+|
T Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~---~~-~--~~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a  303 (392)
T PRK09126        235 LLALDPEAFAAEVTARFKGRLG---AM-R--LVSSRHAYPLVA-----VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLG  303 (392)
T ss_pred             HHcCCHHHHHHHHHHHHhhhcc---Ce-E--EcCCCcEeechH-----HHHHHHhhcceEEEehhhhcCCCcccchhhhh
Confidence            1123344444444444321111   00 0  011112223221     22347788999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI  386 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~  386 (409)
                      |+||..|++.|..+++..              .....+++|+.|+++|++++..++..++.+..    .+++...+|+.+
T Consensus       304 i~da~~la~~L~~~~~~~--------------~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  369 (392)
T PRK09126        304 LKGQDILARLILAAARRG--------------QDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAV  369 (392)
T ss_pred             HHHHHHHHHHHHHHHhcC--------------CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            999999999999876431              01135789999999999999999999977755    567888999999


Q ss_pred             HHHHhhhhh
Q 015331          387 FSVLLGRLM  395 (409)
Q Consensus       387 ~~~~~~~~~  395 (409)
                      |..+....+
T Consensus       370 ~~~~~~~~~  378 (392)
T PRK09126        370 LRAANRFPP  378 (392)
T ss_pred             HHHHhhChH
Confidence            987764333

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=9.3e-42  Score=326.47  Aligned_cols=340  Identities=26%  Similarity=0.325  Sum_probs=243.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+||++|+.|+++|++|+|||+.+.++..+.++.++++++++|+++|+++.+...+.+.....++... +.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~-g~   79 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRH-GQ   79 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCC-CC
Confidence            48999999999999999999999999999999988888899999999999999999999988877777777666442 32


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCC---C-CeEEeCceEEEEEEeCCeEEEEEcCC-----CEEecCEEE
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---S-GTIRYSSKVVSVEESGLFKLVNLADG-----AVFKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~-~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~~~ad~vV  155 (409)
                      ......... ........+.++|..|.+.|.+.+.   + ..++++++|++++.+++.+.+.+.++     .+++||+||
T Consensus        80 ~~~~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvI  158 (413)
T PRK07538         80 RIWSEPRGL-AAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLI  158 (413)
T ss_pred             EEeeccCCc-ccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEE
Confidence            222211111 1111223346899999999987652   3 47999999999998877766666543     379999999


Q ss_pred             EcCCCchHhHhHhCCC--CCcccCceeEEEeeecCccCCCccccceeec-CceEEEEEecCCC-------eEEEEEEEcC
Q 015331          156 GCDGVNSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG-KGFRYGFLPCNDQ-------TVYWFFNWCP  225 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~  225 (409)
                      +|||.+|.+|++++..  .+.+.+...+++....+..  .......+.+ .+..+.++|..++       .+.|.+.+..
T Consensus       159 gADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~  236 (413)
T PRK07538        159 GADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPF--LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV  236 (413)
T ss_pred             ECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccc--cCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence            9999999999998644  3445566666665443321  1111122232 3455778888753       4667766654


Q ss_pred             CCC--CCCCCCChhHHHHHHHHHhcCCCHH---HHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCC
Q 015331          226 SNQ--DKELEGNPDKTKQFVLSKCHDLPEQ---VKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT  300 (409)
Q Consensus       226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~  300 (409)
                      +..  ............+.+++.+.++...   +.++++..  .....+++....+.    ++|..+|++|+|||||.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~p~~~~~~~----~~w~~grv~LvGDAAH~~~  310 (413)
T PRK07538        237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA--EAIYEYPMVDRDPL----PRWTRGRVTLLGDAAHPMY  310 (413)
T ss_pred             CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC--cceeeccccccCCC----CcccCCcEEEEeeccCcCC
Confidence            321  1111112223345666666655442   45666533  22334455444333    3678899999999999999


Q ss_pred             CCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       301 P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      |+.|||+|+||+||..|++.|.+.                    .+.+++|+.|+++|++++.+++..++.++.
T Consensus       311 P~~GqG~~~Ai~Da~~La~~L~~~--------------------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~  364 (413)
T PRK07538        311 PVGSNGASQAILDARALADALAAH--------------------GDPEAALAAYEAERRPATAQIVLANRLNGP  364 (413)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHhhHHHHHHHHHhhhcCh
Confidence            999999999999999999999872                    157899999999999999999999988664

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-42  Score=327.38  Aligned_cols=363  Identities=16%  Similarity=0.158  Sum_probs=247.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhc-ccccCeEEEec
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQH-IQLQGMVVASS   80 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~   80 (409)
                      .+++||+||||||+|+++|+.|+++|++|+|+|+.+.+....++..+++.+.++|+++|+++.+.+.. .++..+.++. 
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~-   82 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI-   82 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE-
Confidence            36799999999999999999999999999999998765555578899999999999999999887633 3455555542 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE---EEEEcCCC-EEecCE
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK---LVNLADGA-VFKTKV  153 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~---~v~~~~g~-~~~ad~  153 (409)
                       .+.....+.+...... ....+.+.+..+.+.|.+.+   ++++++++++|++++.+++.+   .+...+|+ +++||+
T Consensus        83 -~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~  160 (407)
T PRK06185         83 -GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADL  160 (407)
T ss_pred             -CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCE
Confidence             2222223333332222 12234688889999888754   468999999999998877765   34445664 799999


Q ss_pred             EEEcCCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          154 LIGCDGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       154 vV~AdG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.+++....+.. .....  +..+............+.++..++++|.. +.+.+.+...........
T Consensus       161 vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~  237 (407)
T PRK06185        161 VVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALR  237 (407)
T ss_pred             EEECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhh
Confidence            999999999999999887654332 22222  22222221111222345556668889987 555444444332221112


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      ..+.+.    +.+.+....+.+.+.+.... ......+++..     ...++|..+|++|+|||||.++|++|||+|+||
T Consensus       238 ~~~~~~----~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl  308 (407)
T PRK06185        238 AAGLEA----FRERVAELAPELADRVAELKSWDDVKLLDVRV-----DRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAI  308 (407)
T ss_pred             hhhHHH----HHHHHHHhCccHHHHHhhcCCccccEEEEEec-----cccccccCCCeEEEeccccccCcccccchhHHH
Confidence            223333    33333333333333333221 12222333322     133467889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----ch--hHHHHHHHH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DG--KIINFLRDK  385 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~--~~~~~~r~~  385 (409)
                      +||..|++.|.+++...                +..+..|++|+++|++++..++.++..+..    +.  +....+|+.
T Consensus       309 ~Da~~La~~l~~~~~~~----------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~  372 (407)
T PRK06185        309 QDAVAAANILAEPLRRG----------------RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPL  372 (407)
T ss_pred             HHHHHHHHHHHHHhccC----------------CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCch
Confidence            99999999999877541                123489999999999999999999876654    44  778889999


Q ss_pred             HHHHHhhhhh
Q 015331          386 IFSVLLGRLM  395 (409)
Q Consensus       386 ~~~~~~~~~~  395 (409)
                      +|..+-....
T Consensus       373 ~l~~~~~~~~  382 (407)
T PRK06185        373 LLRLLNRLPW  382 (407)
T ss_pred             HHHHHHhChh
Confidence            9886554443

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-41  Score=329.70  Aligned_cols=347  Identities=19%  Similarity=0.147  Sum_probs=243.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+++.+.+.+.+.....+..... 
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~-   80 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT-   80 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc-
Confidence            4899999999999999999999999999999999888888999999999999999999999988776666555432211 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEc--CC-CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLA--DG-AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~--~g-~~~~ad~vV~Ad  158 (409)
                          .+.+.......++ ...+++..+++.|.+.+.  ++++++++++++++.+++++++++.  +| .++++|+||+||
T Consensus        81 ----~~~~~~~~~~~~~-~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgAD  155 (493)
T PRK08244         81 ----RLDFSALDTSSNY-TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGAD  155 (493)
T ss_pred             ----cCCcccCCCCCCc-EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECC
Confidence                1222211111122 346889999999887653  6899999999999988888877764  45 479999999999


Q ss_pred             CCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCC-CCCCCCCh
Q 015331          159 GVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ-DKELEGNP  236 (409)
Q Consensus       159 G~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~  236 (409)
                      |.+|.+|+.+++..... .....+.+.+.....  .......++.++..++++|.+++.+.+.+....... ......+.
T Consensus       156 G~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (493)
T PRK08244        156 GAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDP--PPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTL  233 (493)
T ss_pred             CCChHHHHhcCCCccCCCcceEEEEEEEEecCC--CCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCH
Confidence            99999999998765432 222333333222221  111233344566678899999887666543322111 11123345


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331          237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII  316 (409)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~  316 (409)
                      +++.+.+.+.+...       +..........++..     ....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus       234 ~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~  301 (493)
T PRK08244        234 EELKTSLIRICGTD-------FGLNDPVWMSRFGNA-----TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN  301 (493)
T ss_pred             HHHHHHHHHhhCCC-------CCcCCeeEEEecccc-----eeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence            55555554443210       000011111122221     123457788999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHH
Q 015331          317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIF  387 (409)
Q Consensus       317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~  387 (409)
                      |++.|..++++.                 ..+.+|+.|+++|++++..++..+.....   .++....+|+.+.
T Consensus       302 La~~La~~l~g~-----------------~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~  358 (493)
T PRK08244        302 LGWKLAAAIKGW-----------------APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFTRPGLALRSMLS  358 (493)
T ss_pred             HHHHHHHHHcCC-----------------CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCCchhHHHHHHHH
Confidence            999999987653                 45679999999999999999988765543   4455666777643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=1.1e-41  Score=324.23  Aligned_cols=357  Identities=22%  Similarity=0.264  Sum_probs=251.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-----ceeEEechhHHHHHHHcCCchHHHh-hcccccCeEEEe
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-----GFAITLWTNAWRALDAVGISDSLRQ-QHIQLQGMVVAS   79 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~   79 (409)
                      ||+||||||+|+++|+.|+++|++|+||||.+.++..     ++++.+++++.+.|+++|+++++.+ ...+.....++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            7999999999999999999999999999999876432     4789999999999999999999887 666766666654


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~  156 (409)
                      .....   .+.+.......+...+.++|..+.+.|.+.+.   +++++++++|++++.+++.+.|++.+|.++.+|+||+
T Consensus        81 ~~~~~---~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        81 GGSFG---ALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             CCCCc---eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence            43211   12222111111223457899999999998763   3789999999999988888999999998999999999


Q ss_pred             cCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331          157 CDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       157 AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      |||.+|.+|+.++.+.... ....++...+..+...  ......++.++..++++|.+++...+.+.............+
T Consensus       158 adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (385)
T TIGR01988       158 ADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS  235 (385)
T ss_pred             eCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence            9999999999998664332 3334444433332211  111122333445678899999876665554322111112234


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      ++++.+.+.+.+..+..   ++ ..  ......+++..     ....+|..++|+|+|||||.++|++|||+|+||+||.
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~-~~--~~~~~~~~~~~-----~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~  304 (385)
T TIGR01988       236 DEEFLAELQRAFGSRLG---AI-TL--VGERHAFPLSL-----THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVA  304 (385)
T ss_pred             HHHHHHHHHHHHhhhcC---ce-Ee--ccCcceeechh-----hhhhheecCceEEEecccccCCccccchhhhhHHHHH
Confidence            55555555554432211   10 00  11222333322     1234678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~  391 (409)
                      .|++.|..++...              .....+++|+.|+++|++++..++..++....    .++....+|+..++.+.
T Consensus       305 ~La~~L~~~~~~~--------------~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  370 (385)
T TIGR01988       305 ALAEVLEDARRRG--------------EDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLN  370 (385)
T ss_pred             HHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence            9999999876421              00134789999999999999999999877755    67788888998888654


Q ss_pred             h
Q 015331          392 G  392 (409)
Q Consensus       392 ~  392 (409)
                      .
T Consensus       371 ~  371 (385)
T TIGR01988       371 L  371 (385)
T ss_pred             h
Confidence            3

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=9.4e-42  Score=324.09  Aligned_cols=356  Identities=18%  Similarity=0.188  Sum_probs=246.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCc----ceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVT----GFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.++..    ++++.+++++.++|+++|+++.+.+...+.....+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 999999999876543    46789999999999999999988777666665554432


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                      .. ..  ...+.......+...+.++|..|.+.|.+.+.   +++++++++|++++.+++.++|++.+|.++.||+||+|
T Consensus        81 ~~-~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        81 GH-FG--ATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             CC-Cc--eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence            11 11  11111111111223457899999999998763   67999999999999888889999988889999999999


Q ss_pred             CCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCC-eEEEEEEEcCCCCCCCCCCC
Q 015331          158 DGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQ-TVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~  235 (409)
                      ||.+|.+|+.+++..... ++..++...+....... ...+. ++..+..+.++|..++ ...+++....+........+
T Consensus       158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  235 (382)
T TIGR01984       158 DGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQ-GCAFE-RFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP  235 (382)
T ss_pred             cCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCC-CEEEE-eeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence            999999999998764333 44555555444322211 11222 3334445788999888 44444433221111001223


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      .+++.+.+.+.+.   +.+.++. .  ......+++..     ....+|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus       236 ~~~~~~~~~~~~~---~~~~~~~-~--~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~  304 (382)
T TIGR01984       236 DAEFLAELQQAFG---WRLGKIT-Q--VGERKTYPLKL-----RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVE  304 (382)
T ss_pred             HHHHHHHHHHHHh---hhccCeE-E--cCCccEeecch-----hhhhheecCCEEEEeecccccCCccccchhhhHHHHH
Confidence            3444444444332   2111111 1  11122222221     2334678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~  391 (409)
                      .|++.|......                 ...+++|+.|+++|+++...++.++.....    .++....+|+.+++.+.
T Consensus       305 ~La~~L~~~~~~-----------------~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  367 (382)
T TIGR01984       305 TLAEVLIDARID-----------------LGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALE  367 (382)
T ss_pred             HHHHHHHHhccC-----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            999999876422                 145789999999999999999998876654    56678889999988766


Q ss_pred             hhh
Q 015331          392 GRL  394 (409)
Q Consensus       392 ~~~  394 (409)
                      ...
T Consensus       368 ~~p  370 (382)
T TIGR01984       368 NFP  370 (382)
T ss_pred             cCH
Confidence            433

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=315.86  Aligned_cols=335  Identities=22%  Similarity=0.266  Sum_probs=238.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.++|+||||||+||++|+.|+++|++|+|+||.+.+ ...+.++.+++++.++|+++|+.+.. +.+.+.....++.. 
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~-   82 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR-   82 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC-
Confidence            3579999999999999999999999999999998754 34577889999999999999998764 44444444444432 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      ++..+.....         ....+.+..+.+.|.+.+++..++++++|++++.+++.++|++.+|+++++|+||+|||.+
T Consensus        83 ~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~  153 (386)
T PRK07236         83 DGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR  153 (386)
T ss_pred             CCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            3322211111         1123577889999998888789999999999999888999999999999999999999999


Q ss_pred             hHhHhHh-CCCCCcccCceeEEEeeecCccCC-----CccccceeecCceEEEEEecCCC---------eEEEEEEEcCC
Q 015331          162 SVVAKWL-GFKKPAFAGRSDIRGCTDFKLRHG-----LEPKFQQFLGKGFRYGFLPCNDQ---------TVYWFFNWCPS  226 (409)
Q Consensus       162 s~vr~~l-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~~~~~~~  226 (409)
                      |.+|+.+ +...+.+.+..++.+++.......     ....+..+.+++..+..+|+.++         ...|.+....+
T Consensus       154 S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (386)
T PRK07236        154 STVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAP  233 (386)
T ss_pred             chHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCC
Confidence            9999987 333455666666666543211100     11223344566666777777532         23344433322


Q ss_pred             CCCC--CC---------------CCChhHHHHHHHHHhcC-CCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCc
Q 015331          227 NQDK--EL---------------EGNPDKTKQFVLSKCHD-LPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGN  288 (409)
Q Consensus       227 ~~~~--~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (409)
                      ....  ..               ....+...+.+.+.+.. +++.+..+++......  .+++...     ...+|..+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~gr  306 (386)
T PRK07236        234 AGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPF--VQAIFDL-----EVPRMAFGR  306 (386)
T ss_pred             CccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCch--hhhhhcc-----cCcccccCc
Confidence            2000  00               00123345566665554 7888888887654321  1222211     124678899


Q ss_pred             EEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331          289 VCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM  368 (409)
Q Consensus       289 v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~  368 (409)
                      ++|+|||||.++|+.|||+|+||+||..|+++|....                   .++..+|+.|+++|++++.+++..
T Consensus       307 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-------------------~~~~~al~~Ye~~R~~r~~~~~~~  367 (386)
T PRK07236        307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-------------------GDIDAALAAWEAERLAVGAAIVAR  367 (386)
T ss_pred             EEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-------------------cchHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999998631                   147899999999999999999999


Q ss_pred             hHHhcc
Q 015331          369 AYIVGY  374 (409)
Q Consensus       369 s~~~~~  374 (409)
                      |+.++.
T Consensus       368 s~~~~~  373 (386)
T PRK07236        368 GRRLGA  373 (386)
T ss_pred             HHHHHH
Confidence            977654

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-41  Score=329.97  Aligned_cols=337  Identities=18%  Similarity=0.148  Sum_probs=233.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+++.+.+.+.....++... 
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-   80 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD-   80 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC-
Confidence            3689999999999999999999999999999999988777889999999999999999999998877766665554322 


Q ss_pred             CcccccccccccC---CCCC-ccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEE---cCCCEEecCE
Q 015331           83 CQPASEISFKTKG---NRGG-HEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNL---ADGAVFKTKV  153 (409)
Q Consensus        83 ~~~~~~~~~~~~~---~~~~-~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~---~~g~~~~ad~  153 (409)
                      +. .....+....   ...+ .....+++..+++.|.+.+.  +++++++++|++++++++.+++++   .++++++||+
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~  159 (502)
T PRK06184         81 GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY  159 (502)
T ss_pred             ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence            21 1111111100   0011 12346888899999888763  689999999999999888888877   5566899999


Q ss_pred             EEEcCCCchHhHhHhCCCCCcccCc--eeEEEeeecCccCCCccccceeecCc-eEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331          154 LIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCTDFKLRHGLEPKFQQFLGKG-FRYGFLPCNDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       154 vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      ||+|||.+|.+|+.+++........  ..+......+.  .....+..+.... ..+.++|+.++.. |.+.+..+.. .
T Consensus       160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~  235 (502)
T PRK06184        160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG--LDRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPG-G  235 (502)
T ss_pred             EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec--CCCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCC-c
Confidence            9999999999999998876543221  22222222221  1122233444433 5677889876643 2222222211 1


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      ....+++.+.+.+.+.+......    +  ........+...     ...+++|..+||+|+|||||.++|+.|||||+|
T Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~----~--~~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g  304 (502)
T PRK06184        236 EPDLSADGLTALLAERTGRTDIR----L--HSVTWASAFRMN-----ARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS  304 (502)
T ss_pred             cCCCCHHHHHHHHHHhcCCCCcc----e--eeeeeeeccccc-----eeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence            12334555555555443211100    0  001111112211     123457788999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      |+||..|++.|..++++                  ..+++|+.|+++|++++..+++.+.....
T Consensus       305 i~DA~~LawkLa~vl~g------------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~  350 (502)
T PRK06184        305 VQDAYNLGWKLAAVLAG------------------APEALLDTYEEERRPVAAAVLGLSTELLD  350 (502)
T ss_pred             HHHHHHHHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987764                  44779999999999999999999876554

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=322.34  Aligned_cols=345  Identities=20%  Similarity=0.172  Sum_probs=240.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      |+ ++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..++++++++|+++|+++.+.+.+.......+. 
T Consensus         1 ~~-~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~-   78 (488)
T PRK06834          1 MT-EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA-   78 (488)
T ss_pred             CC-cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee-
Confidence            54 5899999999999999999999999999999998754 34468889999999999999999987755433221110 


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                      .      ..+.+.......+ ..+.+.+..+++.|.+.+.  +++++++++|++++.+++.+.|++.+|.++++|+||+|
T Consensus        79 ~------~~~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgA  151 (488)
T PRK06834         79 A------TRLDISDFPTRHN-YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGC  151 (488)
T ss_pred             e------EecccccCCCCCC-ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEe
Confidence            0      1111111111111 2245778889999987664  67999999999999998899999888888999999999


Q ss_pred             CCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceeecCceEEEEEecC-CCeEEEEEEEcCCCCCCCCCCC
Q 015331          158 DGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCN-DQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      ||.+|.+|+.+|+..+.... ...+...+..+...    .+.....+.....+.|.. ++.+.+.+.....  ....+.+
T Consensus       152 DG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  225 (488)
T PRK06834        152 DGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATGEPT  225 (488)
T ss_pred             cCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCCCCC
Confidence            99999999999987665432 22333323222111    122223333345567776 5544433332222  1112445


Q ss_pred             hhHHHHHHHHHhc-CCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331          236 PDKTKQFVLSKCH-DLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da  314 (409)
                      .+++.+.+.+.+. .+..        ........++..     ...+++|..+||+|+|||||.++|+.|||||++|+||
T Consensus       226 ~~~~~~~l~~~~g~~~~~--------~~~~~~~~~~~~-----~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA  292 (488)
T PRK06834        226 LDDLREALIAVYGTDYGI--------HSPTWISRFTDM-----ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDA  292 (488)
T ss_pred             HHHHHHHHHHhhCCCCcc--------ccceeEEecccc-----ceecccccCCcEEEEeeccccCCccccccccccHHHH
Confidence            5566666665543 1111        111112222221     2345688899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHHHH
Q 015331          315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFSVL  390 (409)
Q Consensus       315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~~~  390 (409)
                      .+|+|.|...+.+.                 ..+.+|++|+++|++.+.+++..+..+..   .++....+|+.++..+
T Consensus       293 ~nLawkLa~vl~g~-----------------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~~~~~~~~lR~~~~~~~  354 (488)
T PRK06834        293 VNLGWKLAQVVKGT-----------------SPESLLDTYHAERHPVAARVLRNTMAQVALLRPDDRTEALRDIVAELL  354 (488)
T ss_pred             HHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Confidence            99999999988763                 56889999999999999999987755533   6777788899887643

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=5.7e-41  Score=319.51  Aligned_cols=367  Identities=21%  Similarity=0.200  Sum_probs=246.2

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC------cceeEEechhHHHHHHHcCCchHHHhh-cccc
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV------TGFAITLWTNAWRALDAVGISDSLRQQ-HIQL   72 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~   72 (409)
                      |+ +++||+||||||+|+++|+.|+++|++|+|+|+.+....      ..+...+++++.++|+++|+++.+.+. ..++
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            44 568999999999999999999999999999999864321      225678999999999999999988653 3344


Q ss_pred             cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEE
Q 015331           73 QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVF  149 (409)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~  149 (409)
                      .....+.+..+.    +.+.......+...+.++|..|.+.|.+.+   ++++++++++|++++.+++.+.|++.++.++
T Consensus        81 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~  156 (391)
T PRK08020         81 RRLETWEWETAH----VVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEI  156 (391)
T ss_pred             ceEEEEeCCCCe----EEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEE
Confidence            444443332221    112111111123345789999999998765   4678999999999998888899999898899


Q ss_pred             ecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCC
Q 015331          150 KTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ  228 (409)
Q Consensus       150 ~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  228 (409)
                      ++|+||+|||.+|.+|+.+++..... +...++...+..+.. .....+..+...+. ..++|..++...+++...+...
T Consensus       157 ~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~~~~~~v~~~~~~~~  234 (391)
T PRK08020        157 QAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP-PGDSTWQQFTPSGP-RAFLPLFDNWASLVWYDSPARI  234 (391)
T ss_pred             EeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC-CCCEEEEEEcCCCC-EEEeECCCCcEEEEEECCHHHH
Confidence            99999999999999999998764322 233444444433322 12233444555544 5678988765443332211111


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331          229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC  308 (409)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~  308 (409)
                      ......+.+++.+.+.+.+   ++.+..+..    .....+++..     ...++|..+|++|+|||||.++|+.|||+|
T Consensus       235 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~~----~~~~~~pl~~-----~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n  302 (391)
T PRK08020        235 RQLQAMSMAQLQQEIAAHF---PARLGAVTP----VAAGAFPLTR-----RHALQYVQPGLALVGDAAHTINPLAGQGVN  302 (391)
T ss_pred             HHHHCCCHHHHHHHHHHHh---hhhccceEe----ccccEeecce-----eehhhhccCcEEEEechhhccCCcccchhH
Confidence            0111223333333333322   222211110    0112233322     124478899999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc--c--chhHHHHHHH
Q 015331          309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG--Y--DGKIINFLRD  384 (409)
Q Consensus       309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~--~--~~~~~~~~r~  384 (409)
                      +||+||..|++.|.+.....              .......+|+.|+++|+++...++..+....  +  ..+.+..+|+
T Consensus       303 ~al~Da~~La~~L~~~~~~~--------------~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~  368 (391)
T PRK08020        303 LGYRDVDALLDVLVNARSYG--------------EAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARN  368 (391)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            99999999999999865421              0113568999999999999988887765443  3  6789999999


Q ss_pred             HHHHHHhhhhhhhhh
Q 015331          385 KIFSVLLGRLMMKIL  399 (409)
Q Consensus       385 ~~~~~~~~~~~~~~~  399 (409)
                      .+|..+-...+.|..
T Consensus       369 ~~l~~~~~~~~~k~~  383 (391)
T PRK08020        369 LGLMAAQRAGVLKRQ  383 (391)
T ss_pred             HHHHHHhcCHHHHHH
Confidence            999977666555543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=1.4e-40  Score=316.15  Aligned_cols=357  Identities=18%  Similarity=0.187  Sum_probs=239.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+  ....++..++++++++|+++|+++.+.+.+.+...+.++.. 
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-   80 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD-   80 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence            579999999999999999999999999999999853  22335566999999999999999999887777777777642 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEE-eCCeEEEEE-cCCC--EEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEE-SGLFKLVNL-ADGA--VFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~-~~~~~~v~~-~~g~--~~~ad~vV  155 (409)
                       +. ...+++....  .+.....+++..+.+.|.+.+  .++++++++++++++. +++.+.|++ .+|+  +++||+||
T Consensus        81 -g~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV  156 (392)
T PRK08243         81 -GR-RHRIDLTELT--GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA  156 (392)
T ss_pred             -CE-EEEecccccc--CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence             22 2334443221  122233556777777777654  3689999999999987 566677777 3564  68999999


Q ss_pred             EcCCCchHhHhHhCCCCCc-ccCc--eeEEEeeecCccCCCccccceee-cCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPA-FAGR--SDIRGCTDFKLRHGLEPKFQQFL-GKGFRYGFLPCNDQTVYWFFNWCPSNQDKE  231 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  231 (409)
                      +|||.+|.+|+.++..... +...  ..+.+... .. .+.... ..+. .++.+.++.|.+++...+++.+......  
T Consensus       157 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  231 (392)
T PRK08243        157 GCDGFHGVSRASIPAGALRTFERVYPFGWLGILA-EA-PPVSDE-LIYANHERGFALCSMRSPTRSRYYLQCPLDDKV--  231 (392)
T ss_pred             ECCCCCCchhhhcCcchhhceecccCceEEEEeC-CC-CCCCCc-eEEeeCCCceEEEecCCCCcEEEEEEecCCCCc--
Confidence            9999999999999764322 2221  22222221 11 111111 1222 3333344444445544444444332211  


Q ss_pred             CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      .....+.+.+.+.+.+.....  ..++ .........+++.     ....++|..+||+|+|||||.++|++|||+|+||
T Consensus       232 ~~~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai  303 (392)
T PRK08243        232 EDWSDERFWDELRRRLPPEDA--ERLV-TGPSIEKSIAPLR-----SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA  303 (392)
T ss_pred             ccCChhHHHHHHHHhcCcccc--cccc-cCccccccceeee-----eceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence            122344455666655542100  0000 0000001111211     1233467789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-------chhHHHHHHH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-------DGKIINFLRD  384 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~r~  384 (409)
                      +||..|++.|...+++                  ..+++|+.|+++|++++.+++..+..+..       ...+...+|+
T Consensus       304 ~Da~~La~~L~~~~~~------------------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (392)
T PRK08243        304 SDVRYLARALVEFYRE------------------GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQL  365 (392)
T ss_pred             HHHHHHHHHHHHHhcc------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Confidence            9999999999987653                  34789999999999999999999877654       5567888999


Q ss_pred             HHHHHHhhhhhh
Q 015331          385 KIFSVLLGRLMM  396 (409)
Q Consensus       385 ~~~~~~~~~~~~  396 (409)
                      ..|..++.....
T Consensus       366 ~~~~~~~~~~~~  377 (392)
T PRK08243        366 AELDYLTSSRAA  377 (392)
T ss_pred             HHHHHHhcCHHH
Confidence            999988877764

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-40  Score=321.13  Aligned_cols=338  Identities=17%  Similarity=0.151  Sum_probs=233.8

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      |+ +.+||+||||||+||++|+.|+++|++|+||||.+.+...+++..+++.++++|+.+|+++.+...+.+......+.
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            54 45799999999999999999999999999999999887788899999999999999999998877666555443332


Q ss_pred             ccCCccccccc--ccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEE
Q 015331           80 SVSCQPASEIS--FKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLI  155 (409)
Q Consensus        80 ~~~~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV  155 (409)
                        .+..+....  +.............+.+..+++.|.+++.  +++++++++|++++.+++++.+.+.+|++++|++||
T Consensus        81 --~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vV  158 (487)
T PRK07190         81 --NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVI  158 (487)
T ss_pred             --CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEE
Confidence              221111100  11111011112346788888888887653  689999999999999888888888888899999999


Q ss_pred             EcCCCchHhHhHhCCCCCcccCceeEE-EeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPAFAGRSDIR-GCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG  234 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      +|||.+|.+|+.+|+..........+. .-.......+..+....+..+...+.++|..++...+++..  +.    ...
T Consensus       159 gADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~----~~~  232 (487)
T PRK07190        159 GADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DT----KDF  232 (487)
T ss_pred             ECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CC----CCC
Confidence            999999999999998766443222111 11112111111112222334444577789887755443322  11    233


Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccC-CCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS-KGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      +.+++.+.+.+.+......      .........+++.     ...+++|. .+||+|+|||||..+|..|||||++|+|
T Consensus       233 t~~~~~~~l~~~~~~~~~~------~~~~~w~s~~~~~-----~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqD  301 (487)
T PRK07190        233 TLEQAIAKINHAMQPHRLG------FKEIVWFSQFSVK-----ESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLAD  301 (487)
T ss_pred             CHHHHHHHHHHhcCCCCCc------eEEEEEEEEeeeC-----cEehhhcCcCCcEEEEecccccCCCccccchhhhHHH
Confidence            4444545554433211110      0111122233332     23455775 7999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      |.+|+|.|..++++.                 ..+..|+.|+++|++.+.+++..+.....
T Consensus       302 A~nL~wkLa~v~~g~-----------------a~~~lLdtY~~eR~p~a~~vl~~t~~~~~  345 (487)
T PRK07190        302 AFNLIWKLNMVIHHG-----------------ASPELLQSYEAERKPVAQGVIETSGELVR  345 (487)
T ss_pred             HHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888763                 45889999999999999999999875543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=9.3e-42  Score=321.25  Aligned_cols=337  Identities=26%  Similarity=0.320  Sum_probs=218.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccC--eEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQG--MVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~~~~~~   81 (409)
                      ++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+.++++++|+++|+++.+.+...+...  ..+....
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            37999999999999999999999999999999999888889999999999999999999998887644332  2222220


Q ss_pred             CCcc------cccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-----CE
Q 015331           82 SCQP------ASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-----AV  148 (409)
Q Consensus        82 ~~~~------~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~  148 (409)
                      .+..      .....+.  ..........+.|..|++.|.+.+.  ++++++++++++++.+++++++.+.++     .+
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~  158 (356)
T PF01494_consen   81 SDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEET  158 (356)
T ss_dssp             TTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEE
T ss_pred             CCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeE
Confidence            0100      0001111  1112334457899999999998763  589999999999999988877665443     26


Q ss_pred             EecCEEEEcCCCchHhHhHhCCCCCcccCc--eeEEEee-ecCccCCCccccceeecCceEEEEEecCC-CeEEEEEEEc
Q 015331          149 FKTKVLIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCT-DFKLRHGLEPKFQQFLGKGFRYGFLPCND-QTVYWFFNWC  224 (409)
Q Consensus       149 ~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~  224 (409)
                      ++||+||+|||.+|.+|+.++...+.....  ..+.... .....................++++|..+ +...+++.+.
T Consensus       159 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (356)
T PF01494_consen  159 IEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLP  238 (356)
T ss_dssp             EEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeee
Confidence            899999999999999999998763322211  1222211 11111111121222334444467899988 3333344343


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCc
Q 015331          225 PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG  304 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G  304 (409)
                      ......  ....+...+.+.+.+..   .+..............+++..     ...++|..+||+|+|||||.++|+.|
T Consensus       239 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAh~~~P~~G  308 (356)
T PF01494_consen  239 FDESKE--ERPEEFSPEELFANLPE---IFGPDLLETEIDEISAWPIPQ-----RVADRWVKGRVLLIGDAAHAMDPFSG  308 (356)
T ss_dssp             TTTTTC--CSTHCHHHHHHHHHHHH---HHHTCHHHHEEEEEEEEEEEE-----EEESSSEETTEEE-GGGTEEE-CCTS
T ss_pred             cccccc--ccccccccccccccccc---ccccccccccccccccccccc-----ccccccccceeEEeccceeeeccccc
Confidence            332221  11222223333333221   111000001122233333322     23446788999999999999999999


Q ss_pred             chhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       305 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      ||+|+||+||..|++.|....++.                 ..+++|+.|+++|++++.++++.+
T Consensus       309 qG~n~Ai~da~~La~~L~~~~~g~-----------------~~~~~l~~Y~~~r~~~~~~~~~~~  356 (356)
T PF01494_consen  309 QGINMAIEDAAALAELLAAALKGE-----------------ASEEALKAYEQERRPRARKAVQFD  356 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTS-----------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHHhcCC-----------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999988753                 567899999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=2.2e-40  Score=328.84  Aligned_cols=350  Identities=18%  Similarity=0.172  Sum_probs=234.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      |.+++||+||||||+||++|+.|+++ |++|+|||+.+.+...+++.+++++++++|+++|+++.+.+.+.++..+.++.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~  108 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK  108 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence            45678999999999999999999995 99999999998888888999999999999999999999988887777777664


Q ss_pred             ccCC--cccccc-cccc-cCCCCCccccccCHHHHHHHHHhhCC--C--CeEEeCceEEEEEEeC---CeEEEEEc----
Q 015331           80 SVSC--QPASEI-SFKT-KGNRGGHEVRSVKRSLLMEALERELP--S--GTIRYSSKVVSVEESG---LFKLVNLA----  144 (409)
Q Consensus        80 ~~~~--~~~~~~-~~~~-~~~~~~~~~~~i~r~~l~~~l~~~~~--~--~~i~~~~~v~~v~~~~---~~~~v~~~----  144 (409)
                      ....  ..+... .... ......+....+++..+++.|.+.+.  +  +.+++++++++++.++   ..++|++.    
T Consensus       109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~  188 (634)
T PRK08294        109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG  188 (634)
T ss_pred             CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence            3211  111000 0000 00111223357889999999988763  2  4788999999998764   34777764    


Q ss_pred             --CC--CEEecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecC--ccCCC-ccccceeecCceEEEEEecCCCe-
Q 015331          145 --DG--AVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFK--LRHGL-EPKFQQFLGKGFRYGFLPCNDQT-  216 (409)
Q Consensus       145 --~g--~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~-  216 (409)
                        +|  ++++||+||+|||.+|.||+.+|+.......... +++.+..  ...+. .....+....+..+.++|..++. 
T Consensus       189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~-~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~  267 (634)
T PRK08294        189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHA-WGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL  267 (634)
T ss_pred             CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccce-EEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence              34  4799999999999999999999886554322222 1222211  11111 11111223455678899998885 


Q ss_pred             EEEEEEEcC---CCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhh-----ccccCCCc
Q 015331          217 VYWFFNWCP---SNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVL-----WGNISKGN  288 (409)
Q Consensus       217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  288 (409)
                      +.+++....   +........+++++.+.+.+.+..+...+.      ....+..+++..+..-++.     ...+..+|
T Consensus       268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gR  341 (634)
T PRK08294        268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVK------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPR  341 (634)
T ss_pred             EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCcee------EEeEEecccccceehhhcccccccccccccCC
Confidence            333333211   111111344566666655554432211111      1112222222222111100     00123689


Q ss_pred             EEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331          289 VCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM  368 (409)
Q Consensus       289 v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~  368 (409)
                      |+|+|||||.++|..|||||++|+||.+|+|.|..++++.                 ..+++|+.|+++|+++++.+++.
T Consensus       342 VfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-----------------a~~~lL~tYe~ERrp~a~~li~~  404 (634)
T PRK08294        342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-----------------SPPELLHTYSAERQAIAQELIDF  404 (634)
T ss_pred             EEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753                 56789999999999999999999


Q ss_pred             hHHhcc
Q 015331          369 AYIVGY  374 (409)
Q Consensus       369 s~~~~~  374 (409)
                      +.....
T Consensus       405 ~~~~~~  410 (634)
T PRK08294        405 DREWST  410 (634)
T ss_pred             HHHHHH
Confidence            876654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=9.3e-40  Score=322.86  Aligned_cols=354  Identities=18%  Similarity=0.212  Sum_probs=237.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.+.+.+......+.. +
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~  100 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR-D  100 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC-C
Confidence            457999999999999999999999999999999998777788999999999999999999998877665543333322 1


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc--CCC-EEecCEEEE
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA--DGA-VFKTKVLIG  156 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~--~g~-~~~ad~vV~  156 (409)
                       .....+...............+++..+++.|.+.+   ++++++++++|++++.+++.+++++.  ++. ++++|+||+
T Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg  179 (547)
T PRK08132        101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA  179 (547)
T ss_pred             -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence             12222222111111111233578889999998765   35799999999999998888876654  444 689999999


Q ss_pred             cCCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceee---cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          157 CDGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFL---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       157 AdG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      |||.+|.+|+.+|+....... ...+..........+ ...+..+.   .++..+++.|..++.+.+.+....... ...
T Consensus       180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  257 (547)
T PRK08132        180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDAD-PEA  257 (547)
T ss_pred             CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCC-chh
Confidence            999999999999886543321 112222122221111 11122221   234455566666664443332222111 111


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      ...++.+.+.+.+.+... ..       ........+.+.     ...+++|..+||+|+|||||.++|+.|||+|+||+
T Consensus       258 ~~~~~~~~~~l~~~~~~~-~~-------~~~~~~~~~~~~-----~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~  324 (547)
T PRK08132        258 EKKPENVIPRVRALLGED-VP-------FELEWVSVYTFQ-----CRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQ  324 (547)
T ss_pred             hcCHHHHHHHHHHHcCCC-CC-------eeEEEEEeeeee-----eeeecccccccEEEEecccccCCCcccccccchHH
Confidence            223334444444333210 00       000011111111     12345788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331          313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS  388 (409)
Q Consensus       313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~  388 (409)
                      ||..|++.|...+++.                 ..+++|+.|+++|++++..+++.+...+.    .++....+|+.++.
T Consensus       325 DA~~LawkLa~vl~g~-----------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  387 (547)
T PRK08132        325 DADNLAWKLALVLRGR-----------------APDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLR  387 (547)
T ss_pred             HHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Confidence            9999999999987753                 46889999999999999999998866654    55666778888776


Q ss_pred             HH
Q 015331          389 VL  390 (409)
Q Consensus       389 ~~  390 (409)
                      ..
T Consensus       388 ~~  389 (547)
T PRK08132        388 LA  389 (547)
T ss_pred             hh
Confidence            44

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=9e-41  Score=317.92  Aligned_cols=356  Identities=17%  Similarity=0.152  Sum_probs=244.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG----IRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g----~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      +.+||+||||||+|+++|+.|+++|    ++|+|+|+.+.+.  ...+++.+++.++++|+++|+++.   ...++..+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~~~~   86 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIH   86 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCcccEEE
Confidence            4679999999999999999999987    4799999986433  345799999999999999999886   334444554


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC---CEEec
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG---AVFKT  151 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~a  151 (409)
                      +......   ....+.......+...+.++|..|.+.|.+.+.  ++++++++++++++.+++++++++.++   ++++|
T Consensus        87 ~~~~~~~---g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a  163 (398)
T PRK06996         87 VSQRGHF---GRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRA  163 (398)
T ss_pred             EecCCCC---ceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEee
Confidence            4322111   111111111112334568999999999998774  578999999999999999999998865   58999


Q ss_pred             CEEEEcCCC-chHhHhHhCCCCC-cccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe---EEEEEEEcCC
Q 015331          152 KVLIGCDGV-NSVVAKWLGFKKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT---VYWFFNWCPS  226 (409)
Q Consensus       152 d~vV~AdG~-~s~vr~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~  226 (409)
                      |+||+|||. +|.+|+.+++... ..++..++++.+..+..+. ...+..+...| .+.++|..++.   ..+++...++
T Consensus       164 ~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G-~~~~lp~~~~~~~~~~~v~~~~~~  241 (398)
T PRK06996        164 RIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEG-PLALLPLGGPRQADYALVWCCAPD  241 (398)
T ss_pred             eEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCCCcEEEEEECCHH
Confidence            999999997 5778888877643 3356667676555433222 22333444444 47788998654   3333333222


Q ss_pred             CCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcch
Q 015331          227 NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQG  306 (409)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G  306 (409)
                      ........+.+.+.+.+.+.+......+   . ..  .....+++.     ....++|..+||+|+|||||.++|+.|||
T Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~-~~--~~~~~~~l~-----~~~~~~~~~grv~LiGDAAH~~~P~~GQG  310 (398)
T PRK06996        242 EAARRAALPDDAFLAELGAAFGTRMGRF---T-RI--AGRHAFPLG-----LNAARTLVNGRIAAVGNAAQTLHPVAGQG  310 (398)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccccCce---E-Ee--cceEEEeee-----cccccceecCCEEEEEhhhccCCcccchh
Confidence            1111122344455566655544321111   0 00  111122222     12234788999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHH
Q 015331          307 GCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFL  382 (409)
Q Consensus       307 ~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~  382 (409)
                      +|+||+||..|+++|..  .+                  ....+|++|+++|++++..++..+..++.    .++....+
T Consensus       311 ~n~ai~Da~~La~~L~~--~~------------------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~  370 (398)
T PRK06996        311 LNLGLRDAHTLADALSD--HG------------------ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHL  370 (398)
T ss_pred             HHHHHHHHHHHHHHHHh--cC------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            99999999999999975  11                  34577999999999999999999987765    66788999


Q ss_pred             HHHHHHHHhhhhhhh
Q 015331          383 RDKIFSVLLGRLMMK  397 (409)
Q Consensus       383 r~~~~~~~~~~~~~~  397 (409)
                      |+.+|..+......|
T Consensus       371 R~~~l~~~~~~~~~k  385 (398)
T PRK06996        371 RGAALTALEFVPPLK  385 (398)
T ss_pred             HhHHHHHHhhCHHHH
Confidence            999998655544443

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=1.3e-39  Score=316.77  Aligned_cols=359  Identities=20%  Similarity=0.205  Sum_probs=241.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+. ......|..+++++.++|+++|+++.+.....++.+..++.. 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~-  110 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH-  110 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence            357999999999999999999999999999999862 122346778999999999999999998887777777766653 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC-----CCCeEEeCceEEEEEEeCC-------eEEEEEcC----
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL-----PSGTIRYSSKVVSVEESGL-------FKLVNLAD----  145 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~-----~~~~i~~~~~v~~v~~~~~-------~~~v~~~~----  145 (409)
                      ++... .+++..     ......+++..+.+.|.+.+     +++++.. .+|+++..+++       +++++..+    
T Consensus       111 ~G~~~-~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~  183 (567)
T PTZ00367        111 KGKQV-KLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDV  183 (567)
T ss_pred             CCCEE-EecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccc
Confidence            23221 222221     12234567888888887755     4677754 47877754432       25555444    


Q ss_pred             -------------------CCEEecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceE
Q 015331          146 -------------------GAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFR  206 (409)
Q Consensus       146 -------------------g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (409)
                                         +++++||+||+|||.+|.+|+.++...+.+.....+.+........+.......+++++..
T Consensus       184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp  263 (567)
T PTZ00367        184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP  263 (567)
T ss_pred             cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence                               4579999999999999999999986655444445555543221112222333456777888


Q ss_pred             EEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc-CCCHHHHHHHHc-CC-CCceeeccccccCchhhhccc
Q 015331          207 YGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH-DLPEQVKAIVEN-TP-LDSILVSPLRYRYPWEVLWGN  283 (409)
Q Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  283 (409)
                      ++++|+++++..+++.+..+...     +.++..+.+.+.+. .+++.+.+.+.. .. ...+...+....++     ..
T Consensus       264 i~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-----~~  333 (567)
T PTZ00367        264 ILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-----AF  333 (567)
T ss_pred             EEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-----cc
Confidence            99999999987776665433211     11223444444333 345555443322 11 12233334433322     24


Q ss_pred             cCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHH----HHHHHhh
Q 015331          284 ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLK----RYATERR  359 (409)
Q Consensus       284 ~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~y~~~r~  359 (409)
                      +..++++|+|||||.++|++|||+|+||+||..|++.|.......         ..+..+...++++|+    +|+++|+
T Consensus       334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~---------~~d~~d~~~v~~aL~~~~~~Y~~~Rk  404 (567)
T PTZ00367        334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLR---------SIDQNEMAEIEDAIQAAILSYARNRK  404 (567)
T ss_pred             CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhccc---------CCCchhHHHHHHHHHHhHHHHHHHhh
Confidence            567899999999999999999999999999999999998643210         001111224566677    9999999


Q ss_pred             hhHHHHHHHhHHhcc--chhHHHHHHHHHHHHHh
Q 015331          360 WRSCELISMAYIVGY--DGKIINFLRDKIFSVLL  391 (409)
Q Consensus       360 ~~~~~~~~~s~~~~~--~~~~~~~~r~~~~~~~~  391 (409)
                      +++..+...|.....  ..   ..+|+..|.++.
T Consensus       405 ~~a~~i~~ls~aL~~lf~~---~~lr~~~~~y~~  435 (567)
T PTZ00367        405 THASTINILSWALYSVFSS---PALRDACLDYFS  435 (567)
T ss_pred             hhHHHHHHHHHHHHHHhCh---HHHHHHHHHHHh
Confidence            999999999977765  22   568888888654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=1e-39  Score=309.19  Aligned_cols=358  Identities=18%  Similarity=0.211  Sum_probs=238.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+||+||||||+|+++|+.|+++|++|+|||+.+.+  ....++..++++++++|+++|+++++...+.+.....+... 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-   80 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD-   80 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence            479999999999999999999999999999999863  22334555899999999999999999887777777766532 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEE-eCCeEEEEEc-CCC--EEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEE-SGLFKLVNLA-DGA--VFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~-~~~~~~v~~~-~g~--~~~ad~vV  155 (409)
                       +. ...+.+.....  ........+..+.+.|.+.+.  ++.++++++++.+.. +++.+.|++. +|+  ++++|+||
T Consensus        81 -~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI  156 (390)
T TIGR02360        81 -GQ-RFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA  156 (390)
T ss_pred             -CE-EEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence             21 23333332211  111113356677777777553  578899998888755 5556677775 775  68999999


Q ss_pred             EcCCCchHhHhHhCCCCCc-ccCc--eeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPA-FAGR--SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDKE  231 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~  231 (409)
                      +|||.+|.+|+.++..... +.+.  ..+.++.....  ... ....+...+..+.++|+.++. ..|++.+......  
T Consensus       157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  231 (390)
T TIGR02360       157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVS-HELIYSNHERGFALCSMRSATRSRYYVQVPLTDKV--  231 (390)
T ss_pred             ECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCC-CceEEEeCCCceEEEeccCCCcceEEEEcCCCCCh--
Confidence            9999999999998654321 2222  23344332111  111 112344445556677775432 2354444322211  


Q ss_pred             CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      .....+.+.+.+.+.+   .+.+.+.+...........++.     ....++|..+|++|+|||||.++|+.|||+|+||
T Consensus       232 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ai  303 (390)
T TIGR02360       232 EDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLR-----SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA  303 (390)
T ss_pred             hhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHH-----hhccccCccCCEEEEEccccCCCCCcCCchhHHH
Confidence            1222333455555544   3344433332211111122221     2234567889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-------chhHHHHHHH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-------DGKIINFLRD  384 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~r~  384 (409)
                      +||..|+++|......                  ..+.+|+.|+++|++++..+++.|+.++.       ...+...++.
T Consensus       304 eDA~~La~~L~~~~~~------------------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  365 (390)
T TIGR02360       304 SDVHYLYEALLEHYQE------------------GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQ  365 (390)
T ss_pred             HHHHHHHHHHHHHhcc------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence            9999999999875432                  56789999999999999999999988754       4677777788


Q ss_pred             HHHHHHhhhhhhh
Q 015331          385 KIFSVLLGRLMMK  397 (409)
Q Consensus       385 ~~~~~~~~~~~~~  397 (409)
                      +-|..++......
T Consensus       366 ~~~~~~~~~~~~~  378 (390)
T TIGR02360       366 AELEYLLGSEAAQ  378 (390)
T ss_pred             HHHHHHhCCHHHH
Confidence            8888887776653

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=2.1e-39  Score=314.26  Aligned_cols=361  Identities=20%  Similarity=0.191  Sum_probs=242.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhh-cccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~   81 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.....+.+..+++++.+.|+++|+++.+... ..+..+..++.  
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~--  119 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK--  119 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--
Confidence            357999999999999999999999999999999876555667899999999999999999988764 34555555543  


Q ss_pred             CCcccccccccccC--CCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe---EEEEEcCCC--EEec
Q 015331           82 SCQPASEISFKTKG--NRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF---KLVNLADGA--VFKT  151 (409)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~---~~v~~~~g~--~~~a  151 (409)
                      ++.. ...+++...  .......+.++|.+|.+.|.+++   ++++++.+ +++++..+++.   +++...+|+  +++|
T Consensus       120 ~g~~-~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A  197 (514)
T PLN02985        120 DGKE-AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA  197 (514)
T ss_pred             CCEE-EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence            2322 122332111  11122345789999999999865   35777766 56666555443   334444665  4579


Q ss_pred             CEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331          152 KVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKE  231 (409)
Q Consensus       152 d~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  231 (409)
                      |+||+|||.+|.+|+.++......  .....++.......+.......+++++..+.++|+++++..+.+....+...  
T Consensus       198 dLVVgADG~~S~vR~~l~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~--  273 (514)
T PLN02985        198 PLTVVCDGCYSNLRRSLNDNNAEV--LSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP--  273 (514)
T ss_pred             CEEEECCCCchHHHHHhccCCCcc--eeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC--
Confidence            999999999999999997654321  1112222211111122223345567777788999998887666655433221  


Q ss_pred             CCCChhHHHHHHHHHh-cCCCHHHHHHHHcC-C-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331          232 LEGNPDKTKQFVLSKC-HDLPEQVKAIVENT-P-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC  308 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~  308 (409)
                       +....+..+++.+.. ...++.+.+.+... . ...+...+....+     ...+..++++|+|||||.++|++|||||
T Consensus       274 -~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~-----~~~~~~~~vvLiGDAaH~~~P~~GQGmn  347 (514)
T PLN02985        274 -SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMS-----ATLSDKKGVIVLGDAFNMRHPAIASGMM  347 (514)
T ss_pred             -CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccccc-----ccccCCCCEEEEecccccCCCCccccHh
Confidence             112334444444433 24455555554321 1 1123233332221     1234568999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-----chhHHHHHH
Q 015331          309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-----DGKIINFLR  383 (409)
Q Consensus       309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-----~~~~~~~~r  383 (409)
                      +|++||..|++.|...-.-              .+.....++|++|+++|++++..+..+|..+..     .+.....+|
T Consensus       348 ~AleDA~vLa~lL~~~~~~--------------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~  413 (514)
T PLN02985        348 VLLSDILILRRLLQPLSNL--------------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMR  413 (514)
T ss_pred             HHHHHHHHHHHHhhhcccc--------------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999873210              013367899999999999999999999977754     456678899


Q ss_pred             HHHHHHHh
Q 015331          384 DKIFSVLL  391 (409)
Q Consensus       384 ~~~~~~~~  391 (409)
                      +..|.++.
T Consensus       414 ~~~f~y~~  421 (514)
T PLN02985        414 QGCYDYLC  421 (514)
T ss_pred             HHHHHHHH
Confidence            99998654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=2e-40  Score=315.59  Aligned_cols=359  Identities=21%  Similarity=0.208  Sum_probs=245.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-----ceeEEechhHHHHHHHcCCchHHHhh-cccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-----GFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~   76 (409)
                      +++||+||||||+|+++|+.|++.|++|+|+|+.+.+...     .+.+.++++++++|+++|+++.+... ..+.....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            3589999999999999999999999999999999876542     34588999999999999999887543 23444555


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV  153 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~  153 (409)
                      ++....    ..+.+.......+...+.+++..+.+.|.+.+.  + ++++ +++|++++.+++.+.|++.+|.+++||+
T Consensus        84 ~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~  158 (388)
T PRK07608         84 VFGDAH----ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL  158 (388)
T ss_pred             EEECCC----ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence            543221    222322222222333457889999999988663  3 6677 9999999988888999999988899999


Q ss_pred             EEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          154 LIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       154 vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      ||+|||.+|.+|+.++...... +...++...+..+.  ........++.++..++++|+.++...+.+...........
T Consensus       159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  236 (388)
T PRK07608        159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER--PHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELL  236 (388)
T ss_pred             EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC--CCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHH
Confidence            9999999999999998765432 22333333333222  11222334456666788999999876554433221111111


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      ..+++++.+.+.+....   .+. .++..  .....+++..     ...++|..+||+++|||||.++|++|||+|+||+
T Consensus       237 ~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~  305 (388)
T PRK07608        237 ALSPEALAARVERASGG---RLG-RLECV--TPAAGFPLRL-----QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLR  305 (388)
T ss_pred             CCCHHHHHHHHHHHHHH---hcC-Cceec--CCcceeecch-----hhhhhhhcCceEEEeccccccCCccccccchhHH
Confidence            22444454444443321   110 11110  0111122221     2234778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331          313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS  388 (409)
Q Consensus       313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~  388 (409)
                      ||..|+++|.......               .....++|++|+++|++++..++..++..+.    .+.....+|+..+.
T Consensus       306 da~~La~~L~~~~~~~---------------~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  370 (388)
T PRK07608        306 DVAALADVLAGREPFR---------------DLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARWLRNAGMA  370 (388)
T ss_pred             HHHHHHHHHHHhhccC---------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            9999999998754211               0123479999999999999999999876655    67788899999998


Q ss_pred             HHhhhh
Q 015331          389 VLLGRL  394 (409)
Q Consensus       389 ~~~~~~  394 (409)
                      .+..-.
T Consensus       371 ~~~~~~  376 (388)
T PRK07608        371 LVGALP  376 (388)
T ss_pred             HHhhCh
Confidence            665433

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=3.9e-40  Score=314.46  Aligned_cols=360  Identities=19%  Similarity=0.169  Sum_probs=245.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCcc-----CCcceeEEechhHHHHHHHcCCchHHHhhcccccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESL-----RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQG   74 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      +++||+||||||+|+++|+.|+++   |++|+||||....     ...++++.+++++.++|+++|+++.+.+.+.+...
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~   81 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH   81 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence            568999999999999999999998   9999999995321     22357899999999999999999999887766655


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT  151 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a  151 (409)
                      ..+.....   .....+.......+...+.++|..+.+.|.+.+   ++++++++++|++++.+++.+.|+++++.++.+
T Consensus        82 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a  158 (395)
T PRK05732         82 IHVSDRGH---AGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTG  158 (395)
T ss_pred             EEEecCCC---CceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence            54432211   111111111111122234678888888887754   367999999999999888889999999888999


Q ss_pred             CEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331          152 KVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       152 d~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      |+||+|||.+|.+|+.++...... .+..++...+..... .....+..+.. +..++++|.++++..+++.+..+....
T Consensus       159 ~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~p~~~g~~~~~~~~~~~~~~~  236 (395)
T PRK05732        159 RLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFERFTE-HGPLALLPMSDGRCSLVWCHPLEDAEE  236 (395)
T ss_pred             CEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEeecC-CCCEEEeECCCCCeEEEEECCHHHHHH
Confidence            999999999999999998764433 344444444332211 11122223333 335778999998866555443221111


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      ....+.+.+.+.+.+.+.   .....+..   ......+++...     ...+|..+|++|+|||||.++|++|||+|+|
T Consensus       237 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~l~~~-----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~a  305 (395)
T PRK05732        237 VLSWSDAQFLAELQQAFG---WRLGRITH---AGKRSAYPLALV-----TAAQQISHRLALVGNAAQTLHPIAGQGFNLG  305 (395)
T ss_pred             HHcCCHHHHHHHHHHHHH---hhhcceee---cCCcceeccccc-----chhhhccCcEEEEeecccccCCccccccchH
Confidence            012233344444444331   11111111   111112222221     2235678999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI  386 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~  386 (409)
                      |+||..|++.|..++.+.          .    ....+++|+.|+++|+++...++..+.....    ...+...+|+..
T Consensus       306 l~Da~~La~~L~~~~~~~----------~----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  371 (395)
T PRK05732        306 LRDVMSLAETLTQALARG----------E----DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLG  371 (395)
T ss_pred             HHHHHHHHHHHHHHHhcC----------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            999999999998876431          0    0123589999999999999999999877654    557888999999


Q ss_pred             HHHHhh
Q 015331          387 FSVLLG  392 (409)
Q Consensus       387 ~~~~~~  392 (409)
                      ++.+..
T Consensus       372 ~~~~~~  377 (395)
T PRK05732        372 LMAMDL  377 (395)
T ss_pred             HHHHcc
Confidence            986665

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=3e-39  Score=319.61  Aligned_cols=338  Identities=21%  Similarity=0.290  Sum_probs=230.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccccc---CeEEEe
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQ---GMVVAS   79 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~---~~~~~~   79 (409)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+++.+.+.+..   ...+..
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~   85 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT   85 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence            46899999999999999999999999999999998887778899999999999999999999988765431   222222


Q ss_pred             ccCCcccccccccccCC------------CCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc
Q 015331           80 SVSCQPASEISFKTKGN------------RGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA  144 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~------------~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~  144 (409)
                      ...+..+..+.+.....            ..+.....+++..+++.|.+.+   ++++++++++|++++.+++++++++.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~  165 (545)
T PRK06126         86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE  165 (545)
T ss_pred             cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence            22333333332221100            1122345688999999998765   46899999999999998887777664


Q ss_pred             C---CC--EEecCEEEEcCCCchHhHhHhCCCCCcccCc-eeEEEeeecCc---cCCCcccccee-ecCceEEEEEecCC
Q 015331          145 D---GA--VFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR-SDIRGCTDFKL---RHGLEPKFQQF-LGKGFRYGFLPCND  214 (409)
Q Consensus       145 ~---g~--~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~  214 (409)
                      +   |+  ++++|+||+|||.+|.+|+.+++........ ..+..++..+.   .......+.++ .+++....++|..+
T Consensus       166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~  245 (545)
T PRK06126        166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDG  245 (545)
T ss_pred             ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECC
Confidence            3   53  6899999999999999999998765433221 11222232221   11112223333 34444455566654


Q ss_pred             CeEEEEEE-EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEec
Q 015331          215 QTVYWFFN-WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAG  293 (409)
Q Consensus       215 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG  293 (409)
                      +. .|.+. +.+...  ....+++.+.+.+.+.+.   ..+...+     .....+.     ......++|..+||+|+|
T Consensus       246 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~i-----~~~~~w~-----~~~~~a~~~~~gRv~L~G  309 (545)
T PRK06126        246 RD-EWLFHQLRGGED--EFTIDDVDARAFVRRGVG---EDIDYEV-----LSVVPWT-----GRRLVADSYRRGRVFLAG  309 (545)
T ss_pred             CC-eEEEEEecCCCC--CCCCCHHHHHHHHHHhcC---CCCCeEE-----Eeecccc-----hhheehhhhccCCEEEec
Confidence            43 34443 322221  123345556666665553   1110000     0001111     112345578899999999


Q ss_pred             cCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331          294 DAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG  373 (409)
Q Consensus       294 DAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~  373 (409)
                      ||||.++|+.|||+|+||+||..|++.|...+++.                 ..+++|+.|+++|++++..+++.+..+.
T Consensus       310 DAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-----------------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~  372 (545)
T PRK06126        310 DAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-----------------AGPALLDSYEAERRPIAARNTDYARRNA  372 (545)
T ss_pred             hhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-----------------CcHHHHhhhHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999877642                 4578999999999999999999987654

>PRK11445 putative oxidoreductase; Provisional

Probab=100.00  E-value=2e-32  Score=255.95  Aligned_cols=328  Identities=17%  Similarity=0.109  Sum_probs=198.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC----CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR----VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||||+++|+.|+++ ++|+|+|+.+.+.    ...|+..+++++.+.|+++|++........+. ....   
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~---   76 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAV---   76 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-ccee---
Confidence            7999999999999999999999 9999999987543    23478899999999999999863211100000 0000   


Q ss_pred             cCCccccccccccc-CCCCCccccccCHHHHHHHHHhhC-CCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEE
Q 015331           81 VSCQPASEISFKTK-GNRGGHEVRSVKRSLLMEALEREL-PSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLI  155 (409)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~-~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV  155 (409)
                            ..+..... ........+.++|..|.+.|.+.. .++++++++.|+.++.+++++.|.+ .+|+  +++||+||
T Consensus        77 ------~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV  150 (351)
T PRK11445         77 ------KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLV  150 (351)
T ss_pred             ------eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEE
Confidence                  01111100 001112234699999999998765 3689999999999998888888876 4564  68999999


Q ss_pred             EcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceee---cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFL---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++.... .....++..++.....   .+.+..++   ..+.+.|.+|..+... ....+ +.      
T Consensus       151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~-~~------  218 (351)
T PRK11445        151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEKHP---VPFYSCIFDNEITDCYSWSISKDGYFI-FGGAY-PM------  218 (351)
T ss_pred             ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCCCC---CCCcceEEeccCCCceEEEeCCCCcEE-ecccc-cc------
Confidence            999999999999865422 1222222322222211   11121221   1234677888765422 11111 11      


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      . +.....+.+.+.+.+....+.+.++..     ....+. ..++.  ......+|+++||||||.++|++|+|++.|++
T Consensus       219 ~-~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~-~~~~~--~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~  289 (351)
T PRK11445        219 K-DGRERFETLKEKLSAFGFQFGKPVKTE-----ACTVLR-PSRWQ--DFVCGKDNAFLIGEAAGFISPSSLEGISYALD  289 (351)
T ss_pred             c-chHHHHHHHHHHHHhcccccccccccc-----cccccC-ccccc--ccccCCCCEEEEEcccCccCCccCccHHHHHH
Confidence            0 111112222222222111111111110     001110 01111  00123589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-chhHHHHHHHHHHHH
Q 015331          313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-DGKIINFLRDKIFSV  389 (409)
Q Consensus       313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-~~~~~~~~r~~~~~~  389 (409)
                      |+..|++.|.+..                      +..++.|++.++.-..++..-  .. . +..+..++|.++|+.
T Consensus       290 sa~~la~~l~~~~----------------------~~~~~~y~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~  342 (351)
T PRK11445        290 SARILSEVLNKQP----------------------EKLNTAYWRKTRKLRLKLFGK--IL-KSPFMYNPALRKLIMRS  342 (351)
T ss_pred             hHHHHHHHHHhcc----------------------cchHHHHHHHHHHHHHHHHHH--Hh-cChhhhhHHHHHHHHHh
Confidence            9999999998732                      456889998877766443322  22 2 555566777777764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=100.00  E-value=5.9e-33  Score=254.56  Aligned_cols=288  Identities=23%  Similarity=0.242  Sum_probs=186.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||+|+++|+.|+++|++|+|+|+.+.++...++..+.+.+.+.+...+..     .........++.. .+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-~~~   74 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFSP-NGD   74 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEcC-CCc
Confidence            6999999999999999999999999999999987766667788888777766554321     1111223333322 221


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~  161 (409)
                      .. .....      ....+.++|..+.+.|.+.+.  +++++++++|+++..+++.+.+.+.++ .++++|+||+|+|.+
T Consensus        75 ~~-~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        75 SV-EIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR  147 (295)
T ss_pred             EE-EeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence            11 11111      223457899999999998764  689999999999998888877766544 579999999999999


Q ss_pred             hHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeec----CceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChh
Q 015331          162 SVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG----KGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPD  237 (409)
Q Consensus       162 s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (409)
                      |.+++.++...........+...+..+...........+.+    ++.+.+++|.+++++.+.+......    ...+. 
T Consensus       148 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~-  222 (295)
T TIGR02032       148 SIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDL-  222 (295)
T ss_pred             hHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCH-
Confidence            99999987664322222233333333221111122223332    3467899999998766655443322    12223 


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHH
Q 015331          238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIIL  317 (409)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~L  317 (409)
                        .+.+.+.+...+.     +..........+.++...    ...++..+||+++|||||+++|++|||+|+||+||..+
T Consensus       223 --~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a  291 (295)
T TIGR02032       223 --KKYLKDFLARRPE-----LKDAETVEVIGAPIPIGR----PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA  291 (295)
T ss_pred             --HHHHHHHHHhCcc-----cccCcEEeeeceeeccCC----CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence              3333333322221     111111111222222222    23366789999999999999999999999999999999


Q ss_pred             HHHH
Q 015331          318 ARCI  321 (409)
Q Consensus       318 a~~l  321 (409)
                      |++|
T Consensus       292 a~~~  295 (295)
T TIGR02032       292 AEVI  295 (295)
T ss_pred             HhhC
Confidence            9864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=8.8e-32  Score=255.37  Aligned_cols=312  Identities=19%  Similarity=0.216  Sum_probs=198.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||||+++|+.|+++|++|+|+|+.. +....|+..+++   ..++++++.+++...  .+.+..++.+.+ .
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~-~   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSR-V   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCC-c
Confidence            699999999999999999999999999999982 223346666665   567788888776543  455566654432 1


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcC------C--CEEecCEE
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLAD------G--AVFKTKVL  154 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~------g--~~~~ad~v  154 (409)
                      . .....+.   ...+ ...++|..|++.|.+++.  +++++.+ +|+++..+++.+.|++.+      +  .+++||+|
T Consensus        74 ~-~~~~~~~---~~~~-~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~V  147 (388)
T TIGR02023        74 P-IKVTIPS---EDGY-VGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVV  147 (388)
T ss_pred             e-eeeccCC---CCCc-eEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEE
Confidence            1 1111110   0111 125899999999998763  6788655 699998888888887653      2  36899999


Q ss_pred             EEcCCCchHhHhHhCCCCCcccCceeEEEeeecCcc-CCCccc-cceee----cCceEEEEEecCCCeEEEEEEEcCCCC
Q 015331          155 IGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLR-HGLEPK-FQQFL----GKGFRYGFLPCNDQTVYWFFNWCPSNQ  228 (409)
Q Consensus       155 V~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~  228 (409)
                      |+|||.+|.+|+.++..... ....++...+..+.. ....+. ...++    .++.+.|++|.++. .........   
T Consensus       148 I~AdG~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~---  222 (388)
T TIGR02023       148 IGADGANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT---  222 (388)
T ss_pred             EECCCCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC---
Confidence            99999999999999876422 112233333322221 111222 22222    34567899999754 333322111   


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331          229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC  308 (409)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~  308 (409)
                         ...+.+++.+.+.+.+. +        ...+.......+++..     ..+++..++++++|||||.++|++|+|++
T Consensus       223 ---~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~ip~~-----~~~~~~~~~v~lvGDAAg~v~P~tG~GI~  285 (388)
T TIGR02023       223 ---HGFDAKQLQANLRRRAG-L--------DGGQTIRREAAPIPMK-----PRPRWDFGRAMLVGDAAGLVTPASGEGIY  285 (388)
T ss_pred             ---CCCCHHHHHHHHHHhhC-C--------CCceEeeeeeEecccc-----ccccccCCCEEEEeccccCcCCcccccHH
Confidence               12234444444444321 1        0000011111122221     12356678999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      .||++|..+++.+.+++..+                  ..+.|++|+++++.........+
T Consensus       286 ~A~~sg~~aa~~i~~~l~~~------------------~~~~L~~Y~~~~~~~~~~~~~~~  328 (388)
T TIGR02023       286 FAMKSGQMAAQAIAEYLQNG------------------DATDLRHYERKFMKLYGTTFRVL  328 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987641                  25679999998887665444443

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=1.6e-31  Score=255.48  Aligned_cols=320  Identities=15%  Similarity=0.151  Sum_probs=196.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .++||+||||||||+++|+.|+++|++|+|+|+... ....|+..++   ...++++|+++.+...  ++.+..++.+.+
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~p~~  111 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMISPSN  111 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEecCCc
Confidence            358999999999999999999999999999999864 3344666665   4667888888766542  344555543322


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe---CCeEEEEEcC-------C--CE
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES---GLFKLVNLAD-------G--AV  148 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~---~~~~~v~~~~-------g--~~  148 (409)
                      .    .+.+...... .....+++|..|++.|.+++.  +++++.+ ++.+++..   ++.+.|++.+       |  .+
T Consensus       112 ~----~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~  185 (450)
T PLN00093        112 V----AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT  185 (450)
T ss_pred             e----EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence            1    2222211111 112235899999999998663  6788765 57777642   3445665532       3  47


Q ss_pred             EecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCcc-CCCcc-ccceeec----CceEEEEEecCCCeEEEEEE
Q 015331          149 FKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLR-HGLEP-KFQQFLG----KGFRYGFLPCNDQTVYWFFN  222 (409)
Q Consensus       149 ~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~----~~~~~~~~p~~~~~~~~~~~  222 (409)
                      ++||+||+|||.+|.+|+.++....  ....++...+..+.. ..... ....+++    ++.+.|++|.++. ....+.
T Consensus       186 v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g  262 (450)
T PLN00093        186 LEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTG  262 (450)
T ss_pred             EEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEE
Confidence            9999999999999999999987532  122222222223221 11112 2233333    5567899999854 333332


Q ss_pred             EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCC
Q 015331          223 WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD  302 (409)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~  302 (409)
                      ....      ..+...+.+.+.+.+.       ..+...+.......+++...     ..++..++++|+|||||.++|+
T Consensus       263 ~~~~------~~~~~~~~~~l~~~~~-------~~l~~~~~~~~~~~~ip~~~-----~~~~~~~~vlLvGDAAg~v~P~  324 (450)
T PLN00093        263 TVVN------KPAIKKYQRATRNRAK-------DKIAGGKIIRVEAHPIPEHP-----RPRRVRGRVALVGDAAGYVTKC  324 (450)
T ss_pred             EccC------CCChHHHHHHHHHHhh-------hhcCCCeEEEEEEEEccccc-----ccceeCCCcEEEeccccCCCcc
Confidence            2111      1122233333332211       11111111122233333321     2255688999999999999999


Q ss_pred             CcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          303 IGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       303 ~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      +|+|++.||.++..+++.+.+++..+              +.+.....|++|+++++.........+
T Consensus       325 tGeGI~~Am~sg~~AAe~i~~~~~~g--------------~~~~s~~~L~~Y~~~~~~~~g~~~~~~  377 (450)
T PLN00093        325 SGEGIYFAAKSGRMCAEAIVEGSENG--------------TRMVDEADLREYLRKWDKKYWPTYKVL  377 (450)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcC--------------CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987541              011235678999987776554444443

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=100.00  E-value=1.7e-31  Score=271.47  Aligned_cols=320  Identities=19%  Similarity=0.188  Sum_probs=205.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcC--CchHHHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVG--ISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~   80 (409)
                      ++|+||||||+||++|+.|+++  |++|+|+|+.+.....|+++.+++++++.|+.++  +...+...........+.. 
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-   79 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE-
Confidence            3899999999999999999998  8999999999887777899999999998888775  2233333222222333321 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .+...     ..    .+.....++|..|.+.|.+++.  +++++++++|++++..            ..++|+||+||
T Consensus        80 -~g~~~-----~~----~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgAD  137 (765)
T PRK08255         80 -KGRRI-----RS----GGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASD  137 (765)
T ss_pred             -CCEEE-----EE----CCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcC
Confidence             11110     00    1122336899999999998764  6899999998776421            25799999999


Q ss_pred             CCchHhHhHhCCC--CCcccCceeEEEeeecCccCCCccc-cc-eeecCce-EEEEEecCCCeEEEEEEEcCCCCC--CC
Q 015331          159 GVNSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPK-FQ-QFLGKGF-RYGFLPCNDQTVYWFFNWCPSNQD--KE  231 (409)
Q Consensus       159 G~~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~--~~  231 (409)
                      |.+|.+|+.+...  .........+..+ ....  .+... +. .....+. ....+|..++..+|++.+..+...  ..
T Consensus       138 G~~S~vR~~~~~~~~~~~~~~~~~~~w~-g~~~--~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~  214 (765)
T PRK08255        138 GLNSRIRTRYADTFQPDIDTRRCRFVWL-GTHK--VFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGL  214 (765)
T ss_pred             CCCHHHHHHHHhhcCCceecCCCceEEe-cCCC--cccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCC
Confidence            9999999976321  1111111111111 1111  01110 00 0012221 234578777766666655322111  11


Q ss_pred             CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCc----EEEeccCCCCCCCCCcchh
Q 015331          232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGN----VCVAGDAFHPMTPDIGQGG  307 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~lvGDAA~~~~P~~G~G~  307 (409)
                      ...+.+...+.+.+.|..+.+.. .++..........+....    .....+|..++    ++|+|||||.++|+.|||+
T Consensus       215 ~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~----~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~  289 (765)
T PRK08255        215 DEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFP----RVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT  289 (765)
T ss_pred             ccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecc----eeccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence            22345566777777776654432 222221110101111111    11234777888    9999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      |+||+||..|+++|....                   ...+++|+.|+++|++++..+++.|+..+.
T Consensus       290 ~~aieDa~~La~~L~~~~-------------------~~~~~al~~ye~~R~~r~~~~~~~s~~~~~  337 (765)
T PRK08255        290 KLALEDAIELARCLHEHP-------------------GDLPAALAAYEEERRVEVLRIQNAARNSTE  337 (765)
T ss_pred             HHHHHHHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999998731                   157899999999999999999999987654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=1.4e-30  Score=246.94  Aligned_cols=318  Identities=17%  Similarity=0.145  Sum_probs=191.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+||||||||+++|+.|+++|++|+|+||...+ ...|+..++   ...++++|+++++...  .+.+..++.+..  
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p~~--   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISPSN--   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhhHhhccCchhHHHh--hhceeEEecCCc--
Confidence            58999999999999999999999999999997643 344666664   3667888888765442  344444443321  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEE---eCCeEEEEE--cC-----C--CEEe
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEE---SGLFKLVNL--AD-----G--AVFK  150 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~---~~~~~~v~~--~~-----g--~~~~  150 (409)
                        ..+.+........+ ...++|..|++.|.+++.  +++++.++ +.+++.   .++.+.|++  .+     |  .+++
T Consensus        73 --~~~~~~~~~~~~~~-~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~  148 (398)
T TIGR02028        73 --IAVDIGRTLKEHEY-IGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE  148 (398)
T ss_pred             --eEEEeccCCCCCCc-eeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence              11222111111111 136899999999998763  67887774 767643   234455553  22     2  3789


Q ss_pred             cCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccC-CCcc-ccceeec----CceEEEEEecCCCeEEEEEEEc
Q 015331          151 TKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRH-GLEP-KFQQFLG----KGFRYGFLPCNDQTVYWFFNWC  224 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~  224 (409)
                      |++||+|||.+|.+|+.++....  .....+...+..+... .... ....+++    ++.+.|++|.++. ....+...
T Consensus       149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~  225 (398)
T TIGR02028       149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV  225 (398)
T ss_pred             eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC
Confidence            99999999999999999986532  1122222222332221 1112 2223332    5567999999854 33333221


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCc
Q 015331          225 PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG  304 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G  304 (409)
                       .     .....    +.+.+.+...   ....+...........+++...     .+.+..++++++|||||.++|++|
T Consensus       226 -~-----~~~~~----~~~~~~l~~~---~~~~~~~~~~~~~~~~~ip~~~-----~~~~~~~~~llvGDAAg~v~P~tG  287 (398)
T TIGR02028       226 -A-----AKPEI----KRLQSGIRAR---AAGKVAGGRIIRVEAHPIPEHP-----RPRRVVGRVALVGDAAGYVTKCSG  287 (398)
T ss_pred             -C-----CCccH----HHHHHhhhhh---hhhccCCCcEEEEEEEeccccc-----cccEECCCEEEEEcCCCCCCcccc
Confidence             1     01112    2233322110   0011111111122233333321     125567899999999999999999


Q ss_pred             chhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       305 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      +|++.||+++..+++.+.+++..+              .....+..|++|+++.+.........+
T Consensus       288 eGI~~A~~sg~~aa~~i~~~~~~~--------------~~~~~~~~l~~Y~~~~~~~~~~~~~~~  338 (398)
T TIGR02028       288 EGIYFAAKSGRMCAEAIVEESRLG--------------GAVTEEGDLAGYLRRWDKEYRPTYRVL  338 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcC--------------CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987642              001245678999987766444433333

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=100.00  E-value=3e-30  Score=244.92  Aligned_cols=322  Identities=21%  Similarity=0.176  Sum_probs=205.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCccee-EEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFA-ITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||||++||+.|++.|++|+|+||.+.++...++ ..+.+..+   +++....... ....+....++.. 
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l---~~l~~~~~~~-i~~~v~~~~~~~~-   76 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRAL---EELIPDFDEE-IERKVTGARIYFP-   76 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhH---HHhCCCcchh-hheeeeeeEEEec-
Confidence            4689999999999999999999999999999999988765444 55555444   3332221111 2233334444333 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~Ad  158 (409)
                      ....  .+..+.      ...+.++|..|+++|.+.+.  +++++.++++..+..+++.+.+.+..+ .++++++||+||
T Consensus        77 ~~~~--~~~~~~------~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~Ad  148 (396)
T COG0644          77 GEKV--AIEVPV------GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDAD  148 (396)
T ss_pred             CCce--EEecCC------CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECC
Confidence            1111  111111      23568999999999998764  689999999999998887766555444 689999999999


Q ss_pred             CCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCcccccee---ecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331          159 GVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQF---LGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG  234 (409)
Q Consensus       159 G~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |.+|.+++.++..... ......+......+. ......+..+   ..++.+.|++|..++.....+...... .. ...
T Consensus       149 G~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~  225 (396)
T COG0644         149 GVNSALARKLGLKDRKPEDYAIGVKEVIEVPD-DGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PS-LSP  225 (396)
T ss_pred             CcchHHHHHhCCCCCChhheeEEeEEEEecCC-CCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cC-CCc
Confidence            9999999999888111 111222222333331 1111111111   355678999999999877777665444 11 111


Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccc-cCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN-ISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      .    . ...+.|...+ .....+......++....++...+.+    . +..+++++|||||++++|++|.|+..||.+
T Consensus       226 ~----~-~~l~~f~~~~-~~~~~~~~~~~~~~~~~~ip~~g~~~----~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~s  295 (396)
T COG0644         226 F----L-ELLERFKEHP-AIRKLLLGGKILEYAAGGIPEGGPAS----RPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKS  295 (396)
T ss_pred             h----H-HHHHHHHhCc-ccchhccCCceEEEeeeecccCCcCC----CccccCCEEEEeccccCCCCcccCcHHHHHHH
Confidence            1    1 2222221111 11222221222333333333333222    3 578899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      |..+|+.+.++...                  . ++.|..|++..+.....-....
T Consensus       296 g~~Aa~~i~~~~~~------------------~-~~~l~~Y~~~~~~~~~~~~~~~  332 (396)
T COG0644         296 GKLAAEAIAEALEG------------------G-EEALAEYERLLRKSLAREDLKS  332 (396)
T ss_pred             HHHHHHHHHHHHHc------------------C-hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998764                  2 6677778887776554444443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.97  E-value=5.2e-29  Score=219.06  Aligned_cols=362  Identities=19%  Similarity=0.181  Sum_probs=257.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhh-cccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~   81 (409)
                      ...||+|||||.+|.++|+.|+|.|.+|+|+||+-....+--|..++|.+...|.++|+.|.++.. ..+..+..++.  
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk--  121 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK--  121 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe--
Confidence            357999999999999999999999999999999976656667889999999999999999988774 45566666654  


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEE-EEeCCe--EEEEEcCCC--EEecCE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSV-EESGLF--KLVNLADGA--VFKTKV  153 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v-~~~~~~--~~v~~~~g~--~~~ad~  153 (409)
                      +++. ..++++.......+..+..+...|.+.|++.+   +++++..++ |.++ ++++-.  ++++.++|+  +..|-+
T Consensus       122 ~gk~-v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApL  199 (509)
T KOG1298|consen  122 DGKE-VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPL  199 (509)
T ss_pred             CCce-eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecce
Confidence            3322 45666665555566778889999999999865   577777664 4444 444422  333444444  567899


Q ss_pred             EEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331          154 LIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE  233 (409)
Q Consensus       154 vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  233 (409)
                      -|+|||..|.+||.+-.+.... -..++.+++......+.....+.++++...+.++|++..+....+-+..+.-..   
T Consensus       200 TvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Ps---  275 (509)
T KOG1298|consen  200 TVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPS---  275 (509)
T ss_pred             EEEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCc---
Confidence            9999999999999995433221 223345555433333445556667777777889999999888887776554322   


Q ss_pred             CChhHHHHHHHHHhc-CCCHHHHHHHHc-CCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          234 GNPDKTKQFVLSKCH-DLPEQVKAIVEN-TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      ....+...++.+... ..++.+++.+.. .....+..-|.+..+     .+.....+++++|||...-||++|.||.-|+
T Consensus       276 i~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mp-----a~~~~~~G~illGDAfNMRHPltggGMtV~l  350 (509)
T KOG1298|consen  276 IANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMP-----ATLNDKKGVILLGDAFNMRHPLTGGGMTVAL  350 (509)
T ss_pred             ccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCC-----CCcCCCCceEEEcccccccCCccCCceEeeh
Confidence            223345566666555 666666554443 333333333333332     2344678999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHh--cc---chhHHHHHHHHH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIV--GY---DGKIINFLRDKI  386 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~--~~---~~~~~~~~r~~~  386 (409)
                      .|...|-+.|.....              -.+.+.+.+.+++|...|++...-+-.++...  .+   .+-....+|...
T Consensus       351 ~Di~lLr~ll~pl~d--------------L~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gC  416 (509)
T KOG1298|consen  351 SDIVLLRRLLKPLPD--------------LSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGC  416 (509)
T ss_pred             hHHHHHHHHhccccc--------------cccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            999999999887322              22356888999999999999877766665333  33   677788889988


Q ss_pred             HHHHh
Q 015331          387 FSVLL  391 (409)
Q Consensus       387 ~~~~~  391 (409)
                      |.++-
T Consensus       417 fdYl~  421 (509)
T KOG1298|consen  417 FDYLK  421 (509)
T ss_pred             HHHHh
Confidence            88653

>PRK10015 oxidoreductase; Provisional

Probab=99.97  E-value=9.9e-29  Score=236.04  Aligned_cols=331  Identities=17%  Similarity=0.166  Sum_probs=189.5

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-ceeEEechhHHHHHHHcCCchHHHhhcccccC--eE
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-GFAITLWTNAWRALDAVGISDSLRQQHIQLQG--MV   76 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~   76 (409)
                      |+ .++||+||||||||+++|+.|+++|++|+|+||.+.++.. .++..+...+.+.+-. ++...- .....+..  +.
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~-~i~~~~~~~~~~   78 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASA-PVERKVTREKIS   78 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccC-CccccccceeEE
Confidence            65 4689999999999999999999999999999999877543 2344444433332210 221100 00011111  12


Q ss_pred             EEeccCCcccccccccccCC-CCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331           77 VASSVSCQPASEISFKTKGN-RGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV  153 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~  153 (409)
                      +.. .++  ...+.+..... ......+.+.|..|++.|.+.+.  +++++.+++|+++..+++.+.....++.+++||+
T Consensus        79 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~  155 (429)
T PRK10015         79 FLT-EES--AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANV  155 (429)
T ss_pred             EEe-CCC--ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCE
Confidence            211 111  11222221111 11123567899999999987663  6899999999999877776654444556799999


Q ss_pred             EEEcCCCchHhHhHhCCCCCcccCc--eeEEEeeecCccCC--------Cccccceeec---Cce--EEEEEecCCCeEE
Q 015331          154 LIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCTDFKLRHG--------LEPKFQQFLG---KGF--RYGFLPCNDQTVY  218 (409)
Q Consensus       154 vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~--~~~~~p~~~~~~~  218 (409)
                      ||+|+|.+|.+++.++.........  .++......+....        ....+.++.+   .+.  ..+++| .++...
T Consensus       156 VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~-~~d~v~  234 (429)
T PRK10015        156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKDSIS  234 (429)
T ss_pred             EEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEE-cCCcEE
Confidence            9999999999999988754332221  22222222221100        0001111111   110  122333 334444


Q ss_pred             EEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCC
Q 015331          219 WFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP  298 (409)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~  298 (409)
                      +.+.+...... ....++..    +++.+ ..++.+.+++......++....++....  ...++...++++++||||++
T Consensus       235 vGv~~~~~~~~-~~~~~~~~----~l~~~-~~~p~~~~~~~~~~~~e~~~~~ip~gg~--~~~~~~~~~g~llvGDAAg~  306 (429)
T PRK10015        235 LGLVCGLGDIA-HAQKSVPQ----MLEDF-KQHPAIRPLISGGKLLEYSAHMVPEGGL--AMVPQLVNDGVMIVGDAAGF  306 (429)
T ss_pred             EEEEEehhhhc-cCCCCHHH----HHHHH-hhChHHHHHhcCCEEEEEeeEEcccCCc--ccCCccccCCeEEEeccccc
Confidence            44333221110 11223332    33444 3456666666554333332222221110  01235678999999999999


Q ss_pred             CCC--CCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhh
Q 015331          299 MTP--DIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWR  361 (409)
Q Consensus       299 ~~P--~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~  361 (409)
                      ++|  ++|+||+.||.++..+|+.+.+++...                +...+.|+.|++..+..
T Consensus       307 v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~----------------d~s~~~l~~Y~~~~~~~  355 (429)
T PRK10015        307 CLNLGFTVRGMDLAIASAQAAATTVIAAKERA----------------DFSASSLAQYKRELEQS  355 (429)
T ss_pred             ccccCccccchhHHHHHHHHHHHHHHHHHhcC----------------CCccccHHHHHHHHHHC
Confidence            995  699999999999999999999988742                23456788998877654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.97  E-value=2e-27  Score=227.34  Aligned_cols=328  Identities=18%  Similarity=0.163  Sum_probs=189.6

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-eeEEechhHHHHHHHcCCchHHHhhcccc------
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-FAITLWTNAWRALDAVGISDSLRQQHIQL------   72 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~------   72 (409)
                      |+ +++||+||||||||+++|+.|+++|++|+|+||.+.++... ++..+.....   +++  ..++... .+.      
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~-~~~~~~~~~   74 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADS-APVERLITH   74 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhc-Ccccceeee
Confidence            65 46999999999999999999999999999999998776432 3333433332   222  1111110 111      


Q ss_pred             cCeEEEeccCCcccccccccccC-CCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEE
Q 015331           73 QGMVVASSVSCQPASEISFKTKG-NRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVF  149 (409)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~  149 (409)
                      ....+... .+.  ..+.+.... .......+.+.|..|++.|.+.+  .+++++.+++|+++..+++.+.+...++.++
T Consensus        75 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i  151 (428)
T PRK10157         75 EKLAFMTE-KSA--MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVI  151 (428)
T ss_pred             eeEEEEcC-CCc--eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEE
Confidence            11112111 111  112221111 11122345789999999998866  3789999999999988777765555667789


Q ss_pred             ecCEEEEcCCCchHhHhHhCCCCCcccCceeE--EEeeecCccCC--------Cccccceeec---Cce--EEEEEecCC
Q 015331          150 KTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDI--RGCTDFKLRHG--------LEPKFQQFLG---KGF--RYGFLPCND  214 (409)
Q Consensus       150 ~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~---~~~--~~~~~p~~~  214 (409)
                      +||+||+|+|.+|.+++.++..........++  ......+....        .......+.+   .+.  ..++++ .+
T Consensus       152 ~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~-~~  230 (428)
T PRK10157        152 EAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT-NE  230 (428)
T ss_pred             ECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEE-cC
Confidence            99999999999999999998764433333332  11122221100        0011111211   110  123333 33


Q ss_pred             CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEecc
Q 015331          215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD  294 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGD  294 (409)
                      +...+.+.+..+.. ......+.    .+.+.+. ..+.+...+......++....++....  ...++...++++++||
T Consensus       231 ~~~svG~~~~~~~~-~~~~~~~~----~~l~~~~-~~p~v~~~~~~~~~~~~~~~~ip~~g~--~~~~~~~~~g~llvGD  302 (428)
T PRK10157        231 NTLSLGLVCGLHHL-HDAKKSVP----QMLEDFK-QHPAVAPLIAGGKLVEYSAHVVPEAGI--NMLPELVGDGVLIAGD  302 (428)
T ss_pred             CeEEEEEEEehHHh-cccCCCHH----HHHHHHH-hCchHHHHhCCCeEHHHHhhHhhcCCc--ccCCceecCCeEEEec
Confidence            33434333322211 11223333    2334442 244455555433222221211111100  0112456799999999


Q ss_pred             CCCCCCC--CCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhH
Q 015331          295 AFHPMTP--DIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRS  362 (409)
Q Consensus       295 AA~~~~P--~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~  362 (409)
                      ||++++|  ++|+|++.||.++..+|+.+.++++.+                +...+.|+.|++..+...
T Consensus       303 AAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~----------------~~s~~~l~~Y~~~l~~~~  356 (428)
T PRK10157        303 AAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD----------------DFSKQKLAEYRQHLESGP  356 (428)
T ss_pred             ccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC----------------CcchhhHHHHHHHHHHhH
Confidence            9999998  599999999999999999999988752                245567899998766654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.96  E-value=2.3e-27  Score=225.75  Aligned_cols=304  Identities=19%  Similarity=0.184  Sum_probs=181.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP   85 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      ||+||||||||+++|+.|++.|++|+|+|+.+.... .....++..   .++++++.+.+.   ..+.....+...+...
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   73 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVE---HVWPDVYEYRFPKQPR   73 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHh---hcCCCceEEecCCcch
Confidence            799999999999999999999999999999875432 122333332   234444322221   1122212111111110


Q ss_pred             cccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           86 ASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                        .         .++....+++..|.+.|.+.+.  +++++ .++|+.++.+ ++.+.|++.+|.+++|++||+|+|.+|
T Consensus        74 --~---------~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        74 --K---------LGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             --h---------cCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence              0         0123336899999999988664  45664 6688888877 667888888888899999999999999


Q ss_pred             HhHhHhCCCCCcccCceeEEEe-eecCccC-CCcc-ccceee-c--------Cce--EEEEEecCCCeEEEEEEEcCCCC
Q 015331          163 VVAKWLGFKKPAFAGRSDIRGC-TDFKLRH-GLEP-KFQQFL-G--------KGF--RYGFLPCNDQTVYWFFNWCPSNQ  228 (409)
Q Consensus       163 ~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~-~--------~~~--~~~~~p~~~~~~~~~~~~~~~~~  228 (409)
                      .+++......   .+.....++ +..+... .... .+..+. .        ...  +.+++|.++++..+.......  
T Consensus       142 ~~~~~~~~~~---~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~--  216 (388)
T TIGR01790       142 LVQYVRFPLN---VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLAD--  216 (388)
T ss_pred             hcccccCCCC---ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccC--
Confidence            6643321111   111122222 2222111 1111 111111 0        112  678899998875443221111  


Q ss_pred             CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331          229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC  308 (409)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~  308 (409)
                        ....+.+.+++.+.+.+........+++    ..+....|+....+       ...+|++++|||||.++|++|+|++
T Consensus       217 --~~~~~~~~~~~~l~~~~~~~g~~~~~i~----~~~~~~iP~~~~~~-------~~~~rv~liGdAAg~~~P~tG~Gi~  283 (388)
T TIGR01790       217 --RPALPRDRLRQRILARLNAQGWQIKTIE----EEEWGALPVGLPGP-------FLPQRVAAFGAAAGMVHPTTGYSVA  283 (388)
T ss_pred             --CCCCCHHHHHHHHHHHHHHcCCeeeEEE----eeeeEEEecccCCC-------ccCCCeeeeechhcCcCCcccccHH
Confidence              1223456666666666543332211111    11222334322211       2568999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHH
Q 015331          309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCE  364 (409)
Q Consensus       309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~  364 (409)
                      .|+++|..|++.|.+++..                  ..+.+++.|++..+++...
T Consensus       284 ~al~~a~~la~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       284 RALSDAPGLAAAIAQALCQ------------------SSELATAAWDGLWPTERRR  321 (388)
T ss_pred             HHHHHHHHHHHHHHHHhcc------------------CHHHHHHHHHHhchHHHHH
Confidence            9999999999999998764                  3467788887655554433

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.96  E-value=9.2e-29  Score=219.75  Aligned_cols=361  Identities=21%  Similarity=0.237  Sum_probs=240.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCcc--C-------CcceeEEechhHHHHHHHcCCchHHHh-hc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESL--R-------VTGFAITLWTNAWRALDAVGISDSLRQ-QH   69 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~--~-------~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~   69 (409)
                      .+||+||||||+|+++|..|...    .++|.|+|....+  .       ...+-..+++.++..++.+|+|+.+.. .+
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~  115 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY  115 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence            68999999999999999999853    5799999988332  1       122456678899999999999998876 45


Q ss_pred             ccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHh-----hCCCCeEEeCceEEEEEEe--------C
Q 015331           70 IQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER-----ELPSGTIRYSSKVVSVEES--------G  136 (409)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~-----~~~~~~i~~~~~v~~v~~~--------~  136 (409)
                      .++..+..++....   ..+.+.......+ ..+++....+...|+.     ..+++++..+.++.++...        +
T Consensus       116 ~~~~~~~v~Ds~s~---a~I~~~~d~~~~d-~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~  191 (481)
T KOG3855|consen  116 QKFSRMLVWDSCSA---ALILFDHDNVGID-MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG  191 (481)
T ss_pred             ccccceeeecccch---hhhhhcccccccc-ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence            56666666543322   3333433322211 2345656556666652     3357899999999888652        2


Q ss_pred             CeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCc-cCCCccccceeecCceEEEEEecCC
Q 015331          137 LFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKL-RHGLEPKFQQFLGKGFRYGFLPCND  214 (409)
Q Consensus       137 ~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~  214 (409)
                      ....+++.+|..+.+|++|+|||.+|.+|+..+++.... +.++++++...... .......|+.|.+.|+ +.++|+.+
T Consensus       192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~d  270 (481)
T KOG3855|consen  192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLSD  270 (481)
T ss_pred             ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeeccccc
Confidence            346688899999999999999999999999999887665 56666676666554 3334567888888887 78999998


Q ss_pred             CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc-CCCH-----H----H-------HHHHHcCCC-------C------
Q 015331          215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH-DLPE-----Q----V-------KAIVENTPL-------D------  264 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~----~-------~~~~~~~~~-------~------  264 (409)
                      +.....+...+.........+++.+-..+...|. +.+.     .    .       ..++.....       .      
T Consensus       271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~  350 (481)
T KOG3855|consen  271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG  350 (481)
T ss_pred             ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence            8765555555444433345555555555544443 1110     0    0       011111110       0      


Q ss_pred             --ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchh
Q 015331          265 --SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKE  342 (409)
Q Consensus       265 --~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~  342 (409)
                        ....+|+.+.     .++.|+.+|+.++|||||.+||+.|||.|+++.|...|...|.++...+          .   
T Consensus       351 dksRa~FPLgf~-----ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g----------~---  412 (481)
T KOG3855|consen  351 DKSRAQFPLGFG-----HADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSG----------L---  412 (481)
T ss_pred             ccceeecccccc-----cHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhc----------c---
Confidence              0112222222     2347889999999999999999999999999999999999999988753          1   


Q ss_pred             hhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331          343 EFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS  388 (409)
Q Consensus       343 ~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~  388 (409)
                       +-....-|+.|+++|.+....+.-.......    ..+.+..+|.++|.
T Consensus       413 -DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~  461 (481)
T KOG3855|consen  413 -DLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ  461 (481)
T ss_pred             -cccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence             2355677899999998877665555433322    33444444444444

>PLN02697 lycopene epsilon cyclase

Probab=99.95  E-value=3.2e-25  Score=214.02  Aligned_cols=314  Identities=18%  Similarity=0.206  Sum_probs=192.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||||+++|..|++.|++|+|+|+......   ..+++.   ..++.+|+.+.+..   .+....++.. ++
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~---~w~~~~v~~~-~~  177 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEH---VWRDTIVYLD-DD  177 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHh---hcCCcEEEec-CC
Confidence            58999999999999999999999999999998643222   222332   35677777554432   1223333322 11


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ... .  .       ...+..++|..|.+.|.+++.  ++++ .+++|++++.+++.+. +.+.+|.+++|++||+|||.
T Consensus       178 ~~~-~--~-------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~  246 (529)
T PLN02697        178 KPI-M--I-------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGA  246 (529)
T ss_pred             cee-e--c-------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCc
Confidence            111 0  0       111225899999999998764  5676 7789999988776655 45677888999999999999


Q ss_pred             chHhHhHhCCC--CCcccCceeEEEeeecCccCCCccccceeec---------------CceEEEEEecCCCeEEEEEEE
Q 015331          161 NSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG---------------KGFRYGFLPCNDQTVYWFFNW  223 (409)
Q Consensus       161 ~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~  223 (409)
                      +|.  +.++..  .+....+.++.....+.. .+.++....+++               ...+.|++|.++++.++--++
T Consensus       247 ~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~-~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~  323 (529)
T PLN02697        247 ASG--RLLQYEVGGPRVCVQTAYGVEVEVEN-NPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC  323 (529)
T ss_pred             Chh--hhhccccCCCCcccEEEEEEEEEecC-CCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee
Confidence            993  333322  122233444333334332 122222222221               124688999999987763333


Q ss_pred             cCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCC
Q 015331          224 CPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDI  303 (409)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~  303 (409)
                      ....    ...+.+.+++.+.+.+........++    ...+....|+..  +.+    . ..++++++||||+.++|.+
T Consensus       324 l~~~----~~l~~~~l~~~L~~~l~~~Gi~~~~i----~~~E~g~iPm~g--~~~----~-~~~~vl~vG~AAG~vhPsT  388 (529)
T PLN02697        324 LASK----DAMPFDLLKKRLMSRLETMGIRILKT----YEEEWSYIPVGG--SLP----N-TEQKNLAFGAAASMVHPAT  388 (529)
T ss_pred             eccC----CCCCHHHHHHHHHHHHHhCCCCcceE----EEEEeeeecCCC--CCc----c-cCCCeeEeehhhcCCCCch
Confidence            2111    12335566677776665332211111    112333444422  222    2 2578999999999999999


Q ss_pred             cchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHH
Q 015331          304 GQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSC  363 (409)
Q Consensus       304 G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~  363 (409)
                      |.|+..++.+|..+|+.+.++++...+++.       ....+.....++.|++.+.....
T Consensus       389 Gy~v~~~l~~A~~~A~~ia~~l~~~~~~~~-------~~~~~~~~~~l~~~~~lw~~e~~  441 (529)
T PLN02697        389 GYSVVRSLSEAPKYASVIARILKNVSSGGK-------LGTSNSSNISMQAWNTLWPQERK  441 (529)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHhhCCccccc-------cccccchHHHHHHHHHhChHHHH
Confidence            999999999999999999999875300000       00013567788888877665443

>PLN02463 lycopene beta cyclase

Probab=99.95  E-value=5.5e-25  Score=209.42  Aligned_cols=286  Identities=19%  Similarity=0.225  Sum_probs=179.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||||+++|..|+++|++|+|+|+.+..... ++.+++   .+.++.+|+.+.+... .  ....++.....
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p-~~~g~w---~~~l~~lgl~~~l~~~-w--~~~~v~~~~~~  100 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP-NNYGVW---VDEFEALGLLDCLDTT-W--PGAVVYIDDGK  100 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc-cccchH---HHHHHHCCcHHHHHhh-C--CCcEEEEeCCC
Confidence            479999999999999999999999999999997643211 111211   3457778886665432 1  22222222111


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      ..  ..         ......++|..|.+.|.+++.  +++++ ..+|++++..++.+.|++++|.+++||+||+|||.+
T Consensus       101 ~~--~~---------~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~  168 (447)
T PLN02463        101 KK--DL---------DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS  168 (447)
T ss_pred             Cc--cc---------cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence            10  00         112236899999999988764  56765 579999999888899999999899999999999999


Q ss_pred             hHhHhHhCCCCCcccCceeEEEe-eecCccCCCccccceee-------c-----------CceEEEEEecCCCeEEEEEE
Q 015331          162 SVVAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQFL-------G-----------KGFRYGFLPCNDQTVYWFFN  222 (409)
Q Consensus       162 s~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~p~~~~~~~~~~~  222 (409)
                      |.+.+.   ..+...+....++. ..+.. ++.+.....++       +           ...+.+++|.++++++...+
T Consensus       169 s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT  244 (447)
T PLN02463        169 RCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET  244 (447)
T ss_pred             cCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence            987542   22222333222332 23222 11121111110       0           02367899999997554333


Q ss_pred             EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCC
Q 015331          223 WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD  302 (409)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~  302 (409)
                      .....    ...+.+.+++.+.+.+...+-...++    ...+....|+....+       ...++++++||||+.++|.
T Consensus       245 ~l~s~----~~~~~~~lk~~L~~~l~~~Gi~~~~i----~~~E~~~IPmg~~~~-------~~~~~~~~~G~aag~v~p~  309 (447)
T PLN02463        245 SLVAR----PGLPMDDIQERMVARLRHLGIKVKSV----EEDEKCVIPMGGPLP-------VIPQRVLGIGGTAGMVHPS  309 (447)
T ss_pred             eeecC----CCCCHHHHHHHHHHHHHHCCCCccee----eeeeeeEeeCCCCCC-------CCCCCEEEecchhcCcCCC
Confidence            21111    12234566666666654333211111    112223334432211       1357899999999999999


Q ss_pred             CcchhhhHhhHHHHHHHHHHHHhcC
Q 015331          303 IGQGGCAALEDGIILARCIAEASTE  327 (409)
Q Consensus       303 ~G~G~~~al~da~~La~~l~~~~~~  327 (409)
                      +|.|+..++..|..+|+.+.++++.
T Consensus       310 tG~~i~~~~~~~~~~a~~~~~~~~~  334 (447)
T PLN02463        310 TGYMVARTLAAAPIVADAIVEYLGS  334 (447)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.94  E-value=4.4e-25  Score=206.73  Aligned_cols=303  Identities=16%  Similarity=0.098  Sum_probs=175.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ||+|||||+||+++|+.|++.  |++|+|+|+.+..... ....++.....-.... ..+.+  ....+....+..... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~-   75 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY-   75 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence            899999999999999999987  9999999998743321 1222221111000000 00111  112222333322111 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                 ....++.+..+++.+|.+.+.+.+... ++++++|+.+  +++++++  .+|.+++|++||+|+|.+|.
T Consensus        76 -----------~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        76 -----------RRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             -----------hhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCC
Confidence                       111112345899999999999877543 8889999988  3444444  78889999999999999874


Q ss_pred             hHhHhCCCCCcccCceeEEEe-eecCccCCCcccccee---e---cCc-eEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331          164 VAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQF---L---GKG-FRYGFLPCNDQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       164 vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~---~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      ...        +.+..++.|+ +....+  +++....+   .   ..+ .+.+++|.++++.+|-.++..+.    ...+
T Consensus       140 ~~~--------~~~~Q~f~G~~~r~~~p--~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~----~~l~  205 (370)
T TIGR01789       140 AHL--------KGGFQVFLGREMRLQEP--HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD----PLLD  205 (370)
T ss_pred             ccc--------cceeeEEEEEEEEEcCC--CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC----CCCC
Confidence            211        1233333333 233322  22222111   1   233 34666999999988865554332    1334


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      .+.+++.+.+.+...+....++++    .+....|+....+..  ......++++++|||||.++|.+|+|++.++++|.
T Consensus       206 ~~~l~~~l~~~~~~~g~~~~~i~~----~e~g~iPm~~~~~~~--~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~  279 (370)
T TIGR01789       206 RNALSQRIDQYARANGWQNGTPVR----HEQGVLPVLLGGDFS--AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENAD  279 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEE----eeeeEEeeecCCCcc--cccccCCceeeeecccccccccccccHHHHHHHHH
Confidence            555666665554322222222111    122234432211000  00012567999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM  368 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~  368 (409)
                      .|++.+..  .+                 ....+++..|...|+.+.....-+
T Consensus       280 ~la~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
T TIGR01789       280 ALAAQPDL--SS-----------------EQLAAFIDSRARRHWSKTGYYRLL  313 (370)
T ss_pred             HHHhccCc--Cc-----------------cchhhhhhHHHHHHHHHhHHHHHH
Confidence            99998851  11                 144456788888877776644443

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.94  E-value=3.3e-25  Score=212.32  Aligned_cols=319  Identities=19%  Similarity=0.183  Sum_probs=189.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC---CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchH--HHhhcccc-cCeEEEe
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG---IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS--LRQQHIQL-QGMVVAS   79 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~-~~~~~~~   79 (409)
                      ||+|||||+||.++|..|++++   ++|+|||+...++ .+.|.+..|....+++.+|+.+.  +.+..... .++.+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999998   8999999887654 46788899999999999999876  55543333 3555544


Q ss_pred             ccCCcccccccccc-------------------------------------------cC---CCCCccccccCHHHHHHH
Q 015331           80 SVSCQPASEISFKT-------------------------------------------KG---NRGGHEVRSVKRSLLMEA  113 (409)
Q Consensus        80 ~~~~~~~~~~~~~~-------------------------------------------~~---~~~~~~~~~i~r~~l~~~  113 (409)
                      +.........+|..                                           ..   .......++++|..|.+.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence            33211111111111                                           00   001223468999999999


Q ss_pred             HHhhC--CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHhHhH-hCCCCCcccCce-eEEEee-e
Q 015331          114 LEREL--PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFKKPAFAGRS-DIRGCT-D  186 (409)
Q Consensus       114 l~~~~--~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~vr~~-lg~~~~~~~~~~-~~~~~~-~  186 (409)
                      |++.+  .|++++.+ +|+++..++++  ..|++.+|.+++||++|+|+|..|.+.+. ++.......... +-+++. .
T Consensus       160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~  238 (454)
T PF04820_consen  160 LRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ  238 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred             HHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence            99876  37888887 47777766554  46888899999999999999999988665 333322222222 111111 2


Q ss_pred             cCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCce
Q 015331          187 FKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSI  266 (409)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (409)
                      .+......+.......+.+++|.+|+.++... .+.+.....      ++++..+.+.+.+.....        .  .. 
T Consensus       239 ~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~~~~--------~--~~-  300 (454)
T PF04820_consen  239 VPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGGSPE--------A--EP-  300 (454)
T ss_dssp             EE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTCHCT--------T--SC-
T ss_pred             cCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcchhhh--------c--ch-
Confidence            22222233333344456678999999998766 555544322      333334445444431110        0  00 


Q ss_pred             eeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhch
Q 015331          267 LVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR  346 (409)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~  346 (409)
                      ...++...     ...+...+|+++|||||++++|+.++|+.+++..+..|++.|...                    ..
T Consensus       301 ~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~--------------------~~  355 (454)
T PF04820_consen  301 RHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD--------------------DF  355 (454)
T ss_dssp             EEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT--------------------TC
T ss_pred             hhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC--------------------CC
Confidence            11111111     123556789999999999999999999999999888888877652                    12


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHh
Q 015331          347 NEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       347 ~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      .+.++++|++..+.....+.++-
T Consensus       356 ~~~~~~~Yn~~~~~~~~~~~~fi  378 (454)
T PF04820_consen  356 SPAALDRYNRRMRREYERIRDFI  378 (454)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            36688999988887776665553

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.92  E-value=1.6e-22  Score=190.35  Aligned_cols=277  Identities=21%  Similarity=0.188  Sum_probs=178.0

Q ss_pred             cEEEECCCHHHHHHHHHH--HHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            6 DIVIVGAGIAGLTTSLAL--HRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L--~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ||+||||||||+++|+.|  ++.|.+|+|+|+++... ...+...++......      .+.+...  .+....+.....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v~~--~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLVSH--RWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHHhe--ecCceEEEeCCC
Confidence            899999999999999999  77899999999987651 122233333222111      1222222  223444443322


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .....           .+.+.+|++..|.+.|.+++. ++.+..+++|++|+.+++.+.|.+++|.+++|++||+|+|..
T Consensus        73 ~~~~~-----------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~  141 (374)
T PF05834_consen   73 SRILI-----------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS  141 (374)
T ss_pred             ceEEc-----------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence            11110           123448999999999999876 567888999999999999899999999999999999999976


Q ss_pred             hHhHhHhCCCCCcccCceeEEEe-eecCccCCCcccccee---e-----cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          162 SVVAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQF---L-----GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       162 s~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +...+.        .+...+.|+ +....+ .+++....+   .     ....+++++|.++++..+..++....    .
T Consensus       142 ~~~~~~--------~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~----~  208 (374)
T PF05834_consen  142 SPKARP--------LGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR----P  208 (374)
T ss_pred             cccccc--------cccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC----C
Confidence            652111        122222332 333322 122222222   1     22357889999999877765554432    1


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      ..+.+.+++.+.+.+........++++    .+....|+....+.     ....++++.+|+|++.++|.+|.++..+++
T Consensus       209 ~~~~~~~~~~l~~~l~~~g~~~~~i~~----~E~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~  279 (374)
T PF05834_consen  209 ALPEEELKARLRRYLERLGIDDYEILE----EERGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQR  279 (374)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCceeEEE----eecceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence            245666777777776543333222222    23344555222222     224667999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 015331          313 DGIILARCIAE  323 (409)
Q Consensus       313 da~~La~~l~~  323 (409)
                      .|..+|+.|.+
T Consensus       280 ~a~~ia~~l~~  290 (374)
T PF05834_consen  280 QADAIADALAK  290 (374)
T ss_pred             HHHHHHHHHhh
Confidence            99999998886

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.83  E-value=1.5e-18  Score=150.45  Aligned_cols=219  Identities=19%  Similarity=0.112  Sum_probs=155.1

Q ss_pred             ecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC
Q 015331          150 KTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD  229 (409)
Q Consensus       150 ~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  229 (409)
                      .|.++|+|||..|.+|+.+...  .......++|+.-.....+....-+.++++...+.+++++.++....+-+..+...
T Consensus         1 ~A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P   78 (276)
T PF08491_consen    1 FAPLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP   78 (276)
T ss_pred             CCCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence            3789999999999999999733  33445556666544444455566677888877899999999998888777644221


Q ss_pred             CCCCCChhHHHHHHHHHhc-CCCHHHHHHHHc-CCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchh
Q 015331          230 KELEGNPDKTKQFVLSKCH-DLPEQVKAIVEN-TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGG  307 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~  307 (409)
                         ..+..++++++++.+. .+++.+++.+.. .....+...|....++.     ....++++++|||++..||++|+||
T Consensus        79 ---~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGM  150 (276)
T PF08491_consen   79 ---SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGM  150 (276)
T ss_pred             ---CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccch
Confidence               1234566777776665 666666554443 22233334444433332     3356889999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh--HHhcc--chhHHHHHH
Q 015331          308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA--YIVGY--DGKIINFLR  383 (409)
Q Consensus       308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s--~~~~~--~~~~~~~~r  383 (409)
                      +.|+.|+..|++.|...-              +-.+.+.+.++++.|+.+|++...-+.-++  +...|  .+..+..+|
T Consensus       151 TVAl~Dv~lL~~lL~~~~--------------dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr  216 (276)
T PF08491_consen  151 TVALNDVVLLRDLLSPIP--------------DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALR  216 (276)
T ss_pred             hhHHHHHHHHHHHHhhhc--------------CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999861              111245788999999999999887655554  33344  667778999


Q ss_pred             HHHHHHHhh
Q 015331          384 DKIFSVLLG  392 (409)
Q Consensus       384 ~~~~~~~~~  392 (409)
                      +..|.++..
T Consensus       217 ~gcf~Yf~~  225 (276)
T PF08491_consen  217 QGCFKYFQL  225 (276)
T ss_pred             HHHHHHHHc
Confidence            999997643

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.59  E-value=9.4e-15  Score=131.73  Aligned_cols=155  Identities=26%  Similarity=0.283  Sum_probs=103.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-------ceeEEechhHHHHHHHcCCc-hHHHhhcccc--
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-------GFAITLWTNAWRALDAVGIS-DSLRQQHIQL--   72 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~--   72 (409)
                      +.+||+||||||||++||..++++|.+|+|||+.+.+...       .|.+.-.....+++.+..-. ..+......+  
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            4689999999999999999999999999999999876432       23332222233444443211 1111111111  


Q ss_pred             ---------cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEE
Q 015331           73 ---------QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLV  141 (409)
Q Consensus        73 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v  141 (409)
                               .++..+....+..     |+.          .-.-+.+.++|..++.  +++++.+++|.+++.++....+
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~-----Fp~----------sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l  146 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRM-----FPD----------SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRL  146 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCcee-----cCC----------ccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEE
Confidence                     1223322222211     110          1344677788877663  7999999999999999999999


Q ss_pred             EEcCCCEEecCEEEEcCCCchH-----------hHhHhCCCC
Q 015331          142 NLADGAVFKTKVLIGCDGVNSV-----------VAKWLGFKK  172 (409)
Q Consensus       142 ~~~~g~~~~ad~vV~AdG~~s~-----------vr~~lg~~~  172 (409)
                      .+.+|++++||.+|.|+|..|.           +.+++|...
T Consensus       147 ~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         147 DTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             EcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            9999999999999999997773           566776653

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.58  E-value=2.7e-13  Score=128.64  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+...+.+.+  .+++++++++|++++.+++.+.|+++++ ++.+|.||.|+|.++.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence            455566666665443  3789999999999998888888888877 6999999999999864

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.56  E-value=6.8e-14  Score=124.15  Aligned_cols=133  Identities=23%  Similarity=0.221  Sum_probs=91.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--cee-----EEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--GFA-----ITLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      ++||+||||||||+++|+.|++.|++|+|+|+.+.+...  +.+     ..+......+|+++|+..             
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~-------------   91 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY-------------   91 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc-------------
Confidence            589999999999999999999999999999998865421  111     112223334444444320             


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCC-eE-EEEEc--------
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGL-FK-LVNLA--------  144 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~-~~-~v~~~--------  144 (409)
                       ....                  ...+.+++..+...|.+.+  .+++++.+++|.++..+++ .+ .+...        
T Consensus        92 -~~~~------------------~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g  152 (257)
T PRK04176         92 -KEVE------------------DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG  152 (257)
T ss_pred             -eeec------------------CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence             0000                  0123567888888888765  3789999999999976554 32 22221        


Q ss_pred             ---CCCEEecCEEEEcCCCchHhHhHh
Q 015331          145 ---DGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       145 ---~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                         +..+++|++||+|+|.+|.+.+.+
T Consensus       153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        153 LHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence               224799999999999999998776

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.55  E-value=1.6e-13  Score=121.27  Aligned_cols=133  Identities=21%  Similarity=0.298  Sum_probs=88.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcce--eE-----EechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF--AI-----TLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      ++||+||||||+|+++|+.|+++|.+|+|+||+..+.....  +.     .+.....++++++|+.              
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~--------------   86 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR--------------   86 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence            58999999999999999999999999999999987542211  10     1111222333333221              


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe--E-EEEEc-------
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF--K-LVNLA-------  144 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~--~-~v~~~-------  144 (409)
                      +              ...    ....+..++..+.+.|.+++  .++++++++.|.++..+++.  + .|.+.       
T Consensus        87 ~--------------~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~  148 (254)
T TIGR00292        87 Y--------------EDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA  148 (254)
T ss_pred             e--------------eec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc
Confidence            0              000    00112346777888887655  26899999999999876652  2 23332       


Q ss_pred             ----CCCEEecCEEEEcCCCchHhHhHh
Q 015331          145 ----DGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       145 ----~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                          +..+++|++||+|+|..|.+.+.+
T Consensus       149 g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       149 GLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             CCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence                224789999999999999887665

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.55  E-value=1.6e-12  Score=123.54  Aligned_cols=69  Identities=25%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc-hHhHhHhCCCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN-SVVAKWLGFKKP  173 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~-s~vr~~lg~~~~  173 (409)
                      .++...+.+.|.+.+  .+++++.+++|.+++.+++.+.|.+.++ ++.+|.||+|+|.+ +.+++.++...+
T Consensus       141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCC
Confidence            567777877776654  3789999999999998888888887766 69999999999987 567777776544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.50  E-value=7.1e-12  Score=120.27  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             cCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC-----CEEecCEEEEcCCCchH-hHhHhCCC
Q 015331          105 VKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG-----AVFKTKVLIGCDGVNSV-VAKWLGFK  171 (409)
Q Consensus       105 i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~~~ad~vV~AdG~~s~-vr~~lg~~  171 (409)
                      ++-..+...|.+.+  .+++++++++|++++.+++.+++.+.++     .++++|.||+|+|.+|. +.+.++..
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~  268 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR  268 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence            44456666666554  3789999999999998888777765443     36899999999999974 45555544

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.50  E-value=4.5e-13  Score=126.10  Aligned_cols=69  Identities=23%  Similarity=0.276  Sum_probs=54.3

Q ss_pred             cccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHh-HhHhCCCC
Q 015331          103 RSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKK  172 (409)
Q Consensus       103 ~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~~  172 (409)
                      ..++...+.+.|.+.+  .+++++.+++|++++.+++.|+ |.+.+|. +++|.||+|+|.++.. .+.++...
T Consensus       142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~  214 (358)
T PF01266_consen  142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDL  214 (358)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSS
T ss_pred             ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccccc
Confidence            3577888888888765  3789999999999999999998 9999998 9999999999999864 44455433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.50  E-value=1e-11  Score=111.66  Aligned_cols=306  Identities=17%  Similarity=0.111  Sum_probs=171.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCccCCc-ceeEEechhHHHHHHHcCCchHHHhhccccc--
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL------GIRSLVLESSESLRVT-GFAITLWTNAWRALDAVGISDSLRQQHIQLQ--   73 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~------g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~--   73 (409)
                      ..+||+|||||||||++|+.|+|.      .++|.|+|+...++.. -.|-.+.|.+++   ++  ..++.+.+.++.  
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL--~P~wke~~apl~t~  149 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL--LPDWKEDGAPLNTP  149 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh--CcchhhcCCccccc
Confidence            358999999999999999999773      5789999999987543 234445554433   22  233333333322  


Q ss_pred             --CeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCe--EEEEEc---
Q 015331           74 --GMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLF--KLVNLA---  144 (409)
Q Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~--~~v~~~---  144 (409)
                        .-.+... .+..  .++.+..........+.++-..+.++|-+.++  +++|+.+..+.++..+++.  ..|.++   
T Consensus       150 vT~d~~~fL-t~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G  226 (621)
T KOG2415|consen  150 VTSDKFKFL-TGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG  226 (621)
T ss_pred             ccccceeee-ccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence              1111111 1111  11111111112233557888899999988764  6788888777777554432  223333   


Q ss_pred             ------------CCCEEecCEEEEcCCCchHhHhHh----CCCC---CcccCceeEEEeeecCccCCCccccceee----
Q 015331          145 ------------DGAVFKTKVLIGCDGVNSVVAKWL----GFKK---PAFAGRSDIRGCTDFKLRHGLEPKFQQFL----  201 (409)
Q Consensus       145 ------------~g~~~~ad~vV~AdG~~s~vr~~l----g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  201 (409)
                                  .|..+.|+.-|.|.|.+..+.+++    +...   +..++.- +......++.........+-+    
T Consensus       227 I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglG-lKEvWei~~~~~~pG~v~HT~GwPl  305 (621)
T KOG2415|consen  227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLG-LKEVWEIDPENHNPGEVAHTLGWPL  305 (621)
T ss_pred             ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccc-cceeEecChhhcCCcceeeeccCcc
Confidence                        234789999999999998876654    3332   2222221 122222222111111111111    


Q ss_pred             ---cCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchh
Q 015331          202 ---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWE  278 (409)
Q Consensus       202 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (409)
                         .-|+ ..++.+++..+...+.+..+-...  -.+|   .+++++.  ..+|.+...++...-..+....+-..- .+
T Consensus       306 ~~~tYGG-sFlYh~~d~~VavGlVVgLdY~NP--~lsP---~~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGG-fQ  376 (621)
T KOG2415|consen  306 DNDTYGG-SFLYHFNDPLVAVGLVVGLDYKNP--YLSP---YKEFQKM--KHHPSISKVLEGGKRIAYGARALNEGG-FQ  376 (621)
T ss_pred             cCCccCc-eeEEEcCCCeEEEEEEEEecCCCC--CCCH---HHHHHHh--hcCcchhhhhcCcceeeehhhhhccCC-cc
Confidence               1112 345666666554444443222111  1223   2333332  566777777776532222111111100 00


Q ss_pred             hhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcC
Q 015331          279 VLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTE  327 (409)
Q Consensus       279 ~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~  327 (409)
                       ........+=+|||=+|++++=---.|...||.++..+|+.+-+++.+
T Consensus       377 -siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~  424 (621)
T KOG2415|consen  377 -SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKG  424 (621)
T ss_pred             -cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhc
Confidence             112445566789999999999989999999999999999999999876

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.49  E-value=3e-12  Score=125.36  Aligned_cols=163  Identities=17%  Similarity=0.176  Sum_probs=90.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCC--c-hH------HHhhcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGI--S-DS------LRQQHI   70 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl--~-~~------~~~~~~   70 (409)
                      |.+.+||+|||||++|+++|+.|+++|.+|+|+||++... .++++..+-..+.+.+....+  . +.      +.....
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p   82 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP   82 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence            5567999999999999999999999999999999975432 222333333334333332110  0 00      000000


Q ss_pred             c-ccCeEEEecc--------------------CC-ccc---cccccc------ccCC----CCCccccccCHHHHHHHHH
Q 015331           71 Q-LQGMVVASSV--------------------SC-QPA---SEISFK------TKGN----RGGHEVRSVKRSLLMEALE  115 (409)
Q Consensus        71 ~-~~~~~~~~~~--------------------~~-~~~---~~~~~~------~~~~----~~~~~~~~i~r~~l~~~l~  115 (409)
                      . .....+..+.                    .. ..+   ..+...      ....    ...+....++...+...+.
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~  162 (508)
T PRK12266         83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA  162 (508)
T ss_pred             CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence            0 0000000000                    00 000   000000      0000    0001111355566655555


Q ss_pred             hhC--CCCeEEeCceEEEEEEeCCeEEEEEcC---CC--EEecCEEEEcCCCchH
Q 015331          116 REL--PSGTIRYSSKVVSVEESGLFKLVNLAD---GA--VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~--~~~ad~vV~AdG~~s~  163 (409)
                      +.+  .+++++.+++|+++..+++.+.|++.+   |+  +++++.||+|+|.++.
T Consensus       163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            433  378999999999998888777777654   43  6899999999999984

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.49  E-value=6.9e-12  Score=127.13  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             ccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+...|.+.+. +++++++++|++++.+++.|+|.+.++..+.+|.||+|+|.++.
T Consensus       404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            4677888898888764 58999999999999888889999888877889999999999984

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.49  E-value=7.9e-12  Score=122.55  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=96.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCc---h------HHHhhcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGIS---D------SLRQQHI   70 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~------~~~~~~~   70 (409)
                      |+.++||+|||||++|+++|+.|+++|.+|+|+||.+... .+++...+-..+.+.+...++.   +      .+.....
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap   82 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP   82 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence            4567999999999999999999999999999999996432 2222233333344444332111   0      0001000


Q ss_pred             c-ccCeEEEeccC-Ccc--------------------c---ccccccc----cC------CCCCccccccCHHHHHHHHH
Q 015331           71 Q-LQGMVVASSVS-CQP--------------------A---SEISFKT----KG------NRGGHEVRSVKRSLLMEALE  115 (409)
Q Consensus        71 ~-~~~~~~~~~~~-~~~--------------------~---~~~~~~~----~~------~~~~~~~~~i~r~~l~~~l~  115 (409)
                      . .....+..... ...                    .   ..+....    ..      ....+....++...+...+.
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~  162 (502)
T PRK13369         83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA  162 (502)
T ss_pred             ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence            0 00000100000 000                    0   0000000    00      00011112356666766665


Q ss_pred             hhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCCchH-hHh-HhCCC
Q 015331          116 REL--PSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSV-VAK-WLGFK  171 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~~s~-vr~-~lg~~  171 (409)
                      ..+  .+++++.+++|+++..+++.+.|.+.++    .+++|+.||+|+|.++. +.+ .+|..
T Consensus       163 ~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~  226 (502)
T PRK13369        163 LDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN  226 (502)
T ss_pred             HHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence            544  3789999999999998888788877664    25899999999999985 444 33543

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.47  E-value=4.9e-12  Score=118.01  Aligned_cols=170  Identities=20%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCc---------ceeEEechhHHHH-HHHcC--CchHH-Hh
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT---------GFAITLWTNAWRA-LDAVG--ISDSL-RQ   67 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~---------~~~~~~~~~~~~~-l~~~g--l~~~~-~~   67 (409)
                      +++||+|||||+.|+++|+.|++++  ++|+|+||.+.+...         ..|+.+.+.+..+ +...|  .+.++ .+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999998  999999999865321         1233333332211 00000  00000 00


Q ss_pred             hccccc--CeEEEec-------------------------cCCcccccccc--c--ccCCCCCccccccCHHHHHHHHHh
Q 015331           68 QHIQLQ--GMVVASS-------------------------VSCQPASEISF--K--TKGNRGGHEVRSVKRSLLMEALER  116 (409)
Q Consensus        68 ~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~--~--~~~~~~~~~~~~i~r~~l~~~l~~  116 (409)
                      ...+..  +...+..                         .+.+.+..+..  .  .......+....++...+...|.+
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e  161 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE  161 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence            110000  1111100                         01111111000  0  000011233346777777777777


Q ss_pred             hC--CCCeEEeCceEEEEEEeCC-eEEEEEcCCCE-EecCEEEEcCCCch-HhHhHhCCCC
Q 015331          117 EL--PSGTIRYSSKVVSVEESGL-FKLVNLADGAV-FKTKVLIGCDGVNS-VVAKWLGFKK  172 (409)
Q Consensus       117 ~~--~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~-~~ad~vV~AdG~~s-~vr~~lg~~~  172 (409)
                      .+  .++.+++|++|++++..++ ...+.+.+|++ ++|++||+|.|..| ++.+..|.+.
T Consensus       162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            55  3789999999999999988 57778888876 99999999999998 4677777776

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.45  E-value=1.1e-12  Score=123.66  Aligned_cols=141  Identities=26%  Similarity=0.282  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC-------cceeEEe---------c------hhHHHHHHHcCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV-------TGFAITL---------W------TNAWRALDAVGIS   62 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~-------~~~~~~~---------~------~~~~~~l~~~gl~   62 (409)
                      |||+|||||||||+||+.|++.|.+|+|+||++.+..       ..|.+.-         .      .-....|++++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            7999999999999999999999999999999986522       1122221         0      0112334444321


Q ss_pred             hHHHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCe-E
Q 015331           63 DSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLF-K  139 (409)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~  139 (409)
                      + +.+.... .++......++..     |+       .   .-.-..+.+.|.+.+.  +++++++++|.+++.++++ +
T Consensus        81 d-~~~ff~~-~Gv~~~~~~~gr~-----fP-------~---s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f  143 (409)
T PF03486_consen   81 D-LIAFFEE-LGVPTKIEEDGRV-----FP-------K---SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVF  143 (409)
T ss_dssp             H-HHHHHHH-TT--EEE-STTEE-----EE-------T---T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEE
T ss_pred             H-HHHHHHh-cCCeEEEcCCCEE-----CC-------C---CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCcee
Confidence            1 1111000 1222211111111     11       0   1234566666666553  7899999999999988777 8


Q ss_pred             EEEEcCCCEEecCEEEEcCCCch
Q 015331          140 LVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       140 ~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .|+++++.++.||.||.|+|..|
T Consensus       144 ~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  144 GVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             EEEETTTEEEEESEEEE----SS
T ss_pred             EeeccCcccccCCEEEEecCCCC
Confidence            89997778899999999999876

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.43  E-value=2.2e-12  Score=107.35  Aligned_cols=129  Identities=25%  Similarity=0.233  Sum_probs=81.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      ++||+||||||+||++|+.|++.|++|+|||++..++..-       ..+.+...+..+|+++|+.              
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~--------------   82 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP--------------   82 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT----------------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce--------------
Confidence            5899999999999999999999999999999998765321       2245666778888887652              


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeC-CeEE-EEE---------
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESG-LFKL-VNL---------  143 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~-~~~~-v~~---------  143 (409)
                      +....+                  ..+..+...+...|..++  +++.++..+.|.++...+ +++. |..         
T Consensus        83 y~~~~~------------------g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g  144 (230)
T PF01946_consen   83 YEEYGD------------------GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG  144 (230)
T ss_dssp             -EE-SS------------------EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-
T ss_pred             eEEeCC------------------eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh
Confidence            110000                  112345555666665433  478999999999987666 4432 211         


Q ss_pred             --cCCCEEecCEEEEcCCCchHh
Q 015331          144 --ADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       144 --~~g~~~~ad~vV~AdG~~s~v  164 (409)
                        -|.-++++++||+|+|-.+.+
T Consensus       145 lHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen  145 LHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             -T-B-EEEEESEEEE---SSSSS
T ss_pred             cCCCcceEEEeEEEeCCCCchHH
Confidence              133479999999999988865

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.42  E-value=1.8e-11  Score=116.73  Aligned_cols=67  Identities=27%  Similarity=0.451  Sum_probs=55.4

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCC
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~  171 (409)
                      .++...+.+.|.+.+.  +++++++++|.+++..++.+.|.+.++ ++.||.||.|+|.+|. +.+.+|..
T Consensus       145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence            5677888888887653  689999999999998888888888776 6999999999999984 56777764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.41  E-value=5e-10  Score=109.32  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             HHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          114 LERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       114 l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      |.+.+.+++|+++++|+.|+.++++|+|++.+|+++.||.||.|.-...
T Consensus       231 l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~  279 (462)
T TIGR00562       231 IEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA  279 (462)
T ss_pred             HHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence            3334433579999999999999888999988888899999999887643

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.41  E-value=3.9e-11  Score=115.51  Aligned_cols=68  Identities=19%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSV-VAKWLGFKK  172 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~  172 (409)
                      .++-..+...|.+.+  .+++++++++|++++.+++.+. |++.++ ++.+|.||.|+|.++. +.+.++...
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~  268 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDI  268 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCc
Confidence            355567777776554  3789999999999988777654 666544 6999999999999985 344455543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.40  E-value=8.7e-12  Score=103.02  Aligned_cols=133  Identities=22%  Similarity=0.246  Sum_probs=90.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      ..||+||||||+||++|+.|+++|.+|+||||+..+...-       ..+.+...+.++|+++|+.-+-           
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~-----------   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEE-----------   98 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCccee-----------
Confidence            4699999999999999999999999999999998764321       1233555677777777653110           


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCC-eEE-EEE---------
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGL-FKL-VNL---------  143 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~-~~~-v~~---------  143 (409)
                         ..+                  ..+..+...+...|..++  .+..|+.++.|.++...++ ++. |..         
T Consensus        99 ---~e~------------------g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~  157 (262)
T COG1635          99 ---EED------------------GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG  157 (262)
T ss_pred             ---cCC------------------ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc
Confidence               001                  011344445555555443  2578999999999876665 322 111         


Q ss_pred             --cCCCEEecCEEEEcCCCchHhHhHh
Q 015331          144 --ADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       144 --~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                        .|.-.+++++||+|+|-...+-+.+
T Consensus       158 lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         158 LHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             cccCcceeeEEEEEeCCCCchHHHHHH
Confidence              2344789999999999888775554

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.40  E-value=1.1e-10  Score=111.90  Aligned_cols=70  Identities=20%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe-CCe-EEEEEcCCCEEecCEEEEcCCCch-HhHhHhCCCCCc
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEES-GLF-KLVNLADGAVFKTKVLIGCDGVNS-VVAKWLGFKKPA  174 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~-~~~-~~v~~~~g~~~~ad~vV~AdG~~s-~vr~~lg~~~~~  174 (409)
                      .++...+...|.+.+  .+++++.+++|++++.. ++. +.|++.+| ++.++.||+|.|.++ .+++.++...+.
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~  253 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPI  253 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCc
Confidence            455556666665544  37899999999999754 344 45777777 589987766666555 667777766443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.39  E-value=5.5e-12  Score=122.57  Aligned_cols=151  Identities=19%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-ccCCcceeEEechhH-HHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-SLRVTGFAITLWTNA-WRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |..++||+|||||+||+.+|+.+++.|.+|+|+|++. .++..+|.-.+...+ -.+.++++....+........++.+.
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r   80 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFR   80 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCcee
Confidence            4567999999999999999999999999999999874 332222221111111 12223221111110000000111111


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVL  154 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~v  154 (409)
                      ..+....         ... ......+++..+.+.+.+.+   +++++ +...|.++..+++.+ .|.+.+|..+.|+.|
T Consensus        81 ~ln~skG---------pAV-~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~V  149 (618)
T PRK05192         81 MLNTSKG---------PAV-RALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAV  149 (618)
T ss_pred             ecccCCC---------Cce-eCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEE
Confidence            1110000         000 00112578888888776654   35676 456788887666654 488888999999999


Q ss_pred             EEcCCCch
Q 015331          155 IGCDGVNS  162 (409)
Q Consensus       155 V~AdG~~s  162 (409)
                      |+|+|.++
T Consensus       150 IlATGTFL  157 (618)
T PRK05192        150 VLTTGTFL  157 (618)
T ss_pred             EEeeCcch
Confidence            99999765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.38  E-value=4.3e-12  Score=122.10  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHh-hcccccCeEEEec
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQ-QHIQLQGMVVASS   80 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~~   80 (409)
                      ....+|+|||||||||++|..|++.|++|+|||+++.++.   .+.+.+....  +.+++...... ............+
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG---~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p   82 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG---LWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLP   82 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcc---eeecCCCcCC--CccccCCCCcccchhhhhhhhccCC
Confidence            3468999999999999999999999999999999986532   2222221100  00111110000 0000000000000


Q ss_pred             cCCcccccccccccCC-CCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeCCeEEEEEcCCC----EEec
Q 015331           81 VSCQPASEISFKTKGN-RGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESGLFKLVNLADGA----VFKT  151 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~~~~~v~~~~g~----~~~a  151 (409)
                      ..--....+++..... ..........+.++.++|.+.+.  +.  .|+++++|++++..+++|+|++.++.    +..+
T Consensus        83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~  162 (461)
T PLN02172         83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF  162 (461)
T ss_pred             HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence            0000000111111000 00001124567788888877553  34  48999999999998889999886532    4579


Q ss_pred             CEEEEcCCCch
Q 015331          152 KVLIGCDGVNS  162 (409)
Q Consensus       152 d~vV~AdG~~s  162 (409)
                      |.||+|+|..+
T Consensus       163 d~VIvAtG~~~  173 (461)
T PLN02172        163 DAVVVCNGHYT  173 (461)
T ss_pred             CEEEEeccCCC
Confidence            99999999765

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.38  E-value=2.4e-11  Score=118.06  Aligned_cols=58  Identities=22%  Similarity=0.231  Sum_probs=47.1

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+...|.+.+  .+++|+.+++|++++. ++.+.|++.+| ++.||.||.|+|.++.
T Consensus       179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            567788888887655  3789999999999985 45577888777 5999999999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.36  E-value=1.1e-12  Score=113.13  Aligned_cols=136  Identities=22%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             EEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCccc
Q 015331            8 VIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPA   86 (409)
Q Consensus         8 vIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~   86 (409)
                      +||||||+||++|..|.++|.+ |+|||+++.+.......   +      ....+       ..+  .. +.....-...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~---~------~~~~~-------~~~--~~-~~~~~~~~~~   61 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY---Y------SYTRL-------HSP--SF-FSSDFGLPDF   61 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH----------TTTT--------BSS--SC-CTGGSS--CC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe---C------CCCcc-------ccC--cc-ccccccCCcc
Confidence            7999999999999999999999 99999997654321100   0      00000       000  00 0000000000


Q ss_pred             ccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           87 SEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      ..+.+..... .........+.++.++|.+.+.  +..++++++|++++.++++|+|++.++.+++||.||.|+|..|.
T Consensus        62 ~~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   62 ESFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             CHSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             cccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            0011100000 0001113556666666654332  56799999999999999999999999988999999999997653

...

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.35  E-value=4.6e-10  Score=109.24  Aligned_cols=54  Identities=30%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.|.+.++..+|+++++|+.|+.+++.++|.+.+|+++.||.||.|.-...
T Consensus       222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~  275 (451)
T PRK11883        222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV  275 (451)
T ss_pred             HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence            344455555533379999999999998888999999999999999999987654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.34  E-value=1.9e-10  Score=109.68  Aligned_cols=65  Identities=23%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             ccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh-HhHhC
Q 015331          104 SVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLG  169 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg  169 (409)
                      .++...+.+.|.+.+.  + ..+..++.+..++.....+.|.+.+|. +.+|.||.|+|.++.. ...++
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~  220 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG  220 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence            5666777777776553  4 356668889888874356889998888 9999999999999864 34444

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.33  E-value=3e-11  Score=102.95  Aligned_cols=137  Identities=21%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------------ceeEEechhHHHHHHHc------CCchHHHh
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------------GFAITLWTNAWRALDAV------GISDSLRQ   67 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------------~~~~~~~~~~~~~l~~~------gl~~~~~~   67 (409)
                      +|+|||+||+|+++|+.|+..|.+|+||||+.....+            ..+..+.++...+++-.      |+.+....
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            7999999999999999999999999999998753211            12233444433333322      32222111


Q ss_pred             hcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC
Q 015331           68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA  147 (409)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~  147 (409)
                      .      ...+.. ++     ........  +|.. .-.-+.|.+.|..   +.+|.++++|+.+...++.|++++++|.
T Consensus        83 ~------~~~~~~-~~-----~~~~~d~~--pyvg-~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g~  144 (331)
T COG3380          83 A------VWTFTG-DG-----SPPRGDED--PYVG-EPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDGT  144 (331)
T ss_pred             c------cccccc-CC-----CCCCCCCC--cccc-CcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCCC
Confidence            1      111000 00     00000000  1110 1222445555554   5689999999999999999999997765


Q ss_pred             -EEecCEEEEcCCC
Q 015331          148 -VFKTKVLIGCDGV  160 (409)
Q Consensus       148 -~~~ad~vV~AdG~  160 (409)
                       ...+|.||.|--.
T Consensus       145 ~~~~~d~vvla~PA  158 (331)
T COG3380         145 RHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccceEEEecCC
Confidence             5678888887543

>PRK07233 hypothetical protein; Provisional

Probab=99.33  E-value=8.1e-10  Score=107.00  Aligned_cols=53  Identities=25%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             HHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          110 LMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       110 l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +.+.|.+.+.  +++|+++++|++|+.+++.+++...++.++++|.||.|.....
T Consensus       200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~  254 (434)
T PRK07233        200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI  254 (434)
T ss_pred             HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence            4455555443  5789999999999988887766667777899999999998653

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.32  E-value=6.1e-10  Score=108.63  Aligned_cols=59  Identities=12%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      .|.+.|.+.+++++|+++++|+.|+.+++++.|.+.+|+++.||.||.|.- .....+.+
T Consensus       227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll  285 (463)
T PRK12416        227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP-HDIAETLL  285 (463)
T ss_pred             HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence            455555555544579999999999999889999988888899999999884 33334444

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.31  E-value=6.1e-11  Score=104.17  Aligned_cols=173  Identities=20%  Similarity=0.207  Sum_probs=98.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEech-------------hHHHHHHHcCCchHHHh
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWT-------------NAWRALDAVGISDSLRQ   67 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~-------------~~~~~l~~~gl~~~~~~   67 (409)
                      |.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+...|.+.+.+.             -..+.++.+--.+.+..
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g   83 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG   83 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence            55678999999999999999999999999999999988765554433221             12222332211111100


Q ss_pred             hcccccCeEEEec------------------------cCCccccccc----ccccCC-CCCccccccCHHHHHHHHHhhC
Q 015331           68 QHIQLQGMVVASS------------------------VSCQPASEIS----FKTKGN-RGGHEVRSVKRSLLMEALEREL  118 (409)
Q Consensus        68 ~~~~~~~~~~~~~------------------------~~~~~~~~~~----~~~~~~-~~~~~~~~i~r~~l~~~l~~~~  118 (409)
                      .........+...                        .+.+....++    ++.... ......-.+...+-.+.|...+
T Consensus        84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence            0000000000000                        0000000111    111000 0011122455555556666555


Q ss_pred             C--CCeEEeCceEEEEE---EeCCeEEEEEcCCCEEecCEEEEcCCCch--HhHhHhCCCCC
Q 015331          119 P--SGTIRYSSKVVSVE---ESGLFKLVNLADGAVFKTKVLIGCDGVNS--VVAKWLGFKKP  173 (409)
Q Consensus       119 ~--~~~i~~~~~v~~v~---~~~~~~~v~~~~g~~~~ad~vV~AdG~~s--~vr~~lg~~~~  173 (409)
                      .  ++.++.+..|..++   +++..+.|.+.+|..+.++-+|.+.|+|-  .++..+++..+
T Consensus       164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~P  225 (399)
T KOG2820|consen  164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFP  225 (399)
T ss_pred             HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCc
Confidence            3  68999999998876   35567889999999999999999999974  23433444433

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.30  E-value=2.7e-11  Score=114.63  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHH----HHHHHcCCchHHHhhcccccCeEEE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW----RALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      ...+|+|||||||||++|..|.+.|++|++|||.+.++..   +.+.++.-    .+.+.+                ...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl---W~y~~~~~~~~ss~Y~~l----------------~tn   65 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL---WKYTENVEVVHSSVYKSL----------------RTN   65 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce---EeecCcccccccchhhhh----------------hcc
Confidence            4679999999999999999999999999999999875432   22221111    011111                110


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC----CCeEEeCceEEEEEEeC-CeEEEEEcCC----CEE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP----SGTIRYSSKVVSVEESG-LFKLVNLADG----AVF  149 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~----~~~i~~~~~v~~v~~~~-~~~~v~~~~g----~~~  149 (409)
                      ....--....++|...     ...++.++.++.++|.+.+.    ...|.++++|..++... +.|.|.+.++    ...
T Consensus        66 ~pKe~~~~~dfpf~~~-----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~  140 (448)
T KOG1399|consen   66 LPKEMMGYSDFPFPER-----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEE  140 (448)
T ss_pred             CChhhhcCCCCCCccc-----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEE
Confidence            0000001112223221     23345777789999987664    34799999999999888 7999998765    367


Q ss_pred             ecCEEEEcCCCch
Q 015331          150 KTKVLIGCDGVNS  162 (409)
Q Consensus       150 ~ad~vV~AdG~~s  162 (409)
                      .+|.||+|+|-+.
T Consensus       141 ifd~VvVctGh~~  153 (448)
T KOG1399|consen  141 IFDAVVVCTGHYV  153 (448)
T ss_pred             EeeEEEEcccCcC
Confidence            8999999999883

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.28  E-value=3.1e-11  Score=111.41  Aligned_cols=144  Identities=19%  Similarity=0.231  Sum_probs=84.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEE-eCCCccCCcceeEEechhHHHHH-HHcCCchHHHhhcccccCeEEEeccCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVL-ESSESLRVTGFAITLWTNAWRAL-DAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l-~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ||+|||||.||+.||+.+++.|.+|+|+ ++.+.....+|.-.+...+.-.| +++.......-.......+.+...+..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            8999999999999999999999999999 44444444445444443333222 222111111111111123333322211


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .-...          ......++|..+.+.+.+.+   ++.++. ..+|+++..+++. ..|.+.+|..+.+|.||+|+|
T Consensus        81 kGpav----------~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTG  149 (392)
T PF01134_consen   81 KGPAV----------HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATG  149 (392)
T ss_dssp             S-GGC----------TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred             CCCCc----------cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecc
Confidence            11000          11223689998888887755   456775 5689999887766 458899999999999999999


Q ss_pred             C
Q 015331          160 V  160 (409)
Q Consensus       160 ~  160 (409)
                      .
T Consensus       150 t  150 (392)
T PF01134_consen  150 T  150 (392)
T ss_dssp             T
T ss_pred             c
Confidence            8

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.27  E-value=7.6e-11  Score=114.42  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             ccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCC-eEEEEEc---CCC--EEecCEEEEcCCCch-HhHhHhCCCC
Q 015331          104 SVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGL-FKLVNLA---DGA--VFKTKVLIGCDGVNS-VVAKWLGFKK  172 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~-~~~v~~~---~g~--~~~ad~vV~AdG~~s-~vr~~lg~~~  172 (409)
                      .++...+.+.|.+.+.  + ++++++++|++++.+++ .|.|.+.   +|+  +++|++||+|+|.+| .+++.+|+..
T Consensus       179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~  257 (494)
T PRK05257        179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE  257 (494)
T ss_pred             EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence            5777888888877653  3 69999999999998655 4777653   353  689999999999987 4677777764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.27  E-value=9e-11  Score=113.11  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             cccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEe-CCeEEEEE---cCCC--EEecCEEEEcCCCchH-hHhHhCCCC
Q 015331          103 RSVKRSLLMEALEREL---PSGTIRYSSKVVSVEES-GLFKLVNL---ADGA--VFKTKVLIGCDGVNSV-VAKWLGFKK  172 (409)
Q Consensus       103 ~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~-~~~~~v~~---~~g~--~~~ad~vV~AdG~~s~-vr~~lg~~~  172 (409)
                      ..++...+.+.|.+.+   .+++++++++|++++.+ ++.|++++   .+++  +++||+||+|.|.+|. +.+.+|+..
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~  258 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE  258 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence            3678888888887655   36899999999999887 67788763   3442  6899999999999994 677777764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.27  E-value=3.7e-10  Score=106.69  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=43.4

Q ss_pred             ccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+...|.+.+   .+++++.+++|.+++..    .|.+.+|. ++||.||.|+|.+|.
T Consensus       141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence            567777878777654   27899999999999653    57777775 789999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02612 phytoene desaturase

Probab=99.26  E-value=3.5e-09  Score=105.10  Aligned_cols=61  Identities=30%  Similarity=0.447  Sum_probs=47.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcce------------e----EEechhHHHHHHHcCCchH
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF------------A----ITLWTNAWRALDAVGISDS   64 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~------------~----~~~~~~~~~~l~~~gl~~~   64 (409)
                      ..+|+|||||++||++|+.|+++|++|+|+|+.+.++....            |    ....++..++++++|+.+.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            57899999999999999999999999999999875422111            1    1123567888999998654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.26  E-value=5.7e-10  Score=111.68  Aligned_cols=66  Identities=20%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe--CCe-EEEEE---cCCC--EEecCEEEEcCCCchH-hHhHhC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEES--GLF-KLVNL---ADGA--VFKTKVLIGCDGVNSV-VAKWLG  169 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~--~~~-~~v~~---~~g~--~~~ad~vV~AdG~~s~-vr~~lg  169 (409)
                      .++...+...|.+.+  .+++++.+++|+++..+  ++. +.|++   .+++  ++.+|.||+|+|.+|. +++.++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            467778888777755  36899999999999876  343 33443   2333  5899999999999985 566665

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.4e-10  Score=111.31  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +.++||+|||||++|+++|+.|.++|.+ ++||||+..+.....-   .                     ...++....+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~---~---------------------ry~~l~~~~p   61 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY---N---------------------RYPGLRLDSP   61 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh---c---------------------cCCceEECCc
Confidence            4578999999999999999999999998 9999999865432110   0                     1111111111


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe--CCeEEEEEcCCCE--EecCEEEE
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES--GLFKLVNLADGAV--FKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~--~~~~~v~~~~g~~--~~ad~vV~  156 (409)
                      ..   ...+++........+....-.+..+...+.+.-....+.+++.|..+..+  ++.|+|+++++..  ++||.||.
T Consensus        62 ~~---~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~  138 (443)
T COG2072          62 KW---LLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV  138 (443)
T ss_pred             hh---eeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence            10   01111111110001111112345555555554334577787777776655  4579999999875  45999999


Q ss_pred             cCCCch
Q 015331          157 CDGVNS  162 (409)
Q Consensus       157 AdG~~s  162 (409)
                      |+|..+
T Consensus       139 ATG~~~  144 (443)
T COG2072         139 ATGHLS  144 (443)
T ss_pred             eecCCC
Confidence            999866

>PLN02568 polyamine oxidase

Probab=99.24  E-value=7.8e-10  Score=108.50  Aligned_cols=53  Identities=28%  Similarity=0.350  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331          108 SLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..|.+.|.+.+++..|+++++|+.|+..++.++|++.+|+++.||.||.+.-.
T Consensus       242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            45788888888767899999999999999999999999988999999988764

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.22  E-value=1.4e-09  Score=103.80  Aligned_cols=169  Identities=16%  Similarity=0.205  Sum_probs=102.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCc---hHHHhhcc--------
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGIS---DSLRQQHI--------   70 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~--------   70 (409)
                      +.+||+|||||+.|+-+|+-++.+|++|+|+|+++.- +.+++...+-..++++|++..+.   +.+.+...        
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            5789999999999999999999999999999999864 34456666777788888775432   22221100        


Q ss_pred             --cccCeEEEec-----------------cCCc-----cccccccc------ccC-C-----CCCccccccCHHHHHHHH
Q 015331           71 --QLQGMVVASS-----------------VSCQ-----PASEISFK------TKG-N-----RGGHEVRSVKRSLLMEAL  114 (409)
Q Consensus        71 --~~~~~~~~~~-----------------~~~~-----~~~~~~~~------~~~-~-----~~~~~~~~i~r~~l~~~l  114 (409)
                        +.........                 ..+.     ....+...      +.- .     ...|..+.++-..|.-..
T Consensus        91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~  170 (532)
T COG0578          91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN  170 (532)
T ss_pred             cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence              1000000000                 0000     00000000      000 0     111222334444444444


Q ss_pred             HhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCC-----EEecCEEEEcCCCchH-hHhHhCCC
Q 015331          115 EREL--PSGTIRYSSKVVSVEESGLFKLVNLADGA-----VFKTKVLIGCDGVNSV-VAKWLGFK  171 (409)
Q Consensus       115 ~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-----~~~ad~vV~AdG~~s~-vr~~lg~~  171 (409)
                      ...+  .+.++...++|+.+..+++.+.|...|..     +++|+.||+|+|.|+- +++..+..
T Consensus       171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~  235 (532)
T COG0578         171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE  235 (532)
T ss_pred             HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence            3332  36799999999999999887677776543     5899999999999995 46666444

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.21  E-value=3.3e-10  Score=109.95  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             cccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeC-CeEEEEEc---CCC--EEecCEEEEcCCCchH-hHhHhCCCC
Q 015331          103 RSVKRSLLMEALERELP--SGTIRYSSKVVSVEESG-LFKLVNLA---DGA--VFKTKVLIGCDGVNSV-VAKWLGFKK  172 (409)
Q Consensus       103 ~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~-~~~~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~lg~~~  172 (409)
                      ..++...+.+.|.+.+.  +++++++++|++++.++ +.|.+++.   ++.  +++||+||+|.|.+|. +++.+|+..
T Consensus       173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~  251 (483)
T TIGR01320       173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE  251 (483)
T ss_pred             EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence            36788888888887663  78999999999998864 45776543   332  6899999999999874 678888764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.19  E-value=4.9e-10  Score=108.45  Aligned_cols=66  Identities=17%  Similarity=0.277  Sum_probs=52.6

Q ss_pred             ccCHHHHHHHHHhhCC------C--CeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCC
Q 015331          104 SVKRSLLMEALERELP------S--GTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGF  170 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~------~--~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~  170 (409)
                      .++...+.+.|.+.+.      +  ++++++++|++++.+ ++.+.|++.+| +++||.||+|.|.+|. +.+.+|+
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence            5777778777766542      3  578999999999987 55688888877 5999999999999994 6777775

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.18  E-value=3.3e-10  Score=112.05  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEc---CC--CEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLA---DG--AVFKTKVLIGCDGVNSV-VAKWLGFKK  172 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~---~g--~~~~ad~vV~AdG~~s~-vr~~lg~~~  172 (409)
                      .++...+...+...+  .+++++++++|+++..+++.+. |++.   ++  .+++|+.||+|+|.++. +.+..+...
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~  222 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRI  222 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCC
Confidence            567777777766544  3789999999999988776543 5442   23  36899999999999985 555556543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.17  E-value=3.9e-10  Score=103.51  Aligned_cols=110  Identities=27%  Similarity=0.412  Sum_probs=74.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+|||||++|+++|..|++.|++|+|||+.+. .  + .+...             .          ....+   .  
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-g--g-~~~~~-------------~----------~~~~~---~--   48 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-G--G-QLTTT-------------T----------EVENY---P--   48 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-C--c-ceeec-------------c----------ccccc---C--
Confidence            6999999999999999999999999999998762 1  1 01000             0          00000   0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                         .  +.          ..+...++...+.+.+  .++++++ ++|++++..++.+.|++.++.++++|.||.|+|...
T Consensus        49 ---~--~~----------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        49 ---G--FP----------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             ---C--CC----------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence               0  00          0112223333443322  2678888 899999988888889888888999999999999865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.16  E-value=2.8e-11  Score=116.22  Aligned_cols=148  Identities=20%  Similarity=0.177  Sum_probs=35.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc---eeEEech-hHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG---FAITLWT-NAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~---~~~~~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      |||||||||+|++||+.+++.|.+|+|+|+.+.++...   ....+.. .... ...-|+..++.............  .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~--~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQE--D   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhcccccc--c
Confidence            89999999999999999999999999999998764321   1111111 1111 11112333333322110000000  0


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcC---CCEEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLAD---GAVFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~---g~~~~ad~vV  155 (409)
                      .......              ..+++..+...|.+.+  .++++++++.|.++..+++.+ .|.+.+   ..+++|+++|
T Consensus        78 ~~~~~~~--------------~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~I  143 (428)
T PF12831_consen   78 RYGWVSN--------------VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFI  143 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc--------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000000              1233333333333322  378999999999998877543 344443   3479999999


Q ss_pred             EcCCCchHhHhHhCCC
Q 015331          156 GCDGVNSVVAKWLGFK  171 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~  171 (409)
                      +|+|. ..+....|.+
T Consensus       144 DaTG~-g~l~~~aG~~  158 (428)
T PF12831_consen  144 DATGD-GDLAALAGAP  158 (428)
T ss_dssp             ----------------
T ss_pred             ccccc-cccccccccc
Confidence            99994 5555554443

>PLN02268 probable polyamine oxidase

Probab=99.16  E-value=2.6e-09  Score=103.41  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +..|++++.|+.|...+++++|++.+|+++.||.||.|.-.
T Consensus       210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            45799999999999998899999999988999999999753

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.15  E-value=1.6e-10  Score=112.81  Aligned_cols=137  Identities=20%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++||++|..|.+.|++|++|||++.++....   ...+.         .+   ....-...........--
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~---~~~~~---------~~---g~~~~y~sl~~n~sk~~~   66 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR---YTENP---------ED---GRSSVYDSLHTNTSKEMM   66 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC---HSTTC---------CC---SEGGGSTT-B-SS-GGGS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe---eCCcC---------CC---CccccccceEEeeCchHh
Confidence            5899999999999999999999999999999997643211   00000         00   000001111111000000


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCC----CCeEEeCceEEEEEEeC-----CeEEEEEcCCC---EEecC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP----SGTIRYSSKVVSVEESG-----LFKLVNLADGA---VFKTK  152 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~----~~~i~~~~~v~~v~~~~-----~~~~v~~~~g~---~~~ad  152 (409)
                      ....++++.     .+. ...++.++.++|.+.+.    ...|++||+|+++++.+     ++|.|++.++.   +..+|
T Consensus        67 ~fsdfp~p~-----~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD  140 (531)
T PF00743_consen   67 AFSDFPFPE-----DYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD  140 (531)
T ss_dssp             CCTTS-HCC-----CCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC
T ss_pred             cCCCcCCCC-----CCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC
Confidence            011122221     111 25788899999887553    24899999999999865     46999886543   45689


Q ss_pred             EEEEcCCCch
Q 015331          153 VLIGCDGVNS  162 (409)
Q Consensus       153 ~vV~AdG~~s  162 (409)
                      .||.|+|.++
T Consensus       141 ~VvvatG~~~  150 (531)
T PF00743_consen  141 AVVVATGHFS  150 (531)
T ss_dssp             EEEEEE-SSS
T ss_pred             eEEEcCCCcC
Confidence            9999999987

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.14  E-value=2.1e-08  Score=98.91  Aligned_cols=59  Identities=22%  Similarity=0.408  Sum_probs=45.3

Q ss_pred             HHHHHHhhCC--CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331          110 LMEALERELP--SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       110 l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      +.+.|.+.+.  +++|++++.|.+|..++++ +.|++.+|+++.+|.||.|.+......+.+
T Consensus       221 l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       221 LVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence            4445544432  6899999999999877765 678888888899999999999876665554

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.12  E-value=4e-08  Score=92.82  Aligned_cols=61  Identities=25%  Similarity=0.487  Sum_probs=47.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCc-------c-------eeEEec-hhHHHHHHHcCCchHHH
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT-------G-------FAITLW-TNAWRALDAVGISDSLR   66 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~-------~-------~~~~~~-~~~~~~l~~~gl~~~~~   66 (409)
                      .|+|||||++||++|+.|++++  .+|+|||+++..+..       +       ..+... +..++.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6999999999999999999999  999999998754221       1       112222 56778889999988776

>PLN02576 protoporphyrinogen oxidase

Probab=99.11  E-value=2.4e-08  Score=98.33  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~   40 (409)
                      +++||+|||||++||++|+.|+++ |++|+|+|+++.++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            457999999999999999999999 99999999998653

>PLN02676 polyamine oxidase

Probab=99.11  E-value=7.8e-09  Score=100.69  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhhCC--------CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          107 RSLLMEALERELP--------SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       107 r~~l~~~l~~~~~--------~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.+.|.+.+.        +..|++|++|..|+.++++++|++.+|++++||.||.|.....
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v  286 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV  286 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence            4566777776552        2579999999999999999999999999999999999998554

>PRK07208 hypothetical protein; Provisional

Probab=99.11  E-value=1.9e-08  Score=98.67  Aligned_cols=40  Identities=38%  Similarity=0.570  Sum_probs=37.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |+++.||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            8889999999999999999999999999999999988653

>TIGR00275 flavoprotein, HI0933 family

Probab=99.10  E-value=5.5e-10  Score=106.29  Aligned_cols=148  Identities=23%  Similarity=0.228  Sum_probs=86.3

Q ss_pred             EEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc----ceeE-Eech-h-HHHHHHHcCCchH-HHhhcccc-------
Q 015331            8 VIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----GFAI-TLWT-N-AWRALDAVGISDS-LRQQHIQL-------   72 (409)
Q Consensus         8 vIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~-~~~~-~-~~~~l~~~gl~~~-~~~~~~~~-------   72 (409)
                      +|||||+||+++|+.|+++|.+|+|+||.+.++..    +.+. .+.. . ...+.+..+-... +.......       
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            69999999999999999999999999998865321    1111 1111 0 1112222211111 10000000       


Q ss_pred             ----cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC
Q 015331           73 ----QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG  146 (409)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g  146 (409)
                          .+..+.....+.              .+. ..-....+.+.|.+.+  .+++++++++|++++.+++.+.|++ ++
T Consensus        81 ~~~~~Gv~~~~~~~g~--------------~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~  144 (400)
T TIGR00275        81 FFESLGLELKVEEDGR--------------VFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SG  144 (400)
T ss_pred             HHHHcCCeeEEecCCE--------------eEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CC
Confidence                011111000000              000 0112345566665544  2689999999999988777788877 45


Q ss_pred             CEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331          147 AVFKTKVLIGCDGVNS-----------VVAKWLGFK  171 (409)
Q Consensus       147 ~~~~ad~vV~AdG~~s-----------~vr~~lg~~  171 (409)
                      .++.+|.||.|+|.+|           .+.+.+|..
T Consensus       145 ~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       145 GEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             cEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence            6799999999999877           456677665

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.4e-09  Score=98.35  Aligned_cols=112  Identities=26%  Similarity=0.324  Sum_probs=75.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.+||+|||||||||++|.++++++.+ ++|+|+... +  +.                          +.....+    
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g~--------------------------~~~~~~v----   48 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--GQ--------------------------LTKTTDV----   48 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--Cc--------------------------cccceee----
Confidence            468999999999999999999999999 666665432 1  00                          0000000    


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                      .     .  ++.       ....+.-.+|.+.+.+.+  .+.++.. ..|..++..++.+.|++.++. ++|+.||.|+|
T Consensus        49 e-----n--ypg-------~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG  112 (305)
T COG0492          49 E-----N--YPG-------FPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATG  112 (305)
T ss_pred             c-----C--CCC-------CccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcC
Confidence            0     0  000       000244556777777665  3566666 677777777668889999988 99999999999


Q ss_pred             CchH
Q 015331          160 VNSV  163 (409)
Q Consensus       160 ~~s~  163 (409)
                      ....
T Consensus       113 ~~~~  116 (305)
T COG0492         113 AGAR  116 (305)
T ss_pred             Cccc
Confidence            8753

>PLN02487 zeta-carotene desaturase

Probab=99.09  E-value=5.9e-08  Score=95.49  Aligned_cols=63  Identities=27%  Similarity=0.461  Sum_probs=48.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ce----eEE----echhHHHHHHHcCCchHHH
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GF----AIT----LWTNAWRALDAVGISDSLR   66 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~----~~~----~~~~~~~~l~~~gl~~~~~   66 (409)
                      .++|+|||||++||++|+.|+++|++|+|+|+.+.++..        +.    |..    ..++..++++++|+.+.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            359999999999999999999999999999998865421        11    111    2356888999999876653

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.08  E-value=1.4e-07  Score=87.37  Aligned_cols=200  Identities=12%  Similarity=0.025  Sum_probs=102.5

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCc----------ccCceeEEEeeecCc
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPA----------FAGRSDIRGCTDFKL  189 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~----------~~~~~~~~~~~~~~~  189 (409)
                      +..|.++.+|..|.+.+++|+|++.+..++.+|++|++-=. + +..++.+..+.          .....+....+.++.
T Consensus       220 ~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl-~-~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~r  297 (450)
T COG1231         220 GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPL-A-ILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSR  297 (450)
T ss_pred             hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCH-H-HHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCc
Confidence            45889999999999999999999999667999999977542 2 23333333211          011111122222322


Q ss_pred             cC--CCc-cccceeecCceEEEEEecC---CCeEEEEEEEc-CCCCCCCCCCChhHHHHHHHHHhcCCCH-HHHHHHHcC
Q 015331          190 RH--GLE-PKFQQFLGKGFRYGFLPCN---DQTVYWFFNWC-PSNQDKELEGNPDKTKQFVLSKCHDLPE-QVKAIVENT  261 (409)
Q Consensus       190 ~~--~~~-~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  261 (409)
                      +-  ... ..-..+......+..+|-.   ++...+.-.+. .++.......++++..+.++..+..+.+ ...+.+...
T Consensus       298 pFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~  377 (450)
T COG1231         298 PFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYG  377 (450)
T ss_pred             hhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccc
Confidence            10  000 1112233333334445544   44333322222 2333333556777777777777764444 333333321


Q ss_pred             CCCceeeccccccCchhhhc----------cccCCCcEEEec-cCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhc
Q 015331          262 PLDSILVSPLRYRYPWEVLW----------GNISKGNVCVAG-DAFHPMTPDIGQGGCAALEDGIILARCIAEAST  326 (409)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~lvG-DAA~~~~P~~G~G~~~al~da~~La~~l~~~~~  326 (409)
                      ....+...+.... .+....          -.-..+||.++| .-    .|.++.=+--|++++...+..|...+.
T Consensus       378 ~~~~W~~dpwt~G-~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEh----as~~~Gw~eGAi~Sg~~AA~ei~~~l~  448 (450)
T COG1231         378 ASVDWSKDPWTLG-GTAAYPPGQRTKLYPTLPAPHGRIHFAGTEH----ASEFGGWLEGAIRSGQRAAAEIHALLS  448 (450)
T ss_pred             eeeecccCCcCCc-cccccCCcccccccccccCCCCceEEeeecc----cccccchhHHHHHHHHHHHHHHHHhhc
Confidence            1111111111111 000000          011457899988 43    345555667799999999998887654

>TIGR02730 carot_isom carotene isomerase

Probab=99.06  E-value=4.1e-08  Score=96.47  Aligned_cols=62  Identities=26%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhCC--CCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCCCchHhHhHhC
Q 015331          108 SLLMEALERELP--SGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDGVNSVVAKWLG  169 (409)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  169 (409)
                      ..+.+.|.+.+.  +++|+++++|++|..+++ .+.|++.+|+++++|.||.|.|.+..+.+.++
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~  293 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK  293 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence            456666666553  689999999999987654 45688888988999999999999888776664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02661 Putative thiazole synthesis

Probab=99.06  E-value=2.8e-09  Score=97.02  Aligned_cols=128  Identities=22%  Similarity=0.255  Sum_probs=77.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcce--eEE-----echhHHHHHHHcCCchHHHhhcccccCe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGF--AIT-----LWTNAWRALDAVGISDSLRQQHIQLQGM   75 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~--~~~-----~~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (409)
                      ++||+|||||++|+++|+.|++. |.+|+|+|+...++...+  +..     +.....++|+++|+.         ++. 
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd~-  161 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP---------YDE-  161 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC---------ccc-
Confidence            57999999999999999999986 899999999876533111  111     111133444444431         100 


Q ss_pred             EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEE------cC
Q 015331           76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNL------AD  145 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~------~~  145 (409)
                           .++                +. ...+-..+.+.|.+++   ++++++.++.+.++..+++.+ .|.+      .+
T Consensus       162 -----~dg----------------y~-vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~  219 (357)
T PLN02661        162 -----QEN----------------YV-VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN  219 (357)
T ss_pred             -----CCC----------------ee-EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc
Confidence                 000                00 0012223334444432   468999999999988766542 2221      11


Q ss_pred             --C------CEEecCEEEEcCCCchH
Q 015331          146 --G------AVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       146 --g------~~~~ad~vV~AdG~~s~  163 (409)
                        +      ..++|+.||.|+|..++
T Consensus       220 ~~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        220 HDTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             cCCCCccceeEEECCEEEEcCCCCCc
Confidence              1      26899999999996654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.05  E-value=3.1e-09  Score=104.74  Aligned_cols=110  Identities=26%  Similarity=0.334  Sum_probs=77.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+||||||+|+++|..|+++|++|+|+|+..     | +....        ..              .+.     + 
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-----G-G~~~~--------~~--------------~~~-----~-  256 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-----G-GQVLD--------TM--------------GIE-----N-  256 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----C-Ceeec--------cC--------------ccc-----c-
Confidence            5899999999999999999999999999997531     1 10000        00              000     0 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                        ...  +.           .....++.+.|.+.+.  +++++++++|.++...++.+.|.+.++.++.+|.||.|+|..
T Consensus       257 --~~~--~~-----------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        257 --FIS--VP-----------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             --cCC--CC-----------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence              000  00           1223344455544332  688999999999998878888998888889999999999986


Q ss_pred             h
Q 015331          162 S  162 (409)
Q Consensus       162 s  162 (409)
                      +
T Consensus       322 ~  322 (517)
T PRK15317        322 W  322 (517)
T ss_pred             c
Confidence            5

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.05  E-value=2.2e-09  Score=104.78  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..++||||||||++|+++|+.+++.|.+|+|+||.+.
T Consensus         1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            67789999999999999999999999999999999874

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.04  E-value=2.2e-09  Score=106.50  Aligned_cols=113  Identities=25%  Similarity=0.400  Sum_probs=74.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |.+.+||+||||||||+++|..|+++|++|+|||+...    +..+....                       .  ..  
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----GG~~~~~~-----------------------~--i~--   49 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----GGQITITS-----------------------E--VV--   49 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----CceEEecc-----------------------c--cc--
Confidence            77789999999999999999999999999999998531    11110000                       0  00  


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                               .++.        ...+....+.+.+.+.+.  ++++ .+++|+.++.+++.+.|.+.++ .+.++.||.|+
T Consensus        50 ---------~~pg--------~~~~~~~~l~~~l~~~~~~~gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlAT  110 (555)
T TIGR03143        50 ---------NYPG--------ILNTTGPELMQEMRQQAQDFGVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIAT  110 (555)
T ss_pred             ---------cCCC--------CcCCCHHHHHHHHHHHHHHcCCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECC
Confidence                     0000        001223344444443321  5666 4778988888777677877666 58999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |.++.
T Consensus       111 Ga~p~  115 (555)
T TIGR03143       111 GASPR  115 (555)
T ss_pred             CCccC
Confidence            98753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.03  E-value=3.4e-08  Score=96.14  Aligned_cols=60  Identities=33%  Similarity=0.532  Sum_probs=45.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ce----eEE----echhHHHHHHHcCCchHH
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GF----AIT----LWTNAWRALDAVGISDSL   65 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~----~~~----~~~~~~~~l~~~gl~~~~   65 (409)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++..        +.    |..    ..++..++++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            5899999999999999999999999999998865321        11    000    234577888889887654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02976 amine oxidase

Probab=99.02  E-value=1.4e-07  Score=98.74  Aligned_cols=36  Identities=42%  Similarity=0.651  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            479999999999999999999999999999998654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.02  E-value=3.3e-08  Score=96.20  Aligned_cols=59  Identities=29%  Similarity=0.433  Sum_probs=45.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc------------eeE----EechhHHHHHHHcCCchH
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG------------FAI----TLWTNAWRALDAVGISDS   64 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~------------~~~----~~~~~~~~~l~~~gl~~~   64 (409)
                      +|+|||||++||++|+.|+++|++|+|+|+.+.++...            .|.    ...++..++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            58999999999999999999999999999987543211            111    123677889999998643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02529 lysine-specific histone demethylase 1

Probab=99.02  E-value=4.5e-08  Score=98.49  Aligned_cols=36  Identities=36%  Similarity=0.666  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+++|..|+++|++|+|+|+++.+
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~  195 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence            579999999999999999999999999999998753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.01  E-value=5.1e-09  Score=102.01  Aligned_cols=147  Identities=19%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHH-HHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWR-ALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||+||+.+|..+++.|.+|+|+|++... ...+|.-.+...+.. +.++++..............+.+...+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~   80 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS   80 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence            69999999999999999999999999999987532 111121111110111 2222211110000000000111111100


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEe-C-CeEEEEEcCCCEEecCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEES-G-LFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~-~-~~~~v~~~~g~~~~ad~vV~A  157 (409)
                      ..       ...  . ......+++..+.+.+.+.+   +++.++.+ .|+++..+ + ....|.+.+|..+.|+.||+|
T Consensus        81 sk-------gpA--V-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILA  149 (617)
T TIGR00136        81 SK-------GPA--V-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIIT  149 (617)
T ss_pred             CC-------CCc--c-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEc
Confidence            00       000  0 01113678888888886654   35667554 67777544 3 445688888889999999999


Q ss_pred             CCCch
Q 015331          158 DGVNS  162 (409)
Q Consensus       158 dG~~s  162 (409)
                      +|.+.
T Consensus       150 TGtfL  154 (617)
T TIGR00136       150 TGTFL  154 (617)
T ss_pred             cCccc
Confidence            99995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.00  E-value=5.5e-09  Score=102.85  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=75.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||||+++|..|++.|++|+|+|...  +  |.  ...        ..              .+..+    
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~--G--G~--~~~--------~~--------------~~~~~----  258 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI--G--GQ--VKD--------TV--------------GIENL----  258 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--C--Cc--ccc--------Cc--------------Ccccc----
Confidence            35899999999999999999999999999997421  1  10  000        00              00000    


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                          ..  ..           .....++.+.+.+.+  .+++++.+++|.+++..++.+.|++.++..+.+|.||.|+|.
T Consensus       259 ----~~--~~-----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa  321 (515)
T TIGR03140       259 ----IS--VP-----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA  321 (515)
T ss_pred             ----cc--cC-----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence                00  00           011223333333322  268999999999998887788888888888999999999998


Q ss_pred             ch
Q 015331          161 NS  162 (409)
Q Consensus       161 ~s  162 (409)
                      ..
T Consensus       322 ~~  323 (515)
T TIGR03140       322 RW  323 (515)
T ss_pred             Cc
Confidence            64

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.00  E-value=7.7e-09  Score=95.89  Aligned_cols=73  Identities=15%  Similarity=0.098  Sum_probs=53.8

Q ss_pred             ccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe-EEEEEcC-----CCEEecCEEEEcCCCchH-hHhHhCCCCC
Q 015331          104 SVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF-KLVNLAD-----GAVFKTKVLIGCDGVNSV-VAKWLGFKKP  173 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~-~~v~~~~-----g~~~~ad~vV~AdG~~s~-vr~~lg~~~~  173 (409)
                      -++-..|-+.|.+.+   ++.+++++++|+++++.+++ |.|++.+     ..++++++|++..|..|. +.+..|+++.
T Consensus       177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~  256 (488)
T PF06039_consen  177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEG  256 (488)
T ss_pred             cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhh
Confidence            355555666665544   46899999999999998766 9988743     247999999999999984 5667777654


Q ss_pred             ccc
Q 015331          174 AFA  176 (409)
Q Consensus       174 ~~~  176 (409)
                      .-+
T Consensus       257 ~gy  259 (488)
T PF06039_consen  257 KGY  259 (488)
T ss_pred             ccc
Confidence            433

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.99  E-value=7.6e-09  Score=84.91  Aligned_cols=140  Identities=20%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             EEECCCHHHHHHHHHHHHc-----CCceEEEeCCCccCCcceeEEechh-HHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            8 VIVGAGIAGLTTSLALHRL-----GIRSLVLESSESLRVTGFAITLWTN-AWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         8 vIIGgG~aGl~~A~~L~~~-----g~~V~v~E~~~~~~~~~~~~~~~~~-~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +||||||+|++++..|.+.     ..+|+|||+.+.    +.|..+.+. ....+-  +...........-.+..+..|-
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~ll--N~~a~~~s~~~~~~~~~f~~Wl   74 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSHLL--NTPADQMSLFPDDPGDDFVDWL   74 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHHhh--cccccccccccccCCCCHHHHH
Confidence            5999999999999999887     468999998543    333333221 111111  1110000000000001111111


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhh-------CC-CCeEE-eCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERE-------LP-SGTIR-YSSKVVSVEESGLFKLVNLADGAVFKTK  152 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~-------~~-~~~i~-~~~~v~~v~~~~~~~~v~~~~g~~~~ad  152 (409)
                      .....     ..  .........++|..+-++|.+.       ++ ++++. ...+|+++...++++.|.+.+|..+.+|
T Consensus        75 ~~~~~-----~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d  147 (156)
T PF13454_consen   75 RANGA-----DE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD  147 (156)
T ss_pred             HhcCc-----cc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence            00000     00  0001112256666555555432       22 34443 4779999999999999999999999999


Q ss_pred             EEEEcCCC
Q 015331          153 VLIGCDGV  160 (409)
Q Consensus       153 ~vV~AdG~  160 (409)
                      .||.|+|.
T Consensus       148 ~VvLa~Gh  155 (156)
T PF13454_consen  148 AVVLATGH  155 (156)
T ss_pred             EEEECCCC
Confidence            99999994

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.99  E-value=1.3e-08  Score=99.98  Aligned_cols=38  Identities=34%  Similarity=0.563  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .++||||||||++|+++|+.+++.|.+|+|+||.+...
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G   97 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG   97 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            36899999999999999999999999999999988643

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.98  E-value=1.3e-07  Score=83.53  Aligned_cols=37  Identities=30%  Similarity=0.545  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~   40 (409)
                      ++||+|||||..|+++|+-|+++    |++|+|+|++....
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt  126 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT  126 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence            57999999999999999999763    79999999998653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.98  E-value=5.3e-08  Score=98.46  Aligned_cols=36  Identities=36%  Similarity=0.646  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+++|+.|+++|++|+|+|++..+
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            578999999999999999999999999999998765

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.96  E-value=1.2e-08  Score=98.95  Aligned_cols=34  Identities=35%  Similarity=0.701  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~   39 (409)
                      ||||||||++|+++|+.++++| .+|+|+||.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999999 999999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.95  E-value=4e-09  Score=103.01  Aligned_cols=36  Identities=28%  Similarity=0.636  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |.+.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            778999999999999999999999999999999985

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.93  E-value=7.6e-09  Score=100.79  Aligned_cols=39  Identities=31%  Similarity=0.584  Sum_probs=36.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+.++||+||||||+|+.+|..|++.|.+|+|+|+.+.+
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~   39 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL   39 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            778899999999999999999999999999999987543

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.92  E-value=3.3e-08  Score=95.12  Aligned_cols=38  Identities=32%  Similarity=0.544  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |..++||||||+|.|||++|+.++ .|.+|+|+||.+..
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            666799999999999999999985 79999999998754

>PLN03000 amine oxidase

Probab=98.92  E-value=4.3e-07  Score=92.12  Aligned_cols=36  Identities=39%  Similarity=0.671  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+.+|..|++.|++|+|+|+++.+
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            479999999999999999999999999999998764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.90  E-value=1.2e-07  Score=87.90  Aligned_cols=38  Identities=45%  Similarity=0.706  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~   40 (409)
                      ...+|||||||+|||+||..|.+.| .+|+|+|..+.++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            3468999999999999999999665 5899999988653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.89  E-value=1e-08  Score=95.83  Aligned_cols=124  Identities=17%  Similarity=0.234  Sum_probs=77.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ceeEEechhHHHHHHHcCCch-HHHhhcccccCe
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GFAITLWTNAWRALDAVGISD-SLRQQHIQLQGM   75 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~   75 (409)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+.....        ......+..+...+...|++. ++...+.    .
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l   78 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L   78 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence            59999999999999999999999999999987654221        122334445566777788775 3333222    1


Q ss_pred             EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331           76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK  152 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad  152 (409)
                      .+... +     ....+      ......++|..+.+.|.+.+   ++++++ ..+|+++. +          +      
T Consensus        79 ~~~aa-d-----~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~-~----------~------  128 (436)
T PRK05335         79 IMEAA-D-----AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP-E----------D------  128 (436)
T ss_pred             heecc-c-----ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc-c----------C------
Confidence            11110 0     00011      11123678888888888765   456776 55777764 1          1      


Q ss_pred             EEEEcCCCch
Q 015331          153 VLIGCDGVNS  162 (409)
Q Consensus       153 ~vV~AdG~~s  162 (409)
                      .||+|+|..+
T Consensus       129 ~viiatG~~~  138 (436)
T PRK05335        129 ITIIATGPLT  138 (436)
T ss_pred             CEEEeCCCCc
Confidence            6777777754

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.89  E-value=7.6e-08  Score=92.12  Aligned_cols=84  Identities=17%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCchHh-HhHhCCCCCcccCce
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKPAFAGRS  179 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~~~~~~~~~  179 (409)
                      .++...+++.|...+.  ++.|..++.|+++... ++.+.|.+..|. +++..+|+|+|.|... -+..+...+-.+-..
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H  261 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPMHH  261 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceeeee
Confidence            6888889999887664  7899999999999754 455678888886 9999999999999853 444466655554444


Q ss_pred             eEEEeeecC
Q 015331          180 DIRGCTDFK  188 (409)
Q Consensus       180 ~~~~~~~~~  188 (409)
                      ++.-....+
T Consensus       262 ~YvvT~~Ie  270 (856)
T KOG2844|consen  262 AYVVTSRIE  270 (856)
T ss_pred             eEEEecccC
Confidence            444333333

>PRK06370 mercuric reductase; Validated

Probab=98.89  E-value=9.1e-09  Score=100.28  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=34.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.++||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            6778999999999999999999999999999999864

>PRK10262 thioredoxin reductase; Provisional

Probab=98.88  E-value=2.9e-08  Score=92.04  Aligned_cols=112  Identities=18%  Similarity=0.263  Sum_probs=69.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++.+||+||||||||+++|..|+++|++|++||+.. ...  . +...                         ...+.  
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg--~-~~~~-------------------------~~~~~--   52 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGG--Q-LTTT-------------------------TEVEN--   52 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCC--c-eecC-------------------------ceECC--
Confidence            467899999999999999999999999999999542 211  0 0000                         00000  


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                               ++..       ...++...+.+.+.+...  +.++..+ +|..++..++.++++..++ .+.+|.||.|+|
T Consensus        53 ---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG  114 (321)
T PRK10262         53 ---------WPGD-------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATG  114 (321)
T ss_pred             ---------CCCC-------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCC
Confidence                     0000       001222333333333221  3455555 5777887777777766544 689999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       115 ~~~  117 (321)
T PRK10262        115 ASA  117 (321)
T ss_pred             CCC
Confidence            875

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.87  E-value=2.4e-08  Score=98.77  Aligned_cols=37  Identities=43%  Similarity=0.686  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            3589999999999999999999999999999998754

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.87  E-value=4.5e-08  Score=97.77  Aligned_cols=34  Identities=35%  Similarity=0.635  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ||+|||||+||+++|+.+++.|.+|+|+||.+..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            8999999999999999999999999999998653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK09897 hypothetical protein; Provisional

Probab=98.86  E-value=1.1e-08  Score=99.59  Aligned_cols=143  Identities=15%  Similarity=0.113  Sum_probs=77.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechh--HHHHHHHc---CCchHHHhhcccccCeEE
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTN--AWRALDAV---GISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~--~~~~l~~~---gl~~~~~~~~~~~~~~~~   77 (409)
                      .+|+||||||+|+++|..|.+.+  .+|+|||++..+   |.|..+...  +..++-..   .+..         ....+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~---------~~~~f   69 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPP---------IYCTY   69 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCC---------ChHHH
Confidence            48999999999999999998864  589999997653   334444431  22222111   0100         00001


Q ss_pred             EeccCCcc---ccc--ccccccCCCCCccccccC----HHHHHHHHHhhCC--C--CeEEeCceEEEEEEeCCeEEEEEc
Q 015331           78 ASSVSCQP---ASE--ISFKTKGNRGGHEVRSVK----RSLLMEALERELP--S--GTIRYSSKVVSVEESGLFKLVNLA  144 (409)
Q Consensus        78 ~~~~~~~~---~~~--~~~~~~~~~~~~~~~~i~----r~~l~~~l~~~~~--~--~~i~~~~~v~~v~~~~~~~~v~~~  144 (409)
                      ..|.....   ...  ....... ...+..+.+.    +..+. .+.+.++  +  +.++.+++|++++..++++.|++.
T Consensus        70 ~~Wl~~~~~~~~~~~g~~~~~l~-~~~f~PR~l~G~YL~~~f~-~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~  147 (534)
T PRK09897         70 LEWLQKQEDSHLQRYGVKKETLH-DRQFLPRILLGEYFRDQFL-RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATN  147 (534)
T ss_pred             HHHhhhhhHHHHHhcCCcceeec-CCccCCeecchHHHHHHHH-HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEEC
Confidence            11100000   000  0000000 0001111111    22222 2333322  2  577889999999999889999886


Q ss_pred             C-CCEEecCEEEEcCCCc
Q 015331          145 D-GAVFKTKVLIGCDGVN  161 (409)
Q Consensus       145 ~-g~~~~ad~vV~AdG~~  161 (409)
                      + +..+.+|.||.|+|..
T Consensus       148 ~gg~~i~aD~VVLAtGh~  165 (534)
T PRK09897        148 QDLPSETFDLAVIATGHV  165 (534)
T ss_pred             CCCeEEEcCEEEECCCCC
Confidence            5 4679999999999964

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.86  E-value=1e-08  Score=99.77  Aligned_cols=37  Identities=27%  Similarity=0.569  Sum_probs=33.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+ +|||+||||||+|+.+|..++++|.+|+|+|+...
T Consensus         1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~   37 (466)
T PRK06115          1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRST   37 (466)
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            54 59999999999999999999999999999997543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.86  E-value=4.7e-08  Score=97.44  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE----EEEcCCC--EEecCEEEEcCCCchHh
Q 015331          108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL----VNLADGA--VFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~----v~~~~g~--~~~ad~vV~AdG~~s~v  164 (409)
                      ..+...|.+.+   ++++++.++.++++..+++.+.    +...++.  .+.|+.||.|+|..|.+
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            34556666543   3678999999999887666543    2334564  68999999999999865

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.85  E-value=3.7e-08  Score=95.79  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +||+|||||+||+++|+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999864

>TIGR00551 nadB L-aspartate oxidase

Probab=98.84  E-value=5.6e-08  Score=95.16  Aligned_cols=57  Identities=9%  Similarity=0.037  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE-EEEcC-C--CEEecCEEEEcCCCchHh
Q 015331          108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL-VNLAD-G--AVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~-v~~~~-g--~~~~ad~vV~AdG~~s~v  164 (409)
                      ..+.+.|.+.+   +++++++++.|+++..+++.+. |...+ +  ..+.++.||.|+|.+|.+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            45666666654   3689999999999987665543 43332 2  368999999999999975

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=7.5e-08  Score=96.17  Aligned_cols=39  Identities=31%  Similarity=0.523  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcC---CceEEEeCCCccC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLG---IRSLVLESSESLR   40 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g---~~V~v~E~~~~~~   40 (409)
                      +.++||+|||||+|||++|+.+++.|   .+|+|+||.+..+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            35689999999999999999999998   8999999987543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.83  E-value=2.9e-08  Score=98.61  Aligned_cols=37  Identities=41%  Similarity=0.721  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.++||+|||+|.|||++|+.+++.|.+|+|+||.+
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            7888999999999999999999999999999999988

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.83  E-value=1e-07  Score=95.51  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcce--eE-Eec----h--hHHHHHHHc-----CCch-HHH
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGF--AI-TLW----T--NAWRALDAV-----GISD-SLR   66 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~--~~-~~~----~--~~~~~l~~~-----gl~~-~~~   66 (409)
                      ++||+|||||+|||++|+.+++.  |.+|+|+||.+..+....  +. .+.    .  ......+.+     ++.+ ++.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            47999999999999999999998  999999999875332210  10 111    0  011111111     1111 000


Q ss_pred             h----hc-c-----cccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEE
Q 015331           67 Q----QH-I-----QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVE  133 (409)
Q Consensus        67 ~----~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~  133 (409)
                      .    .. .     .-.++.+....++...    .  .    ......+....+.+.|.+.+   .++++++++.|+++.
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~----~--~----g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li  160 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYV----R--R----GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL  160 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCcc----c--c----CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence            0    00 0     0012222211111100    0  0    00000123445666665544   248999999999987


Q ss_pred             EeCCeEE-E---EEcCCC--EEecCEEEEcCCCchH
Q 015331          134 ESGLFKL-V---NLADGA--VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       134 ~~~~~~~-v---~~~~g~--~~~ad~vV~AdG~~s~  163 (409)
                      .+++.+. |   ...++.  .+.|+.||.|+|..+.
T Consensus       161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        161 VDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            6665432 2   233453  6899999999998874

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.82  E-value=6e-08  Score=93.40  Aligned_cols=57  Identities=25%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEc---CCC--EEecCEEEEcCCCchH
Q 015331          107 RSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLA---DGA--VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       107 r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~---~g~--~~~ad~vV~AdG~~s~  163 (409)
                      -..+.+.|.+.+.  +++|+++++++++..++++++ |...   +++  +++|+.||.|+|..+.
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4566666666552  689999999999988877654 3333   444  6789999999999995

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06116 glutathione reductase; Validated

Probab=98.82  E-value=4.2e-08  Score=95.28  Aligned_cols=36  Identities=22%  Similarity=0.534  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |+.++||+||||||+|+++|..|+++|.+|+|||+.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            777899999999999999999999999999999986

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=8.3e-08  Score=95.77  Aligned_cols=37  Identities=32%  Similarity=0.645  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      .++||+|||||+||++||+.+++.  |.+|+|+||....
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            468999999999999999999987  4899999998653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=7.3e-08  Score=96.91  Aligned_cols=36  Identities=31%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+|+...+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            579999999999999999999999999999986544

>PRK07121 hypothetical protein; Validated

Probab=98.81  E-value=1.5e-07  Score=92.33  Aligned_cols=37  Identities=35%  Similarity=0.593  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            3589999999999999999999999999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.80  E-value=5.7e-08  Score=94.14  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++++||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            147999999999999999999999999999999875

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.80  E-value=1.5e-07  Score=67.62  Aligned_cols=80  Identities=28%  Similarity=0.394  Sum_probs=62.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP   85 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+...                  +.+                      
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~~~----------------------   40 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------FDP----------------------   40 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------SSH----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------cCH----------------------
Confidence            5899999999999999999999999999988854310                  000                      


Q ss_pred             cccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC
Q 015331           86 ASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG  146 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g  146 (409)
                                         -.+..+.+.|.+.  ++++++++.+..++.++++++|+++||
T Consensus        41 -------------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   41 -------------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             -------------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                               0123345555554  899999999999999988777888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14694 putative mercuric reductase; Provisional

Probab=98.79  E-value=1.5e-08  Score=98.86  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+++|..|+++|.+|+|||+..
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            46899999999999999999999999999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.79  E-value=1.4e-07  Score=93.80  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE----EEEcCCC--EEecCEEEEcCCCchHh
Q 015331          108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL----VNLADGA--VFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~----v~~~~g~--~~~ad~vV~AdG~~s~v  164 (409)
                      ..+.+.|.+.+   +++.++.++.++++..+++.+.    +...+|+  .+.|+.||.|+|..+.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            45666666544   4678999999999887666543    2334564  68899999999999864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.78  E-value=4e-08  Score=95.86  Aligned_cols=39  Identities=33%  Similarity=0.554  Sum_probs=35.1

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+ .++||+||||||+|+.+|+.|+++|.+|+|||+.+.+
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~   40 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV   40 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence            44 4799999999999999999999999999999987654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.78  E-value=1.2e-07  Score=90.64  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      |.+++||+|||+|++|+.+|..|++.|.+|+++|+++..+.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence            78899999999999999999999999999999999986543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.78  E-value=2e-08  Score=97.25  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            689999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.78  E-value=1.6e-08  Score=69.89  Aligned_cols=34  Identities=38%  Similarity=0.623  Sum_probs=30.4

Q ss_pred             EECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc
Q 015331            9 IVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT   42 (409)
Q Consensus         9 IIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~   42 (409)
                      |||||++||++|+.|+++|++|+|+|+++.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~   34 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR   34 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence            8999999999999999999999999999876543

...

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.78  E-value=3.7e-07  Score=89.07  Aligned_cols=46  Identities=15%  Similarity=0.118  Sum_probs=39.0

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEEcCCCchHhH
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIGCDGVNSVVA  165 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~s~vr  165 (409)
                      +++++.+++|.+++.+++.+.+.+.+|  .++.+|.||.|.|..+.+.
T Consensus       225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            689999999999988877787877777  4799999999999877543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.77  E-value=4.8e-08  Score=95.40  Aligned_cols=35  Identities=29%  Similarity=0.620  Sum_probs=33.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      |..++||+||||||+|+++|..+++.|.+|+|+|+
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            77789999999999999999999999999999998

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.76  E-value=1e-08  Score=88.15  Aligned_cols=113  Identities=27%  Similarity=0.368  Sum_probs=68.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP   85 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      ||+||||||||+++|..|++.|.+|+|+|+.+.......  .+.   ...+....   ......                
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~--~~~---~~~~~~~~---~~~~~~----------------   56 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG--CIP---SPLLVEIA---PHRHEF----------------   56 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS--HHH---HHHHHHHH---HHHHHH----------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc--ccc---cccccccc---cccccc----------------
Confidence            799999999999999999999999999987764211100  000   00000000   000000                


Q ss_pred             cccccccccCCCCCccccccCHH--HHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-----EE---EEcCCCEEecCEEE
Q 015331           86 ASEISFKTKGNRGGHEVRSVKRS--LLMEALERELPSGTIRYSSKVVSVEESGLFK-----LV---NLADGAVFKTKVLI  155 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~--~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-----~v---~~~~g~~~~ad~vV  155 (409)
                                         ....  .+.+.+...  +++++.++++.+++.....+     .+   ...++.++.+|+||
T Consensus        57 -------------------~~~~~~~~~~~~~~~--~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lv  115 (201)
T PF07992_consen   57 -------------------LPARLFKLVDQLKNR--GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLV  115 (201)
T ss_dssp             -------------------HHHHHGHHHHHHHHH--THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEE
T ss_pred             -------------------ccccccccccccccc--eEEEeeccccccccccccccccCcccceeeccCCceEecCCeee
Confidence                               0000  233333322  67888889999998877742     22   22345589999999


Q ss_pred             EcCCCchH
Q 015331          156 GCDGVNSV  163 (409)
Q Consensus       156 ~AdG~~s~  163 (409)
                      .|+|..+.
T Consensus       116 iAtG~~~~  123 (201)
T PF07992_consen  116 IATGSRPR  123 (201)
T ss_dssp             EESTEEEE
T ss_pred             ecCccccc
Confidence            99997653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.75  E-value=4.4e-08  Score=94.86  Aligned_cols=35  Identities=20%  Similarity=0.504  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+.+|..|++.|.+|+|+|+..
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            46999999999999999999999999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=8.3e-08  Score=93.60  Aligned_cols=35  Identities=23%  Similarity=0.578  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46899999999999999999999999999999875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.73  E-value=2e-08  Score=97.95  Aligned_cols=37  Identities=30%  Similarity=0.561  Sum_probs=34.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++++||+||||||+|+++|..|+++|.+|+|+|++.
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~   37 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY   37 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            6677999999999999999999999999999999863

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.72  E-value=3.4e-08  Score=94.16  Aligned_cols=38  Identities=32%  Similarity=0.626  Sum_probs=35.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.+||++||||||+|..+|..+++.|.+|.++|+...
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~   38 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER   38 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC
Confidence            67789999999999999999999999999999999963

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=3e-07  Score=92.45  Aligned_cols=36  Identities=33%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||+||+++|+.+++.|.+|+|+||.+..
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            579999999999999999999999999999998643

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.71  E-value=1.9e-07  Score=91.67  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~   37 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR   37 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence            36899999999999999999976 8999999998754

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.70  E-value=8.6e-07  Score=88.14  Aligned_cols=37  Identities=30%  Similarity=0.624  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5789999999999999999999999999999998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=3.3e-07  Score=91.18  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||.+.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            468999999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.69  E-value=7.6e-08  Score=93.19  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++++||+||||||||+++|..|++.|.+|+|||+.+.
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            1479999999999999999999999999999998864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=3.3e-07  Score=90.98  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||.||+++|+.+ +.|.+|+|+||.+.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            57999999999999999999 89999999999764

>PLN02507 glutathione reductase

Probab=98.67  E-value=1.8e-07  Score=91.68  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|||+||||||+|+.+|..++++|.+|+|+|+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            48999999999999999999999999999996

>PRK13748 putative mercuric reductase; Provisional

Probab=98.66  E-value=2.8e-07  Score=92.20  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||+|+++|..|+++|.+|+|||++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3589999999999999999999999999999987

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.66  E-value=5.5e-07  Score=89.98  Aligned_cols=37  Identities=24%  Similarity=0.569  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999998753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.64  E-value=4.5e-07  Score=91.43  Aligned_cols=37  Identities=30%  Similarity=0.519  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||||.|||++|+.+++.|.+|+|+|+.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4689999999999999999999999999999988754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.64  E-value=1.1e-07  Score=94.97  Aligned_cols=37  Identities=27%  Similarity=0.622  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+|++|+++|+.++++|.+|+|+||.+..
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4689999999999999999999999999999998764

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.62  E-value=6.2e-07  Score=89.78  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            57999999999999999999999999999999864

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=4.6e-08  Score=92.00  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHHHH-HHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRA-LDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |++.+||+|||||.||+-+|++.+|.|.+++++-.+.+ ....+|.-++...+.-. .++++...-+........++.+.
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r   80 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR   80 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence            56679999999999999999999999999999976653 22222322222111111 12221111111111111222222


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEE-eCC-eEEEEEcCCCEEecCE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEE-SGL-FKLVNLADGAVFKTKV  153 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~-~~~-~~~v~~~~g~~~~ad~  153 (409)
                      ..+...-...          .......++..+.+.+.+.+   ++..++.+ .|.++.. +++ .+.|.+.+|..+.|+.
T Consensus        81 ~LN~sKGPAV----------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~a  149 (621)
T COG0445          81 MLNSSKGPAV----------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKA  149 (621)
T ss_pred             hccCCCcchh----------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCE
Confidence            1111110000          00111345555555555444   34555555 5666655 443 4678999999999999


Q ss_pred             EEEcCCCc
Q 015331          154 LIGCDGVN  161 (409)
Q Consensus       154 vV~AdG~~  161 (409)
                      ||.++|.+
T Consensus       150 VVlTTGTF  157 (621)
T COG0445         150 VVLTTGTF  157 (621)
T ss_pred             EEEeeccc
Confidence            99999976

>PRK08275 putative oxidoreductase; Provisional

Probab=98.62  E-value=5.9e-07  Score=89.34  Aligned_cols=36  Identities=28%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      ++||+|||||.||++||+.+++.  |.+|+|+||.+..
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            47999999999999999999987  6899999998753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.62  E-value=6.6e-07  Score=89.76  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            579999999999999999999999999999998753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=7.2e-07  Score=89.18  Aligned_cols=37  Identities=32%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..++||+|||||+||+++|+.+++. .+|+|+||...
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~   38 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP   38 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence            34568999999999999999999986 89999999864

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.61  E-value=1.5e-07  Score=90.96  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=38.4

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      +.+|+++++|+.|+.++++++|.+.+|.++.||.||.|.......
T Consensus       223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~  267 (450)
T PF01593_consen  223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLK  267 (450)
T ss_dssp             GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred             CceeecCCcceeccccccccccccccceEEecceeeecCchhhhh
Confidence            458999999999999999999999999999999999888865543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02815 L-aspartate oxidase

Probab=98.59  E-value=7.8e-07  Score=88.54  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|.|||++|+.+++.| +|+|+||.+..
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            579999999999999999999999 99999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.58  E-value=8.1e-07  Score=89.20  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            579999999999999999999999999999998654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.57  E-value=1.3e-06  Score=87.20  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            3579999999999999999999999999999998643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.56  E-value=4.7e-07  Score=85.35  Aligned_cols=35  Identities=20%  Similarity=0.440  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            48999999999999999999999999999987653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.56  E-value=7.3e-07  Score=86.61  Aligned_cols=110  Identities=17%  Similarity=0.276  Sum_probs=69.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+|||||++|+++|..|++.+  .+|+|||+++......++               +         +    .+. ....
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~---------~----~~~-~~~~   52 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------L---------P----YFV-GGFF   52 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------C---------c----eEe-cccc
Confidence            7999999999999999999875  589999988753211000               0         0    000 0000


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc-CCCEEe--cCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA-DGAVFK--TKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~-~g~~~~--ad~vV~AdG~  160 (409)
                      ..             ...  .+.+  ..+.+.+  .+++++.+++|+.++.+++.+.+... ++.++.  +|.||.|+|.
T Consensus        53 ~~-------------~~~--~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~  113 (444)
T PRK09564         53 DD-------------PNT--MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA  113 (444)
T ss_pred             CC-------------HHH--hhcC--CHHHHHH--CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence            00             000  0111  0122222  26889999999999988777776542 355666  9999999998


Q ss_pred             chH
Q 015331          161 NSV  163 (409)
Q Consensus       161 ~s~  163 (409)
                      ...
T Consensus       114 ~~~  116 (444)
T PRK09564        114 RPI  116 (444)
T ss_pred             CCC
Confidence            653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.55  E-value=2.2e-06  Score=84.50  Aligned_cols=36  Identities=22%  Similarity=0.585  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            36899999999 9999999999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=98.55  E-value=2.3e-07  Score=91.56  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|||+||||||+|.++|..+++.|.+|+|||++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            36899999999999999999999999999999863

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=1.1e-06  Score=87.79  Aligned_cols=35  Identities=43%  Similarity=0.573  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            57999999999999999999999999999999753

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.55  E-value=6.9e-07  Score=87.89  Aligned_cols=34  Identities=35%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++||+|||+|.|||++|+.++  |.+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            3579999999999999999997  569999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=1.6e-06  Score=86.67  Aligned_cols=37  Identities=19%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||+|||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4679999999999999999999999999999988653

>TIGR02053 MerA mercuric reductase

Probab=98.54  E-value=2.7e-07  Score=90.02  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||+||||||+|+++|..|+++|.+|+|+|+.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.54  E-value=3.8e-07  Score=89.21  Aligned_cols=37  Identities=19%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+.+|..|+++|.+|+|+|+.+.+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~   51 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI   51 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            3689999999999999999999999999999987543

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.54  E-value=4.7e-07  Score=79.34  Aligned_cols=166  Identities=22%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCC---------cceeEEechhHHHH-HHHcC--C-chHHHh
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRV---------TGFAITLWTNAWRA-LDAVG--I-SDSLRQ   67 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~---------~~~~~~~~~~~~~~-l~~~g--l-~~~~~~   67 (409)
                      .++|+||||||++|++.|..|.-+  +.+|.|+|+......         ...|+.+.|+++.+ |.--|  + ++-..+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e  126 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE  126 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence            468999999999999999999876  899999999876421         13567777766533 00000  0 011111


Q ss_pred             hcccc------------------------------cCeEEEeccCCcccccccccccC--CCCCccccccCHHHHHHHHH
Q 015331           68 QHIQL------------------------------QGMVVASSVSCQPASEISFKTKG--NRGGHEVRSVKRSLLMEALE  115 (409)
Q Consensus        68 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~l~  115 (409)
                      ...+.                              .+.+....   ....++...-.+  .-..+..-.++...+...+.
T Consensus       127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg---~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~  203 (453)
T KOG2665|consen  127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEG---SEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG  203 (453)
T ss_pred             cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeecc---chhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence            11111                              11222111   011111000000  00011122455555555555


Q ss_pred             hhCC--CCeEEeCceEEEEEEeCCe-----EEEEEcCCCEEecCEEEEcCCCchHh-HhHhCCC
Q 015331          116 RELP--SGTIRYSSKVVSVEESGLF-----KLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFK  171 (409)
Q Consensus       116 ~~~~--~~~i~~~~~v~~v~~~~~~-----~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~  171 (409)
                      +.+.  +..+..|-++..+.++.+.     ++|.-..+++++++++|.|.|..|-- ....|.+
T Consensus       204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~  267 (453)
T KOG2665|consen  204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE  267 (453)
T ss_pred             HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence            5443  6788899999999877552     44544456789999999999998854 3333443

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.53  E-value=4e-06  Score=83.35  Aligned_cols=37  Identities=32%  Similarity=0.623  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.+++.|.+|+|||+.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998654

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.53  E-value=1.4e-06  Score=86.22  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+||+++|+.+++. .+|+|+||....
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            357999999999999999999987 899999998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.52  E-value=2.3e-06  Score=81.18  Aligned_cols=107  Identities=19%  Similarity=0.312  Sum_probs=79.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                . +.+                     
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------~-~~~---------------------  183 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------L-MPP---------------------  183 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------h-CCH---------------------
Confidence            57999999999999999999999999999986632100                0 000                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-  163 (409)
                                          -....+.+.|.+.  +++++++++|.+++.+++.+.+.+.+|+++.+|+||.|+|..+. 
T Consensus       184 --------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        184 --------------------EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             --------------------HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence                                0012344444433  78999999999998877778888999999999999999998653 


Q ss_pred             -hHhHhCCC
Q 015331          164 -VAKWLGFK  171 (409)
Q Consensus       164 -vr~~lg~~  171 (409)
                       +.+..|+.
T Consensus       242 ~l~~~~gl~  250 (377)
T PRK04965        242 ALARRAGLA  250 (377)
T ss_pred             HHHHHCCCC
Confidence             44555544

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.52  E-value=6.1e-06  Score=78.48  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=53.3

Q ss_pred             cccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          103 RSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       103 ~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      ..++...+...|.+.+. +++++++++|.+++.+++.+.|++.+|.+++||.||.|+|.++.
T Consensus       130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            36788889899888765 68999999999999888889999988888999999999999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.52  E-value=4.5e-06  Score=72.43  Aligned_cols=157  Identities=19%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC------CceEEEeCCCccC-CcceeE-------------EechhHHHHHHHcCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG------IRSLVLESSESLR-VTGFAI-------------TLWTNAWRALDAVGIS   62 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g------~~V~v~E~~~~~~-~~~~~~-------------~~~~~~~~~l~~~gl~   62 (409)
                      ...+|+|||||+.|.++|++|++++      ++|+|||...-.. ..|.+.             .+.+-+.++.+++  .
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L--s   86 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL--S   86 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH--H
Confidence            4578999999999999999999987      8999999875321 111111             1112222232322  2


Q ss_pred             hHHHhh-cccccCeEEEe----ccCCccccccc----ccc-------cCCCCCccccccCHHHHHHHHHhhCC---CCeE
Q 015331           63 DSLRQQ-HIQLQGMVVAS----SVSCQPASEIS----FKT-------KGNRGGHEVRSVKRSLLMEALERELP---SGTI  123 (409)
Q Consensus        63 ~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~----~~~-------~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i  123 (409)
                      +++... ...+.....+.    +.+.. ....+    .-.       ..........+++...|.+.+++.+.   ++++
T Consensus        87 deydGvnnwgYRaltTws~ka~~en~~-p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~l  165 (380)
T KOG2852|consen   87 DEYDGVNNWGYRALTTWSCKADWENTN-PAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKL  165 (380)
T ss_pred             HhhcCcccccceeeeEEEEEeecccCC-cccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence            222111 11111111111    01111 11111    000       00011223347888999999988763   4678


Q ss_pred             EeCceEEEEEEeCCeEE-EEEc---C-CCEEecCEEEEcCCCchH
Q 015331          124 RYSSKVVSVEESGLFKL-VNLA---D-GAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       124 ~~~~~v~~v~~~~~~~~-v~~~---~-g~~~~ad~vV~AdG~~s~  163 (409)
                      .++ +|.++..+.+++. +-..   + ......+.+|++.|.|+.
T Consensus       166 v~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  166 VFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             EEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence            777 6667753333322 2121   1 235678999999999984

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.51  E-value=1.1e-06  Score=85.12  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=70.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|||||||++|+.+|..|++.  +.+|+|||+++......++..               .-+ .      +  ..  ...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp---------------~~~-~------~--~~--~~~   56 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALP---------------YYI-G------E--VV--EDR   56 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcc---------------hhh-c------C--cc--CCH
Confidence            899999999999999999886  679999999875432221110               000 0      0  00  000


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-C--EEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-A--VFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~--~~~ad~vV~AdG~  160 (409)
                      .                ....+...    .+.++ .+++++.+++|++|+.++..+.+...++ +  ++.+|.||.|+|.
T Consensus        57 ~----------------~~~~~~~~----~~~~~-~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs  115 (438)
T PRK13512         57 K----------------YALAYTPE----KFYDR-KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA  115 (438)
T ss_pred             H----------------HcccCCHH----HHHHh-CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC
Confidence            0                00011111    22222 2688999999999998888777765432 2  4689999999998


Q ss_pred             chH
Q 015331          161 NSV  163 (409)
Q Consensus       161 ~s~  163 (409)
                      ...
T Consensus       116 ~~~  118 (438)
T PRK13512        116 SAN  118 (438)
T ss_pred             CCC
Confidence            753

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.51  E-value=1.8e-07  Score=87.58  Aligned_cols=56  Identities=20%  Similarity=0.367  Sum_probs=44.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHH
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDA   58 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~   58 (409)
                      .++||+|||||-.|.-+|+-.+-+|.+|.++|++++-. ..+.+--+-..+.+.|++
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek  122 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK  122 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence            45999999999999999999999999999999998753 233444455556666655

>PRK12839 hypothetical protein; Provisional

Probab=98.50  E-value=3.6e-06  Score=83.76  Aligned_cols=37  Identities=32%  Similarity=0.549  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|++|+++|+.++++|.+|+|+|+....
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.50  E-value=2.2e-06  Score=85.83  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=30.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            79999999999999999999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.50  E-value=3.7e-07  Score=95.23  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||||||++|+.|+++|++|+|||+.+.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~  340 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD  340 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence            46999999999999999999999999999998764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.49  E-value=6.5e-07  Score=86.50  Aligned_cols=58  Identities=17%  Similarity=0.028  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhC--CCCeEEeCceEEEEEEe--CCeEE-EEEc-CCCEEecCEEEEcCCCchHhH
Q 015331          108 SLLMEALEREL--PSGTIRYSSKVVSVEES--GLFKL-VNLA-DGAVFKTKVLIGCDGVNSVVA  165 (409)
Q Consensus       108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~--~~~~~-v~~~-~g~~~~ad~vV~AdG~~s~vr  165 (409)
                      ..+.+.|.+.+  .+++++++++|+++..+  ++.+. |... ++.++.++.||.|+|..+..+
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~  186 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANR  186 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence            34666665544  26899999999999875  33332 4433 334789999999999876543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.49  E-value=1.9e-06  Score=82.31  Aligned_cols=110  Identities=14%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      +.+.+|+|||||+||+.+|..|++.|.  +|+|+++.+.......     +          +...+...           
T Consensus         1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-----~----------l~~~~~~~-----------   54 (396)
T PRK09754          1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-----P----------LSKSMLLE-----------   54 (396)
T ss_pred             CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-----C----------CCHHHHCC-----------
Confidence            135689999999999999999999876  7999998764321100     0          10100000           


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                        ....  ..             .....    +.+.+  .+++++.++.|..++....  .|.+.+|.++.+|.||.|+|
T Consensus        55 --~~~~--~~-------------~~~~~----~~~~~--~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATG  109 (396)
T PRK09754         55 --DSPQ--LQ-------------QVLPA----NWWQE--NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATG  109 (396)
T ss_pred             --CCcc--cc-------------ccCCH----HHHHH--CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccC
Confidence              0000  00             00111    11222  2689999999999987654  45667888899999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       110 s~~  112 (396)
T PRK09754        110 AAA  112 (396)
T ss_pred             CCC
Confidence            876

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.48  E-value=1.1e-06  Score=78.14  Aligned_cols=43  Identities=14%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       121 ~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      ..+..++.|..+..-++++.+...+|++-++|-||.|+-..-.
T Consensus       232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqA  274 (447)
T COG2907         232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQA  274 (447)
T ss_pred             ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHH
Confidence            3688899999999999999999999999999999999876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.47  E-value=8.9e-07  Score=86.37  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +++||+||||||+|+++|..|++.|.+|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999999999999999999999999983

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.47  E-value=1.4e-07  Score=87.35  Aligned_cols=149  Identities=17%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHH--HHHHHcCCchHHHhhcccccCeEEE--
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAW--RALDAVGISDSLRQQHIQLQGMVVA--   78 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~~--   78 (409)
                      .+|+++||.||++|++|..|...+ .++..||+.+....... ..+....+  .+|+      ++.....|.....+.  
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-mll~~~~~q~~fl~------Dlvt~~~P~s~~sflnY   74 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-MLLPGARMQVSFLK------DLVTLRDPTSPFSFLNY   74 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-G--SS-B-SS-TTS------SSSTTT-TTSTTSHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-cCCCCCcccccccc------ccCcCcCCCCcccHHHH
Confidence            479999999999999999999876 89999999886543321 11110000  0111      111111111111110  


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC----eEEEEEc----CCCE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL----FKLVNLA----DGAV  148 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~----~~~v~~~----~g~~  148 (409)
                      ....++....++.         ....+.|.++.+++.-.+.  +..++++++|++|+..++    .++|.+.    ++.+
T Consensus        75 L~~~~rl~~f~~~---------~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~  145 (341)
T PF13434_consen   75 LHEHGRLYEFYNR---------GYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET  145 (341)
T ss_dssp             HHHTT-HHHHHHH-----------SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE
T ss_pred             HHHcCChhhhhhc---------CCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE
Confidence            0011111111111         1125678888887765443  245999999999987654    4888873    3458


Q ss_pred             EecCEEEEcCCCchHhHhHh
Q 015331          149 FKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       149 ~~ad~vV~AdG~~s~vr~~l  168 (409)
                      +.|+.||.|+|....+...+
T Consensus       146 ~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  146 YRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             EEESEEEE----EE---GGG
T ss_pred             EEeCeEEECcCCCCCCCcch
Confidence            99999999999665554443

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.46  E-value=2.3e-07  Score=90.61  Aligned_cols=38  Identities=34%  Similarity=0.628  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +.+||||||||+.||+||..|+++|++|+|+||+..++
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            46899999999999999999999999999999988653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.46  E-value=2.1e-06  Score=83.66  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESS   36 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~   36 (409)
                      +++|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus         1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         1 SKAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CCccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            3579999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.46  E-value=8.2e-07  Score=87.11  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |+..|||+||||||+|+.+|..|+++|.+|+|+|+.
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            444689999999999999999999999999999973

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.45  E-value=2e-06  Score=85.26  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|.||+++|+.++ .|.+|+|+||.+..
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~   43 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK   43 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence            4689999999999999999996 49999999998754

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.45  E-value=2.8e-07  Score=98.85  Aligned_cols=37  Identities=24%  Similarity=0.524  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            3589999999999999999999999999999998764

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.44  E-value=4e-06  Score=83.68  Aligned_cols=37  Identities=32%  Similarity=0.618  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+|++|+++|+.++++|.+|+|+||.+..
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            4689999999999999999999999999999998754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.44  E-value=1.1e-06  Score=90.67  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||||+++|+.|+++|++|+|||+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            368999999999999999999999999999988753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.43  E-value=1.1e-06  Score=85.59  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .||+||||||+|+.+|..++++|.+|+|+|+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            389999999999999999999999999999875

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.42  E-value=9.5e-06  Score=80.57  Aligned_cols=36  Identities=36%  Similarity=0.732  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            36899999999 8999999999999999999998754

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.42  E-value=5.4e-06  Score=82.89  Aligned_cols=36  Identities=31%  Similarity=0.638  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|++|+++|+.++++|.+|+|+|+.+..
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            579999999999999999999999999999998754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.41  E-value=7.6e-06  Score=79.56  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~   40 (409)
                      +.+|+|||||+|||++|..|++.    |.+|+|+|+.+.++
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            46999999999999999999995    68999999998653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.41  E-value=1.2e-06  Score=85.19  Aligned_cols=33  Identities=18%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            899999999999999999999999999998753

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.40  E-value=3.3e-06  Score=89.43  Aligned_cols=37  Identities=35%  Similarity=0.606  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||||||||++|+.|++.|.+|+|+|+.+.+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3579999999999999999999999999999988764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.40  E-value=4.6e-06  Score=77.14  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=44.0

Q ss_pred             HHHHHHHhhCC--CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCch
Q 015331          109 LLMEALERELP--SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      ++.+.+.+.+.  +++++|+++|.+++..++. ..|++++|.++.+|.||.|-|..+
T Consensus       174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence            44455555543  6899999999999988774 668889999999999999999876

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.38  E-value=6.4e-06  Score=80.40  Aligned_cols=100  Identities=23%  Similarity=0.319  Sum_probs=76.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------  217 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------LDDE-------------------  217 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------CCHH-------------------
Confidence            358999999999999999999999999999987632100                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                            .+..+.+.|.+.  +++++.+++|+.++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus       218 ----------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        218 ----------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             ----------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence                                  012344444433  78999999999998877778888888888999999999998775


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       274 ~  274 (461)
T PRK05249        274 T  274 (461)
T ss_pred             c
Confidence            4

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.37  E-value=5.4e-06  Score=82.66  Aligned_cols=34  Identities=24%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHH----HcCCceEEEeCCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALH----RLGIRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~----~~g~~V~v~E~~~~~   39 (409)
                      ||+|||||.|||+||+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.37  E-value=6.3e-06  Score=80.48  Aligned_cols=99  Identities=20%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                  +.++                    
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~--------------------  214 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------EDKE--------------------  214 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------CCHH--------------------
Confidence            57999999999999999999999999999987642110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                                          + ...+.+.|.+.  +++++.+++|.+++.+++.+.+.+.++   +++.+|.||.|.|..
T Consensus       215 --------------------~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~  271 (462)
T PRK06416        215 --------------------I-SKLAERALKKR--GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR  271 (462)
T ss_pred             --------------------H-HHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence                                0 12233444433  789999999999998877787877665   579999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       272 p~~  274 (462)
T PRK06416        272 PNT  274 (462)
T ss_pred             cCC
Confidence            654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.36  E-value=1.6e-06  Score=81.08  Aligned_cols=147  Identities=18%  Similarity=0.096  Sum_probs=79.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--C-CceEEEeCCCccCCcceeEEechhHHHHHHHc-----CCc-hHHHhhcccccCe
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--G-IRSLVLESSESLRVTGFAITLWTNAWRALDAV-----GIS-DSLRQQHIQLQGM   75 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~-----gl~-~~~~~~~~~~~~~   75 (409)
                      ++|+|||||++|+.+|..|.+.  . -.|.|||+.+.   .|+|+.++...-..+-.+     -+. +++.+        
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~---~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~--------   70 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN---FGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQ--------   70 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc---cCCCccCCCCCchhhhccccccccccCCCCch--------
Confidence            6999999999999999999884  1 23999998875   456666655332111111     111 11000        


Q ss_pred             EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHh-------hCCCC-eEEeCceEEEEEEe--CCeEEEEEcC
Q 015331           76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER-------ELPSG-TIRYSSKVVSVEES--GLFKLVNLAD  145 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~-------~~~~~-~i~~~~~v~~v~~~--~~~~~v~~~~  145 (409)
                      .|+.|-.... .....+....  .....+..|..|-++|.+       +.+.. -.+...+++++...  ...+.+...+
T Consensus        71 ~F~~WL~~~~-~~~~d~~~~~--~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~  147 (474)
T COG4529          71 DFVRWLQKQL-QRYRDPEDIN--HDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD  147 (474)
T ss_pred             HHHHHHHhcc-cccCChhhcC--CccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCC
Confidence            0111101000 0000000000  001113344444444433       22222 33456677777766  6678899999


Q ss_pred             CCEEecCEEEEcCCCchHhH
Q 015331          146 GAVFKTKVLIGCDGVNSVVA  165 (409)
Q Consensus       146 g~~~~ad~vV~AdG~~s~vr  165 (409)
                      |....||.+|.|+|..-+..
T Consensus       148 g~~~~ad~~Vlatgh~~~~~  167 (474)
T COG4529         148 GPSEIADIIVLATGHSAPPA  167 (474)
T ss_pred             CCeeeeeEEEEeccCCCCCc
Confidence            99999999999999655443

>PLN02546 glutathione reductase

Probab=98.36  E-value=1.5e-06  Score=85.79  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|||+||||||+|..+|..++++|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.35  E-value=3e-06  Score=84.99  Aligned_cols=33  Identities=18%  Similarity=0.545  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|..+|..+++.|.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999975

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.34  E-value=6.6e-07  Score=86.61  Aligned_cols=38  Identities=32%  Similarity=0.705  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ++.+|||||||+|||+||..|.+.|++|+|+|.++.++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            35799999999999999999999999999999998653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.32  E-value=7.1e-06  Score=78.36  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                . +                    .  
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-~--------------------~--  185 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N-A--------------------P--  185 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-c--------------------C--
Confidence            57999999999999999999999999999987632100                0 0                    0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                     .    .....+.+.+.+.  +++++++++|..++. ++.+.+.+.+|+++.+|+||.|.|....
T Consensus       186 ---------------~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        186 ---------------P----PVQRYLLQRHQQA--GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             ---------------H----HHHHHHHHHHHHC--CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence                           0    0011233334333  789999999999976 5567788889999999999999998764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.32  E-value=3.8e-06  Score=78.63  Aligned_cols=149  Identities=21%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC------CcceeEEechh-HH--HHHHHc----CCch---------
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR------VTGFAITLWTN-AW--RALDAV----GISD---------   63 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~------~~~~~~~~~~~-~~--~~l~~~----gl~~---------   63 (409)
                      ||+|||+|+|||++|+.|++. ++|+|+-|.+...      ..|.+..+.+. +.  ...+.+    |+-+         
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 8999999887432      12223333321 11  111111    1111         


Q ss_pred             -------HHHhhcccccCeEEEeccCCcccccccccccCCCCCcccc---ccCHHHHHHHHHhhC---CCCeEEeCceEE
Q 015331           64 -------SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR---SVKRSLLMEALEREL---PSGTIRYSSKVV  130 (409)
Q Consensus        64 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~r~~l~~~l~~~~---~~~~i~~~~~v~  130 (409)
                             .+...+.+++.     ..++    .+.+...+........   --.-+.+...|.+++   ++++++.++.+.
T Consensus        88 ~~~~ai~~Li~~Gv~FDr-----~~~g----~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~  158 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDR-----DEDG----RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEAL  158 (518)
T ss_pred             hHHHHHHHHHHcCCCCcC-----CCCC----ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence                   11122222211     1111    1111111111000000   011245667777665   578999999999


Q ss_pred             EEEEeCC-eE-EEEEcC--C--CEEecCEEEEcCCCchHh
Q 015331          131 SVEESGL-FK-LVNLAD--G--AVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       131 ~v~~~~~-~~-~v~~~~--g--~~~~ad~vV~AdG~~s~v  164 (409)
                      ++..+++ .+ -|.+.+  +  .++.++.||.|+|.-+.+
T Consensus       159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence            9877776 33 344332  2  468899999999998765

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=1.2e-06  Score=81.04  Aligned_cols=148  Identities=22%  Similarity=0.259  Sum_probs=81.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHH-HHHHHcCCchHHHhhcccccCeEEEec
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAW-RALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ..+||||||||-||+-+|.+.++.|-+.+++-.+-+ ++..+|.-.+..-+. .++++.+..+-+........++.+.. 
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~-  105 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV-  105 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH-
Confidence            468999999999999999999999999998876542 333333222111111 11233322222222211111222111 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEE-EEeC-C----eEEEEEcCCCEEec
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSV-EESG-L----FKLVNLADGAVFKT  151 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v-~~~~-~----~~~v~~~~g~~~~a  151 (409)
                              ++...-+..++ ....++|+.+.+.+.+.+   ++.+|+.+ .|.++ ..++ +    ...|.+.+|..+.+
T Consensus       106 --------LNrs~GPAVwg-~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a  175 (679)
T KOG2311|consen  106 --------LNRSKGPAVWG-LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYA  175 (679)
T ss_pred             --------hhccCCCcccC-hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEecc
Confidence                    11111111111 122577777777777665   34566665 44443 2222 2    23477889999999


Q ss_pred             CEEEEcCCCc
Q 015331          152 KVLIGCDGVN  161 (409)
Q Consensus       152 d~vV~AdG~~  161 (409)
                      +.||..+|.+
T Consensus       176 ~~VilTTGTF  185 (679)
T KOG2311|consen  176 ESVILTTGTF  185 (679)
T ss_pred             ceEEEeeccc
Confidence            9999999975

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.31  E-value=2.8e-06  Score=76.55  Aligned_cols=39  Identities=26%  Similarity=0.549  Sum_probs=35.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      .++||+|||+||.|-.+|+..++.|++...+|++...+.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG   76 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG   76 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc
Confidence            368999999999999999999999999999999886543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.30  E-value=3e-06  Score=81.64  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|||||||.||+.+|..|.+.+.+|+|||+++.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            356999999999999999999877889999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.30  E-value=6.4e-06  Score=78.15  Aligned_cols=107  Identities=15%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|||||||+||+.+|..|++.  ..+|+||++++........               +...+               ..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~---------------~~   52 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF---------------SQ   52 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH---------------hC
Confidence            4999999999999999999885  4689999988743211100               00000               00


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +....             .  .+ +... +.+.++. +++++.+++|+.++.+..  .|.+ ++.++.+|.||.|+|...
T Consensus        53 ~~~~~-------------~--~~-~~~~-~~~~~~~-gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         53 GQRAD-------------D--LT-RQSA-GEFAEQF-NLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             CCCHH-------------H--hh-cCCH-HHHHHhC-CCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence            00000             0  00 0001 1222222 688999999999987654  3443 566799999999999865

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.30  E-value=7.2e-06  Score=86.12  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            57999999999999999999999999999999874

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.28  E-value=9.3e-06  Score=71.59  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .|||||+|+|||+++..+-..|-.|+++|+.....
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G   45 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG   45 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence            69999999999999999998877799999987653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.28  E-value=5.6e-06  Score=85.70  Aligned_cols=110  Identities=17%  Similarity=0.217  Sum_probs=71.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMV   76 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~   76 (409)
                      |+ +.+|||||||+||+.+|..|.++    +++|+||++.+.+......               +...+           
T Consensus         1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~---------------L~~~~-----------   53 (847)
T PRK14989          1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVH---------------LSSYF-----------   53 (847)
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCc---------------chHhH-----------
Confidence            54 45999999999999999999764    5799999988864322111               10000           


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~  156 (409)
                           .+.....+              .+..   .+.+.+  .+++++.+++|..++.+.  ..|.+.+|.++.+|.||.
T Consensus        54 -----~~~~~~~l--------------~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVI  107 (847)
T PRK14989         54 -----SHHTAEEL--------------SLVR---EGFYEK--HGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIM  107 (847)
T ss_pred             -----cCCCHHHc--------------cCCC---HHHHHh--CCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEE
Confidence                 00000000              0111   122222  278999999999987754  356677888899999999


Q ss_pred             cCCCchH
Q 015331          157 CDGVNSV  163 (409)
Q Consensus       157 AdG~~s~  163 (409)
                      |+|....
T Consensus       108 ATGs~p~  114 (847)
T PRK14989        108 ATGSYPW  114 (847)
T ss_pred             CCCCCcC
Confidence            9998654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.28  E-value=3.4e-06  Score=82.44  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.27  E-value=1.5e-05  Score=76.21  Aligned_cols=100  Identities=25%  Similarity=0.329  Sum_probs=77.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +..++|||||+.|+-.|..+++.|.+|+|+|+.+.+-+.                  ..+++                  
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~ei------------------  216 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDPEI------------------  216 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCHHH------------------
Confidence            457999999999999999999999999999988753221                  00110                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC--EEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA--VFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~  161 (409)
                                             .+.+.+.|.+  .++.++.++++..++..++.+.+.++++.  ++++|.|+.|.|+.
T Consensus       217 -----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         217 -----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             -----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence                                   1234444544  36899999999999998877888888876  68999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      ..+
T Consensus       272 Pn~  274 (454)
T COG1249         272 PNT  274 (454)
T ss_pred             cCC
Confidence            654

>PRK06116 glutathione reductase; Validated

Probab=98.27  E-value=1.3e-05  Score=77.96  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=74.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                  ...+                    
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~--------------------  209 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FDPD--------------------  209 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cCHH--------------------
Confidence            58999999999999999999999999999977632100                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                          + +..+.+.|.+.  +++++++++|.+++.+++. +.+.+.+|+++.+|.||.|.|....
T Consensus       210 --------------------~-~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        210 --------------------I-RETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             --------------------H-HHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence                                0 12344444443  7899999999999876554 7788888889999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      +
T Consensus       267 ~  267 (450)
T PRK06116        267 T  267 (450)
T ss_pred             C
Confidence            4

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.27  E-value=1.8e-06  Score=89.13  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|+||||||||+++|..|+++|++|+|||+.+.
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            46999999999999999999999999999998654

>PRK07846 mycothione reductase; Reviewed

Probab=98.26  E-value=1.5e-05  Score=77.30  Aligned_cols=99  Identities=26%  Similarity=0.365  Sum_probs=74.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +..+                   
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~-------------------  208 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDD-------------------  208 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH-------------------
Confidence            358999999999999999999999999999986532100                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + +..+.+ +.+  .+++++.+++|.+++.+++.+.+.+.+++++.+|.||.|.|..+.
T Consensus       209 ---------------------~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        209 ---------------------I-SERFTE-LAS--KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             ---------------------H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence                                 0 111222 222  257899999999998877777888888889999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       264 ~  264 (451)
T PRK07846        264 G  264 (451)
T ss_pred             c
Confidence            4

>PRK07846 mycothione reductase; Reviewed

Probab=98.24  E-value=2.3e-06  Score=83.00  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=27.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||++||||||+|..+|..  +.|.+|+|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988865  4699999999864

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.22  E-value=7.1e-06  Score=80.72  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ..++||+|||||.|||.+|+.++++|.+|+|+||....+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            467899999999999999999999999999999987654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=1.6e-06  Score=81.92  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      ++|+|+|||+|||+||+.|+.+|++|+|+|+++.++.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            4799999999999999999999999999999987643

>TIGR03452 mycothione_red mycothione reductase

Probab=98.21  E-value=3.6e-06  Score=81.71  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+|||+||+|..+|.  +++|.+|+|+|+..
T Consensus         1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            3699999999999988864  45799999999854

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.20  E-value=8.2e-06  Score=77.08  Aligned_cols=105  Identities=16%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            6 DIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +|||||||+||+.+|..|+++   +.+|+|||+++.......           +..      +..              +
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-----------~~~------~~~--------------g   49 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-----------LPG------MIA--------------G   49 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-----------hhH------HHh--------------e
Confidence            489999999999999999643   689999998765221110           000      000              0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      ......+              ...   +.+.+.+.  +++++.+ +|+.++.++.  +|.+.+|+++.+|+||.|+|...
T Consensus        50 ~~~~~~~--------------~~~---~~~~~~~~--gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        50 HYSLDEI--------------RID---LRRLARQA--GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             eCCHHHh--------------ccc---HHHHHHhc--CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence            0000000              111   11222221  6777765 7888887765  56777888899999999999865


Q ss_pred             H
Q 015331          163 V  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       108 ~  108 (364)
T TIGR03169       108 P  108 (364)
T ss_pred             C
Confidence            4

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.19  E-value=1.6e-05  Score=77.58  Aligned_cols=99  Identities=23%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.+...                  ...+                    
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  219 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------EDAD--------------------  219 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------CCHH--------------------
Confidence            47999999999999999999999999999976642110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                           .+..+.+.|.+.  +++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|.....
T Consensus       220 ---------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        220 ---------------------AAEVLEEVFARR--GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             ---------------------HHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence                                 012234444443  789999999999987777788888888899999999999987654

>PLN02507 glutathione reductase

Probab=98.19  E-value=2.7e-05  Score=76.43  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-..                  +..+                    
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~--------------------  245 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE--------------------  245 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH--------------------
Confidence            48999999999999999999999999999976531100                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + +..+.+.|.+.  +++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus       246 --------------------~-~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        246 --------------------M-RAVVARNLEGR--GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence                                0 12244444443  789999999999988777788888888889999999999987654

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.19  E-value=4.1e-05  Score=66.94  Aligned_cols=37  Identities=27%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-------CceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG-------IRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g-------~~V~v~E~~~~~   39 (409)
                      +..+|+|||+|..||++|+.+.+.+       .+|+|++-+..+
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            3579999999999999998888743       579999766654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.18  E-value=2.8e-05  Score=75.53  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=74.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+++.+.+...                  +.++                    
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~--------------------  208 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD--------------------  208 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH--------------------
Confidence            47999999999999999999999999999976532000                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + +..+.+.|.+.  +++++.+++|..++..++.+.+.+.+++++.+|.||.|.|.....
T Consensus       209 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       209 --------------------M-RALLARNMEGR--GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                                0 11233444433  789999999999987767777888888889999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.16  E-value=3.1e-05  Score=75.18  Aligned_cols=99  Identities=24%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +.++                    
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d~~--------------------  208 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FDSM--------------------  208 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cCHH--------------------
Confidence            58999999999999999999999999999987642110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC-CEEecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG-AVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g-~~~~ad~vV~AdG~~s  162 (409)
                                          + +..+.+.|.+.  +++++.++.|..++.+++ .+.+.+.++ ..+.+|.||.|.|...
T Consensus       209 --------------------~-~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       209 --------------------I-SETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             --------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence                                0 12344445443  789999999999987644 367777777 5799999999999876


Q ss_pred             Hh
Q 015331          163 VV  164 (409)
Q Consensus       163 ~v  164 (409)
                      ..
T Consensus       266 n~  267 (450)
T TIGR01421       266 NT  267 (450)
T ss_pred             Cc
Confidence            54

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.15  E-value=2.7e-06  Score=83.68  Aligned_cols=35  Identities=40%  Similarity=0.637  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999999999999999999865

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.15  E-value=4.3e-05  Score=74.05  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=72.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                  ..++                   
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------  199 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------EEPS-------------------  199 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------CCHH-------------------
Confidence            358999999999999999999999999999987642100                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + +..+.+.|.+.  +++++.+++|+.++.+++.+.+.. ++.++.+|.||.|.|....
T Consensus       200 ---------------------~-~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        200 ---------------------V-AALAKQYMEED--GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             ---------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence                                 0 11233444433  789999999999987766666654 4668999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       255 ~  255 (438)
T PRK07251        255 T  255 (438)
T ss_pred             c
Confidence            3

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.14  E-value=3.1e-06  Score=74.81  Aligned_cols=34  Identities=38%  Similarity=0.715  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+|||||+||++||+.|+++|.++.|+-+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            6899999999999999999999999999998765

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.13  E-value=4.3e-05  Score=74.65  Aligned_cols=99  Identities=21%  Similarity=0.310  Sum_probs=72.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  ...+                    
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~~--------------------  214 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------EDAE--------------------  214 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------cCHH--------------------
Confidence            58999999999999999999999999999976532110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc--CCC--EEecCEEEEcCCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA--DGA--VFKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~--~g~--~~~ad~vV~AdG~  160 (409)
                                          + +..+.+.|.+.  +++++.+++|+.++.+++.+.+.+.  +|+  ++.+|.||.|.|.
T Consensus       215 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        215 --------------------V-SKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence                                0 12234444443  7899999999999877766666554  553  6999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+.+
T Consensus       272 ~pn~  275 (466)
T PRK07818        272 APRV  275 (466)
T ss_pred             ccCC
Confidence            7654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.13  E-value=4.6e-05  Score=74.27  Aligned_cols=99  Identities=18%  Similarity=0.267  Sum_probs=71.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                                      .+  
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~--------------------------------------~d--  210 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG--------------------------------------ED--  210 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc--------------------------------------cc--
Confidence            58999999999999999999999999999987632100                                      00  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~s~  163 (409)
                                     ..   + +..+.+.|.+.  +++++.+++|..++.++..+.+...++ .++.+|.||.|+|..+.
T Consensus       211 ---------------~e---~-~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 ---------------ED---I-AHILREKLEND--GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             ---------------HH---H-HHHHHHHHHHC--CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence                           00   0 12344445443  789999999999987766555554322 36899999999998776


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      +
T Consensus       270 ~  270 (458)
T PRK06912        270 V  270 (458)
T ss_pred             C
Confidence            4

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.11  E-value=3.7e-06  Score=78.65  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            69999999999999999999999999999997643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02053 MerA mercuric reductase

Probab=98.09  E-value=4.9e-05  Score=74.23  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=71.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  ..++                    
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  208 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------EEPE--------------------  208 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------cCHH--------------------
Confidence            58999999999999999999999999999987542100                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---CCEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---GAVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~~~~ad~vV~AdG~~  161 (409)
                                          + +..+.+.|.+.  +++++.+++|..++.+++.+.+.+.+   ++++.+|.||.|.|..
T Consensus       209 --------------------~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~  265 (463)
T TIGR02053       209 --------------------I-SAAVEEALAEE--GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR  265 (463)
T ss_pred             --------------------H-HHHHHHHHHHc--CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence                                0 12234444433  78999999999998776666565532   3579999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       266 p~~  268 (463)
T TIGR02053       266 PNT  268 (463)
T ss_pred             cCC
Confidence            654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.09  E-value=5.7e-05  Score=73.38  Aligned_cols=98  Identities=24%  Similarity=0.333  Sum_probs=72.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..                .  +.+++                   
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------------~--~d~~~-------------------  212 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------------H--LDEDI-------------------  212 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------------c--cCHHH-------------------
Confidence            5899999999999999999999999999997653110                0  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                            +..+.+.+ +  .+++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|.....
T Consensus       213 ----------------------~~~l~~~~-~--~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       213 ----------------------SDRFTEIA-K--KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             ----------------------HHHHHHHH-h--cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                                  01122222 2  2578999999999988777778888888889999999999987643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.08  E-value=1.5e-05  Score=82.46  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             EEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            7 IVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      |||||||+||+.+|..|.+.   +++|+|||+.+.+......               +.. +.              .+.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~---------------L~~-~l--------------~g~   50 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRIL---------------LSS-VL--------------QGE   50 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccc---------------ccH-HH--------------CCC
Confidence            68999999999999998775   5799999988764221110               000 00              000


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .....+              .+..   .+.+.+  .+++++.+++|+.++...  ..|.+.+|.++.+|.||.|+|....
T Consensus        51 ~~~~~l--------------~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p~  109 (785)
T TIGR02374        51 ADLDDI--------------TLNS---KDWYEK--HGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYPF  109 (785)
T ss_pred             CCHHHc--------------cCCC---HHHHHH--CCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCcC
Confidence            000000              0111   112222  278999999999998764  3567788888999999999998653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.08  E-value=5.4e-05  Score=74.08  Aligned_cols=99  Identities=19%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                                      .+  
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~--------------------------------------~~--  220 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT--------------------------------------ED--  220 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc--------------------------------------CC--
Confidence            58999999999999999999999999999987642100                                      00  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEE--eCCeEEEEEcCCC--EEecCEEEEcCCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE--SGLFKLVNLADGA--VFKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~--~~~~~~v~~~~g~--~~~ad~vV~AdG~  160 (409)
                                     .   .+ ...+.+.|.+.  +++++.+++|..++.  .+....+.+.+|+  ++.+|.||.|.|.
T Consensus       221 ---------------~---~~-~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~  279 (472)
T PRK05976        221 ---------------A---EL-SKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR  279 (472)
T ss_pred             ---------------H---HH-HHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence                           0   01 12233444433  789999999999975  3333334455663  6899999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      ...+
T Consensus       280 ~p~~  283 (472)
T PRK05976        280 RPNT  283 (472)
T ss_pred             ccCC
Confidence            7654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.07  E-value=4.2e-06  Score=86.94  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            369999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=6.5e-05  Score=73.54  Aligned_cols=99  Identities=20%  Similarity=0.284  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ..++                    
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~--------------------  225 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------ADEQ--------------------  225 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------CCHH--------------------
Confidence            58999999999999999999999999999987632110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~  160 (409)
                                          + +..+.+.|.+  .+++++.+++|+.++.+++.+.+.+.++    .++.+|.||.|.|.
T Consensus       226 --------------------~-~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~  282 (475)
T PRK06327        226 --------------------V-AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR  282 (475)
T ss_pred             --------------------H-HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence                                0 1123334433  2789999999999988777777766543    46899999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       283 ~p~~  286 (475)
T PRK06327        283 VPNT  286 (475)
T ss_pred             ccCC
Confidence            7654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=8e-05  Score=72.68  Aligned_cols=100  Identities=20%  Similarity=0.283  Sum_probs=71.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +                    + 
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------~--------------------d-  214 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------T--------------------D-  214 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------C--------------------C-
Confidence            358999999999999999999999999999976532100                  0                    0 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---C--CCEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---D--GAVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~--g~~~~ad~vV~Ad  158 (409)
                                      ..   + +..+.+.|.+.  +++++.+++|..++.+++.+.+.+.   +  +.++.+|.||.|.
T Consensus       215 ----------------~~---~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~  272 (466)
T PRK06115        215 ----------------TE---T-AKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAI  272 (466)
T ss_pred             ----------------HH---H-HHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEcc
Confidence                            00   0 12234444433  7899999999999876666655543   2  3479999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |..+.+
T Consensus       273 G~~pn~  278 (466)
T PRK06115        273 GRRPYT  278 (466)
T ss_pred             CCcccc
Confidence            987643

>PRK06370 mercuric reductase; Validated

Probab=98.05  E-value=5.9e-05  Score=73.63  Aligned_cols=99  Identities=25%  Similarity=0.329  Sum_probs=71.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~~~~--------------------  213 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------EDED--------------------  213 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------cCHH--------------------
Confidence            58999999999999999999999999999987642100                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE--c-CCCEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL--A-DGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~--~-~g~~~~ad~vV~AdG~~  161 (409)
                                          + +..+.+.|.+.  +++++++++|..++.+++...+.+  . ++.++.+|.||.|.|..
T Consensus       214 --------------------~-~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        214 --------------------V-AAAVREILERE--GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence                                0 12233444432  789999999999988766555544  2 33479999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      ...
T Consensus       271 pn~  273 (463)
T PRK06370        271 PNT  273 (463)
T ss_pred             cCC
Confidence            654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.02  E-value=3.6e-05  Score=71.99  Aligned_cols=109  Identities=19%  Similarity=0.197  Sum_probs=67.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+.+|||||||.+|+.+|..|.++-  .+|+++|+++......           .|-      ++               
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------lL~------ev---------------   49 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------LLY------EV---------------   49 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------hhh------hh---------------
Confidence            3569999999999999999999974  8999999987522110           000      00               


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..+.    ++.         ....+   .+.+.+. ...++++..+ +|++|+.++..  |.++++..+.+|+||.|.|.
T Consensus        50 a~g~----l~~---------~~i~~---p~~~~~~-~~~~v~~~~~-~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs  109 (405)
T COG1252          50 ATGT----LSE---------SEIAI---PLRALLR-KSGNVQFVQG-EVTDIDRDAKK--VTLADLGEISYDYLVVALGS  109 (405)
T ss_pred             hcCC----CCh---------hheec---cHHHHhc-ccCceEEEEE-EEEEEcccCCE--EEeCCCccccccEEEEecCC
Confidence            0000    000         00011   1222222 1123555544 78899887764  55556677999999999998


Q ss_pred             chH
Q 015331          161 NSV  163 (409)
Q Consensus       161 ~s~  163 (409)
                      ...
T Consensus       110 ~~~  112 (405)
T COG1252         110 ETN  112 (405)
T ss_pred             cCC
Confidence            764

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.01  E-value=7.2e-06  Score=79.31  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR--LGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~--~g~~V~v~E~~~~~~   40 (409)
                      ..+|+||||||||+++|..|++  .|++|+|||+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4689999999999999999987  799999999998764

>PRK12831 putative oxidoreductase; Provisional

Probab=98.00  E-value=7.6e-06  Score=79.52  Aligned_cols=36  Identities=25%  Similarity=0.485  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+||||||||+++|+.|+++|++|+|||+.+.+
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            579999999999999999999999999999987653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.00  E-value=5e-05  Score=78.64  Aligned_cols=99  Identities=18%  Similarity=0.377  Sum_probs=73.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-..               .  +.+                     
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--ld~---------------------  182 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--LDQ---------------------  182 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--cCH---------------------
Confidence            47999999999999999999999999999976531100               0  000                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                          .....+.+.|.+.  +++++.++.++.+..++....|.+.+|+++.+|+||.|.|....
T Consensus       183 --------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       183 --------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             --------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence                                0012233444433  78999999999987666556788899999999999999998653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.99  E-value=4.6e-05  Score=73.66  Aligned_cols=97  Identities=22%  Similarity=0.386  Sum_probs=70.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                                  ..   +  
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~---~--  178 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------------------------------LF---D--  178 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------------------------------cc---C--
Confidence            58999999999999999999999999999977632000                                  00   0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                     .   .+ +..+.+.|.+.  +++++++++|.+++.++. + +.+.+|+++.+|.||.|.|....
T Consensus       179 ---------------~---~~-~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       179 ---------------E---EM-NQIVEEELKKH--EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             ---------------H---HH-HHHHHHHHHHc--CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence                           0   00 12233444433  789999999999986543 3 55677888999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.98  E-value=0.00013  Score=70.80  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~--------------------  200 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------EDRD--------------------  200 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------cCHH--------------------
Confidence            48999999999999999999999999999976532110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + ...+.+.|.+.  +++++.+++|.+++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus       201 --------------------~-~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        201 --------------------I-ADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                                0 11234444433  789999999999988777777776655 48999999999987754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.4e-05  Score=71.23  Aligned_cols=109  Identities=28%  Similarity=0.424  Sum_probs=72.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEE-eCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVL-ESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ..|||+||||||||.++|.+.+|+|++.-|+ ||-.       |        +.|+.+++..-             .   
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-------G--------QvldT~~IENf-------------I---  258 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-------G--------QVLDTMGIENF-------------I---  258 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-------C--------eeccccchhhe-------------e---
Confidence            3589999999999999999999999987665 3221       1        11222221100             0   


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe---CCeEEEEEcCCCEEecCEEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES---GLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~---~~~~~v~~~~g~~~~ad~vV~  156 (409)
                            ..+             ...-.+|...|.++..  ++.+....+.+.+++.   ++-..|++.+|-.++++-+|.
T Consensus       259 ------sv~-------------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIl  319 (520)
T COG3634         259 ------SVP-------------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVIL  319 (520)
T ss_pred             ------ccc-------------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEE
Confidence                  000             1112345555555543  4666666777777663   556889999999999999999


Q ss_pred             cCCCc
Q 015331          157 CDGVN  161 (409)
Q Consensus       157 AdG~~  161 (409)
                      ++|+.
T Consensus       320 stGAr  324 (520)
T COG3634         320 ATGAR  324 (520)
T ss_pred             ecCcc
Confidence            99964

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.2e-05  Score=63.49  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=74.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+...+|+|||.|||+-.+|++++++.++-+|||-.-.-. .+.|.                           +....  
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGG---------------------------QLtTT--   54 (322)
T KOG0404|consen    5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGG---------------------------QLTTT--   54 (322)
T ss_pred             ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCc---------------------------eeeee--
Confidence            3455699999999999999999999999999999432100 00000                           00100  


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                      .+     .-+|+..+.       -+.-.+|.+.+++...  +.++ +...|.+++.+..-+++.++.+ .+.||.||.|+
T Consensus        55 T~-----veNfPGFPd-------gi~G~~l~d~mrkqs~r~Gt~i-~tEtVskv~~sskpF~l~td~~-~v~~~avI~at  120 (322)
T KOG0404|consen   55 TD-----VENFPGFPD-------GITGPELMDKMRKQSERFGTEI-ITETVSKVDLSSKPFKLWTDAR-PVTADAVILAT  120 (322)
T ss_pred             ec-----cccCCCCCc-------ccccHHHHHHHHHHHHhhccee-eeeehhhccccCCCeEEEecCC-ceeeeeEEEec
Confidence            00     011221111       3555677788877653  2333 3446777777777777776544 59999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |+..
T Consensus       121 GAsA  124 (322)
T KOG0404|consen  121 GASA  124 (322)
T ss_pred             ccce
Confidence            9764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.97  E-value=0.00012  Score=71.61  Aligned_cols=98  Identities=18%  Similarity=0.246  Sum_probs=71.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +.+                     
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d~---------------------  215 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------ADK---------------------  215 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CCH---------------------
Confidence            58999999999999999999999999999987642100                  000                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~  160 (409)
                                         .+ +..+.+.|.+.   ++++.+++|..++.+++.+.+.+.++    .++.+|.||.|.|.
T Consensus       216 -------------------~~-~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~  272 (471)
T PRK06467        216 -------------------DI-VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR  272 (471)
T ss_pred             -------------------HH-HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence                               00 11233333332   67889999999987777777766542    36999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+.+
T Consensus       273 ~pn~  276 (471)
T PRK06467        273 VPNG  276 (471)
T ss_pred             cccC
Confidence            8765

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.96  E-value=0.00013  Score=71.41  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=71.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||+.|+-+|..++..   |.+|+|+|+.+.+.+.                  +..+                 
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~------------------~d~~-----------------  232 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG------------------FDST-----------------  232 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc------------------cCHH-----------------
Confidence            5799999999999999877654   9999999977642110                  0000                 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                             + +..+.+.|.+.  +++++.++.|..++.+++. ..+.+.+++++.+|.||.|.|.
T Consensus       233 -----------------------~-~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~  286 (486)
T TIGR01423       233 -----------------------L-RKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR  286 (486)
T ss_pred             -----------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence                                   0 12344445443  7899999999999865443 5677777888999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      ....
T Consensus       287 ~Pn~  290 (486)
T TIGR01423       287 VPRT  290 (486)
T ss_pred             CcCc
Confidence            7654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.95  E-value=0.00044  Score=64.45  Aligned_cols=60  Identities=20%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHh
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      .++-..+...|.+.+.  +++++.+++|++++.+++.+. |.+.+| +++||.||.|+|.++.-
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            5677888888887653  689999999999998877654 666666 79999999999998853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.95  E-value=1.5e-05  Score=72.75  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHH--HHHHHcCCchHHHhhcccccCeEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAW--RALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      |++.+|++.||-||+-|++|..|..++ .++..+||.+.++.... ..+....+  .+++.+      -....|.....+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL------VTl~~PTs~ySF   74 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL------VTLVDPTSPYSF   74 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh------ccccCCCCchHH
Confidence            567899999999999999999999875 78999999998765432 11111111  112211      111112111111


Q ss_pred             Ee--ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCC-CeEEeCceEEEEEEeC--CeEE--EEEcCCCEEe
Q 015331           78 AS--SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS-GTIRYSSKVVSVEESG--LFKL--VNLADGAVFK  150 (409)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~~i~~~~~v~~v~~~~--~~~~--v~~~~g~~~~  150 (409)
                      .+  ...++....+         .+....+.|.++.+++.-.+.. -.++|+++|++|...+  ....  +.+.++.+++
T Consensus        75 LNYL~~h~RLy~Fl---------~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~  145 (436)
T COG3486          75 LNYLHEHGRLYEFL---------NYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYR  145 (436)
T ss_pred             HHHHHHcchHhhhh---------hhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEE
Confidence            11  1111111111         2234478999998888765543 4789999999874332  2233  5667777999


Q ss_pred             cCEEEEcCCCchHh
Q 015331          151 TKVLIGCDGVNSVV  164 (409)
Q Consensus       151 ad~vV~AdG~~s~v  164 (409)
                      |+-||++.|....+
T Consensus       146 ar~lVlg~G~~P~I  159 (436)
T COG3486         146 ARNLVLGVGTQPYI  159 (436)
T ss_pred             eeeEEEccCCCcCC
Confidence            99999999987755

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.95  E-value=0.00014  Score=71.57  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++... ...                  +..+                    
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~------------------~d~~--------------------  223 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG------------------FDRQ--------------------  223 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc------------------CCHH--------------------
Confidence            4899999999999999999999999999985321 000                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + ...+.+.|.+.  +++++.++.+..++..++.+.+.+.+|+++.+|.||.|.|..+.+
T Consensus       224 --------------------~-~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        224 --------------------C-SEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             --------------------H-HHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence                                0 12234444433  789999999999987666677888888889999999999987754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.94  E-value=0.00011  Score=71.09  Aligned_cols=94  Identities=16%  Similarity=0.301  Sum_probs=69.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+...                  +.++                    
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~--------------------  190 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD--------------------  190 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH--------------------
Confidence            58999999999999999999999999999987632100                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                          + ...+.+.|.+.  +++++.+++|.+++.  .  .|++.+|+++.+|.||.|.|....
T Consensus       191 --------------------~-~~~l~~~l~~~--gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        191 --------------------M-NQPILDELDKR--EIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             --------------------H-HHHHHHHHHhc--CCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence                                0 12344444443  789999999999863  2  466677888999999999998654

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.93  E-value=0.0013  Score=65.18  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeE-EEEEc---CC--CEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFK-LVNLA---DG--AVFKTKVLIGCDGVNSV-VAKWLGFKK  172 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~-~v~~~---~g--~~~~ad~vV~AdG~~s~-vr~~lg~~~  172 (409)
                      .++...+...+.+.+.  |+++..+++|++++.+++.+ .|++.   +|  .+++|+.||+|+|.++. +.+.+|...
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~  201 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI  201 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC
Confidence            5777777777766553  78999999999999877754 34442   34  26899999999999985 455666543

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.92  E-value=1.5e-05  Score=70.39  Aligned_cols=36  Identities=33%  Similarity=0.543  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +|++|||+|++|+.+|..|++.|.+|+|+||++.++
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            799999999999999999999999999999998764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.91  E-value=1.4e-05  Score=74.42  Aligned_cols=36  Identities=28%  Similarity=0.700  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+++|||||+||+.+|+.|++.|++|.++|+.+.++
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            589999999999999999999999999999999764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.91  E-value=1.2e-05  Score=82.45  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            4699999999999999999999999999999853

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.90  E-value=1.6e-05  Score=75.98  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLAL-HRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L-~~~g~~V~v~E~~~~~~   40 (409)
                      ..+|+||||||||+.+|..| ++.|++|+|||+.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            46899999999999999976 46799999999999764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.90  E-value=0.00016  Score=75.21  Aligned_cols=106  Identities=22%  Similarity=0.329  Sum_probs=75.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-..               .  +.+.                    
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~--ld~~--------------------  188 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------Q--LDQM--------------------  188 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------h--cCHH--------------------
Confidence            47999999999999999999999999999976531000               0  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                          . ...+.+.|.+.  +++++.++.+..+..++  ....+.+.+|+++.+|+||.|.|...
T Consensus       189 --------------------~-~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        189 --------------------G-GEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence                                0 12234444433  78999999999997643  34567888999999999999999876


Q ss_pred             Hh--HhHhCC
Q 015331          163 VV--AKWLGF  170 (409)
Q Consensus       163 ~v--r~~lg~  170 (409)
                      ..  .+..|+
T Consensus       246 n~~L~~~~Gl  255 (847)
T PRK14989        246 QDKLATQCGL  255 (847)
T ss_pred             CchHHhhcCc
Confidence            53  344443

>PRK14694 putative mercuric reductase; Provisional

Probab=97.89  E-value=0.00016  Score=70.72  Aligned_cols=97  Identities=23%  Similarity=0.326  Sum_probs=71.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+++......                   ...+                    
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~~~--------------------  219 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------EDPA--------------------  219 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CCHH--------------------
Confidence            5899999999999999999999999999985321000                   0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + ...+.+.|.+.  +++++.+++|..++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus       220 --------------------~-~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        220 --------------------V-GEAIEAAFRRE--GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence                                0 12244444443  789999999999987777666766554 69999999999987754

>PRK02106 choline dehydrogenase; Validated

Probab=97.88  E-value=1.4e-05  Score=79.78  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~   37 (409)
                      |+..+|+||||||++|+.+|..|++ .|++|+|+|+.+
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            4567899999999999999999999 899999999985

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.87  E-value=2.2e-05  Score=72.01  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=44.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCccCC-----c-ceeEE-------------echhHHHHHHHcCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRS--LVLESSESLRV-----T-GFAIT-------------LWTNAWRALDAVGIS   62 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V--~v~E~~~~~~~-----~-~~~~~-------------~~~~~~~~l~~~gl~   62 (409)
                      .++|+|+|||++||++|++|++++-+|  +|+|+++..+.     . ..++-             .....+..+.++|+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            479999999999999999999998765  55999885321     1 11111             112466778888987


Q ss_pred             hHHHh
Q 015331           63 DSLRQ   67 (409)
Q Consensus        63 ~~~~~   67 (409)
                      +++..
T Consensus        91 ~e~~~   95 (491)
T KOG1276|consen   91 DELQP   95 (491)
T ss_pred             ceeee
Confidence            66543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.86  E-value=1.9e-05  Score=76.63  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            479999999999999999999999999999987654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=97.86  E-value=0.0003  Score=69.77  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+...                  +.++                   
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~-------------------  279 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET-------------------  279 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence            458999999999999999999999999999976531100                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC-CEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG-AVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g-~~~~ad~vV~AdG~~  161 (409)
                                           + ...+.+.|.+.  +++++.++.|..++.+++ .+.+.+.++ +++.+|.||.|.|..
T Consensus       280 ---------------------i-~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        280 ---------------------I-INELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence                                 0 12244444443  789999999999986543 455555444 479999999999976


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      ..+
T Consensus       336 Pn~  338 (561)
T PTZ00058        336 PNT  338 (561)
T ss_pred             CCc
Confidence            543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.86  E-value=0.00023  Score=69.69  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=71.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+-+|..|++.|.+|+|+++. .+.+                  .+.+++                   
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~------------------~~d~~~-------------------  222 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR------------------GFDQDC-------------------  222 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc------------------ccCHHH-------------------
Confidence            47999999999999999999999999999853 1100                  000000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                                            +..+.+.|.+.  +++++.++.+..++..++.+.|++.++   .++.+|.||.|.|..
T Consensus       223 ----------------------~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       223 ----------------------ANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             ----------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence                                  11234445433  789999999999987766666776665   379999999999986


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      ..+
T Consensus       279 pn~  281 (484)
T TIGR01438       279 ACT  281 (484)
T ss_pred             cCC
Confidence            654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.86  E-value=1.3e-05  Score=73.30  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      ||+||||+|++|+.+|..|++.| .+|+|+|+.+.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            69999999999999999999997 69999999874

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.85  E-value=1.8e-05  Score=80.40  Aligned_cols=36  Identities=33%  Similarity=0.548  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            469999999999999999999999999999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.85  E-value=1.8e-05  Score=83.63  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||||||++|..|+++|++|+|||+.+.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            469999999999999999999999999999988754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.84  E-value=0.00014  Score=70.71  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=68.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                                  .+   +  
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------~~---~--  190 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------------------------------SF---D--  190 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------------------------------hc---C--
Confidence            58999999999999999999999999999876531100                                  00   0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                     ..   + ...+.+.|.+.  +++++++++|.+++.+++...+.+. +.++.+|.||.|.|..+.
T Consensus       191 ---------------~~---~-~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        191 ---------------KE---I-TDVMEEELREN--GVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPN  247 (444)
T ss_pred             ---------------HH---H-HHHHHHHHHHC--CCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence                           00   0 11233444333  6899999999999765544445554 447999999999998653

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.84  E-value=3.1e-05  Score=75.77  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      +||+|||+||+|+.+|+.|+++|++|+|||+......
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999987653

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.83  E-value=0.00021  Score=70.05  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.... ..                  +.++                    
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-~~------------------~d~~--------------------  229 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-FR------------------EDPL--------------------  229 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC-Cc------------------chHH--------------------
Confidence            57999999999999999999999999999864210 00                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + ...+.+.|.+.  +++++.+++|..++.+++.+.+.+.++ ++.+|.||.|.|..+.+
T Consensus       230 --------------------~-~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        230 --------------------L-GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence                                0 11233444433  789999999999987777777776665 58999999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=97.82  E-value=0.00028  Score=70.76  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++......                   ...++                  
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~d~~~------------------  312 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------EDPAI------------------  312 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------cCHHH------------------
Confidence            35899999999999999999999999999996421000                   00000                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                             ...+.+.|.+.  +++++.++.|..++.+++.+.+.+.++ ++.+|.||.|.|....
T Consensus       313 -----------------------~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn  366 (561)
T PRK13748        313 -----------------------GEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPN  366 (561)
T ss_pred             -----------------------HHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcC
Confidence                                   11234444433  789999999999987777777776665 5999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       367 ~  367 (561)
T PRK13748        367 T  367 (561)
T ss_pred             C
Confidence            4

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.81  E-value=2.6e-05  Score=76.11  Aligned_cols=36  Identities=31%  Similarity=0.566  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            469999999999999999999999999999998764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.81  E-value=0.00019  Score=68.91  Aligned_cols=99  Identities=28%  Similarity=0.317  Sum_probs=74.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||+|+.|+.+|..|+++|++|+++|+.+.+......                 .                     
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------------~---------------------  178 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------------P---------------------  178 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------------H---------------------
Confidence            58999999999999999999999999999988754321000                 0                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE---EEEcCCCEEecCEEEEcCCCc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL---VNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~---v~~~~g~~~~ad~vV~AdG~~  161 (409)
                                          --...+.+.|.+.  +++++.++.+..++...+...   +...++..+.+|+++.+.|..
T Consensus       179 --------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~  236 (415)
T COG0446         179 --------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER  236 (415)
T ss_pred             --------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence                                0012234444443  588999999999998776544   577788889999999999977


Q ss_pred             hH
Q 015331          162 SV  163 (409)
Q Consensus       162 s~  163 (409)
                      ..
T Consensus       237 p~  238 (415)
T COG0446         237 PN  238 (415)
T ss_pred             cc
Confidence            63

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.80  E-value=2.7e-05  Score=74.11  Aligned_cols=34  Identities=32%  Similarity=0.613  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.77  E-value=3.1e-05  Score=75.46  Aligned_cols=36  Identities=31%  Similarity=0.549  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            469999999999999999999999999999988754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.76  E-value=0.00043  Score=67.59  Aligned_cols=99  Identities=24%  Similarity=0.334  Sum_probs=69.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------  211 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPE-------------------  211 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHH-------------------
Confidence            358999999999999999999999999999987632100                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC--CEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG--AVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g--~~~~ad~vV~AdG~  160 (409)
                                           + ...+.+.|.+.   +++++++++.+++.+++ .++++..++  .++.+|.||.|.|.
T Consensus       212 ---------------------~-~~~~~~~l~~~---I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~  266 (460)
T PRK06292        212 ---------------------V-SKQAQKILSKE---FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR  266 (460)
T ss_pred             ---------------------H-HHHHHHHHhhc---cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence                                 0 11233333332   78999999999987654 455544334  46999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      ...+
T Consensus       267 ~p~~  270 (460)
T PRK06292        267 RPNT  270 (460)
T ss_pred             ccCC
Confidence            7654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.75  E-value=3.6e-05  Score=72.48  Aligned_cols=33  Identities=30%  Similarity=0.674  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            599999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.71  E-value=4.7e-05  Score=77.24  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            368999999999999999999999999999998764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.69  E-value=5.1e-05  Score=73.94  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+|+++|..|+++|++|+|+|+.+.+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            468999999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.69  E-value=0.00053  Score=66.10  Aligned_cols=92  Identities=26%  Similarity=0.334  Sum_probs=65.8

Q ss_pred             cEEEECCCHHHHHHHHHHHH--------------cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccc
Q 015331            6 DIVIVGAGIAGLTTSLALHR--------------LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQ   71 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~--------------~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~   71 (409)
                      +|+|||||++|+-+|..|+.              .+.+|+|+|+.+.+-..                  +          
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------------------~----------  226 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------------------F----------  226 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------------------C----------
Confidence            79999999999999999975              36788888866531100                  0          


Q ss_pred             ccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331           72 LQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT  151 (409)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a  151 (409)
                                +                 .   .+ +..+.+.|.+.  +++++.+++|.++..+    .|.+++|+++.+
T Consensus       227 ----------~-----------------~---~~-~~~~~~~L~~~--gV~v~~~~~v~~v~~~----~v~~~~g~~i~~  269 (424)
T PTZ00318        227 ----------D-----------------Q---AL-RKYGQRRLRRL--GVDIRTKTAVKEVLDK----EVVLKDGEVIPT  269 (424)
T ss_pred             ----------C-----------------H---HH-HHHHHHHHHHC--CCEEEeCCeEEEEeCC----EEEECCCCEEEc
Confidence                      0                 0   01 23345555443  7999999999988643    366788999999


Q ss_pred             CEEEEcCCCch
Q 015331          152 KVLIGCDGVNS  162 (409)
Q Consensus       152 d~vV~AdG~~s  162 (409)
                      |++|.|.|...
T Consensus       270 d~vi~~~G~~~  280 (424)
T PTZ00318        270 GLVVWSTGVGP  280 (424)
T ss_pred             cEEEEccCCCC
Confidence            99999999644

>PLN02546 glutathione reductase

Probab=97.66  E-value=0.00067  Score=67.33  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +.+                    
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------~d~--------------------  293 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------FDE--------------------  293 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------cCH--------------------
Confidence            358999999999999999999999999999976531100                  000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                           --+..+.+.|.+.  +++++.++.+..++.. ++.+.+.+.++....+|.||.|.|...
T Consensus       294 ---------------------~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        294 ---------------------EVRDFVAEQMSLR--GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             ---------------------HHHHHHHHHHHHC--CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence                                 0012233444433  7899999999999764 344566666555455899999999887


Q ss_pred             Hh
Q 015331          163 VV  164 (409)
Q Consensus       163 ~v  164 (409)
                      ..
T Consensus       351 nt  352 (558)
T PLN02546        351 NT  352 (558)
T ss_pred             CC
Confidence            65

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.65  E-value=7.5e-05  Score=70.12  Aligned_cols=37  Identities=30%  Similarity=0.394  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ...+|+|||||++|+.+|..|++.|++|+|+|+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3469999999999999999999999999999988754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.64  E-value=6.3e-05  Score=76.22  Aligned_cols=36  Identities=31%  Similarity=0.536  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            468999999999999999999999999999998864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.62  E-value=0.00081  Score=61.53  Aligned_cols=92  Identities=17%  Similarity=0.337  Sum_probs=64.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.+.+|+++++.+....                                           
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------------------------------------------  178 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA-------------------------------------------  178 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence            5899999999999999999999999999997542100                                           


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~AdG  159 (409)
                                            ...+.+.|.+ ..++++++++++.+++.++....+.+.   ++  .++.+|.||.|.|
T Consensus       179 ----------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  235 (300)
T TIGR01292       179 ----------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG  235 (300)
T ss_pred             ----------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence                                  0012233332 236789999999998865533334332   23  4789999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       236 ~~~  238 (300)
T TIGR01292       236 HEP  238 (300)
T ss_pred             CCC
Confidence            543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.59  E-value=0.00068  Score=67.05  Aligned_cols=92  Identities=21%  Similarity=0.333  Sum_probs=65.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..                                           
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------------------------------------------  389 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------------------------------------------  389 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence            5899999999999999999999999999986542100                                           


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEcC---C--CEEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLAD---G--AVFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~~---g--~~~~ad~vV~Ad  158 (409)
                                            ...+.+.|.+ ..++++++++.+..++.+++.+. |++.+   +  +++.+|.||.|.
T Consensus       390 ----------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~  446 (515)
T TIGR03140       390 ----------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQI  446 (515)
T ss_pred             ----------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEe
Confidence                                  0012223322 23789999999999987655543 55543   2  368999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       447 G~~P  450 (515)
T TIGR03140       447 GLVP  450 (515)
T ss_pred             CCcC
Confidence            9654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.58  E-value=0.00097  Score=67.24  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                    
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~d~e--------------------  354 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------LDAD--------------------  354 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------CCHH--------------------
Confidence            47999999999999999999999999999987642110                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe--EEEEEcC-------C--------C
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF--KLVNLAD-------G--------A  147 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~--~~v~~~~-------g--------~  147 (409)
                                          + ...+.+.+.+ -.+++++.++.|..++..++.  +.+.+.+       +        +
T Consensus       355 --------------------i-s~~l~~~ll~-~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~  412 (659)
T PTZ00153        355 --------------------V-AKYFERVFLK-SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK  412 (659)
T ss_pred             --------------------H-HHHHHHHHhh-cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence                                0 1112232222 126899999999999876533  5554431       1        2


Q ss_pred             EEecCEEEEcCCCchHh
Q 015331          148 VFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       148 ~~~ad~vV~AdG~~s~v  164 (409)
                      ++.+|.||.|.|....+
T Consensus       413 ~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        413 ETYVDSCLVATGRKPNT  429 (659)
T ss_pred             EEEcCEEEEEECcccCC
Confidence            69999999999987654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.57  E-value=0.00049  Score=64.52  Aligned_cols=53  Identities=26%  Similarity=0.325  Sum_probs=40.5

Q ss_pred             HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC-EEecCEEEEcCCCch-HhHhHh
Q 015331          110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA-VFKTKVLIGCDGVNS-VVAKWL  168 (409)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~s-~vr~~l  168 (409)
                      ..+.|.+.  +++++.++.|++++.++    |++++|. .+.++.+|=|.|... ++-+.+
T Consensus       215 a~~~L~~~--GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         215 AERALEKL--GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHC--CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            44455544  89999999999999875    7777777 499999999999854 444443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.54  E-value=7.9e-05  Score=71.46  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            58999999999999999999999999999998865

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.52  E-value=3.1e-05  Score=64.16  Aligned_cols=37  Identities=35%  Similarity=0.546  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~   41 (409)
                      .||+|||+|-+||++||..+++  ..+|.|||.+-.|+.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            5999999999999999999864  689999998876643

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.52  E-value=8.3e-05  Score=73.59  Aligned_cols=37  Identities=41%  Similarity=0.558  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |..++|+||||+|.+|..+|..|+..|.+|+|+|+..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            4568999999999999999999999999999999984

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00013  Score=64.69  Aligned_cols=35  Identities=23%  Similarity=0.490  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|-|||||+||.-+|+.++++|++|.++|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            45799999999999999999999999999997763

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.52  E-value=0.00013  Score=73.08  Aligned_cols=36  Identities=28%  Similarity=0.586  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+|+||||||+||++|+.|++.|++|+|+|+.+.+.
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999987643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.50  E-value=0.00013  Score=71.41  Aligned_cols=35  Identities=31%  Similarity=0.523  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            69999999999999999999999999999988754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.47  E-value=0.00019  Score=63.86  Aligned_cols=36  Identities=36%  Similarity=0.660  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..||+|||+|+|||.+|..|+.+|.+|+|+|+..+.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq   40 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ   40 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence            689999999999999999999999999999987753

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.46  E-value=0.0004  Score=64.55  Aligned_cols=131  Identities=16%  Similarity=0.173  Sum_probs=70.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcce----eEEechhHHHHHHHcCCchHHHhhcccccCeEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGF----AITLWTNAWRALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ...|+|||||.++.-++..|.+.+.  +|+++=|++.......    ...+.|...+.+..+  .++..........   
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l--~~~~R~~~l~~~~---  264 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL--PDEERRELLREQR---  264 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHHTG---
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC--CHHHHHHHHHHhH---
Confidence            4689999999999999999999875  8999998875432211    112334333333332  2222111110000   


Q ss_pred             EeccCCcccccccccccCCCCCccccccCHHHH---HHHHHh-hC---CCCeEEeCceEEEEEEeCC-eEEEEEcCC---
Q 015331           78 ASSVSCQPASEISFKTKGNRGGHEVRSVKRSLL---MEALER-EL---PSGTIRYSSKVVSVEESGL-FKLVNLADG---  146 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~l~~-~~---~~~~i~~~~~v~~v~~~~~-~~~v~~~~g---  146 (409)
                                ..+.         .  .|+...+   .+.+++ ++   ....++.+++|++++..++ ++.+++.+.   
T Consensus       265 ----------~~ny---------~--~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~  323 (341)
T PF13434_consen  265 ----------HTNY---------G--GIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTG  323 (341)
T ss_dssp             ----------GGTS---------S--EB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT-
T ss_pred             ----------hhcC---------C--CCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCC
Confidence                      0000         0  2333222   222221 11   1368889999999999884 888888762   


Q ss_pred             --CEEecCEEEEcCCC
Q 015331          147 --AVFKTKVLIGCDGV  160 (409)
Q Consensus       147 --~~~~ad~vV~AdG~  160 (409)
                        .++.+|.||.|+|.
T Consensus       324 ~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  324 EEETLEVDAVILATGY  339 (341)
T ss_dssp             -EEEEEESEEEE---E
T ss_pred             CeEEEecCEEEEcCCc
Confidence              36899999999995

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.38  E-value=0.00023  Score=64.53  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      ...|+|||+||||..+|..|.++  +.+|.|+|+.+.|
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            45899999999999999999884  6899999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=97.37  E-value=0.0015  Score=60.53  Aligned_cols=33  Identities=12%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            589999999999999999999999999999765

>PRK13984 putative oxidoreductase; Provisional

Probab=97.35  E-value=0.00026  Score=71.59  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||+||+|+++|..|+++|++|+|||+.+.+
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999988754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.25  E-value=0.0028  Score=62.81  Aligned_cols=92  Identities=20%  Similarity=0.297  Sum_probs=65.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||.+|+-+|..|+..+.+|+|+++.+....                                        .  
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~----------------------------------------~--  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA----------------------------------------D--  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc----------------------------------------c--
Confidence            4899999999999999999999999999986653100                                        0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEc---CCC--EEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLA---DGA--VFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.+. ...++++++++.+.+++.+++.++ +++.   +++  ++.+|.|+.|.
T Consensus       390 -----------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~  445 (517)
T PRK15317        390 -----------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQI  445 (517)
T ss_pred             -----------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeE
Confidence                                   00112222 224789999999999987755443 4443   232  58899999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       446 G~~p  449 (517)
T PRK15317        446 GLVP  449 (517)
T ss_pred             CCcc
Confidence            9653

>PLN02785 Protein HOTHEAD

Probab=97.24  E-value=0.00036  Score=69.64  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+||||||.+|+.+|..|++ +.+|+|+|+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35899999999999999999999 689999999864

>TIGR01810 betA choline dehydrogenase

Probab=97.23  E-value=0.00027  Score=70.26  Aligned_cols=32  Identities=34%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      |+||||||.+|+.+|..|++.| ++|+|+|+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            8999999999999999999998 6999999986

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.17  E-value=0.0035  Score=58.92  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      ..|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99998654

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=97.16  E-value=0.01  Score=57.06  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEE-cCCCEEecCEEEEcCCCch
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNL-ADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~-~~g~~~~ad~vV~AdG~~s  162 (409)
                      +++|+++++|++|+.+++++++.. .+|+++.||.||.|.....
T Consensus       211 g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       211 GGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH  254 (419)
T ss_pred             CCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence            679999999999999888766544 3677899999999876544

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.15  E-value=0.0027  Score=59.45  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331          106 KRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVNS-----------VVAKWLGFK  171 (409)
Q Consensus       106 ~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~s-----------~vr~~lg~~  171 (409)
                      .-+.+.+.|.+.+  .+++++++++|.++  +++++.|.+.++ ..++||.||.|+|..|           .+.+.+|..
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~  161 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS  161 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence            4466777777665  37999999999999  334577777543 4699999999999976           456777765


Q ss_pred             C
Q 015331          172 K  172 (409)
Q Consensus       172 ~  172 (409)
                      .
T Consensus       162 i  162 (376)
T TIGR03862       162 V  162 (376)
T ss_pred             c
Confidence            4

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.10  E-value=0.0069  Score=57.17  Aligned_cols=47  Identities=17%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +.+.|.+.  +++++.++++..++.+    .|.+.+|.++.+|.||.|.|...
T Consensus       197 ~~~~l~~~--gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       197 VLRLLARR--GIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHC--CCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence            44444443  7899999999988533    46777888999999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.09  E-value=0.00051  Score=70.26  Aligned_cols=36  Identities=31%  Similarity=0.509  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+|+|||.|||||++|-.|-+.|+.|+|+||.+.++
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence            589999999999999999999999999999998653

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.04  E-value=0.00057  Score=60.57  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-C-CceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL-G-IRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~-g-~~V~v~E~~~~   38 (409)
                      ++++|+|||||-+|+..|..+.++ | -+|.|+|....
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            468999999999999999999875 3 37999996654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.00  E-value=0.0099  Score=57.78  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.0016  Score=56.64  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=45.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-------CcceeEEechhHHHHHHHcCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-------VTGFAITLWTNAWRALDAVGIS   62 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-------~~~~~~~~~~~~~~~l~~~gl~   62 (409)
                      ++++|||+|..|.++|..|.+.|++|+++|+++...       .....+.........|+++|+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            479999999999999999999999999999987531       2223444555667888888765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.93  E-value=0.0059  Score=57.43  Aligned_cols=39  Identities=21%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ++++++++.|+.++....  +|.+.+|+++.++.+|.|+|.
T Consensus       141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence            689999999999987654  678889999999999999998

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.90  E-value=0.011  Score=57.80  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999998 899998754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.89  E-value=0.018  Score=54.91  Aligned_cols=36  Identities=33%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~   39 (409)
                      +.++=|||+|+|+|++|.+|-|-    |-+|+|+|+.+.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            45788999999999999999884    6799999988753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.88  E-value=0.0068  Score=55.34  Aligned_cols=99  Identities=19%  Similarity=0.321  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+.+|||||..||-.+..-.+.|-+|+++|-.+.....                  +                    ++
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~------------------m--------------------D~  252 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV------------------M--------------------DG  252 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc------------------c--------------------CH
Confidence            357899999999999999999999999999955432110                  0                    10


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcC---C--CEEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLAD---G--AVFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~---g--~~~~ad~vV~A  157 (409)
                      +                    + .+.+.+.|.+  ++..++.+++|+..+.+++ .+.|.+.+   +  ++++||++.+|
T Consensus       253 E--------------------i-sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs  309 (506)
T KOG1335|consen  253 E--------------------I-SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS  309 (506)
T ss_pred             H--------------------H-HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence            0                    0 1234445544  3789999999999998877 56666544   2  37899999999


Q ss_pred             CCCchH
Q 015331          158 DGVNSV  163 (409)
Q Consensus       158 dG~~s~  163 (409)
                      .|+..-
T Consensus       310 iGRrP~  315 (506)
T KOG1335|consen  310 IGRRPF  315 (506)
T ss_pred             ccCccc
Confidence            997643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.84  E-value=0.0077  Score=64.29  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+|+|||+|+.|+.+|..|++.|. .|+|+|..+...                .                          
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~----------------~--------------------------  355 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS----------------P--------------------------  355 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh----------------H--------------------------
Confidence            589999999999999999999995 578998654210                0                          


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc----CCCEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA----DGAVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~----~g~~~~ad~vV~AdG  159 (409)
                                               .+.+.|.+.  ++.++.++.|+.+..++....|++.    +++++.||.|+.+.|
T Consensus       356 -------------------------~l~~~L~~~--GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G  408 (985)
T TIGR01372       356 -------------------------EARAEAREL--GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG  408 (985)
T ss_pred             -------------------------HHHHHHHHc--CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC
Confidence                                     012233322  6888889888888765433233333    445799999999999


Q ss_pred             CchHh--HhHhC
Q 015331          160 VNSVV--AKWLG  169 (409)
Q Consensus       160 ~~s~v--r~~lg  169 (409)
                      ....+  .+.++
T Consensus       409 ~~Pnt~L~~~lg  420 (985)
T TIGR01372       409 WTPVVHLFSQRG  420 (985)
T ss_pred             cCchhHHHHhcC
Confidence            87643  44444

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.80  E-value=0.0074  Score=56.78  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ...|+++|+|..|+-+|..|.-.+.+|+++++.+.+-..                                  .+   . 
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~----------------------------------lf---~-  254 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR----------------------------------LF---G-  254 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh----------------------------------hh---h-
Confidence            346999999999999999999999999999977642110                                  00   0 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                                          .--++.+..++.+.  +++++.++.+.+++.+.  ....|.+.+++++.||+||.+.|..
T Consensus       255 --------------------~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~  312 (478)
T KOG1336|consen  255 --------------------PSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK  312 (478)
T ss_pred             --------------------HHHHHHHHHHHHhc--CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence                                00133455555554  68999999999998765  4466899999999999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +.+
T Consensus       313 p~t  315 (478)
T KOG1336|consen  313 PNT  315 (478)
T ss_pred             ccc
Confidence            643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.72  E-value=0.0034  Score=60.93  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|.+|+=.|..|++.+.+|+++.|..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            3589999999999999999999999999998764

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.71  E-value=0.0013  Score=61.10  Aligned_cols=49  Identities=22%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331          120 SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      +.+|.++..|.+|.-++++ +.|.+.||+++.++.||-=.+.+-..-+.+
T Consensus       278 GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  278 GAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             cceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            6799999999999877665 559999999999999887666665554444

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.69  E-value=0.0022  Score=52.56  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||||..|.++|..|+++|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0024  Score=57.20  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      -+||.+|||||-+||+||...+..|.+|.++|-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            368999999999999999999999999999984

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.60  E-value=0.0027  Score=60.44  Aligned_cols=41  Identities=27%  Similarity=0.483  Sum_probs=31.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      |..++||||+|-|+.-+.+|..|++.|.+|+.+|+++.-+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence            77889999999999999999999999999999999985433

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.59  E-value=0.022  Score=57.02  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            589999999999999999999999999999765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.59  E-value=0.002  Score=54.28  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|||.|..||.+|..|+++|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            4799999999999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12831 putative oxidoreductase; Provisional

Probab=96.59  E-value=0.034  Score=54.27  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999998654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.58  E-value=0.027  Score=55.12  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESS   36 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~   36 (409)
                      .+|+|||||..|+-+|..+.+.|. +|++++..
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            479999999999999999888886 68866644

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.53  E-value=0.013  Score=54.13  Aligned_cols=51  Identities=25%  Similarity=0.324  Sum_probs=42.0

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc--hHhHhHhCC
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN--SVVAKWLGF  170 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~--s~vr~~lg~  170 (409)
                      ++.++.|..|.++......+.++++||.+++.|+||+|.|-.  |-+.+.-|.
T Consensus       407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL  459 (659)
T KOG1346|consen  407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL  459 (659)
T ss_pred             CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc
Confidence            789999999999888877889999999999999999999974  444444333

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.42  E-value=0.0039  Score=52.29  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..++++|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999998764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.41  E-value=0.0035  Score=61.32  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      ..||.||||||-||+.+|..|++. .++|+|+|+...+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999985 7899999998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.28  E-value=0.006  Score=55.67  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            56667899999999999999999999999999998764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.28  E-value=0.0083  Score=59.24  Aligned_cols=35  Identities=17%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|.=.|..|++...+|.+.-|+..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            46899999999999999999999889999888764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.21  E-value=0.0066  Score=59.64  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|++|+.+|..|+++|.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999765

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.21  E-value=0.039  Score=49.94  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      +.+|..|||||-.|++.|+..+.+|.+|.|+|..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            4689999999999999999999999999999965

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.21  E-value=0.0068  Score=55.00  Aligned_cols=38  Identities=32%  Similarity=0.519  Sum_probs=33.8

Q ss_pred             CCCC-CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEED-EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~-~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.+ .+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            5544 3799999999999999999999999999998875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.0057  Score=59.71  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|+|||.|++|+++|..|+++|++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.06  E-value=0.09  Score=53.69  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999986 599998765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.03  E-value=0.011  Score=47.96  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+|+|+|-.|+..|..|++.|.+|.++.|.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.98  E-value=0.01  Score=54.43  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|+|||+|..|...|..|++.|.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            4689999999999999999999999999999864

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.96  E-value=0.01  Score=55.10  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++.++|.|||+|.-|...|..|++.|++|++++|++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            67778999999999999999999999999999998653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.0091  Score=54.90  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            3799999999999999999999999999998864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.91  E-value=0.012  Score=54.22  Aligned_cols=35  Identities=31%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++++|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            45789999999999999999999999999998764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.82  E-value=0.089  Score=54.77  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4899999999999999999999987 99998764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.76  E-value=0.015  Score=53.29  Aligned_cols=34  Identities=12%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..++.+|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.016  Score=56.48  Aligned_cols=35  Identities=29%  Similarity=0.662  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +..+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35689999999999999999999999999999875

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.70  E-value=0.016  Score=53.36  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.+-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            66656899999999999999999999999999997653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.68  E-value=0.015  Score=56.88  Aligned_cols=36  Identities=28%  Similarity=0.554  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            358999999999999999999999999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.65  E-value=1.1  Score=44.34  Aligned_cols=55  Identities=18%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             HHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcCC-----CEEecCEEEEcCCCch
Q 015331          108 SLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLADG-----AVFKTKVLIGCDGVNS  162 (409)
Q Consensus       108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~g-----~~~~ad~vV~AdG~~s  162 (409)
                      ..|.+.|.+.+  .+++|+++++|++|..+++.+ .|.+.++     +++.+|.||.+.....
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~  294 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS  294 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence            45666676655  378999999999998877642 2434343     5789999998877643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.62  E-value=0.017  Score=52.72  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=34.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.+-.+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            66556899999999999999999999999999998764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.62  E-value=0.03  Score=55.72  Aligned_cols=107  Identities=21%  Similarity=0.330  Sum_probs=69.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      ...+|||||.-|+-+|..|.+.|.+|+|++-.+..-                     ..++...             .+ 
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------------erQLD~~-------------ag-  190 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------------ERQLDRT-------------AG-  190 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------------HHhhhhH-------------HH-
Confidence            346999999999999999999999999998554210                     0000000             00 


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-  163 (409)
                                             ..|.+.|.+.  +..++.++..+.+..++....++++||..+.+|+||-|+|.... 
T Consensus       191 -----------------------~lL~~~le~~--Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~  245 (793)
T COG1251         191 -----------------------RLLRRKLEDL--GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND  245 (793)
T ss_pred             -----------------------HHHHHHHHhh--cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence                                   0011111111  45666666666665555556789999999999999999998764 


Q ss_pred             -hHhHhCCC
Q 015331          164 -VAKWLGFK  171 (409)
Q Consensus       164 -vr~~lg~~  171 (409)
                       +.+..|+.
T Consensus       246 ela~~aGla  254 (793)
T COG1251         246 ELAKEAGLA  254 (793)
T ss_pred             HhHHhcCcC
Confidence             35555543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.58  E-value=0.023  Score=46.40  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLE   34 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E   34 (409)
                      ..+|+|||||..|..-|..|.+.|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4689999999999999999999999999995

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.54  E-value=0.02  Score=52.12  Aligned_cols=34  Identities=18%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.52  E-value=0.023  Score=47.03  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++.+|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35799999999999999999999999999999765

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.46  E-value=0.02  Score=52.56  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|++.|++|++++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999854

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.44  E-value=0.02  Score=52.58  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|+|||+|..|.++|..|+++|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999997

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.42  E-value=0.085  Score=50.49  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      ++.++.+++|..++....  .|.+.++ .+.+|.+|.|+|.....
T Consensus        67 ~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~  108 (415)
T COG0446          67 GIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPRP  108 (415)
T ss_pred             CCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCcccC
Confidence            678999999999987765  3555566 78999999999987543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.39  E-value=0.028  Score=48.16  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||||.+|..-+..|.+.|.+|+|++...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4589999999999999999999999999998543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.34  E-value=0.03  Score=51.57  Aligned_cols=39  Identities=13%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      |.+..+|+|||+|-.|..+|+.|+..|+ ++.|+|.++..
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            4456799999999999999999999996 89999987753

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.021  Score=52.00  Aligned_cols=33  Identities=21%  Similarity=0.486  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.31  E-value=0.022  Score=54.54  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |. ..+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            54 46899999999999999999999999999998764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.31  E-value=0.015  Score=43.81  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            45689999999999999999999999999998663

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.028  Score=51.01  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            4799999999999999999999999999998764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.18  E-value=0.025  Score=51.60  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.18  E-value=0.028  Score=52.49  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ++|+|||+|..|...|..|+++|++|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            47999999999999999999999999999974

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.16  E-value=0.037  Score=47.32  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      ...|+|||||-.|...|..|.+.|.+|+|+++
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            46899999999999999999999999999974

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.15  E-value=0.031  Score=44.41  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999998 799999765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.13  E-value=0.031  Score=51.27  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      +|.|||+|.+|+++|+.|+.+|  .+|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            6999999999999999999999  47999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.12  E-value=0.028  Score=51.97  Aligned_cols=34  Identities=32%  Similarity=0.559  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|.+||.+|..|++.|++|+.+|.++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998864

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.10  E-value=0.037  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5689999999999999999999999 699999773

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.09  E-value=0.027  Score=44.68  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|+|+.+.+++..++..|++|+|+|.+++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998765

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.09  E-value=0.031  Score=54.97  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+.-.+|.|||+|.-|...|..|+++|++|+|+|+++.
T Consensus         1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            55556899999999999999999999999999998764

>PRK04148 hypothetical protein; Provisional

Probab=95.03  E-value=0.026  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 999999999999999999998774

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.96  E-value=0.039  Score=42.42  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|+|.|..|..++..|.+.+++|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.94  E-value=0.042  Score=50.51  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.++|.|||+|..|.+.|..|++.|++|.+++|+..
T Consensus         2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3567899999999999999999999999999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.93  E-value=0.38  Score=47.05  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||||..|+-+|..+.+.|. +|+|+++.+.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            589999999999999999999995 7999997653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.88  E-value=0.055  Score=43.33  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=30.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|+|||+ |..|.++|+.|...++  ++.|+|....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            47999999 9999999999999875  6999998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.86  E-value=0.3  Score=51.64  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc-C-CceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL-G-IRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~-g-~~V~v~E~~~   37 (409)
                      .+|+|||||.+|+-+|..+.+. | .+|+|+.+++
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            4899999999999999998887 5 4899999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.84  E-value=0.04  Score=51.89  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|.+|+.+|..|+..|.+|+++|+++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.83  E-value=0.05  Score=48.46  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            35689999999999999999999995 899999665

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.79  E-value=0.049  Score=49.85  Aligned_cols=34  Identities=29%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ++|.|||+|..|+.+|+.|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            479999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.74  E-value=0.069  Score=42.43  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      ..+|+|||+|-+|-+++..|+..|.+ |+|+.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            46899999999999999999999987 99999865

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.72  E-value=0.044  Score=50.86  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|-.|.++|..|++.|++|.+++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999865

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.67  E-value=0.039  Score=53.81  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.65  E-value=0.38  Score=51.08  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL-GI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~-g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..+.+. |. +|+|++++.
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            5899999999999999998876 85 799999765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.46  Score=43.41  Aligned_cols=36  Identities=17%  Similarity=0.476  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||-+..--|+.|++.+.+|+++-|++..
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~  178 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF  178 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence            349999999999999999999999999999988753

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.58  E-value=0.04  Score=52.88  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.57  E-value=0.049  Score=51.69  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4899999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.54  E-value=0.43  Score=48.90  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999986 699988764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.46  E-value=0.046  Score=49.49  Aligned_cols=32  Identities=34%  Similarity=0.445  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||.|..|.++|..|+++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999765

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.27  E-value=0.061  Score=49.85  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|..|...|..|++.|++|+++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.23  E-value=0.088  Score=43.44  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999996 6999999999999999999976

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.21  E-value=0.038  Score=47.95  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      +.+|||||+||.+||-.|+++  ..+|+|+-.++..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            368999999999999999986  4578888777643

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.20  E-value=0.075  Score=49.34  Aligned_cols=34  Identities=32%  Similarity=0.540  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 899999875

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.17  E-value=0.065  Score=44.15  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||-|..|...|..|.++|++|.++|+.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            4899999999999999999999999999998864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.16  E-value=0.088  Score=46.47  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+.+++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            346899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.15  E-value=0.31  Score=48.87  Aligned_cols=110  Identities=23%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +.+++|||.|++|..+.-.+.+   .-++|++|-..+.+....  +.+++                          ++..
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls~--------------------------vl~~   54 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLSS--------------------------VLAG   54 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeecc--------------------------ccCC
Confidence            5689999999999999999887   346899986555432210  11100                          0000


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                       . .....+              .+.+.+   + +++ .+++++.+.+|+.++....  .|.++.|.++.+|-+|.|+|.
T Consensus        55 -~-~~~edi--------------~l~~~d---w-y~~-~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS  111 (793)
T COG1251          55 -E-KTAEDI--------------SLNRND---W-YEE-NGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGS  111 (793)
T ss_pred             -C-ccHHHH--------------hccchh---h-HHH-cCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCc
Confidence             0 000000              111111   1 122 1789999999999987654  577788999999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      ...+
T Consensus       112 ~pfi  115 (793)
T COG1251         112 YPFI  115 (793)
T ss_pred             cccc
Confidence            7655

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.12  E-value=0.21  Score=47.57  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=47.1

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCC--CEEecCEEEEcCCCc-hH
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADG--AVFKTKVLIGCDGVN-SV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g--~~~~ad~vV~AdG~~-s~  163 (409)
                      .+.-..|.+.|.+.+.  +++++.+++|.++..++++++ |.+.++  .++++|.+|.|+|.+ |.
T Consensus       259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence            4566677777777653  679999999999998888766 454555  479999999999999 74

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.03  E-value=0.096  Score=44.81  Aligned_cols=35  Identities=23%  Similarity=0.472  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+.+|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            35789999999999999999999998 899999764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.90  E-value=0.38  Score=44.83  Aligned_cols=45  Identities=24%  Similarity=0.173  Sum_probs=35.0

Q ss_pred             CCCeEEeCceEEEEEEeCCe-EEEEEcC-----CCEEecCEEEEcCCCchH
Q 015331          119 PSGTIRYSSKVVSVEESGLF-KLVNLAD-----GAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       119 ~~~~i~~~~~v~~v~~~~~~-~~v~~~~-----g~~~~ad~vV~AdG~~s~  163 (409)
                      +.+.+.-+++|..++..+++ +.+.+..     ..+++.|.||.|+|..-.
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~  341 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRA  341 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccC
Confidence            35688889999999998866 6665533     237899999999998743

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.88  E-value=0.079  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      ++|+|||.|..|+.+|..|+++|  ++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            47999999999999999999984  78999998764

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.11  Score=47.49  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+||+|+|-|+.=+.++..|+..|.+|+.||+++.-+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            4999999999999999999999999999999998543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.82  E-value=0.095  Score=45.53  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVG-AGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.||| +|..|.++|..|++.|++|.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 69999999999999999999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.77  E-value=0.078  Score=50.28  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|+.+|..|+. |++|+++|++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999988885 999999998875

>PRK13984 putative oxidoreductase; Provisional

Probab=93.76  E-value=0.72  Score=46.81  Aligned_cols=36  Identities=19%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             CCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcC
Q 015331          286 KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTE  327 (409)
Q Consensus       286 ~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~  327 (409)
                      .++|+.+||+++.      ..+..|+.++..+|..|.+.+.+
T Consensus       568 ~~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~~  603 (604)
T PRK13984        568 IPWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLRK  603 (604)
T ss_pred             CCCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhcc
Confidence            5789999999853      24677999999999999987753

>PRK05442 malate dehydrogenase; Provisional

Probab=93.75  E-value=0.1  Score=48.14  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCC-------ceEEEeCCC
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGI-------RSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~-------~V~v~E~~~   37 (409)
                      |+.+.+|+|||+ |..|.++|+.|...|+       ++.|+|..+
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~   45 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP   45 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence            888899999998 9999999999988764       699999764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.75  E-value=0.11  Score=48.34  Aligned_cols=34  Identities=24%  Similarity=0.537  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            5689999999999999999999999 899999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.73  E-value=0.066  Score=47.76  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +-+|+|||||.+|.-+|..+...|-+|+|+|.+.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~  202 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID  202 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence            46899999999999999999999999999998753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.72  E-value=0.11  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            4689999999999999999999997 788998765

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.71  E-value=0.11  Score=47.85  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|..|..+|..|+..|+ +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999998654

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.68  E-value=0.081  Score=44.85  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |.+...|.|||||.-|.-.|...+..|++|.|+|++..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            33456899999999999999999999999999998865

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.65  E-value=0.1  Score=48.85  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .+|+|||+|-.|..+|..|++.| .+|+|.+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            48999999999999999999998 89999999853

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.62  E-value=0.098  Score=51.38  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +-.+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            345799999999999999999999999999998875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.61  E-value=0.12  Score=45.70  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5799999999999999999999998 799999664

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.61  E-value=0.12  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            35899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.58  E-value=0.088  Score=50.32  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|+|-|.+|+++|..|.+.|.+|+++|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            568999999999999999999999999999977765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.56  E-value=0.14  Score=47.13  Aligned_cols=36  Identities=25%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ...+|+|||+|-.|.++|+.|+..|+  ++.|+|.+..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            34699999999999999999999987  7999998653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.51  E-value=0.092  Score=48.08  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|+|+|-.|...|+.|+++|.+|+++-|.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            379999999999999999999998888877665

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.46  E-value=0.12  Score=47.08  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||.|.+|..++..|++.|.+|+++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999999999999999999999999998853

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.38  E-value=0.052  Score=42.37  Aligned_cols=32  Identities=34%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      ..+|.|||+|-+|.++|..|.++|+.|.-+..
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s   41 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYS   41 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence            47999999999999999999999999887754

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.34  E-value=0.13  Score=47.32  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      +|+|||+|-+|.++|+.|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            6999999999999999999999  47999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.32  E-value=0.15  Score=42.45  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999999 599999765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.24  E-value=0.15  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35799999999999999999999999999997654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.21  E-value=0.14  Score=41.54  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -..++|+|-|..|-.+|..|+..|.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3579999999999999999999999999999877

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.21  E-value=0.13  Score=50.77  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998875

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.17  E-value=0.16  Score=46.86  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      +..+|+|||+|-.|.++|+.|+..| .++.|+|.+..
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            4679999999999999999999998 58999998764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.14  E-value=0.17  Score=43.61  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            5689999999999999999999998 599999764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.13  E-value=0.16  Score=44.44  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5699999999999999999999998 788998664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.12  E-value=0.13  Score=50.10  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|++|++++..+...|.+|.++|.++.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.11  E-value=0.14  Score=49.90  Aligned_cols=37  Identities=38%  Similarity=0.515  Sum_probs=33.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |..+--|+|||.|-+|.++|..|.+.|++|++.|...
T Consensus         3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            6667789999999999999999999999999999765

>PRK08328 hypothetical protein; Provisional

Probab=93.10  E-value=0.16  Score=44.42  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 688998664

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=93.08  E-value=0.4  Score=44.69  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=80.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR--LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~--~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +...+|||||-+..+++....-  .+.+|.+|-..+......-     |-+    ++  ||-.  ..-...+...+..++
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRP-----PLS----KE--LW~~--~dpn~~k~lrfkqws  244 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRP-----PLS----KE--LWWY--GDPNSAKKLRFKQWS  244 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCC-----Ccc----hh--ceec--CCCChhhheeecccC
Confidence            3568999999988888777754  4678888865554321110     000    11  1100  011123344444443


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      +.+.  .+.|.       ...++++..+|.+...   .++.+..+.+|+.+..++.  .|.++||.+|.+|-+++|+|..
T Consensus       245 GkeR--siffe-------pd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~  310 (659)
T KOG1346|consen  245 GKER--SIFFE-------PDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVR  310 (659)
T ss_pred             Cccc--eeEec-------CCcceeChhHCccccc---CceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcC
Confidence            3222  33333       2334677766654321   2568889999999988775  4677899999999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      ..-
T Consensus       311 Pk~  313 (659)
T KOG1346|consen  311 PKK  313 (659)
T ss_pred             ccc
Confidence            643

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.06  E-value=0.13  Score=50.53  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|+|.|.+|++++..|.+.|.+|++.|..+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            489999999999999999999999999999653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.03  E-value=0.15  Score=49.68  Aligned_cols=34  Identities=21%  Similarity=0.470  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|.+|.++|..|++.|.+|.+.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3579999999999999999999999999999765

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.02  E-value=0.16  Score=45.97  Aligned_cols=33  Identities=36%  Similarity=0.551  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999998 799999874

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.00  E-value=0.18  Score=46.34  Aligned_cols=36  Identities=17%  Similarity=0.485  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+.+|+|||+|-.|.++|+.|+..|.  ++.|+|....
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            35799999999999999999998876  6899997653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.95  E-value=0.9  Score=42.69  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++.+|||+|.|=+|.++...|-..-++|+|+..++
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn   88 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN   88 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence            45789999999999999999988889999998665

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.94  E-value=0.17  Score=44.08  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc---eEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIR---SLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~---V~v~E~~~   37 (409)
                      ..+|+|+|+|-+|..+|..|.+.|.+   +.|++|+.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            46899999999999999999999985   99999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.94  E-value=0.19  Score=40.33  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999665

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.92  E-value=0.15  Score=49.80  Aligned_cols=33  Identities=18%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|+|.|.+|.++|..|++.|++|++.|+++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999765

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.86  E-value=0.2  Score=42.80  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999866

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.86  E-value=0.058  Score=49.79  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=36.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |.+.+||+|+|-|..=+.++..|+..|.+|+.+||++.-
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY   39 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence            778899999999999999999999999999999999853

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.84  E-value=0.15  Score=46.93  Aligned_cols=33  Identities=24%  Similarity=0.546  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .+|+|||+|..|.+.|..|++.|+  +|.++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999985  899999765

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.80  E-value=0.14  Score=47.97  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+||.||+++..++..|. +|+++|+++.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            59999999999999888888886 6777787653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.78  E-value=0.17  Score=45.89  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||.|..|.++|..|+..|.+|++++|+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.75  E-value=0.14  Score=49.91  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            799999999999999999999999999998764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.64  E-value=0.2  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            5789999999999999999999998 599999664

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.63  E-value=0.16  Score=49.59  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|+|.|-+|.++|..|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            3579999999999999999999999999999654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=92.62  E-value=0.21  Score=47.72  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            35799999999999999999999999999998764

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.61  E-value=0.21  Score=43.57  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ++..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            35789999999999999999999998 899999664

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.59  E-value=0.16  Score=46.48  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            7 IVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |.|||+|-.|..+|..|+..|+ +|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999999999887 9999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.57  E-value=0.15  Score=49.84  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLT-TSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~-~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            4457999999999999 69999999999999997653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.52  E-value=0.33  Score=35.01  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~   35 (409)
                      ..+++|+|.|-+|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.44  E-value=0.21  Score=47.28  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            2 EEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         2 ~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            35679999999 9999999999999999999999754

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.42  E-value=0.18  Score=48.55  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||-|.+|.++|..|+++|.+|.++|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5799999999999999999999999999997653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.41  E-value=0.19  Score=45.94  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|..|...|..|++.|++|.++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999997753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.39  E-value=0.23  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            5789999999999999999999998 599999664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.38  E-value=0.16  Score=46.34  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|...|..|++.|++|+++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            489999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=92.38  E-value=0.22  Score=43.67  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG-----------IRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g-----------~~V~v~E~~~   37 (409)
                      ++.+|+|||+|-.|..++..|++.|           .+++|+|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            5679999999999999999999974           3889988654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.36  E-value=1.5  Score=44.17  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhC--CCCeEEeCceEEEEEEe-CCeEE-EE---EcCCC--EEecCEEEEcCCCchHh
Q 015331          108 SLLMEALEREL--PSGTIRYSSKVVSVEES-GLFKL-VN---LADGA--VFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~-~~~~~-v~---~~~g~--~~~ad~vV~AdG~~s~v  164 (409)
                      ..+...|.+.+  .+++++.++.++++..+ ++.+. |.   ..+|+  .+.|+.||.|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            45677776655  36899999999998764 44432 32   23554  57899999999998854

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.36  E-value=0.25  Score=41.98  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=29.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..+++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            358999997 999999999999999999999865

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.35  E-value=0.2  Score=47.34  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=30.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            5 EDIVIVG-AGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         5 ~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .+|+||| .|.-|.++|..|+++|++|.+++++
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            5799999 7999999999999999999999975

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.31  E-value=0.15  Score=52.53  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|.-|...|..++++|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998865

>PRK06849 hypothetical protein; Provisional

Probab=92.21  E-value=0.23  Score=47.29  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..+.+|+|.|++. .|+.+|..|.++|++|+++|..+.
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~   39 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY   39 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            66788999999996 799999999999999999998764

>PRK08223 hypothetical protein; Validated

Probab=92.13  E-value=0.25  Score=44.32  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5789999999999999999999998 788999665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		9e-20
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		4e-17
3all_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		8e-10
3alh_A	379	Higher Resolution And Native Structure Of 2-Methyl-		1e-09
3gmc_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-09
3alk_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-09
3c96_A	410	Crystal Structure Of The Flavin-Containing Monooxyg		2e-08
3gmb_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-08
4hb9_A	412	Crystal Structure Of A Putative Fad Containing Mono		3e-08
2rgj_A	402	Crystal Structure Of Flavin-Containing Monooxygenas		5e-07
3alm_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 11/313 (3%)
Query: 8   VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
           +++GAGI GL+ ++AL + GI              G AI++W N  + +  +G+ D +  
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86
Query: 68  QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
               L+ M      S +  ++ S      R G     V R+ L   +       ++++  
Sbjct: 87  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 146
Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
           +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct: 147 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 206
Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
           +         ++  F+G+G +   +P +    Y+FF+   P+   ++ +       ++  
Sbjct: 207 EIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 266
Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
                + + + A+   T  + I +  +         +  + +G V + GDA H  TPDIG
Sbjct: 267 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 318
Query: 305 QGGCAALEDGIIL 317
           QGGCAA+ED ++L
Sbjct: 319 QGGCAAMEDAVVL 331

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 11/313 (3%)
Query: 8   VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
           +++GAGI GL+ ++AL + GI              G AI++W N  +    +G  D    
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXET 86
Query: 68  QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
               L+        S +  ++ S      R G     V R+ L           ++++  
Sbjct: 87  FGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGK 146
Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
           +V   EE      V   DG+     +LI  DG +S +  W LGF  +  +AG  +  G  
Sbjct: 147 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 206
Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
           +         ++  F+G+G R    P +    Y+FF+   P+   ++ +       ++  
Sbjct: 207 EIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 266
Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
                + + + A+   T  + I +  +         +  + +G V + GDA H  TPDIG
Sbjct: 267 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 318
Query: 305 QGGCAALEDGIIL 317
           QGGCAA ED ++L
Sbjct: 319 QGGCAAXEDAVVL 331

>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R + RS L +AL  R    G  I  +
Sbjct: 73  ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G      L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            +L   + P+ ++ LG G        + F P   + +Y      P N+++   G      
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                +   +P  ++  VE  P      +++  +   RY         + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKAETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
           A H M P + QG   A+ +   L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320

>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R + RS L +AL  R    G  I  +
Sbjct: 73  ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G      L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            +L   + P+ ++ LG G        + F P   + +Y      P N+++   G      
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                +   +P  ++  VE  P      +++  +   RY         + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
           A H M P + QG   A+ +   L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320

>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 41/332 (12%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R + RS L +AL  R    G  I  +
Sbjct: 109 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 163
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G    + L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 164 SEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 215
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            +L   + P+ ++ LG G        + F P   + +Y      P N+++   G      
Sbjct: 216 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLGLMAPAA 267
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                +   +P  ++  VE  P      +++  +   RY         + ++G V + GD
Sbjct: 268 D---PRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 324
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
           A H M P + QG   A+ +   L++ + E S+
Sbjct: 325 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 356

>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R + RS L +AL  R    G  I  +
Sbjct: 73  ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G      L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            +L   + P+ ++ LG G        + F P   + +Y      P N+++   G      
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                +   +P  ++  VE  P      +++  +   RY         + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
           A H M P + QG   A+ +   L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320

>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 137/362 (37%), Gaps = 64/362 (17%)
Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXT-GFAITLWTNAWRALDAV 59
           M E  DI+I GAGI GL+ +LALH+ GI               G  I +   A  AL  +
Sbjct: 1   MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL 60
Query: 60  GISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS----LLMEALE 115
           G+  +L    I    +           SE      GN   +   S+ R     +L+ A+ 
Sbjct: 61  GLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGN--AYPQYSIHRGELQMILLAAVR 118
Query: 116 RELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSVVAKWLGF- 170
             L    +R    V  +EE     L+   DG          VL+G DG++S V   L   
Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD 178
Query: 171 KKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFL-GKGFRYGFLPCNDQTVYW--------- 219
           ++P +  G +  RG T+          F +FL GK      +  ND+  +W         
Sbjct: 179 QRPLSHGGITMWRGVTE----------FDRFLDGK----TMIVANDE--HWSRLVAYPIS 222
Query: 220 ---------FFNW---CPS----NQDKELEGNPDKTKQFVLSKCHDLPE---QVKAIVEN 260
                      NW    PS      D E + N D   + VL    D       ++ ++  
Sbjct: 223 ARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTR 282
Query: 261 TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARC 320
             L  IL  P+  R P    WG   +G + + GDA H M P    G   A+ DGI LA  
Sbjct: 283 NQL--ILQYPMVDRDPLP-HWG---RGRITLLGDAAHLMYPMGANGASQAILDGIELAAA 336
Query: 321 IA 322
           +A
Sbjct: 337 LA 338

>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 132/332 (39%), Gaps = 41/332 (12%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R   RS L +AL  R    G  I  +
Sbjct: 109 ---LQGSHTPPTYETWXHNKSVSKETFN--GLPWRIXTRSHLHDALVNRARALGVDISVN 163
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G    + L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 164 SEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 215
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
            +L   + P+ ++ LG G        + F P   + +Y      P N+++   G      
Sbjct: 216 IRL---IVPRXKKELGHGEWDNTIDXWNFWPRVQRILY-----SPCNENELYLGLXAPAA 267
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                +   +P  ++  VE  P      +++  +   RY         + ++G V + GD
Sbjct: 268 D---PRGSSVPIDLEVWVEXFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 324
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
           A H   P + QG   A  +   L++ + E S+
Sbjct: 325 AAHAXCPALAQGAGCAXVNAFSLSQDLEEGSS 356

>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 115/288 (39%), Gaps = 64/288 (22%)
Query: 104 SVKRSLLMEALERELPSGTIRYSSKVVSVE--ESGLFKLVNLADGAVFKTKVLIGCDGVN 161
           S+ R+ L E L + L + TI+++   V  E  E+G  K+   ADG+     VL+G DG N
Sbjct: 108 SISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIF-FADGSHENVDVLVGADGSN 165
Query: 162 SVVAK-WLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYG----FLPCNDQT 216
           S V K +L F +    G S I G      R  L P     L + FR G     +P   ++
Sbjct: 166 SKVRKQYLPFIERFDVGVSXIIG------RARLTPALTALLPQNFRDGTPNSIVP---KS 216
Query: 217 VYWFF--NW-CPSNQDKE-----------------LEGNPDKTKQFVLSKCHDLPEQVKA 256
             W F   W  P N   E                  +  PD    F      DL  Q + 
Sbjct: 217 PDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDL-VQSRX 275
Query: 257 IVENTPLDSIL-------VSPLRYR-----YPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
           I  +  L +++       +SPL  R      PW+          V + GDA H  TP  G
Sbjct: 276 ISWDPSLHTLVQQSDXENISPLHLRSXPHLLPWK-------SSTVTLLGDAIHNXTPXTG 328
Query: 305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR---NEI 349
            G   AL D ++L + +A  ++     V   KA  D E+  R   NEI
Sbjct: 329 SGANTALRDALLLTQKLASVASGHEELV---KAISDYEQQXRAYANEI 373

>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 130/350 (37%), Gaps = 50/350 (14%)
Query: 6   DIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXT-GFAITLWTNAWRALDAVGISDS 64
           DI+I GAGI GL+ +LALH+ GI               G  I +   A  AL  +G+  +
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS----LLMEALERELPS 120
           L    I    +           SE      GN   +   S+ R     +L+ A+   L  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSEPRGVEAGN--AYPQYSIHRGELQXILLAAVRERLGQ 123
Query: 121 GTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSVVAKWLGF-KKP-A 174
             +R    V  +EE     L+   DG          VL+G DG++S V   L   ++P +
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 175 FAGRSDIRGCTDFKLRHGLEPKF-----QQFLGKGFRYGFLPCNDQTVYWFFNW---CPS 226
             G +  RG T+F     L+ K       +   +   Y     +        NW    PS
Sbjct: 184 HGGITXWRGVTEFD--RFLDGKTXIVANDEHWSRLVAYPISARHAAEGKSLVNWVCXVPS 241
Query: 227 NQ----DKELEGNPDKTKQFVLS----------KCHDLPEQVKAIVENTPLDSILVSPLR 272
                 D E + N D   + VL              DL  + + I++   +D     PL 
Sbjct: 242 AAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVDR---DPLP 298
Query: 273 YRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIA 322
           +       WG   +G + + GDA H   P    G   A+ DGI LA  +A
Sbjct: 299 H-------WG---RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALA 338

>pdb|3ALM|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant C294a Length = 379

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 36/227 (15%)
Query: 9   IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
           + G G AGLT ++AL + G               G  I LW N  R L+ +G  D +   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69  HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
              LQG     +      ++   K   N  G   R + RS L +AL  R    G  I  +
Sbjct: 73  ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
           S+ V+ +  G      L  G V +  +++G DGV S V   +GFK+  +  +  +     
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKG---------------FRYGFLPCNDQTVY 218
            +L   + P+ ++ LG G                R  + PCN+  +Y
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	9e-86
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	1e-64
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-61
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	4e-55
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	9e-55
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	9e-31
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-28
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-27
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-24
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	6e-24
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	4e-23
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	7e-22
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	6e-20
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-19
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	1e-19
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	3e-19
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	5e-18
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-17
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-15
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-14
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	2e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-09
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-07
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-07
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-07
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	3e-07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	3e-07
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	9e-07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-05
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	2e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	3e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	3e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-05
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	4e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	5e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	5e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	6e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	8e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	8e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	1e-04
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	1e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-04
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-04
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	3e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	3e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	3e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	4e-04
4fk1_A	304	Putative thioredoxin reductase; structural genomic	5e-04
3dme_A	369	Conserved exported protein; structural genomics, P	6e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	8e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	8e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  266 bits (681), Expect = 9e-86
 Identities = 81/371 (21%), Positives = 148/371 (39%), Gaps = 29/371 (7%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
            +     +++GAGI GL+ ++AL + GI   V E+ + ++  G AI++W N  + +  +G
Sbjct: 20  FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLG 79

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           + D +      L+ M      S +  ++ S      R G     V R+ L   +      
Sbjct: 80  MGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR 139

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL--GFKKPAFAGR 178
            ++++  +V   EE      V   DG+     +LI  DG +S +  W+     +  +AG 
Sbjct: 140 DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGY 199

Query: 179 SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDK 238
            +  G  +         ++  F+G+G +   +P +    Y+FF+         L  + D 
Sbjct: 200 VNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDV---PLPAGLAEDRDT 256

Query: 239 TKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP 298
            +  +          V+ ++      +     +    P+        +G V + GDA H 
Sbjct: 257 LRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSR-L---VRGRVALLGDAGHS 312

Query: 299 MTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATER 358
            TPDIGQGGCAA+ED ++L     +                D          L+ Y  +R
Sbjct: 313 TTPDIGQGGCAAMEDAVVLGAVFRQT--------------RDIAA------ALREYEAQR 352

Query: 359 RWRSCELISMA 369
             R  +L+  A
Sbjct: 353 CDRVRDLVLKA 363

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  210 bits (537), Expect = 1e-64
 Identities = 76/378 (20%), Positives = 130/378 (34%), Gaps = 51/378 (13%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLR 66
             + G G AGLT ++AL + G    + E S  LR  G  I LW N  R L+ +G  D + 
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVL 73

Query: 67  QQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSG--TIR 124
           Q                     +S +T     G   R + RS L +AL     +    I 
Sbjct: 74  QGSHTPPTYETWMH-----NKSVSKET---FNGLPWRIMTRSHLHDALVNRARALGVDIS 125

Query: 125 YSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFK-KPAFAGRSDIRG 183
            +S+ V+ +  G    + L  G V +  +++G DGV S V   +GFK     +    IR 
Sbjct: 126 VNSEAVAADPVG---RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRL 182

Query: 184 CTDFKLRHGLEPKFQQ------FLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPD 237
                 +     ++        F  +  R  + PCN+  +Y       +        +  
Sbjct: 183 IVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGL---MAPAADPRGSSVP 239

Query: 238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH 297
              +  +     L   +    +                  +  W   ++G V + GDA H
Sbjct: 240 IDLEVWVEMFPFLEPCLIEAAK----LKTARYDKYETTKLDS-W---TRGKVALVGDAAH 291

Query: 298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATE 357
            M P + QG   A+ +   L++ + E S                E+       L  + T 
Sbjct: 292 AMCPALAQGAGCAMVNAFSLSQDLEEGS--------------SVED------ALVAWETR 331

Query: 358 RRWRSCELISMAYIVGYD 375
            R  +    +++     +
Sbjct: 332 IRPITDRCQALSGDYAAN 349

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  203 bits (518), Expect = 1e-61
 Identities = 68/383 (17%), Positives = 136/383 (35%), Gaps = 39/383 (10%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE--SSESLRVTGFAITLW-TNAWRALD 57
           +  D+++ I+G G  GLT +  L + GI   V E  +    R+ G  + L   +   A+ 
Sbjct: 23  LLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMK 82

Query: 58  AVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERE 117
             G+  +     + +   +          + +S K        +   + R+ L   L   
Sbjct: 83  KAGLLQTYYDLALPMGVNIADEK-----GNILSTKNVKPENRFDNPEINRNDLRAILLNS 137

Query: 118 LPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAG 177
           L + T+ +  K+V +E       +   +       ++I  +G  S V K++   +    G
Sbjct: 138 LENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETG 197

Query: 178 RSDIRG-CTDFKLRHGLEPKFQ-----QFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDK 230
             +I+      ++      +           +G      P N+  +++  ++  P     
Sbjct: 198 TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKN 257

Query: 231 ELE---GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKG 287
           + +    N +    F+L +  D  E+ K ++  T   S +       +P E  W +    
Sbjct: 258 QTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTT--LSFVGLAT-RIFPLEKPWKSKRPL 314

Query: 288 NVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRN 347
            + + GDA H M P  GQG  + L D +IL+  +A+                  EE    
Sbjct: 315 PITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGK------------FNSIEE---- 358

Query: 348 EIGLKRYATERRWRSCELISMAY 370
              +K Y  +      E    + 
Sbjct: 359 --AVKNYEQQMFIYGKEAQEEST 379

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  186 bits (475), Expect = 4e-55
 Identities = 97/422 (22%), Positives = 143/422 (33%), Gaps = 54/422 (12%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESLRVTGFAITLWTNAWRALDAV 59
           M E  DI+I GAGI GL+ +LALH+ GI    +LESS  +R  G  I +   A  AL  +
Sbjct: 1   MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL 60

Query: 60  GISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKR----SLLMEALE 115
           G+  +L    I    +                  +     +   S+ R     +L+ A+ 
Sbjct: 61  GLGPALAATAIPTHELRYIDQSG-ATVWSEPRGVE-AGNAYPQYSIHRGELQMILLAAVR 118

Query: 116 RELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK----VLIGCDGVNSVVAKWL-GF 170
             L    +R    V  +EE     L+   DG          VL+G DG++S V   L   
Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD 178

Query: 171 KKPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPC-------NDQTVYWFFN 222
           ++P    G +  RG T+F      +           R    P            V W   
Sbjct: 179 QRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCM 238

Query: 223 WCPSNQDKELEGNPDKT----KQFVLSKCHDLPEQVKAIVEN-TPLDSILVSPLRYRYPW 277
             PS    +L+   D       + VL    D       I +  T    IL  P+  R P 
Sbjct: 239 -VPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPL 297

Query: 278 EVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKA 337
              W    +G + + GDA H M P    G   A+ DGI LA  +A  +            
Sbjct: 298 PH-W---GRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNA------------ 341

Query: 338 GEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGYD----GKIINFLRDKIFSVLLGR 393
             D          L+ Y   RR  + ++I        +           +      + G 
Sbjct: 342 --DVAA------ALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGS 393

Query: 394 LM 395
             
Sbjct: 394 YR 395

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  185 bits (471), Expect = 9e-55
 Identities = 73/393 (18%), Positives = 117/393 (29%), Gaps = 69/393 (17%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLE-SSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           I +VG  I+GLT +L L   G+   V E S + L   G  I +       L   G+   L
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE--L 65

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRY 125
               +    M    +++ +    +       R            +   L           
Sbjct: 66  DSISVPSSSMEYVDALTGERVGSVPA---DWRFTS------YDSIYGGLYELFGPERYHT 116

Query: 126 SSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCT 185
           S  +V + +      +  +DG   +   +IG DG  SVV K L   +P +AG    RG  
Sbjct: 117 SKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVL 176

Query: 186 DFK-----LRHGLEPKFQQFLGKGFRYGFLPCNDQ--------TVYWFFNWCPSNQDKEL 232
                   + +    KF   L         P   +           W++N        EL
Sbjct: 177 QPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDEL 236

Query: 233 ----------------EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYP 276
                             NP   +QF  SK   L +  + +V N    S  V+ +     
Sbjct: 237 MTDVRGIRLPTSVHNNSLNPHNLRQF-HSKGESLFKPFRDLVLNA--SSPFVTVV-ADAT 292

Query: 277 WEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDK 336
            +        G V + GDA     P    GG  A +D   LA    +             
Sbjct: 293 VDR-M---VHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKNHD---------- 338

Query: 337 AGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369
                         L+ + T +  +    ++  
Sbjct: 339 ----------LRGSLQSWETRQLQQGHAYLNKV 361

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score =  120 bits (302), Expect = 9e-31
 Identities = 50/371 (13%), Positives = 102/371 (27%), Gaps = 57/371 (15%)

Query: 7   IVIVGAGIAGLTT--SLALHRLGIRSLVLESSESLRVTGFAITLWTNA-WRALDAVGISD 63
           I+++GAG AGL     L   R      ++E ++   V G+ + L         + +   D
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSG-- 121
           +  + + Q          +         +      G  +  V+R  L+ AL  +  S   
Sbjct: 63  APERLNPQFLEDFKLVHHN---------EPSLMSTGVLLCGVERRGLVHALRDKCRSQGI 113

Query: 122 TIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDI 181
            IR+ S ++              +  +    +++  +GVN   A +     P      + 
Sbjct: 114 AIRFESPLLE-----------HGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNK 162

Query: 182 RG-CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDK-- 238
                  +L   +   F+      F       +D    +          +   G   +  
Sbjct: 163 YIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEA 222

Query: 239 TKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP 298
           + ++V             + +        ++    R            G + + GDA   
Sbjct: 223 SAEYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHDRC---------HDGKLVLLGDALQS 273

Query: 299 MTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATER 358
               IG G   A+    +L + +                             LKR+    
Sbjct: 274 GHFSIGHGTTMAVVVAQLLVKALCTEDG--------------------VPAALKRFEERA 313

Query: 359 RWRSCELISMA 369
                     A
Sbjct: 314 LPLVQLFRGHA 324

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  114 bits (288), Expect = 1e-28
 Identities = 75/380 (19%), Positives = 130/380 (34%), Gaps = 61/380 (16%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
            +   D++I G GI G   +  L R G R +V+E +   R    A  L     R ++A G
Sbjct: 3   TDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAG 62

Query: 61  ISDSLRQQHIQ-LQGMVV---ASSVSCQPASEISFKTKGNRGGH--EVRSVKRSLLMEAL 114
           +   + ++  +    + V      +     S +                S++R +L E +
Sbjct: 63  LLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVD----ARGYFILMPCESLRRLVL-EKI 117

Query: 115 ERELPSGTIRYSSKVVSVE--ESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAK-WLGFK 171
           + E  +  + + +++ +V+  E      V L DG V + +V++G DG+ S V +  L   
Sbjct: 118 DGE-ATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDI- 175

Query: 172 KPAFAGRSDIRGC--TDFKLRHGLEPK-FQQFLGKGFRYGFLPCNDQTVYWFFNWC-PSN 227
                 R          F L   +  +       +G    F P              P  
Sbjct: 176 --DVERRPYPSPMLVGTFALAPCVAERNRLYVDSQGGLAYFYPIGFDRARLV--VSFPRE 231

Query: 228 QDKELEGNPDK------TKQFVLSKCHDLPEQVKAIVENT--PLDSILVSPLRYRYPWEV 279
           + +EL  +          ++FV  +  +    V         P+  + +   RY      
Sbjct: 232 EARELMADTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLD--RYW----- 284

Query: 280 LWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGE 339
                   NV + GDA H + P  GQG   A+ED   LA  +  A           +   
Sbjct: 285 ------ADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLAL----------RDAC 328

Query: 340 DKEEFKRNEIGLKRYATERR 359
             E+       L  Y  ER 
Sbjct: 329 ALEDA------LAGYQAERF 342

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score =  112 bits (282), Expect = 1e-27
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 35/342 (10%)

Query: 1   MEEDE-DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAI--TLWTNAWRALD 57
           M+ ++ D++++GAG AG   +  +++ G +  ++E  +  R   F I  +L       LD
Sbjct: 1   MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR---FVIGESLLPRCMEHLD 57

Query: 58  AVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS-----LLME 112
             G  D+++ Q  Q      A  V  +  ++ +F  + + G +    V R      L  E
Sbjct: 58  EAGFLDAVKAQGFQQ--KFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADE 115

Query: 113 ALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA----VFKTKVLIGCDGVNSVVAKWL 168
           A  +      + Y   V  ++  G   +  + D        + + +I   G   V+ +  
Sbjct: 116 AARQ---GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMF 172

Query: 169 GFKKP-----AFAGRSDIRGCTDFKLRH-GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFN 222
           G  KP          + I+                            +P ++      F 
Sbjct: 173 GLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGF- 231

Query: 223 WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWG 282
               +   E  G P++  + +++    + E+ K    +        +   Y      L+G
Sbjct: 232 VGEPSYFDEYTGTPEERMRAMIANEGHIAERFK----SEEFLFEPRTIEGYAISASKLYG 287

Query: 283 NISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEA 324
           +       + G+A   + P    G   A+E G    +   + 
Sbjct: 288 D----GFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQF 325

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score =  104 bits (260), Expect = 2e-24
 Identities = 56/427 (13%), Positives = 129/427 (30%), Gaps = 59/427 (13%)

Query: 1   MEEDE---DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAI---TLWTNAWR 54
           M       D++++G G  G T +  +   G R L+LE     R     I    L      
Sbjct: 1   MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR---HQIGESLLPATVHG 57

Query: 55  ALDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS-----L 109
               +G++D +++    ++                 F    +        V+R+     L
Sbjct: 58  ICAMLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDML 117

Query: 110 LMEALERELPSGTIRYSSKVVSVEESGLFKL---VNLADGA--VFKTKVLIGCDGVNSVV 164
           L  +         +R   +V+ V   G   +       +G   +   + ++   G  + V
Sbjct: 118 LRNSER---KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRV 174

Query: 165 AKWLGFKKP-----AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYW 219
           ++ +G +         A            L    +        +   + ++P +D     
Sbjct: 175 SQAVGERVYSRFFQNVALYGYFENGKR--LPAPRQGNILSAAFQDGWFWYIPLSDTLT-- 230

Query: 220 FFNW---CPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYP 276
             +          + ++   +      + +C  + E +      T + +     +R R  
Sbjct: 231 --SVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLA---PATRVTTGDYGEIRIRKD 285

Query: 277 W----EVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGV 332
           +       W N     + + GDA   + P    G   A    +++AR I          +
Sbjct: 286 YSYCNTSFWKN----GMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAG---EM 338

Query: 333 TKDKAGED-----KEEFKRNEIGLKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIF 387
           ++ +  E+     + E+      L  +    +       S   I+  + +      +   
Sbjct: 339 SEQRCFEEFERRYRREYGNFYQFLVAFYDMNQDTDSYFWSARKIINTEERA----NEAFV 394

Query: 388 SVLLGRL 394
            ++ GR 
Sbjct: 395 RLIAGRS 401

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score =  103 bits (257), Expect = 6e-24
 Identities = 74/410 (18%), Positives = 124/410 (30%), Gaps = 42/410 (10%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAI--TLWTNAWRALDAVGISD 63
            + I+G G AG    L LH+LG    + E S   R   + +  +L       L+ +G+ +
Sbjct: 25  KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR---YRVGESLLPGTMSILNRLGLQE 81

Query: 64  SLRQQ-HIQLQGMVVASSVSCQPASEISFKTKGNRGGHE-VRSVKRS-----LLMEALER 116
            +  Q +++             P +      K      +    VKR      LL EA  R
Sbjct: 82  KIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSR 141

Query: 117 ELPSGTIRYSSKVVSV--EESGLFKLVNLADGA--VFKTKVLIGCDGVNSVVAKWLGFKK 172
                T+   + V  V   +     L     G     ++  +I   G    +++ LG ++
Sbjct: 142 ---GITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQ 198

Query: 173 P-AFAGRSDIRGCTDFKLRHGLE-PKFQQFLGKGFRYGFL---PCNDQTVYWFFNWCPSN 227
              F     +   + FKL+   E           F  G++   P  D           S 
Sbjct: 199 YDEFYRNFAVW--SYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSK 256

Query: 228 QDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKG 287
             +  E   D      L+KC    + +    +   +  +      + Y  EV   +    
Sbjct: 257 SAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIVQD----WSYDTEVFSAD---- 308

Query: 288 NVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRN 347
              + GDA     P   QG   A +  +  A  I   +     G  KD          R 
Sbjct: 309 RFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRH---GDEKDAVHAWYNRTYRE 365

Query: 348 EIG-----LKRYATERRWRSCELISMAYIVGYDGKIINFLRDKIFSVLLG 392
                   L  + T   +   +          +       R K F  L G
Sbjct: 366 AYEQYHQFLASFYTFASFTEPDSEFWRKRRITESDDDRLTRKKWFESLAG 415

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score =  100 bits (250), Expect = 4e-23
 Identities = 70/360 (19%), Positives = 121/360 (33%), Gaps = 73/360 (20%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGI 61
           + + D+++VGAG+ GL+T++ L R G+R LV+E    L     A          L   G+
Sbjct: 3   DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGV 62

Query: 62  SDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS------------- 108
           +D + +                +       +T        V + +               
Sbjct: 63  ADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKL 122

Query: 109 --LLMEALERELPSGTIRYSSKVVSVEE------SGLFKLVNLADGA-VFKTKVLIGCDG 159
             +L+    R+   G IR+ ++++S  +      +G+   +   DG    +   L+G DG
Sbjct: 123 EPILLAQA-RKHG-GAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADG 180

Query: 160 VNSVVAKWLGFKKPAFAGRSDIRGCT--DFK--LRHGLEP---KFQQFLGKGFRYGFLPC 212
             S+V + LG       G   +       F   L   +EP    +       F+  F P 
Sbjct: 181 NRSLVRESLGI---GRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPT 237

Query: 213 NDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVEN-TPLDSILVSPL 271
           +    +  F         E E   D T           P++   ++        +    +
Sbjct: 238 DRPDRHTLFV---EYDPDEGERPEDFT-----------PQRCVELIGLALDAPEVKPELV 283

Query: 272 -------------RYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318
                        R+R           +G V +AGDA     P  G  G AA+ DG  LA
Sbjct: 284 DIQGWEMAARIAERWR-----------EGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLA 332

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 95.5 bits (238), Expect = 7e-22
 Identities = 72/380 (18%), Positives = 128/380 (33%), Gaps = 48/380 (12%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF--AITLWTNAWRALDAVGISD 63
            + I+GAG +GL     LH+ GI +++LE      V G   A  L       L   G+  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR-----SVKRSLLMEALEREL 118
            + +  +  +G+ +A               K   GG  V       V R  LMEA E   
Sbjct: 64  RMARDGLVHEGVEIAF-----AGQRRRIDLKRLSGGKTVTVYGQTEVTR-DLMEAREAC- 116

Query: 119 PSGTIRYSSKVVSVEESGLFKLVNL-ADGAV--FKTKVLIGCDGVNSVVAKWLGFKKPAF 175
            + T+  +++V   +  G    V    DG         + GCDG + +  + +  ++   
Sbjct: 117 GATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKV 176

Query: 176 AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN 235
             R    G                +      +        T   ++   P ++  E + +
Sbjct: 177 FERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVE-DWS 235

Query: 236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRY--PWEVLWGNISKGNVCVAG 293
            ++    + ++   LP +V   +   P     ++PLR     P          G + +AG
Sbjct: 236 DERFWTELKAR---LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-------QHGRLFLAG 285

Query: 294 DAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKR 353
           DA H + P   +G   A  D   L R + +A  E                       L+R
Sbjct: 286 DAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGE------------------LLER 327

Query: 354 YATERRWRSCELISMAYIVG 373
           Y+     R  +    ++ + 
Sbjct: 328 YSAICLRRIWKAERFSWWMT 347

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 67/353 (18%), Positives = 101/353 (28%), Gaps = 93/353 (26%)

Query: 4   DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISD 63
           D  +++VGAG AG+  +  L   G+  +VLE           +          D  GI  
Sbjct: 11  DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILP 70

Query: 64  SLRQQHIQLQGMVVASSVSC--------------QPASEISFKTKGNRGGHEVRSVKRSL 109
              +     QG      +                Q  +E                   + 
Sbjct: 71  RFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTE-------------------TH 111

Query: 110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA---VFKTKVLIGCDGVNSVVAK 166
           L +     L    IR   +V+S+ + G    V +         +   L+GCDG  S V K
Sbjct: 112 LEQWA-TGLG-ADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRK 169

Query: 167 WLGFKKPAFAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVY 218
             GF    F G +        DI+G         L+P+       G      P     + 
Sbjct: 170 AAGF---DFPGTAATMEMYLADIKG-------VELQPRMIGETLPGGMVMVGPLPG-GIT 218

Query: 219 WFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPL------- 271
                      +  E  P               E   A    T  D     P+       
Sbjct: 219 RIIVCERGTPPQRRETPP------------SWHEVADAWKRLTGDDIAHAEPVWVSAFGN 266

Query: 272 ------RYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318
                  YR           +G V +AGD+ H   P  GQG   +++D + L 
Sbjct: 267 ATRQVTEYR-----------RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLG 308

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 57/337 (16%), Positives = 97/337 (28%), Gaps = 58/337 (17%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           D++I+G G  G+  +L L    +  LV+E ++         T+   +       G++  +
Sbjct: 28  DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQI 87

Query: 66  RQQ---HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLL----MEALEREL 118
           R               + V       I   T   R   E      ++     +  L  E 
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEA 147

Query: 119 PSGTIRYSSKVVSVEESG---LFKLVNLADGA--VFKTKVLIGCDGVNSVVAKWLGFKKP 173
               +R  S++ S E+        + +L  GA      + L+ CDG +S   K LG    
Sbjct: 148 VGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGI--- 204

Query: 174 AFAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCP 225
               R           R      L       F   +        L   D    +      
Sbjct: 205 DAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGLYRLTVGV 264

Query: 226 SNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIV-ENTPLDSILVSPL--------RYRYP 276
            +  K                  D  E V+  V  +T ++ +  S           +   
Sbjct: 265 DDASKSTM---------------DSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFS-- 307

Query: 277 WEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED 313
                     G V + GDA H ++P  G G    +  
Sbjct: 308 ---------AGRVFLTGDAAHTLSPSGGFGMNTGIGS 335

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 66/345 (19%), Positives = 102/345 (29%), Gaps = 64/345 (18%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
                D+V+VG G  GL  +  L   G+ +LVLE          A  L       LD  G
Sbjct: 46  AALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRG 105

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGH---------EVRSVKRSLLM 111
           + D   +     +G+  A          + F     R  +         E      +LL 
Sbjct: 106 LLDRFLEGTQVAKGLPFAG----IFTQGLDFGLVDTRHPYTGLVPQSRTE------ALLA 155

Query: 112 EALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA---VFKTKVLIGCDGVNSVVAKWL 168
           E   RE     I    +V  + +      V +A  +     + +  +GCDG  S V +  
Sbjct: 156 EHA-REAG-AEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLA 213

Query: 169 GFKKPAFAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWF 220
                 F G           +           +  ++++         F P       W 
Sbjct: 214 AD---RFPGTEATVRALIGYVTTPERE-----VPRRWERTPDGILVLAFPPEGGLGPGWS 265

Query: 221 FNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVL 280
            +                T          L +   A+         L  P+     W   
Sbjct: 266 SSS---TGHSPAADEGPVT----------LEDLGAAVARVRGTPLTLTEPVS----WLSR 308

Query: 281 WGNIS-------KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318
           +G+ S        G V +AGDA H   P  GQG    L+D + L 
Sbjct: 309 FGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLG 353

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 70/355 (19%), Positives = 100/355 (28%), Gaps = 93/355 (26%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGI 61
             D  +++VGAG AGL  +  L   G+  +VLE           +          D  GI
Sbjct: 10  RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGI 69

Query: 62  SDSLRQQHIQLQGMVVASSVSC--------------QPASEISFKTKGNRGGHEVRSVKR 107
             +        QG      V                Q  +E                   
Sbjct: 70  LPAFGPVETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTE------------------- 110

Query: 108 SLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA---VFKTKVLIGCDGVNSVV 164
           S+L E          +     V ++ + G   +V +          T+ ++GCDG  S V
Sbjct: 111 SVLEEWA-LGRG-AELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTV 168

Query: 165 AKWLGFKKPAFAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT 216
            K  GF    F G S        DIRGC        + P+              P  D  
Sbjct: 169 RKAAGF---DFPGTSASREMFLADIRGC-------EITPRPIGETVPLGMVMSAPLGD-G 217

Query: 217 VYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPL----- 271
           V            +   G P               E   A    T  D     P+     
Sbjct: 218 VDRIIVCERGAPARRRTGPP------------PYQEVAAAWQRLTGQDISHGEPVWVSAF 265

Query: 272 --------RYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318
                    YR           +G V +AGD+ H   P  GQG   +++D + L 
Sbjct: 266 GDPARQVSAYR-----------RGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLG 309

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 63/396 (15%), Positives = 118/396 (29%), Gaps = 94/396 (23%)

Query: 1   MEEDE-DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR----VTGFAITLWTNAWRA 55
           M+E + D++I+G G AG + +  L R G++ L+++S    R      G A++     +  
Sbjct: 2   MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS--KAHFDK 59

Query: 56  LDAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS-----LL 110
           L          +  I   G+ + S          +  T    G      +        +L
Sbjct: 60  LGMPYPKGEELENKI--NGIKLYS------PDMQTVWTVNGEGF----ELNAPLYNQRVL 107

Query: 111 MEALERELPSG-TIRYSSKVVSVEESG------LFKLVNLADGAVFKTKVLIGCDGVNSV 163
            EA +     G  I   +  +            +       +     +KV++   G +  
Sbjct: 108 KEAQD----RGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163

Query: 164 VAKWLGFKKP----------AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCN 213
               L  + P            A R  +    D +    L     Q    G  Y      
Sbjct: 164 FRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGG-YW----- 217

Query: 214 DQTVYWFFNWCPSNQD--------KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDS 265
                W+F   P  ++        +   G P   + +         ++    V+ + L  
Sbjct: 218 -----WYF---PKGKNKVNVGLGIQGGMGYPSIHEYY-----KKYLDKYAPDVDKSKLLV 264

Query: 266 ILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEAS 325
              + +  R P   +  N     + V GD+   + P  G G  +A+  G   A+ I  A 
Sbjct: 265 KGGALVPTRRPLYTMAWN----GIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320

Query: 326 TEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWR 361
                     + G+          GL        + 
Sbjct: 321 ----------ETGDFSAS------GLWDM--NICYV 338

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 76.9 bits (188), Expect = 2e-15
 Identities = 60/333 (18%), Positives = 91/333 (27%), Gaps = 25/333 (7%)

Query: 7   IVIVGAGIAGLTTSLALHRLGIRSLVLE--SSESLRVTGFAITLWTNAWRALDAVGISDS 64
           I IVGAG AGL   L L +  +   V      +         T+  NA      V +  +
Sbjct: 25  IGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVN 84

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEV-RSVKRSLLMEALERELPSGTI 123
                              QP   + F          V   + + +LM ALE     G  
Sbjct: 85  EWPSEEFGYFGHYYYVGGPQP---MRFYGDLKAPSRAVDYRLYQPMLMRALEAR--GGKF 139

Query: 124 RYSSKVVSVEES--GLFKLVNLADGAVFKTKVLIGCDGVNSVVAK---WLGFK-KPAFAG 177
            Y +      E     + L+ +  G     K +      NS   K    L          
Sbjct: 140 CYDAVSAEDLEGLSEQYDLLVVCTGKYALGK-VFEKQSENSPFEKPQRALCVGLFKGIKE 198

Query: 178 RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCND---QTVYWFFNWCPSNQDKELEG 234
                    F   HG   +       G     +  N                +    L+ 
Sbjct: 199 APIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDL 258

Query: 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSIL--VSPLRYRYPWEVLWGNISKGNVCVA 292
             +K  +       +  +  +  + N+ LD +   V P   R     L    +   +   
Sbjct: 259 MLEKLGKH-HPSVAERIDPAEFDLANSSLDILQGGVVPAF-RDGHATLN---NGKTIIGL 313

Query: 293 GDAFHPMTPDIGQGGCAALEDGIILARCIAEAS 325
           GD    + P +GQG   A     IL   I   S
Sbjct: 314 GDIQATVDPVLGQGANMASYAAWILGEEILAHS 346

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 75.0 bits (184), Expect = 1e-14
 Identities = 72/446 (16%), Positives = 142/446 (31%), Gaps = 88/446 (19%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGFAITLWTNAWRAL--- 56
           +    D++IVG G AGLT +  L     IR+ ++E  E     G A  +     R +   
Sbjct: 29  VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIAC---RTMEMF 85

Query: 57  DAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR--------SVKRS 108
           +A   +DS+ ++   +  +        QP          +               +    
Sbjct: 86  EAFEFADSILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHD 145

Query: 109 LLMEALERELPSGTIRYSSKVVSVE------ESGLFKLVNLADGA------VFKTKVLIG 156
             +E +          Y+ +V+ V+      +  +   +   D A        + + ++G
Sbjct: 146 HYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVG 205

Query: 157 CDGVNSVVAKWLGFKKPAFAGRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYG 208
           CDG  S V + +G +     G S        D+   TDF               +     
Sbjct: 206 CDGARSNVRRAIGRQ---LVGDSANQAWGVMDVLAVTDF----PDVRYKVAIQSEQGNVL 258

Query: 209 FLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILV 268
            +P     +  F+         E   + + T + ++          + ++    L+  + 
Sbjct: 259 IIPREGGHLVRFYVEMDKLDADERVASRNITVEQLI-------ATAQRVLHPYKLE--VK 309

Query: 269 SPL-------------RYR-YPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG 314
           +               +Y      V   +     V +AGDA H  +P  GQG   +++D 
Sbjct: 310 NVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDS 369

Query: 315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374
             L   +A         V + +   +          L  Y++ER+  + +LI       +
Sbjct: 370 FNLGWKLA--------AVLRKQCAPE---------LLHTYSSERQVVAQQLI------DF 406

Query: 375 DGKIINFLRDKIFSVLLGRLMMKILE 400
           D +      D       G +  K  +
Sbjct: 407 DREWAKMFSDPAKEGGQGGVDPKEFQ 432

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 75/443 (16%), Positives = 131/443 (29%), Gaps = 125/443 (28%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLAL-----HRLGIRSLVLESSESLRVTGFAITLWTNAWRA 55
            E   D++IVGAG AGL  +  L      +  ++  +++   +    G A  L      +
Sbjct: 5   SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 64

Query: 56  LDAVGISDSLRQQ----------------HIQLQGMVVASSVSC---------QPASEIS 90
           L  +G++D +  +                HI+    +  +             Q   E  
Sbjct: 65  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERR 124

Query: 91  FKTKGNRGGHEVRSVKRSLLMEALE---------------------RELPSGTIRYSSKV 129
                         V+R L+ E +E                      E  S  +++  K 
Sbjct: 125 ILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKT 184

Query: 130 VSVEESGLFKLVNLADGAV-------------FKTKVLIGCDGVNSVVAKWLGFKKPAFA 176
            +       +     D                   K +IGCDG +S V + LGF+     
Sbjct: 185 ENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFE---MI 241

Query: 177 GRS--------DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ 228
           G          D    ++F        +      +      +P  +  V ++        
Sbjct: 242 GEQTDYIWGVLDAVPASNFPDIR---SRCAIHSAESGSIMIIPRENNLVRFYV------- 291

Query: 229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNI---- 284
             +L+   +K  +   +K    PE V A  +       +  P  +    ++ W       
Sbjct: 292 --QLQARAEKGGRVDRTKFT--PEVVIANAKK------IFHPYTFDVQ-QLDWFTAYHIG 340

Query: 285 --------SKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDK 336
                       V +AGDA H  +P  GQG   ++ D   L   +          V   +
Sbjct: 341 QRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLG--------LVLTGR 392

Query: 337 AGEDKEEFKRNEIGLKRYATERR 359
           A  D          LK Y  ER+
Sbjct: 393 AKRDI---------LKTYEEERQ 406

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 49/188 (26%)

Query: 3   EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGIS 62
           +  D+V++G G +GL+    L R G+  ++L++       G     W +AW         
Sbjct: 2   DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA--SPGG----AWQHAW--------- 46

Query: 63  DSLRQQHIQLQGMVVASSVSC-----QPASEISFKTKGNRGGHEVRSVKRSLLMEALER- 116
            SL         +   +  S       PAS+  +  +      EV +      +   E+ 
Sbjct: 47  HSLH--------LFSPAGWSSIPGWPMPASQGPYPAR-----AEVLA-----YLAQYEQK 88

Query: 117 -ELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF 175
             LP   +    +V  V   G    V   DG  +  + +I   G     A       P +
Sbjct: 89  YALP---VLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWG-EAYT-----PEY 139

Query: 176 AGRSDIRG 183
            G     G
Sbjct: 140 QGLESFAG 147

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 15/81 (18%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-------SLRVTGFAI------- 46
              + + ++GAG++GL  +  L   G+   V E+         S+   G          
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTM 69

Query: 47 -TLWTNAWRALDAVGISDSLR 66
               +    +D++G+ +  +
Sbjct: 70 TESEGDVTFLIDSLGLREKQQ 90

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41
           +V++G G AGL ++  L + G +  VLE+    R 
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEART--RP 46

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRS-LVLESS-------ESLRVTGFAI------ 46
          + +D  I I+GAG AGL   + L + G     +LE +        S    G         
Sbjct: 3  ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIM 62

Query: 47 --TLWTNAWRALDAVGIS 62
              +      +D  G  
Sbjct: 63 GVPSYDTIQEIMDRTGDK 80

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-------SLRVTGFAI--------TLWT 50
          ++ +VG GI+GL  +  L   G  +++LESS        +  + G+ +            
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREP 77

Query: 51 NAWRALDAVGISDSLRQQH 69
                 A+ +   +R   
Sbjct: 78 ATRALAAALNLEGRIRAAD 96

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41
           +VIVGAG+AGL+ +  L   G +  VLE+SE  R 
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RP 68

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLW 49
          M    D+V+VG GI+G+  +  LH  G+  +VLE+ +  RV G   TL 
Sbjct: 1  MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYTLR 47

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41
          D+ IVGAG +GL  + AL + G+   V+E+ +  RV
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RV 40

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG 43
          D ++VG G +GL  +  L   G + L+LE  E  R+ G
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE--RLGG 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 56/206 (27%)

Query: 236 PDKTKQFVLS-KCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
                 FV +  C D+ +  K+I+    +D I++S         + W  +SK    V   
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--Q 80

Query: 295 AFHPMTPDIGQGGCAALED--GIILARCIAEASTEKPSGVTK------DKAGEDKEEF-K 345
            F      + +     L      +++    E    +PS +T+      D+   D + F K
Sbjct: 81  KF------VEE----VLRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 346 RNEIGLKRYATERRWRSC--ELISMAYIV-----GYDGK---IINFLRD---------KI 386
            N   + R     + R    EL     ++     G  GK    ++             KI
Sbjct: 129 YN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKI 184

Query: 387 FSVLLGR-----LMMKILEFDCGKLC 407
           F + L        ++++L+    KL 
Sbjct: 185 FWLNLKNCNSPETVLEMLQ----KLL 206

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 52/430 (12%), Positives = 117/430 (27%), Gaps = 146/430 (33%)

Query: 51  NAWRALDAVGISDSLRQ----QHIQLQGM------VVASSVSCQPASEISFKTKGNRGGH 100
           N  R    + +  +L +    +++ + G+       VA  V          + K +    
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIF 185

Query: 101 --EVRSVKR-SLLMEALER----------ELPSGTIRYSSKVVSVEESGLFKLVNLADGA 147
              +++      ++E L++               +     ++ S++     +L  L    
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSK 241

Query: 148 VFKTKVLIGCDGV-NSVVAKWLGFKKPAFAGRSDI------RGCTDFKLRHGLEPKFQQF 200
            ++  +L+    V N+           AF     I      +  TDF             
Sbjct: 242 PYENCLLV-LLNVQNAKAWN-------AFNLSCKILLTTRFKQVTDF----LSAATTTHI 289

Query: 201 LGKGFRYGFLPCNDQTVYWFFNW--CPSNQDKE--LEGNPDKTKQFVLS----KCHDLP- 251
                     P  D+       +  C         L  NP       LS       D   
Sbjct: 290 SLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRDGLA 342

Query: 252 ----------EQVKAIVENTPLDSILVSPLRYRY------------PWEVL---WGNISK 286
                     +++  I+E++ L+ +  +  R  +            P  +L   W ++ K
Sbjct: 343 TWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 287 GNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPS--------GVTKDKAG 338
                                    +  +++ +    +  EK           +  +   
Sbjct: 402 S------------------------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 339 EDKEEFKRNEIGLKRYATERRWRSCELISMA---YI---VGY-------DGKI------- 378
           + + E+  +   +  Y   + + S +LI      Y    +G+         ++       
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 379 --INFLRDKI 386
               FL  KI
Sbjct: 498 LDFRFLEQKI 507

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRAL 56
          M+    + I+GAG AG+  ++ L   GI  +++   E   V       + +  ++ 
Sbjct: 2  MQH-HKVAIIGAGAAGIGMAITLKDFGITDVIIL--EKGTVGHS----FKHWPKST 50

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 22/87 (25%)

Query: 1  MEEDE-DIVIVGAGIAGLTTSLALHRL------GIRSLVLESSE-------SLRVTGFAI 46
          M + +  +VI+G GI GL  +  + +        +   ++E+S        +++  G+ I
Sbjct: 1  MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYII 60

Query: 47 --------TLWTNAWRALDAVGISDSL 65
                      +A + +  +G+   L
Sbjct: 61 ERGPDSFLERKKSAPQLVKDLGLEHLL 87

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 17/77 (22%)

Query: 6  DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSE-------SLRVTGFAI-----TLWTN 51
           +VIVG GI GL  +    R    +   +LE+ E       + R  GF I     +    
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR 65

Query: 52 ---AWRALDAVGISDSL 65
                 ++A+G+ + L
Sbjct: 66 KHILTDLIEAIGLGEKL 82

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG 43
          D++++G G  GLT +  L   G ++L+LE+ +  R+ G
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGG 76

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
          M E  D+V+VG G  GL T+  +   G R LVLE   
Sbjct: 1  MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 61/203 (30%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL----RVTGFAITLWTNAWRALD 57
            E   +++VGAG AG   SLA  + G   ++++ +        ++   +       +   
Sbjct: 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQT-- 176

Query: 58  AVGISDSLRQQHIQ-------------LQGMVVASSVSCQPASE------ISFKTKGNRG 98
           A G+ D   +  I+             L  ++   S       +       +       G
Sbjct: 177 AHGVEDK-VEWFIEDAMKGGRQQNDIKLVTILAEQSA---DGVQWLESLGANLDDLKRSG 232

Query: 99  GHEVRSVKRSL-----------LMEALERELPS--GTIRYSSKVVSVEESGLFKLVNLAD 145
           G     V R+            +++ L +         R +S+VV        KLV   D
Sbjct: 233 GA---RVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVV--------KLVVNDD 281

Query: 146 GAV--------FKTKVLIGCDGV 160
            +V             +IG   V
Sbjct: 282 HSVVGAVVHGKHTGYYMIGAKSV 304

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGF 44
            V+VGAG+ GL     L R G   +VLE S  +  R T  
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNL 42

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           + I+IVGAGIAGL     L R G    +LE++ + RV G    + T  + A        +
Sbjct: 45  KRILIVGAGIAGLVAGDLLTRAGHDVTILEAN-ANRVGG---RIKT--FHAKKGEPSPFA 98

Query: 65  LRQQHIQLQGM 75
              Q+ +   M
Sbjct: 99  DPAQYAEAGAM 109

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESLRV 41
           +++VGAG++G++ +  L   GI   L+LE+++   +
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLILEATD--HI 40

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
          M   + +V++G+G+ GL+++L L R G    +L 
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILA 36

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
           ++E  D+VI+G+G AGL  +++    G + ++LE
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
          D +IVG+G+ G   +  L +L  + LV+E   
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 43.8 bits (102), Expect = 8e-05
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW 53
            ++   ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T     +
Sbjct: 275 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNY 325

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-----SLRVTGFAITLWT-NAWRALDAV 59
           D+V+ G GIAG+  S+   R G   LVLE +      +    GF   ++         A 
Sbjct: 43  DVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGF---IYLGGGTPLQKAC 99

Query: 60  GISDS 64
           G  DS
Sbjct: 100 GFDDS 104

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRS-LVLE 34
          + +   ++IVGAG  G +T+L L R G  +  VL+
Sbjct: 3  VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLD 37

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
           I+IVGAG +G      L   G +  +++
Sbjct: 5  KILIVGAGFSGAVIGRQLAEKGHQVHIID 33

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 2   EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
            +  D+V+VG+G AG + +++    G + +++E
Sbjct: 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIE 156

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
            +  D +IVGAG AG   +  L   G R L+++   
Sbjct: 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESLRVTG 43
           ++I+GAGIAGL  +  LH+ GI+  LVLE+ +  RV G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 6  DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESL 39
           +V++G GI+GL  S  L R     + +++ESSE L
Sbjct: 4  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW 53
            ++   ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T     +
Sbjct: 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNY 154

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
          M+E+ D++++G G+     S  +   G + L ++ + 
Sbjct: 3  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP 39

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
          D++I+G+G  G        R G+  L+ +
Sbjct: 4  DLIIIGSGSVGAAAGYYATRAGLNVLMTD 32

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 6  DIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESL 39
          D++++GAG  GL  +  L+++ G   ++++S+E+ 
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35
          M+   D+VIVG+G  G T +  L   G +  + + 
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 77

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 3  EDEDIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESL 39
              IVI+GAG  GL  ++ L  LG ++  + E +++ 
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1  MEEDEDIVIVGAGIAGLTTS-LALHRLGIRSLVLE 34
          M    D+ +VG+G  GLT +     +L  R LVLE
Sbjct: 4  MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLES 35
          D  ++GAG AGL  SL L R   +  + ++
Sbjct: 8  DCAVIGAGPAGLNASLVLGRARKQIALFDN 37

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
          M  D D +++GAG+ GL  + AL   G   LV E
Sbjct: 1  MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAE 34

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALD 57
          EE  DIV++GAG  G   +  L +L  G   L++E        G A  L    W A D
Sbjct: 34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEG-ATILAPGVWTAQD 90

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38
          D++I+G   AGL+ +L L R     L++++ E 
Sbjct: 4  DVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.97
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.97
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.97
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.91
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.86
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.69
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.68
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.67
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.67
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.65
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.65
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.65
3dme_A	369	Conserved exported protein; structural genomics, P	99.64
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.63
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.63
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.62
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.6
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.59
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.57
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.54
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.53
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.53
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.52
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.5
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.48
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.45
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.45
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.45
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.45
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.44
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.44
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.42
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.42
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.41
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.41
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.4
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.39
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.39
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.38
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.38
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.37
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.37
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.36
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.36
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.36
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.36
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.33
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.33
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.31
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.29
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.29
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.28
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.27
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.26
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.26
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.26
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.25
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.25
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.25
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.25
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.25
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.24
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.23
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.23
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.23
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.21
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.21
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.2
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.2
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.19
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.19
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.19
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.18
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.16
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.13
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.12
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.05
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.03
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.02
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.01
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.01
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.01
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.98
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.96
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.96
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.96
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.95
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.93
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.92
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.92
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.91
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.91
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.91
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.85
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.83
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.83
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.83
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.82
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.82
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.8
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.79
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.79
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.78
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.78
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.77
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.77
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.76
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.75
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.75
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.74
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.74
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.73
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.72
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.72
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.71
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.71
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.71
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.69
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.68
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.68
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.66
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.66
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.65
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.65
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.65
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.64
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.63
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.63
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.62
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.61
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.6
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.58
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.56
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.56
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.56
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.53
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.49
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.46
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.45
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.45
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.44
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.44
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.44
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.43
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.43
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.42
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.42
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.38
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.38
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.37
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.36
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.34
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.33
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.33
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.32
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.3
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.3
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.3
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.29
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.29
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.29
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.28
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.28
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.28
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.27
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.27
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.26
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.26
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.25
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.25
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.24
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.23
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.22
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.22
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.21
4dna_A	463	Probable glutathione reductase; structural genomic	98.21
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.2
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.2
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.17
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.16
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.16
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.15
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.14
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.14
4dna_A	463	Probable glutathione reductase; structural genomic	98.14
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.13
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.13
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.12
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.11
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.1
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.08
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.08
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.06
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.06
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.04
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.03
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.03
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.02
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.98
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.93
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.93
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.93
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.92
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.92
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.92
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.92
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.91
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.91
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.86
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.85
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.85
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.82
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.8
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.8
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.79
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.79
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.78
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.75
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.74
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.72
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.71
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.7
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.67
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.65
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.63
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.61
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.6
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.59
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.53
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.52
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.51
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.5
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.49
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.48
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.48
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.47
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.42
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.41
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.39
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.36
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.35
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.32
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.03
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.85
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.82
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.82
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.81
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.76
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.71
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.64
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.59
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.54
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.48
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.47
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.34
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.28
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.21
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.15
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.1
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.02
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.99
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.88
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.88
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.85
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.82
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.8
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.76
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.75
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.69
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.68
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.66
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.63
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.63
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.61
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.59
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.59
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.56
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.54
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.5
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.49
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.48
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.46
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.45
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.45
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.39
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.38
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.38
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.36
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.36
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.31
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.3
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.26
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.24
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.21
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.19
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.17
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.11
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.09
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.09
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.06
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.97
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.97
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.95
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.95
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.93
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.93
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.89
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.89
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.85
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.84
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.82
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.82
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.81
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.8
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.79
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.78
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.72
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.67
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.64
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.63
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.63
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.62
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.61
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.61
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.58
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.58
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.57
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.56
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.53
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.51
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.5
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.5
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.38
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.37
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.37
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.36
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.31
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.3
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.26
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.23
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.2
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.14
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.11
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.1
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.07
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.06
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.06
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.99
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.98
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.95
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.91
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.88
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.87
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.84
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.84
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.83
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.83
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.82
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.8
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.75
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	93.74
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.72
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.71
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.66
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.64
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.63
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.62
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.59
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.56
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.56
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.55
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.49
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.48
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.43
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.4
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.39
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.36
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.36
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.34
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.29
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.28
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.26
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.26
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.23
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.21
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.19
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.17
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.17
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.15
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.96
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	92.89
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	92.89
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.88
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.85
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.84
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.83
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.82
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.8
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.78
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.76
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	92.75
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.74
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.73
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.72
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.7
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.7
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.63
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.61
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.61
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.61
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.58
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.54
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.53
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.53
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.52
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.52
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.48
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.41
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.33
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	92.23
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	92.21
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.21
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.19
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.03
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.03
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	91.96
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.87
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	91.77
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.73
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.7
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	91.68
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.53
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.45
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.39
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.37
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.34
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	90.64
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.29
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	91.28
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.17
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	91.15
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	91.14
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	91.1
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	91.06
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.89

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=7.7e-49  Score=374.72  Aligned_cols=370  Identities=22%  Similarity=0.361  Sum_probs=292.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+...++++.+++++.++|+++|+++.+.+.+.+.....++....
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            46899999999999999999999999999999999888888999999999999999999999988888877777776543


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +.....+.........+...+.++|..|.+.|.+.+..++++++++|++++.++++++|++.+|++++||+||+|||.+|
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            44444443322111112344579999999999998866899999999999999999999999999999999999999999


Q ss_pred             HhHhHh-CCC-CCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHH
Q 015331          163 VVAKWL-GFK-KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK  240 (409)
Q Consensus       163 ~vr~~l-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (409)
                      .+|+.+ +.. .+.+.+..++.+.+..+........+..+++++.+++++|.++++..|++.+..+..   ...+++...
T Consensus       182 ~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~  258 (407)
T 3rp8_A          182 ALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAG---LAEDRDTLR  258 (407)
T ss_dssp             SSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---CSCCTTTHH
T ss_pred             HHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcC---CCCCchhHH
Confidence            999998 765 444566667676666554333344556677888889999999999888887764433   233455677


Q ss_pred             HHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHH
Q 015331          241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARC  320 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~  320 (409)
                      +.+.+.+..+.+.+.++++.........+......+.    .+|..+||+|+|||||.++|++|||+|+||+||..|++.
T Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~  334 (407)
T 3rp8_A          259 ADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPF----SRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAV  334 (407)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCC----SCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCC----CceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHH
Confidence            8899999999998888887664433211221111121    467789999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhhhhhh
Q 015331          321 IAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMM  396 (409)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~~~~~  396 (409)
                      |...                   . ..+++|+.|+++|++++..+++.+..++.    .++....+|+.+|.....+.+.
T Consensus       335 L~~~-------------------~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~  394 (407)
T 3rp8_A          335 FRQT-------------------R-DIAAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETGERII  394 (407)
T ss_dssp             HHSC-------------------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHSCCSHHHH
T ss_pred             HhcC-------------------C-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHhhccHHHHH
Confidence            9851                   1 57889999999999999999999988865    7888999999999977766666


Q ss_pred             hhh
Q 015331          397 KIL  399 (409)
Q Consensus       397 ~~~  399 (409)
                      +..
T Consensus       395 ~~~  397 (407)
T 3rp8_A          395 NGM  397 (407)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            554

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=2.5e-43  Score=337.10  Aligned_cols=347  Identities=20%  Similarity=0.230  Sum_probs=237.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC--cceeEEechhHHHHHHHcCCchHHHhhc---cccc-CeEEE
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV--TGFAITLWTNAWRALDAVGISDSLRQQH---IQLQ-GMVVA   78 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~~~-~~~~~   78 (409)
                      ++|+||||||+||++|+.|+++|++|+||||.+.+..  .|.++.++++++++|+++|+.+.+....   .... ...+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            5899999999999999999999999999999987754  3678889999999999999987665422   1111 11222


Q ss_pred             eccCCcccccc-ccc-ccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEE
Q 015331           79 SSVSCQPASEI-SFK-TKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLI  155 (409)
Q Consensus        79 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV  155 (409)
                      . ......... ... ............++|..|.+.|.+.++ ..++++++|++++..++ .++|++.||++++||+||
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~-~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvV  159 (412)
T 4hb9_A           82 N-ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLA-NTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLV  159 (412)
T ss_dssp             C-TTSCEEEC--------------CEEEEEHHHHHHHHHTTCT-TTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEE
T ss_pred             c-CCcceecccCCccccccccccccceEeeHHHHHHHHHhhcc-ceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEE
Confidence            1 111111000 000 011111233456899999999998874 57999999999987654 689999999999999999


Q ss_pred             EcCCCchHhHhHhCCCCCc-ccCceeEEEeeecCccCC------C-ccccceeec--CceEEE---EEec--------CC
Q 015331          156 GCDGVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHG------L-EPKFQQFLG--KGFRYG---FLPC--------ND  214 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~--~~~~~~---~~p~--------~~  214 (409)
                      +|||.+|.||+.++..... +.+...+.+.........      + ......+..  ++..+.   ..|.        ..
T Consensus       160 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T 4hb9_A          160 GADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMWRAPVNIHVEASLAE  239 (412)
T ss_dssp             ECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEEEEESCTTSCGGGCC
T ss_pred             ECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeeeecCCceeEEEeccC
Confidence            9999999999999765443 345555555443322100      0 000011111  111111   1111        11


Q ss_pred             --CeEEEEEEEcCCCC-CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEE
Q 015331          215 --QTVYWFFNWCPSNQ-DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCV  291 (409)
Q Consensus       215 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l  291 (409)
                        +...|......+.. ........+.+.+.+.+.+..|.+.+.++++.........+......+.    .+|..+||+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~grv~L  315 (412)
T 4hb9_A          240 IDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQSDMENISPLHLRSMPHL----LPWKSSTVTL  315 (412)
T ss_dssp             EEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTSCTTCCEEEEEEECCCC----CCCCCCSEEE
T ss_pred             CCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHhcccceeccchhcccccc----ccccccCEEE
Confidence              11223322222221 1223456677788888999999999999998876665544444433332    3678899999


Q ss_pred             eccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHH
Q 015331          292 AGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYI  371 (409)
Q Consensus       292 vGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~  371 (409)
                      +|||||.++|+.|||+|+||+||..|+++|.....+                .++++++|+.|+++|++++.++++.|..
T Consensus       316 iGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~----------------~~~~~~aL~~Ye~~R~~~~~~~~~~s~~  379 (412)
T 4hb9_A          316 LGDAIHNMTPMTGSGANTALRDALLLTQKLASVASG----------------HEELVKAISDYEQQMRAYANEIVGISLR  379 (412)
T ss_dssp             CTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTT----------------SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcC----------------CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998775                2467899999999999999999999876


Q ss_pred             hc
Q 015331          372 VG  373 (409)
Q Consensus       372 ~~  373 (409)
                      .+
T Consensus       380 ~~  381 (412)
T 4hb9_A          380 SA  381 (412)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=1.5e-41  Score=330.92  Aligned_cols=347  Identities=19%  Similarity=0.152  Sum_probs=244.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+++.+.+. .+.....+   
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~---   83 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHF---   83 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEE---
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccc---
Confidence            34678999999999999999999999999999999998877789999999999999999999887654 22211111   


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCC---EEecCEEE
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGA---VFKTKVLI  155 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~---~~~ad~vV  155 (409)
                       .+.   .+.+...... ....+.+++..+++.|.+.+.  +++++++++|++++.++++++|++.++.   ++++|+||
T Consensus        84 -~~~---~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vV  158 (500)
T 2qa1_A           84 -GGL---PIDFGVLEGA-WQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLV  158 (500)
T ss_dssp             -TTE---EEEGGGSTTG-GGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEE
T ss_pred             -cce---ecccccCCCC-CCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEE
Confidence             111   1111111111 112357889999999988663  6899999999999999999999988875   79999999


Q ss_pred             EcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCC-CCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ-DKELE  233 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~  233 (409)
                      +|||.+|.+|+.+|+..+.. .....+.+.+..+.  . ...+..++.++.+++++|.+++.+.+.+....... .....
T Consensus       159 gADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~  235 (500)
T 2qa1_A          159 GCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE--L-QPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETP  235 (500)
T ss_dssp             ECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC--C-CCEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----C
T ss_pred             ECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC--C-CCceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCC
Confidence            99999999999998876543 23334444443332  1 11233445666778899999987655554432211 11133


Q ss_pred             CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      .+++++.+.+.+.+.....       .........++..     ....++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus       236 ~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~-----~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~D  303 (500)
T 2qa1_A          236 PSWHEVADAWKRLTGDDIA-------HAEPVWVSAFGNA-----TRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQD  303 (500)
T ss_dssp             CCHHHHHHHHHHHHSCCCT-------TSEEEEEEEEECC-----EEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCC-------ccceeEEEEeccC-----cEEccccccCCEEEEEccccCCCCccccchhhhHHH
Confidence            4566666666555431100       0000111112211     123457778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFS  388 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~  388 (409)
                      |..|++.|...+.+.                 ..+++|+.|+++|++++.+++..+..+..   ..+....+|+.++.
T Consensus       304 A~~La~~La~~~~g~-----------------~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~R~~~~~  364 (500)
T 2qa1_A          304 AVNLGWKLGAVVNGT-----------------ATEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPLRDVLTE  364 (500)
T ss_dssp             HHHHHHHHHHHHTTS-----------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            999999999988653                 45789999999999999999998866654   44555667776554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=2.1e-41  Score=329.85  Aligned_cols=346  Identities=18%  Similarity=0.125  Sum_probs=246.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+++.+.+. .+.....+    .
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~----~   85 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGHF----G   85 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEEE----T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-ccccccee----c
Confidence            468999999999999999999999999999999998887889999999999999999999887654 22211111    1


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCC---EEecCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGA---VFKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~---~~~ad~vV~A  157 (409)
                      +.   .+.+...... ....+.+++..+++.|.+.+.  +++++++++|++++.++++++|++.++.   +++||+||+|
T Consensus        86 ~~---~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgA  161 (499)
T 2qa2_A           86 GR---PVDFGVLEGA-HYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGC  161 (499)
T ss_dssp             TE---EEEGGGSTTC-CCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ce---ecccccCCCC-CCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEc
Confidence            11   1122111111 112357899999999988663  6899999999999999888999988875   7999999999


Q ss_pred             CCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCC-CCCCCCCC
Q 015331          158 DGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSN-QDKELEGN  235 (409)
Q Consensus       158 dG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~  235 (409)
                      ||.+|.+|+.+|+..+.. .....+.+.+..+..   ...+..++.++.+++++|.+++.+.+.+...... .......+
T Consensus       162 DG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~  238 (499)
T 2qa2_A          162 DGGRSTVRKAAGFDFPGTSASREMFLADIRGCEI---TPRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPP  238 (499)
T ss_dssp             CCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCC---CCEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCC
T ss_pred             cCcccHHHHHcCCCCCCCCCccEEEEEEEEECCC---CcceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCC
Confidence            999999999998876543 233344444443321   1123345566677889999988765555443222 11223455


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                      ++++.+.+.+.+.....       .........++..     ....++|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus       239 ~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~-----~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~  306 (499)
T 2qa2_A          239 YQEVAAAWQRLTGQDIS-------HGEPVWVSAFGDP-----ARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSV  306 (499)
T ss_dssp             HHHHHHHHHHHHSCCCT-------TCEEEEEEEECCC-----EEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCC-------ccceeEEEEEeCC-----cEEcccccCCCEEEEecccccCCCccccchhhhHHHHH
Confidence            66666666655431100       0000111122221     12345778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHHH
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFSV  389 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~~  389 (409)
                      .|++.|...+.+.                 ..+++|+.|+++|++++..++..+..+..   ..+....+|+.++..
T Consensus       307 ~La~~La~~l~g~-----------------~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~R~~~~~~  366 (499)
T 2qa2_A          307 NLGWKLAAVVSGR-----------------APAGLLDTYHEERHPVGRRLLMNTQAQGMLFLSGDEMQPLRDVLSEL  366 (499)
T ss_dssp             HHHHHHHHHHTTS-----------------SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence            9999999988652                 45689999999999999999998876654   445556677766543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=7.5e-41  Score=318.36  Aligned_cols=341  Identities=19%  Similarity=0.169  Sum_probs=243.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC--cceeEEech-hHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV--TGFAITLWT-NAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      +++||+||||||+|+++|+.|+++|++|+|||+.+.+..  .+.++.+.+ .+.++|+++|+++.+.....+... .++.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~  103 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIAD  103 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEEC
Confidence            568999999999999999999999999999999876543  455666654 568999999999998776655444 3332


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                       ..+........+...   ......++|..|.+.|.+.++++.++++++|++++.+++.++|++.+|++++||+||+|||
T Consensus       104 -~~g~~~~~~~~~~~~---~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG  179 (398)
T 2xdo_A          104 -EKGNILSTKNVKPEN---RFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANG  179 (398)
T ss_dssp             -SSSEEEEECCCGGGT---TSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSC
T ss_pred             -CCCCchhhccccccC---CCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCC
Confidence             233222111001111   1122368999999999999877899999999999998888999999998899999999999


Q ss_pred             CchHhHhHhCCCCCcccCceeEEEeeecCc-cCC-----CccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCC--
Q 015331          160 VNSVVAKWLGFKKPAFAGRSDIRGCTDFKL-RHG-----LEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKE--  231 (409)
Q Consensus       160 ~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--  231 (409)
                      .+|.+|+.++...+.+.+..++.+.+.... ..+     .......+++++..+.++|.+++...|++.+..+.....  
T Consensus       180 ~~S~vR~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  259 (398)
T 2xdo_A          180 GMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT  259 (398)
T ss_dssp             TTCSCCTTTCCCCCEEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEEEECCTTC---C
T ss_pred             cchhHHhhccCCCceEcceEEEEEEeCchhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEEEecCccccccc
Confidence            999999998765555555555555433111 000     011122334566666778998888777776644322110  


Q ss_pred             --CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCC-C--cEEEeccCCCCCCCCCcch
Q 015331          232 --LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISK-G--NVCVAGDAFHPMTPDIGQG  306 (409)
Q Consensus       232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~v~lvGDAA~~~~P~~G~G  306 (409)
                        ...+++...+.+.+.+..+.+.+.++++..  ..+..+++...+..    .+|.. +  ||+|+|||||.++|+.|||
T Consensus       260 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~rv~LiGDAAh~~~P~~GqG  333 (398)
T 2xdo_A          260 QVDFQNRNSVVDFLLKEFSDWDERYKELIHTT--LSFVGLATRIFPLE----KPWKSKRPLPITMIGDAAHLMPPFAGQG  333 (398)
T ss_dssp             CSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHC--SCCEEEEEEECCCC----SCCCSCCSSCEEECTHHHHCCCCTTSCS
T ss_pred             ccCcCCHHHHHHHHHHHHcCCChHHHHHHhCc--ccceeeeeEeccCC----CCcccCCCccEEEEeehhccCCCccCcc
Confidence              123566777888888888888888888752  22222222221111    13433 5  8999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhch-HHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331          307 GCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR-NEIGLKRYATERRWRSCELISMAYIVG  373 (409)
Q Consensus       307 ~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~y~~~r~~~~~~~~~~s~~~~  373 (409)
                      +|+||+||..|++.|...  .                 .+ .+++|+.|+++|++++..++..+....
T Consensus       334 ~n~ai~Da~~La~~L~~~--~-----------------~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~  382 (398)
T 2xdo_A          334 VNSGLVDALILSDNLADG--K-----------------FNSIEEAVKNYEQQMFIYGKEAQEESTQNE  382 (398)
T ss_dssp             HHHHHHHHHHHHHHHHSC--C-----------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc--c-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999873  1                 13 689999999999999999988875443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.1e-42  Score=326.18  Aligned_cols=354  Identities=17%  Similarity=0.165  Sum_probs=252.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+...+++..+++.+.+.|+++|+++.+.....+.....++.. ++
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~g   84 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH-DG   84 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE-TT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC-CC
Confidence            47999999999999999999999999999999988777788999999999999999999988876666666665543 22


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeE--EEEEcCCCEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFK--LVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~--~v~~~~g~~~~ad~vV~Ad  158 (409)
                      .....+......  .....+.++|..|.+.|.+.+.   +++++++++|++++.+++++  .|++.+|+++++|+||+||
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad  162 (399)
T 2x3n_A           85 ELLRYFNYSSVD--ARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD  162 (399)
T ss_dssp             EEEEEEETTSSC--GGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred             CEEEecchHHhc--ccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence            222222221111  1122357899999999998764   57999999999999988888  8999999899999999999


Q ss_pred             CCchHhHhHhCCCCC-c--ccCc--eeEEEeeecCccCCCccccceeecC-ceEEEEEecCCCeEEEEEEEcCCCCCC-C
Q 015331          159 GVNSVVAKWLGFKKP-A--FAGR--SDIRGCTDFKLRHGLEPKFQQFLGK-GFRYGFLPCNDQTVYWFFNWCPSNQDK-E  231 (409)
Q Consensus       159 G~~s~vr~~lg~~~~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~-~  231 (409)
                      |.+|.+|+.++.... .  +.+.  .++.+.+..+.  +..  . .++.+ +.+++++|.+++.+.|.+.+..+.... .
T Consensus       163 G~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  237 (399)
T 2x3n_A          163 GIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVA--ERN--R-LYVDSQGGLAYFYPIGFDRARLVVSFPREEARELM  237 (399)
T ss_dssp             CTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHH--HCE--E-EEECTTSCEEEEEEETTTEEEEEEECCHHHHHHHH
T ss_pred             CCChHHHHHhCCCccccCCCCCCceEEEEEEecCCC--CCc--c-EEEcCCCcEEEEEEcCCCEEEEEEEeCcccccccc
Confidence            999999999987643 2  4455  55554443221  111  2 45566 677899999998887776543221000 0


Q ss_pred             CCCChhHHHHHHHHHhcCCCHHHH-HHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          232 LEGNPDKTKQFVLSKCHDLPEQVK-AIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                      ...+.    +.+.+.+..+.+.+. ..++.........+++...    ....+|..+||+|+|||||.++|++|||+|+|
T Consensus       238 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~a  309 (399)
T 2x3n_A          238 ADTRG----ESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGY----LNLDRYWADNVAMLGDAIHNVHPITGQGMNLA  309 (399)
T ss_dssp             HSTTS----HHHHHHHHTTCCGGGHHHHHTCCCSTTCEECCCCC----EECSCSEETTEEECGGGTEECCGGGCCHHHHH
T ss_pred             ccCCH----HHHHHHHhhcCCcchhhHHhcCCccceEEechhhc----ccccccccCcEEEEechhccCCCcccccHHHH
Confidence            01223    334445556666552 3334332112233444331    12336778999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI  386 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~  386 (409)
                      ++||..|++.|...++..                .+.+++|+.|+++|++++..++..+..+..    .+++...+ +.+
T Consensus       310 l~da~~La~~L~~~~~~~----------------~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~  372 (399)
T 2x3n_A          310 IEDASALADALDLALRDA----------------CALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVF-DTA  372 (399)
T ss_dssp             HHHHHHHHHHHHHHHTTS----------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HC-
T ss_pred             HHHHHHHHHHHHhhhccc----------------chHHHHHHHHHHHhccHHHHHHHHHHHhhhhhcccCchHHHH-HHH
Confidence            999999999999976531                256899999999999999999999977754    55666677 777


Q ss_pred             HHHH
Q 015331          387 FSVL  390 (409)
Q Consensus       387 ~~~~  390 (409)
                      |+.+
T Consensus       373 ~~~~  376 (399)
T 2x3n_A          373 LQGS  376 (399)
T ss_dssp             ----
T ss_pred             Hhhh
Confidence            7643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=8.4e-41  Score=317.92  Aligned_cols=334  Identities=19%  Similarity=0.212  Sum_probs=235.5

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+ .++||+||||||+|+++|+.|+++|++|+|||+.+.+ ...++++.+++++.++|+++|+.+  .....+.....++
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~   78 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYV   78 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEE
Confidence            43 4689999999999999999999999999999998875 445788899999999999999987  3444555555554


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ...++........         ....+.+..+.+.|.+.+++++++++++|++++.+++.++|++.+|+++++|+||+||
T Consensus        79 ~~~~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  149 (397)
T 2vou_A           79 DALTGERVGSVPA---------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGAD  149 (397)
T ss_dssp             ETTTCCEEEEEEC---------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECC
T ss_pred             ecCCCCccccccC---------cccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECC
Confidence            4313322221111         1124678899999998888899999999999999988999999999999999999999


Q ss_pred             CCchHhHhHhCCCC-CcccCceeEEEeeecCccCC-----CccccceeecCceEEEEEecCCC------eEEEEEEEcCC
Q 015331          159 GVNSVVAKWLGFKK-PAFAGRSDIRGCTDFKLRHG-----LEPKFQQFLGKGFRYGFLPCNDQ------TVYWFFNWCPS  226 (409)
Q Consensus       159 G~~s~vr~~lg~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~  226 (409)
                      |.+|.+|+.++ .. +.+.+..++.+.+.......     ....+..+.+++..+.++|++++      ...|.+....+
T Consensus       150 G~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  228 (397)
T 2vou_A          150 GGASVVRKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVA  228 (397)
T ss_dssp             CTTCHHHHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECC
T ss_pred             CcchhHHHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecCCCEEEEEECCCCCCccceeEEEEEEecCC
Confidence            99999999998 43 23344455555543211100     01123334567667777887653      44454444322


Q ss_pred             CCC--CCC--C-------------CChhHHHHHHHHHhc-CCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCc
Q 015331          227 NQD--KEL--E-------------GNPDKTKQFVLSKCH-DLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGN  288 (409)
Q Consensus       227 ~~~--~~~--~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (409)
                      ...  ...  .             ...+...+.+.+.+. .+++ +.++++.....  ..+++...     ..++|..+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-----~~~~~~~gr  300 (397)
T 2vou_A          229 EGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLNASSP--FVTVVADA-----TVDRMVHGR  300 (397)
T ss_dssp             TTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH-HHHHHHHCSSC--EEEEEEEB-----CCSCSEETT
T ss_pred             CccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH-HHHHHhccCCc--ceeeeeee-----cCCceecCc
Confidence            210  000  0             002223344555543 5667 77777654321  13333322     223677899


Q ss_pred             EEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331          289 VCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM  368 (409)
Q Consensus       289 v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~  368 (409)
                      |+|+|||||.++|+.|||+|+||+||..|++.|..   .                 .+.+++|++|+++|++++..++..
T Consensus       301 v~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~-----------------~~~~~~L~~Ye~~R~~~~~~~~~~  360 (397)
T 2vou_A          301 VLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---N-----------------HDLRGSLQSWETRQLQQGHAYLNK  360 (397)
T ss_dssp             EEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---C-----------------SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---C-----------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999985   2                 256899999999999999999999


Q ss_pred             hHHhcc
Q 015331          369 AYIVGY  374 (409)
Q Consensus       369 s~~~~~  374 (409)
                      |..++.
T Consensus       361 s~~~~~  366 (397)
T 2vou_A          361 VKKMAS  366 (397)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            866654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=4.3e-41  Score=331.74  Aligned_cols=350  Identities=19%  Similarity=0.104  Sum_probs=240.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+||++|+.|+++|++|+|||+.+.+...+++..+++.++++|+++|+++.+.+......... +   .+
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~-~---~~  124 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLP-F---AG  124 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCC-B---TT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCce-e---CC
Confidence            5799999999999999999999999999999999888888999999999999999999998877655433210 1   11


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEE--cCC-CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNL--ADG-AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~--~~g-~~~~ad~vV~Ad  158 (409)
                      .....+.+...... ....+.+++..+.+.|.+.+.  +++|+++++|++++.+++.++|++  .+| .+++||+||+||
T Consensus       125 ~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          125 IFTQGLDFGLVDTR-HPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCD  203 (570)
T ss_dssp             BCTTCCBGGGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECS
T ss_pred             cccccccccccCCC-CCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcC
Confidence            11112222222111 122457899999999988763  689999999999999988888888  677 689999999999


Q ss_pred             CCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEE-EecCCCeE-EEEEEEcCCC-CCCCCCC
Q 015331          159 GVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGF-LPCNDQTV-YWFFNWCPSN-QDKELEG  234 (409)
Q Consensus       159 G~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~-~~~~~~~~~~-~~~~~~~  234 (409)
                      |.+|.+|+.+|+..+.. +....+...+......   ..+...+.+..++++ +|.+++.. .+++...... .......
T Consensus       204 G~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~  280 (570)
T 3fmw_A          204 GGRSTVRRLAADRFPGTEATVRALIGYVTTPERE---VPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPV  280 (570)
T ss_dssp             CSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS---SCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCC
T ss_pred             CCCchHHHHcCCCCccceeeeEEEEEEEEecCCC---cceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCC
Confidence            99999999998876544 3334444433333222   112222333344555 79988865 4555443322 1112334


Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHcCCCC-ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331          235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLD-SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED  313 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d  313 (409)
                      +.++    +.+.+......   .+...... ....+++..     ...++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus       281 ~~~~----~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~D  348 (570)
T 3fmw_A          281 TLED----LGAAVARVRGT---PLTLTEPVSWLSRFGDAS-----RQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQD  348 (570)
T ss_dssp             CHHH----HHHHTTSSSSC---CCCCCSCCEEEEEECCCC-----EECSCSEETTEEECGGGTEECCCCSSCHHHHHHHH
T ss_pred             CHHH----HHHHHHHHhhc---ccccceeeeeeEEeeccc-----ccccccccCCEEEEEecceecCCCcCcCHhHHHHH
Confidence            4443    44444332221   01111112 222333322     23457788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhH-HHHHHHHHHHH
Q 015331          314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKI-INFLRDKIFSV  389 (409)
Q Consensus       314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~-~~~~r~~~~~~  389 (409)
                      |..|++.|..++++.                 ..+++|+.|+++|++++..++..+..+..   ..+. ...+|+.++..
T Consensus       349 A~~La~~La~~~~g~-----------------~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~lR~~~~~l  411 (570)
T 3fmw_A          349 AVNLGWKLAARVRGW-----------------GSEELLDTYHDERHPVAERVLLNTRAQLALMRPDEQHTTPLRGFVEEL  411 (570)
T ss_dssp             HHHHHHHHHHHHHSC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            999999999987653                 56789999999999999999999976654   3333 88899988875


Q ss_pred             H
Q 015331          390 L  390 (409)
Q Consensus       390 ~  390 (409)
                      +
T Consensus       412 ~  412 (570)
T 3fmw_A          412 L  412 (570)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=1.2e-40  Score=318.13  Aligned_cols=339  Identities=27%  Similarity=0.320  Sum_probs=234.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      |++++||+||||||+||++|+.|+++|++ |+|||+.+.+...++++.+++++.++|+++|+++.+...+.+.....++.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~   80 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID   80 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc
Confidence            77789999999999999999999999999 99999998887788999999999999999999999888777666655554


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---C-CeEEeCceEEEEEEeCCeEEEEEcC---C--CEEe
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---S-GTIRYSSKVVSVEESGLFKLVNLAD---G--AVFK  150 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~-~~i~~~~~v~~v~~~~~~~~v~~~~---g--~~~~  150 (409)
                      . .+........... .......+.++|..|.+.|.+.+.   + ++++++++|++++. +++++|++.+   |  .+++
T Consensus        81 ~-~g~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           81 Q-SGATVWSEPRGVE-AGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG  157 (410)
T ss_dssp             T-TSCEEEEEECGGG-GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred             C-CCCEEeeccCCcc-ccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence            3 2322211111100 011223457899999999988663   3 58999999999988 6678888765   6  4789


Q ss_pred             cCEEEEcCCCchHhHhHhCCCC--CcccCceeEEEeeecCccCCCccccceeec--CceEEEEEecCC-----C--eEEE
Q 015331          151 TKVLIGCDGVNSVVAKWLGFKK--PAFAGRSDIRGCTDFKLRHGLEPKFQQFLG--KGFRYGFLPCND-----Q--TVYW  219 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~-----~--~~~~  219 (409)
                      ||+||+|||.+|.+|+.++...  +.+.+...+.+....+..  .......+++  .+..++++|+++     +  .+.|
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w  235 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRF--LDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNW  235 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCC--TTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEE
T ss_pred             cCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccc--cCCCeEEEecCCCCcEEEEEecCCcccCCCCcEEEE
Confidence            9999999999999999996543  233344444444433211  1111222333  345678899863     3  3455


Q ss_pred             EEEEcCCC---CCCCCCCChhHHHHHHHHHhcCCCH---HHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEec
Q 015331          220 FFNWCPSN---QDKELEGNPDKTKQFVLSKCHDLPE---QVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAG  293 (409)
Q Consensus       220 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG  293 (409)
                      .+......   .............+.+.+.+..+..   .+.++++...  ....+++....+    .++|..+||+|+|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~----~~~~~~grv~LvG  309 (410)
T 3c96_A          236 VCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQ--LILQYPMVDRDP----LPHWGRGRITLLG  309 (410)
T ss_dssp             EEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHHHHTCS--EEEEEEEEECCC----CSCCCBTTEEECT
T ss_pred             EEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHHHhcCc--ccceeecccCCC----ccccccCCEEEEe
Confidence            55443210   0000011111123556666665543   2456665542  233344433222    2367789999999


Q ss_pred             cCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhH
Q 015331          294 DAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAY  370 (409)
Q Consensus       294 DAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~  370 (409)
                      ||||.++|++|||+|+||+||..|++.|...                    ...+++|++|+++|++++..++..++
T Consensus       310 DAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--------------------~~~~~~L~~Ye~~r~~~~~~~~~~s~  366 (410)
T 3c96_A          310 DAAHLMYPMGANGASQAILDGIELAAALARN--------------------ADVAAALREYEEARRPTANKIILANR  366 (410)
T ss_dssp             HHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC--------------------SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccchhHHHHHHHHHHHHHHHhcc--------------------CCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999872                    15688999999999999999998875

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=5e-40  Score=324.25  Aligned_cols=344  Identities=22%  Similarity=0.243  Sum_probs=240.9

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCe---E
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGM---V   76 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~---~   76 (409)
                      |+ .++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+++.+.+.+.+....   .
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCE
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCccccccee
Confidence            54 4689999999999999999999999999999999988778889999999999999999999998877655433   1


Q ss_pred             --EEeccCCcccccc--cccc----cCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC----eEEEE
Q 015331           77 --VASSVSCQPASEI--SFKT----KGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL----FKLVN  142 (409)
Q Consensus        77 --~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~----~~~v~  142 (409)
                        ......+.....+  .+..    .....+.....+++..|.+.|.+.+.  +++++++++|++++.+++    +++++
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~  160 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTAR  160 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEE
T ss_pred             eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEE
Confidence              2222222222211  1110    01111333557899999999988663  689999999999999988    89998


Q ss_pred             EcCC---CEEecCEEEEcCCCchHhHhHhCCCCCcccCcee-EEEeeecCccC--CCcc-ccceeecCceEEEEEecCC-
Q 015331          143 LADG---AVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD-IRGCTDFKLRH--GLEP-KFQQFLGKGFRYGFLPCND-  214 (409)
Q Consensus       143 ~~~g---~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~-~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~p~~~-  214 (409)
                      +.++   .+++||+||+|||.+|.+|+.+|+.......... +...+......  .... .+..+..++...+++|..+ 
T Consensus       161 ~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~  240 (535)
T 3ihg_A          161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRP  240 (535)
T ss_dssp             EEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECSST
T ss_pred             EEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEECCCceEEEEEecCC
Confidence            8886   6899999999999999999999887554322211 11112211111  1111 1233445666677889886 


Q ss_pred             CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEecc
Q 015331          215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD  294 (409)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGD  294 (409)
                      +.+.+.+.+.++........+++.+.+.+.+.+......+       .......+++.     ....++|..+||+|+||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~-----~~~a~~~~~grv~LvGD  308 (535)
T 3ihg_A          241 DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKP-------ELVDIQGWEMA-----ARIAERWREGRVFLAGD  308 (535)
T ss_dssp             TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCC-------EEEEEEEEEEE-----EEEESCSEETTEEECTT
T ss_pred             CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCce-------eEEEeeEeeee-----EEEECccccCCEEEEec
Confidence            4444444444433222234456666666666553211110       01111222222     22345778899999999


Q ss_pred             CCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331          295 AFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG  373 (409)
Q Consensus       295 AA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~  373 (409)
                      |||.++|+.|||+|+||+||..|++.|..++++.                 ..+++|++|+++|++++..+++.|....
T Consensus       309 AAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~-----------------~~~~lL~~Ye~eR~p~a~~~~~~s~~~~  370 (535)
T 3ihg_A          309 AAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQ-----------------AGAGLLDTYEDERKVAAELVVAEALAIY  370 (535)
T ss_dssp             TTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTS-----------------SCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCccCCccccccccHHHHHHHHHHHhcCC-----------------CcHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999988653                 4567899999999999999999986554

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=8.5e-41  Score=316.01  Aligned_cols=324  Identities=23%  Similarity=0.283  Sum_probs=231.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+...++++.+++.+.+.|+++|+++.+...+.+.....++..  +
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH--N   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET--T
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC--C
Confidence            57999999999999999999999999999999988877789999999999999999999998887777777766654  3


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .....++..      ....+.++|..|.+.|.+.+.  +++++++++|++++. ++  +|++.+|+++++|+||+|||.+
T Consensus        89 ~~~~~~~~~------~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~  159 (379)
T 3alj_A           89 KSVSKETFN------GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVG  159 (379)
T ss_dssp             EEEEEECGG------GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTT
T ss_pred             ceeeeccCC------CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCcc
Confidence            332222221      122457899999999988663  689999999999987 33  7888889899999999999999


Q ss_pred             hHhHhHhCCCC-CcccCceeEEEeeecCc---cCCC-ccccce--eecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331          162 SVVAKWLGFKK-PAFAGRSDIRGCTDFKL---RHGL-EPKFQQ--FLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG  234 (409)
Q Consensus       162 s~vr~~lg~~~-~~~~~~~~~~~~~~~~~---~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |.+|+.++... +.+.+..++.+.+....   +... ......  +++++.+++++|.+++...|++.+..... .    
T Consensus       160 s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~----  234 (379)
T 3alj_A          160 SKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADP-R----  234 (379)
T ss_dssp             CHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECTTCT-T----
T ss_pred             HHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecCCCC-C----
Confidence            99999998642 22344555555554421   1111 112222  45677788999999998888877754211 0    


Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331          235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da  314 (409)
                       ++.+.+.+.+.....+ .+.++++.........+++....    ..++|..+||+|+|||||.++|++|||+|+|++||
T Consensus       235 -~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da  308 (379)
T 3alj_A          235 -GSSVPIDLEVWVEMFP-FLEPCLIEAAKLKTARYDKYETT----KLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNA  308 (379)
T ss_dssp             -TTCSSCCHHHHHHHCG-GGHHHHHHHHTCTTCCEEEEEEE----EESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCchhc-cHHHHHhhCCccceEEecccccC----CCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHH
Confidence             1222222222111111 11133332111111122222111    12366789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      ..|++.|...                    .+.+++|+.|+++|++++..++..+
T Consensus       309 ~~La~~L~~~--------------------~~~~~~l~~Y~~~r~~~~~~~~~~s  343 (379)
T 3alj_A          309 FSLSQDLEEG--------------------SSVEDALVAWETRIRPITDRCQALS  343 (379)
T ss_dssp             HHHHHHTTSS--------------------SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc--------------------cCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998651                    1568899999999999999999987

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.8e-39  Score=320.15  Aligned_cols=352  Identities=17%  Similarity=0.158  Sum_probs=240.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccC---eEEEec
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQG---MVVASS   80 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~---~~~~~~   80 (409)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+.+.+...   ..+...
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  105 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR  105 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence            47999999999999999999999999999999988877788999999999999999999998877665532   222222


Q ss_pred             cCCcccccccccccC-----CCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---C--CEEe
Q 015331           81 VSCQPASEISFKTKG-----NRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---G--AVFK  150 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~-----~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g--~~~~  150 (409)
                      ..+..+..+.+....     ...+.....+++..+++.|.+.+... ++++++|++++.+++++++++.+   |  .+++
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~  184 (549)
T 2r0c_A          106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRDDHVRATITDLRTGATRAVH  184 (549)
T ss_dssp             BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECSSCEEEEEEETTTCCEEEEE
T ss_pred             CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEE
Confidence            223222223322111     01223446789999999999887555 99999999999998888888766   6  3799


Q ss_pred             cCEEEEcCCCchHhHhHhCCCCCcccC-ceeEEEeeecCccC---CCccccc-eeecCc-eEEEEEecCCCeEEEEEEEc
Q 015331          151 TKVLIGCDGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRH---GLEPKFQ-QFLGKG-FRYGFLPCNDQTVYWFFNWC  224 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~p~~~~~~~~~~~~~  224 (409)
                      ||+||+|||.+|.+|+.+|+..+.... ...+...+..+...   .....+. .++.++ ..++++|.+++. .|.+.+.
T Consensus       185 a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~-~~~~~~~  263 (549)
T 2r0c_A          185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRG-LYRLTVG  263 (549)
T ss_dssp             EEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSS-EEEEEEE
T ss_pred             eCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCc-EEEEEec
Confidence            999999999999999999887654322 22333333332100   0011222 233444 567889987643 2333332


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCc
Q 015331          225 PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG  304 (409)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G  304 (409)
                      .+..   . .+++++.+.+.+.+.. ...       ........+++.     ....++|..+||+|+|||||.++|+.|
T Consensus       264 ~~~~---~-~~~~~~~~~l~~~~~~-~~~-------~~~~~~~~~~~~-----~~~a~~~~~grv~L~GDAAH~~~P~~G  326 (549)
T 2r0c_A          264 VDDA---S-KSTMDSFELVRRAVAF-DTE-------IEVLSDSEWHLT-----HRVADSFSAGRVFLTGDAAHTLSPSGG  326 (549)
T ss_dssp             CSTT---C-CSCCCHHHHHHHHBCS-CCC-------CEEEEEEEEEEC-----CEECSCSEETTEEECGGGTEECCCGGG
T ss_pred             CCCC---C-CCHHHHHHHHHHHhCC-CCc-------eeEEEEecchhH-----hhhHHhhcCCcEEEEccccccCCCccC
Confidence            2111   1 4455666666666542 100       000111122221     123456778999999999999999999


Q ss_pred             chhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---c------
Q 015331          305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---D------  375 (409)
Q Consensus       305 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~------  375 (409)
                      ||+|+||+||..|++.|...+++.                 ..+++|+.|+++|++++.++++.|..+..   .      
T Consensus       327 qG~n~gi~DA~~La~~La~~l~g~-----------------a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~~~~~~~  389 (549)
T 2r0c_A          327 FGMNTGIGSAADLGWKLAATLRGW-----------------AGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPG  389 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC-----------------SCTTTTHHHHHHHHHHHHHHHHC----------CCCCTT
T ss_pred             CccccccHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            999999999999999999987652                 34678999999999999999999877654   1      


Q ss_pred             ----hhHHHHHHHHHHHHHh
Q 015331          376 ----GKIINFLRDKIFSVLL  391 (409)
Q Consensus       376 ----~~~~~~~r~~~~~~~~  391 (409)
                          ++....+|+.+...+.
T Consensus       390 ~~~~~~~~~~~R~~~~~~~~  409 (549)
T 2r0c_A          390 LHDDGPRGERIRAAVAEKLE  409 (549)
T ss_dssp             TTCCSHHHHHHHHHHHHHHH
T ss_pred             ccccCcchHHHHHHHHHHHH
Confidence                4456677777766553

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=8.1e-40  Score=328.27  Aligned_cols=342  Identities=18%  Similarity=0.172  Sum_probs=237.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-----cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR-----LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~-----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      ++||+||||||+||++|+.|++     +|++|+||||.+.+...+++..++++++++|+++|+++.+.+.+.++..+.++
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~   87 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   87 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence            5799999999999999999999     99999999999888778899999999999999999999998877777777776


Q ss_pred             eccCCccccc-ccccccC-CCCCccccccCHHHHHHHHHhhCC-----CCeEEeCceEEEEEEeC--------CeEEEEE
Q 015331           79 SSVSCQPASE-ISFKTKG-NRGGHEVRSVKRSLLMEALERELP-----SGTIRYSSKVVSVEESG--------LFKLVNL  143 (409)
Q Consensus        79 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~-----~~~i~~~~~v~~v~~~~--------~~~~v~~  143 (409)
                      .......+.. ..+.... .........++|..+++.|.+.+.     +++++++++|++++.++        +.++|++
T Consensus        88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~  167 (665)
T 1pn0_A           88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL  167 (665)
T ss_dssp             EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEE
T ss_pred             eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEE
Confidence            5432111111 1111110 111233457999999999988763     27999999999998875        4577665


Q ss_pred             c------------------------------------------CC--CEEecCEEEEcCCCchHhHhHhCCCCCcccCce
Q 015331          144 A------------------------------------------DG--AVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRS  179 (409)
Q Consensus       144 ~------------------------------------------~g--~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~  179 (409)
                      .                                          +|  ++++||+||+|||.+|.||+.+|+.........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~~  247 (665)
T 1pn0_A          168 RYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDY  247 (665)
T ss_dssp             EECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEEE
T ss_pred             EecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCccE
Confidence            3                                          34  468999999999999999999988754333222


Q ss_pred             eEEEeeecCc--cCCC-ccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC----CCCCCChhHHHHHHHHHhcCCCH
Q 015331          180 DIRGCTDFKL--RHGL-EPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD----KELEGNPDKTKQFVLSKCHDLPE  252 (409)
Q Consensus       180 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  252 (409)
                      .+ ++.....  ..+. ...+.+...++..++++|.+++.+.+++.+......    .....+++++.+.+.+.+..+..
T Consensus       248 ~~-~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~~  326 (665)
T 1pn0_A          248 IW-GVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPYTF  326 (665)
T ss_dssp             EE-EEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHHHHTTSCC
T ss_pred             EE-EEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHHHhCcccC
Confidence            22 3332211  1111 111222222455688999999877777666543211    11334566666665555432111


Q ss_pred             HHHHHHHcCCCCceeeccccccCchhhhccccC-CCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCC
Q 015331          253 QVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS-KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSG  331 (409)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~  331 (409)
                      .+      .....+..+++.     ....++|. .+||+|+|||||.++|+.|||||+||+||..|++.|..++++.   
T Consensus       327 ~~------~~~~~~~~~~~~-----~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~---  392 (665)
T 1pn0_A          327 DV------QQLDWFTAYHIG-----QRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---  392 (665)
T ss_dssp             EE------EEEEEEEEEEEE-----EEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             ce------eeEEEEEeeecc-----ceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCC---
Confidence            00      000111111111     12345677 7999999999999999999999999999999999999988753   


Q ss_pred             cccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          332 VTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                                    ..+++|+.|+++|++++.+++..+.....
T Consensus       393 --------------a~~~lL~tYe~eR~p~a~~~i~~s~~~~~  421 (665)
T 1pn0_A          393 --------------AKRDILKTYEEERQPFAQALIDFDHQFSR  421 (665)
T ss_dssp             --------------BCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          45678999999999999999998866543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=1.7e-39  Score=308.79  Aligned_cols=354  Identities=18%  Similarity=0.187  Sum_probs=236.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+  ....++..+++++.++|+++|+++.+.+...+.....+... 
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~-   80 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA-   80 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET-
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEEC-
Confidence            479999999999999999999999999999998753  12233446899999999999999999887777766666543 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeC-CeEEEEE-cCCC--EEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESG-LFKLVNL-ADGA--VFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~-~~~~v~~-~~g~--~~~ad~vV  155 (409)
                      + . ...+.+....  .....+.+++..+.+.|.+.+  .+++++++++|++++.++ +.+.|++ .+|+  ++++|+||
T Consensus        81 ~-~-~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV  156 (394)
T 1k0i_A           81 G-Q-RRRIDLKRLS--GGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (394)
T ss_dssp             T-E-EEEECHHHHH--TSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             C-c-eEEecccccc--CCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence            1 1 1122222111  012344678888888887755  378999999999998763 5677887 6786  79999999


Q ss_pred             EcCCCchHhHhHhCCCCC-cccCc--eeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKP-AFAGR--SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++.... .+.+.  ..+.+......  +..........++.+.++.|.+++...|++.......  ..
T Consensus       157 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~  232 (394)
T 1k0i_A          157 GCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTP--PVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEK--VE  232 (394)
T ss_dssp             ECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSC--CSCSSCEEECCTTCCEEEEEEETTEEEEEEEECTTCC--GG
T ss_pred             ECCCCCcHHHHhcCccccccccccccceeEEEecCCC--CCccceEEEEcCCceEEEEecCCCcEEEEEEeCCCCC--cc
Confidence            999999999999876522 12222  22223222111  1111122222344455556666666667666544321  12


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE  312 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~  312 (409)
                      ..+++.+.+.+.+.+   .......+...........++..     ....+|..+||+|+|||||.++|+.|||+|+||+
T Consensus       233 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~  304 (394)
T 1k0i_A          233 DWSDERFWTELKARL---PSEVAEKLVTGPSLEKSIAPLRS-----FVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAAS  304 (394)
T ss_dssp             GCCHHHHHHHHHHTS---CHHHHHHCCCCCEEEEEEEEEEE-----EEEECSEETTEEECGGGTEECCGGGTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHhh---CcccccccccCcceeeEEEEhhh-----hhccccccCCEEEEechhhcCCCcccchHHHHHH
Confidence            234455555555543   33222122111110111122211     1234667899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-------chhHHHHHHHH
Q 015331          313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-------DGKIINFLRDK  385 (409)
Q Consensus       313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~r~~  385 (409)
                      ||..|++.|.....+                  ..+++|+.|+++|++++..+++.+...+.       .+++...+|+.
T Consensus       305 da~~La~~L~~~~~~------------------~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~  366 (394)
T 1k0i_A          305 DVSTLYRLLLKAYRE------------------GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQT  366 (394)
T ss_dssp             HHHHHHHHHHHHHHH------------------CCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHH
Confidence            999999999987542                  23468999999999999999888765432       35788889999


Q ss_pred             HHHHHhh
Q 015331          386 IFSVLLG  392 (409)
Q Consensus       386 ~~~~~~~  392 (409)
                      .|..+..
T Consensus       367 ~l~~~~~  373 (394)
T 1k0i_A          367 ELEYYLG  373 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhcC
Confidence            9886544

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=7.1e-39  Score=321.09  Aligned_cols=343  Identities=17%  Similarity=0.173  Sum_probs=232.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .++||+||||||+||++|+.|++ +|++|+||||.+.+...+++..++++++++|+++|+.+.+.+.+.+.....++...
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            35799999999999999999999 99999999999988888899999999999999999999988877776666665432


Q ss_pred             ---CCccccccccccc-CCCCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeCC----eEEEEEc-----
Q 015331           82 ---SCQPASEISFKTK-GNRGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESGL----FKLVNLA-----  144 (409)
Q Consensus        82 ---~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~~----~~~v~~~-----  144 (409)
                         .+.......+... ..........+++..+++.|.+.+.  ++  +++++++|++++.+++    .++|++.     
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~  190 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA  190 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence               1211110011110 1111223457899999999988663  34  8999999999998763    5777765     


Q ss_pred             -CC--CEEecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecC--ccCCCccccceeecCceEEEEEecCCC-eEE
Q 015331          145 -DG--AVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFK--LRHGLEPKFQQFLGKGFRYGFLPCNDQ-TVY  218 (409)
Q Consensus       145 -~g--~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~  218 (409)
                       +|  .+++||+||+|||.+|.+|+.+|+..........+ +.....  ...+.......+..++.+++++|.+++ .+.
T Consensus       191 ~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~r  269 (639)
T 2dkh_A          191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAW-GVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPREGGHLVR  269 (639)
T ss_dssp             GTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCE-EEEEEEEEECCTTTTSEEEEEETTEEEEEEECTTSSCEE
T ss_pred             CCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceE-EEEEEEEccCCCccceeEEEEcCCceEEEEEcCCCcEEE
Confidence             45  47899999999999999999998875433322222 222211  111100111112225566889999888 555


Q ss_pred             EEEEEcC--CCC-CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccC----------
Q 015331          219 WFFNWCP--SNQ-DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS----------  285 (409)
Q Consensus       219 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  285 (409)
                      +++.+..  +.. ......+++++.+.+.+.+..+...+      .....+..+++..     ...++|.          
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~a~~~~~~~~~~~~~~  338 (639)
T 2dkh_A          270 FYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEV------KNVPWWSVYEIGQ-----RICAKYDDVVDAVATPD  338 (639)
T ss_dssp             EEEECC-----------CCCHHHHHHHHHHHHTTSCEEE------EEEEEEEEECCCC-----EECSCSBSCCCSSCCTT
T ss_pred             EEEECCCcCcccccccCCCCHHHHHHHHHHHhCcccCcc------eeeeEEEeccccc-----chhhhhhcccccccccc
Confidence            5555433  111 11123455555555555443211100      0001111111111     1223444          


Q ss_pred             --CCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHH
Q 015331          286 --KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSC  363 (409)
Q Consensus       286 --~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~  363 (409)
                        .+||+|+|||||.++|+.|||+|+||+||..|++.|..++++.                 ..+++|+.|+++|++++.
T Consensus       339 ~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~-----------------a~~~lL~~Ye~eR~~~a~  401 (639)
T 2dkh_A          339 SPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQ-----------------CAPELLHTYSSERQVVAQ  401 (639)
T ss_dssp             SCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTS-----------------BCGGGGHHHHHHHHHHHH
T ss_pred             CccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHH
Confidence              7999999999999999999999999999999999999988752                 346789999999999999


Q ss_pred             HHHHHhHHhcc
Q 015331          364 ELISMAYIVGY  374 (409)
Q Consensus       364 ~~~~~s~~~~~  374 (409)
                      ++++.+.....
T Consensus       402 ~~~~~s~~~~~  412 (639)
T 2dkh_A          402 QLIDFDREWAK  412 (639)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHHHHH
Confidence            99999987765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=8.9e-37  Score=290.06  Aligned_cols=324  Identities=15%  Similarity=0.165  Sum_probs=211.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC-cceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV-TGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++|||+|||||||||++|+.|+++|++|+||||.+.+.. ..++..+++   ..++++++.........++.+..++.+.
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~   79 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSK---GILNEADIKADRSFIANEVKGARIYGPS   79 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEET---HHHHHTTCCCCTTTEEEEESEEEEECTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCH---HHHHHcCCCchhhhhhcccceEEEEeCC
Confidence            469999999999999999999999999999999887643 345666665   4677777765443344455566665543


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEE-E-cCC--CEEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVN-L-ADG--AVFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~-~-~~g--~~~~ad~vV  155 (409)
                      .... ......   .......+.++|..+.+.|.+.+.  +++++++++|+++..+++.+... . .++  .+++||+||
T Consensus        80 ~~~~-~~~~~~---~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vI  155 (397)
T 3oz2_A           80 EKRP-IILQSE---KAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVI  155 (397)
T ss_dssp             CSSC-EEEECS---SSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceE-eecccc---ccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEE
Confidence            3221 111111   112334567999999999988663  78999999999999888775432 2 233  268999999


Q ss_pred             EcCCCchHhHhHhCCCCCcccCceeEEE-eeecCccCCCccccc-ee---ecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPAFAGRSDIRG-CTDFKLRHGLEPKFQ-QF---LGKGFRYGFLPCNDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  230 (409)
                      +|||.+|.+|+.++.............. ....... ...+... .+   ..++.+.+++|.+++...+.+....+..  
T Consensus       156 gAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~--  232 (397)
T 3oz2_A          156 AADGFESEFGRWAGLKSVILARNDIISALQYRMINV-DVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWI--  232 (397)
T ss_dssp             ECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESC-CCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTS--
T ss_pred             eCCccccHHHHHcCCCcccccceeeeeeEEEEeecc-ccCcccceeeeeccCCCceEEEeecccceeEEEEeeccchh--
Confidence            9999999999999876543322221111 1111111 1122222 22   2456778899999987666555544322  


Q ss_pred             CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331          231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA  310 (409)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a  310 (409)
                         .......+.+.+.+.. .+.+.    ...........++.    ......+..+|++++|||||.++|++|||+|+|
T Consensus       233 ---~~~~~~~~~l~~~~~~-~~~l~----~~~~~~~~~~~~~~----~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A  300 (397)
T 3oz2_A          233 ---HNRFELKNYLDRFIEN-HPGLK----KGQDIQLVTGGVSV----SKVKMPITMPGLMLVGDAARLIDPITGGGIANA  300 (397)
T ss_dssp             ---CSHHHHHHHHHHHHHT-CHHHH----TSEEEEEEEEEEEC----CCCCSCCEETTEEECGGGGTCSCTTTCCCHHHH
T ss_pred             ---hhhhhHHHHHHHHHHh-Ccccc----ccceeeeeeccccc----cCcccceeeeeEEEcccccccCCCCcchhHHHH
Confidence               1233333433333322 22221    11111111122221    112235567899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHH
Q 015331          311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCE  364 (409)
Q Consensus       311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~  364 (409)
                      |+||..||+.|.+++..+                +..+++|++|++.++++...
T Consensus       301 ~~~g~~~A~~i~~~l~~~----------------~~~~~~L~~Ye~~~~~~~~~  338 (397)
T 3oz2_A          301 IVSGMYAAQVTKEAIESN----------------DYSPQMMQKYEKLIKERFER  338 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHT----------------CCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC----------------CccHHHHHHHHHHHHHHHHH
Confidence            999999999999988752                35678999999988876543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=1.5e-36  Score=297.39  Aligned_cols=345  Identities=14%  Similarity=0.115  Sum_probs=234.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHH-HHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWR-ALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+.. +.+..+.+.... +++.+|+++.+.....+......+.+..
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRH-QIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCC-CCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence            47999999999999999999999999999999875543 345666676554 8899999988877665554443333322


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe---EEEEEcCCC--EEecCEEE
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF---KLVNLADGA--VFKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~---~~v~~~~g~--~~~ad~vV  155 (409)
                      ......+.+...........+.++|..|.+.|.+.+  .+++++++++|+++..+++.   +++...+|+  +++||+||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI  165 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIV  165 (512)
T ss_dssp             CSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEE
T ss_pred             CccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEE
Confidence            211111222222122233456799999999998866  47899999999999998875   445556674  79999999


Q ss_pred             EcCCCchHhHhHhCCCCC-cccCceeEEEeeecCcc--CCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKP-AFAGRSDIRGCTDFKLR--HGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL  232 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  232 (409)
                      +|||.+|.+|+.++.... .+....++.+++.....  .+..........++.+++++|+.++...+.+.+..+.... .
T Consensus       166 ~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~-~  244 (512)
T 3e1t_A          166 DASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEA-I  244 (512)
T ss_dssp             ECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTT-T
T ss_pred             ECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhh-h
Confidence            999999999999976432 22344555555442211  1111222333445667899999999877776664332211 1


Q ss_pred             CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCC-ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLD-SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      ..+++   +.+.+.+ ...+.+.+.+...... ......+.....+.+...++..+|++++|||||+++|++|||+|+|+
T Consensus       245 ~~~~~---~~~~~~l-~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al  320 (512)
T 3e1t_A          245 KDGHE---AALLRYI-DRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLAT  320 (512)
T ss_dssp             SSCHH---HHHHHHH-HTSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHH
T ss_pred             cCCHH---HHHHHHH-HhCchHHHHHhcCccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHH
Confidence            22232   2233333 3556666666543211 11111222222222334567789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAY  370 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~  370 (409)
                      +||..|++.|...+.+                ....+.+|+.|+++|+++...+.++..
T Consensus       321 ~dA~~La~~L~~~l~~----------------~~~~~~aL~~Ye~~~~~~~~~~~~~~~  363 (512)
T 3e1t_A          321 YSALLVARAINTCLAG----------------EMSEQRCFEEFERRYRREYGNFYQFLV  363 (512)
T ss_dssp             HHHHHHHHHHHHHTTT----------------CSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC----------------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998765                236778999999999999988888763

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=1.2e-35  Score=293.36  Aligned_cols=346  Identities=16%  Similarity=0.098  Sum_probs=232.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|+++|++|+|||+.+.+.. +.+..+.+.+..+++.+|+++.+..............+
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence            34578999999999999999999999999999999876543 45788999999999999999888776544332222222


Q ss_pred             cCCcccccccccccCC--CCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe-CCeEEEEEc-CC--CEEecC
Q 015331           81 VSCQPASEISFKTKGN--RGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEES-GLFKLVNLA-DG--AVFKTK  152 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~-~~~~~v~~~-~g--~~~~ad  152 (409)
                      ........+.+.....  ......+.+++..+.+.|.+.+  .+++++++++|++++.+ ++.+.|++. +|  .+++||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~Ad  178 (591)
T 3i3l_A           99 GQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESD  178 (591)
T ss_dssp             SSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEES
T ss_pred             cCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcC
Confidence            2222111222221111  0122345789999999998766  47899999999999875 566788887 66  479999


Q ss_pred             EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCcc--CCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC
Q 015331          153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLR--HGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD  229 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  229 (409)
                      +||+|||.+|.+|+.++...... ....++...+.....  .+..........++.+++++|..++.+.+.+....+...
T Consensus       179 lVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~  258 (591)
T 3i3l_A          179 FVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSA  258 (591)
T ss_dssp             EEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEEEGGGHH
T ss_pred             EEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHh
Confidence            99999999999999998764322 222333333322111  112222233344666789999999876666555433211


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331          230 KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA  309 (409)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~  309 (409)
                      .....++    +.+.+.+....+.+.+.+.......    .......+.....++..++++++|||||+++|+.|||+|+
T Consensus       259 ~l~~~~~----~~~~~~l~~~~p~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinl  330 (591)
T 3i3l_A          259 EVREQGA----DAFYSSTLAKCAKAMDILGGAEQVD----EVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGVHL  330 (591)
T ss_dssp             HHHHHCH----HHHHHHHHTTCHHHHHHHTTCEECS----CCEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHHHH
T ss_pred             hhccCCH----HHHHHHHHHhCHHHHHHHhcCcccc----CceEecccccchhhcccCCEEEEccccccCCCcccccHHH
Confidence            0001112    2333333355566666665432110    0111111222334667899999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHH
Q 015331          310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYI  371 (409)
Q Consensus       310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~  371 (409)
                      |++||..|++.|...+.+                .+..+.+++.|++.++++...+.++...
T Consensus       331 Al~dA~~LA~~L~~~l~~----------------~~~~~~al~~Y~~~~~~~~~~i~~~~~~  376 (591)
T 3i3l_A          331 ASQSAVSAAAAIDRITRH----------------GDEKDAVHAWYNRTYREAYEQYHQFLAS  376 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHC----------------GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC----------------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998764                2456789999999999999888877633

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=4.5e-35  Score=280.81  Aligned_cols=313  Identities=16%  Similarity=0.219  Sum_probs=210.9

Q ss_pred             CCC-CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccccc-CeEEE
Q 015331            1 MEE-DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQ-GMVVA   78 (409)
Q Consensus         1 M~~-~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-~~~~~   78 (409)
                      |++ ++||+||||||+|+++|+.|+++|++|+|+|+.+.++. +.|..+.+.+...++++|+++.+.+.+.... +..+.
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~-~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   79 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF-VIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFV   79 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC-cccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEE
Confidence            543 48999999999999999999999999999999976553 5678889999999999999988877654433 33332


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeE--EEEEcCCC--EEecC
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFK--LVNLADGA--VFKTK  152 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~--~v~~~~g~--~~~ad  152 (409)
                      ..   .....+.+...........+.++|..+.+.|.+.+.  +++++++++|++++.+++.+  .|.+.+|+  +++||
T Consensus        80 ~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~  156 (421)
T 3nix_A           80 RG---KEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEAR  156 (421)
T ss_dssp             ET---TEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEE
T ss_pred             eC---CeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcC
Confidence            21   112233333222222334567999999999988663  78999999999999887765  45567787  69999


Q ss_pred             EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccC-CCc-cccceee---cCceEEEEEecCCCeEEEEEEEcCC
Q 015331          153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRH-GLE-PKFQQFL---GKGFRYGFLPCNDQTVYWFFNWCPS  226 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~  226 (409)
                      +||+|||.+|.+++.++...+.. ....++.......... ... .......   .++.+++++|.++++..+.+....+
T Consensus       157 ~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~  236 (421)
T 3nix_A          157 FIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPS  236 (421)
T ss_dssp             EEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHH
T ss_pred             EEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHH
Confidence            99999999999999998765433 3334444333322111 111 1112222   3566789999999987777665433


Q ss_pred             CCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCC-ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcc
Q 015331          227 NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLD-SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQ  305 (409)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~  305 (409)
                      .... ...++++..+.+.+    ..+.+.+.+...... .+...+.     ......++..++++++|||||+++|++|+
T Consensus       237 ~~~~-~~~~~~~~l~~~~~----~~p~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~lvGDAa~~~~P~~G~  306 (421)
T 3nix_A          237 YFDE-YTGTPEERMRAMIA----NEGHIAERFKSEEFLFEPRTIEG-----YAISASKLYGDGFVLTGNATEFLDPIFSS  306 (421)
T ss_dssp             HHTT-SCSCHHHHHHHHHH----TCTTTHHHHTTCCBSSCCEEEEC-----CCBEESCSEETTEEECGGGTCBCCSTTCC
T ss_pred             Hhhh-cCCCHHHHHHHHHH----hCcHHHHHHhcCccccCceeecc-----cceeeeeeccCCEEEecccccccCCcccc
Confidence            2211 12234333333332    334444555543221 1112211     11223356779999999999999999999


Q ss_pred             hhhhHhhHHHHHHHHHHHHhcC
Q 015331          306 GGCAALEDGIILARCIAEASTE  327 (409)
Q Consensus       306 G~~~al~da~~La~~l~~~~~~  327 (409)
                      |+++|++||..|++.|.+.+.+
T Consensus       307 G~~~A~~~a~~la~~l~~~~~~  328 (421)
T 3nix_A          307 GATFAMESGSKGGKLAVQFLKG  328 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.1e-35  Score=287.25  Aligned_cols=326  Identities=16%  Similarity=0.106  Sum_probs=212.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHh-hcccccCeEEE
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQ-QHIQLQGMVVA   78 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~   78 (409)
                      +.++||+||||||+|+++|+.|+++|++|+|+|+.+.+.  ...++..+   +.+.++++|+.+.... ......+..++
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~   80 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLY   80 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEE
Confidence            446899999999999999999999999999999987643  23344444   4678888887654322 12223333443


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEc---CCC--EEe
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLA---DGA--VFK  150 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~---~g~--~~~  150 (409)
                      ... +.  ..+.++       ...+.++|..|.+.|.+.+  .+++++++++|+++..+++.+. |++.   +|+  +++
T Consensus        81 ~~~-~~--~~~~~~-------~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~  150 (453)
T 3atr_A           81 SPD-MQ--TVWTVN-------GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVY  150 (453)
T ss_dssp             CTT-SS--CEEEEE-------EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred             CCC-Cc--eEEeEC-------CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEE
Confidence            221 11  111111       1235789999999998866  3789999999999998887754 5554   665  799


Q ss_pred             cCEEEEcCCCchHhHhHhCCCCC----cc--cCceeEEEeeecCccCCCcccc-ceee----cCceEEEEEecCCCeEEE
Q 015331          151 TKVLIGCDGVNSVVAKWLGFKKP----AF--AGRSDIRGCTDFKLRHGLEPKF-QQFL----GKGFRYGFLPCNDQTVYW  219 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~p~~~~~~~~  219 (409)
                      ||+||+|||.+|.+|+.++...+    .+  ....++...+....... ++.+ ..++    .++.+++++|.+++...+
T Consensus       151 ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~v  229 (453)
T 3atr_A          151 SKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIE-DHDYLRIFIDQETSPGGYWWYFPKGKNKVNV  229 (453)
T ss_dssp             CSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCT-TTTEEEEECCTTTSTTSCEEEEEEETTEEEE
T ss_pred             cCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCcc-CCCeEEEEECCCCCCCcEEEEEECCCCeEEE
Confidence            99999999999999999987542    11  12344444444333221 2222 2333    245678999999997777


Q ss_pred             EEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCC
Q 015331          220 FFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPM  299 (409)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~  299 (409)
                      .+.+.....   .....+.+.+.+.+....+...        .........++    .....++|..+|++++|||||.+
T Consensus       230 g~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~p----~~~~~~~~~~~~v~lvGDAAh~~  294 (453)
T 3atr_A          230 GLGIQGGMG---YPSIHEYYKKYLDKYAPDVDKS--------KLLVKGGALVP----TRRPLYTMAWNGIIVIGDSGFTV  294 (453)
T ss_dssp             EEEEESSSC---CCCHHHHHHHHHHHHCTTEEEE--------EEEEEEEEEEE----CSSCCSCSEETTEEECGGGGTCS
T ss_pred             EEEecCCCC---CCCHHHHHHHHHHhhhhhcCCC--------eEEeccceecc----CCCCCCceecCCEEEEeCcccCC
Confidence            666543321   1111223333322211111110        00011011111    12223467789999999999999


Q ss_pred             CCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHh
Q 015331          300 TPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIV  372 (409)
Q Consensus       300 ~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~  372 (409)
                      +|++|||+|+|++||..|++.|.+++...                +..+++|+.|+++|+++....+..+...
T Consensus       295 ~P~~G~G~~~Ai~da~~la~~l~~~l~~~----------------~~~~~~L~~Y~~~r~~~~~~~~~~~~~~  351 (453)
T 3atr_A          295 NPVHGGGKGSAMISGYCAAKAILSAFETG----------------DFSASGLWDMNICYVNEYGAKQASLDIF  351 (453)
T ss_dssp             CTTTCCCHHHHHHHHHHHHHHHHHHHHHT----------------CCSTTTTTHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHHcC----------------CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876531                1235789999999999998887766444

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=8.3e-36  Score=281.86  Aligned_cols=331  Identities=15%  Similarity=0.104  Sum_probs=208.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCc-hH-HHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGIS-DS-LRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~~~~~~~~~~~   80 (409)
                      +||+||||||+|+++|+.|+++  |++|+|+|+.+.+...++++.+++++.+.+...++. +. +.....+.....+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            4899999999999999999999  999999999988877788999998877622222333 33 333333444444443 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .+...     ..   ..+.....++|..|.+.|.+.+.  +++++++++|++++..           .++++|+||+||
T Consensus        80 -~g~~~-----~~---~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~Ad  139 (381)
T 3c4a_A           80 -HNEPS-----LM---STGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLAN  139 (381)
T ss_dssp             -SSSEE-----EC---CCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECC
T ss_pred             -CCeeE-----Ee---cCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECC
Confidence             22221     10   00122347899999999988763  6899999999887532           136899999999


Q ss_pred             CCchHhHhHh----CCCCCcccCceeEEEeeecCccCCCccccceeecCceE-EEEEecCCCeEEEEEEEcCCCC--CCC
Q 015331          159 GVNSVVAKWL----GFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFR-YGFLPCNDQTVYWFFNWCPSNQ--DKE  231 (409)
Q Consensus       159 G~~s~vr~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~--~~~  231 (409)
                      |.+|. |+.+    +.......+...+.+.....  .. ...+..+.+.+.. +.++|.+++...+.+....+..  ...
T Consensus       140 G~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  215 (381)
T 3c4a_A          140 GVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQLF--DQ-MNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARL  215 (381)
T ss_dssp             GGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSCC--SS-EEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTS
T ss_pred             CCCch-HHhhhhhcCCCcccCCccEEEEecCCCC--Cc-ceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCc
Confidence            99999 9887    33322222333443332211  11 1111112234432 3469998887544443321100  011


Q ss_pred             CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331          232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL  311 (409)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al  311 (409)
                      ...+++...+.+.+.+..+.+.. +++...   . ..++.....    ..++|..+||+|+|||||.++|+.|||+|+||
T Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~---~-~~~~~~~~~----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al  286 (381)
T 3c4a_A          216 GEMSEEASAEYVAKVFQAELGGH-GLVSQP---G-LGWRNFMTL----SHDRCHDGKLVLLGDALQSGHFSIGHGTTMAV  286 (381)
T ss_dssp             SSSCHHHHHHHHHHHTHHHHTTC-CCBCCT---T-TCSEEEEEC----CCSCSEETTEEECGGGTCCCCGGGCCHHHHHH
T ss_pred             ccCChHHHHHHHHHHhcccCCCc-hhhcCC---C-cceeeeccc----cCCCcccCCEEEEEccccccCCCccccHHHHH
Confidence            22345566666666665332211 111111   0 012221111    23467789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---------chhHHHHH
Q 015331          312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---------DGKIINFL  382 (409)
Q Consensus       312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---------~~~~~~~~  382 (409)
                      +||..|++.|...                    .+.+++|+.|+++|++++..++..+..+..         .......+
T Consensus       287 ~Da~~La~~L~~~--------------------~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  346 (381)
T 3c4a_A          287 VVAQLLVKALCTE--------------------DGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFV  346 (381)
T ss_dssp             HHHHHHHHHHHHS--------------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC------CHH
T ss_pred             HHHHHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhcCCHHHHH
Confidence            9999999999873                    156899999999999999999999877652         22344455


Q ss_pred             HHHHHHH
Q 015331          383 RDKIFSV  389 (409)
Q Consensus       383 r~~~~~~  389 (409)
                      |+.+++.
T Consensus       347 r~~~~~~  353 (381)
T 3c4a_A          347 QSFDARR  353 (381)
T ss_dssp             HHGGGTT
T ss_pred             HHHhhcc
Confidence            6665553

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=6.5e-31  Score=258.29  Aligned_cols=327  Identities=12%  Similarity=0.051  Sum_probs=211.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH------------cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchH--HHhh
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR------------LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS--LRQQ   68 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~------------~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~   68 (409)
                      ..+||+||||||+|+++|..|++            .|++|+|||+.+.++ .+.+..+.+++..+|+.+|+.+.  +.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~-~g~g~~~~p~~~~~l~~lGi~e~~~~~~~   84 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT-IGVGEGTWPSMRSTLSKIGIDENDFIRQC   84 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC-CCSCEECCTHHHHHHHHHTCCHHHHHHHT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC-cceeeechHhHHHHHHHcCCCHHHHHHHc
Confidence            46899999999999999999999            899999999876544 34588899999999999999986  5554


Q ss_pred             ccc-ccCeEEEeccC------Cc----------ccccccccc-------c-------------------------CC--C
Q 015331           69 HIQ-LQGMVVASSVS------CQ----------PASEISFKT-------K-------------------------GN--R   97 (409)
Q Consensus        69 ~~~-~~~~~~~~~~~------~~----------~~~~~~~~~-------~-------------------------~~--~   97 (409)
                      ... ..++.+..+..      +.          ......+..       .                         ..  .
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~  164 (526)
T 2pyx_A           85 DASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHF  164 (526)
T ss_dssp             TCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCC
T ss_pred             CCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCC
Confidence            332 22333322211      00          000001100       0                         00  0


Q ss_pred             CCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHh-HhHhCCC
Q 015331           98 GGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFK  171 (409)
Q Consensus        98 ~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~  171 (409)
                      .....+.++|..|.+.|.+.+   .+++++++ +|++++.++++  +.|++.+|.+++||+||+|||.+|.+ ++.++..
T Consensus       165 ~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~  243 (526)
T 2pyx_A          165 QNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVP  243 (526)
T ss_dssp             SSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCC
T ss_pred             CCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence            111235789999999998765   36899999 69999887543  46778887789999999999999999 6777765


Q ss_pred             CCccc----CceeEEEeeecCcc-CCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHH
Q 015331          172 KPAFA----GRSDIRGCTDFKLR-HGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSK  246 (409)
Q Consensus       172 ~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (409)
                      ...+.    ....+......... ....+.......+..+++++|..++.. ..+.+....      .+.+...+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~-~~~v~~~~~------~~~~~~~~~l~~~  316 (526)
T 2pyx_A          244 FLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTRKG-VGYVYSSSH------TNDIDAQKTLFNY  316 (526)
T ss_dssp             EEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSEEE-EEEEECTTT------CCHHHHHHHHHHH
T ss_pred             cccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCceE-EEEEecCCC------CChHHHHHHHHHH
Confidence            42211    11222222222211 111222222233455788999987533 333333221      1234556667777


Q ss_pred             hcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhc
Q 015331          247 CHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEAST  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~  326 (409)
                      +..+.+.+    .....   ..+++...     ...++..+|++++|||||+++|+.|||+|+|++||..|++.|...  
T Consensus       317 l~~~~~~l----~~~~~---~~~~~~~~-----~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~~--  382 (526)
T 2pyx_A          317 LGVDGAAA----DKLEP---RQLAINPG-----YRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPPN--  382 (526)
T ss_dssp             HTCCHHHH----HHCCC---EEEECCCE-----EESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCSC--
T ss_pred             HHhcCccc----ccCCc---eEEecccC-----ccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhhc--
Confidence            75553332    21211   12222211     123556799999999999999999999999999999999877531  


Q ss_pred             CCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          327 EKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                                       ....+.++++|+++|+++...+.++.
T Consensus       383 -----------------~~~~~~~l~~Y~~~~~~~~~~~~~~~  408 (526)
T 2pyx_A          383 -----------------RMVMDTISARVNERYQQHWQQIIDFL  408 (526)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence                             12567899999999999988876654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=100.00  E-value=1.2e-30  Score=258.53  Aligned_cols=340  Identities=14%  Similarity=0.057  Sum_probs=205.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCccCCc-ceeEEechhHHHHHHHcCCchHHHhhcccccC--
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL------GIRSLVLESSESLRVT-GFAITLWTNAWRALDAVGISDSLRQQHIQLQG--   74 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~------g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--   74 (409)
                      ++||+||||||+||++|+.|+++      |++|+||||.+.++.. .++..+.+++++.|  +   +.+...+.++..  
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l---~~~~~~g~~~~~~~  109 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--F---PDWKEKGAPLNTPV  109 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--C---TTHHHHTCCCCEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--H---HHHHhcCCceeeee
Confidence            47999999999999999999999      9999999999876542 45666787776654  2   233333333221  


Q ss_pred             --eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC-eEE-EEEc----
Q 015331           75 --MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL-FKL-VNLA----  144 (409)
Q Consensus        75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~-~~~-v~~~----  144 (409)
                        ..+........ ..++............+.++|..|.+.|.+.+.  +++++++++|+++..+++ .+. |.+.    
T Consensus       110 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~  188 (584)
T 2gmh_A          110 TEDRFGILTEKYR-IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGI  188 (584)
T ss_dssp             CEEEEEEECSSCE-EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEE
T ss_pred             chhheeeeccCCC-ccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccc
Confidence              11111111100 111110000011122457899999999988663  789999999999988764 343 7665    


Q ss_pred             --CC---------CEEecCEEEEcCCCchHhHhHh----CCCCCcccCce--eEEEeeecCccCCCccccceeec-----
Q 015331          145 --DG---------AVFKTKVLIGCDGVNSVVAKWL----GFKKPAFAGRS--DIRGCTDFKLRHGLEPKFQQFLG-----  202 (409)
Q Consensus       145 --~g---------~~~~ad~vV~AdG~~s~vr~~l----g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----  202 (409)
                        +|         .+++||+||+|||.+|.+|+.+    ++.....+...  .+...+..+..........++++     
T Consensus       189 ~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~~  268 (584)
T 2gmh_A          189 QKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDR  268 (584)
T ss_dssp             CTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTSCT
T ss_pred             cCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhheecCcccccCCeEEEEEeccccC
Confidence              23         5799999999999999998876    55432222211  22222233322111111122211     


Q ss_pred             -CceEEEEEecC--CCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhh
Q 015331          203 -KGFRYGFLPCN--DQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEV  279 (409)
Q Consensus       203 -~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (409)
                       .....+++|..  ++.+.+.+....+....  ..++   .+.+.+.. . ++.+.++++......+....+.. ... .
T Consensus       269 ~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~---~~~l~~~~-~-~p~i~~~l~~~~~~~~~~~~~~~-~~~-~  339 (584)
T 2gmh_A          269 HTYGGSFLYHLNEGEPLLALGFVVGLDYQNP--YLSP---FREFQRWK-H-HPSIKPTLEGGKRIAYGARALNE-GGF-Q  339 (584)
T ss_dssp             TSCEEEEEEECCSSSCEEEEEEEEETTCCCT--TCCH---HHHHHHHT-T-STTTHHHHTTCEEEEEEEEEEEC-CGG-G
T ss_pred             CcCCceEEEEecCCCCeEEEEEEEecCcccc--cCCh---HHHHHHHH-h-ChHHHHHhCCCeEEEecceEccC-CCc-c
Confidence             11224567877  67776666655433211  1122   23344333 2 45566666543211111111110 001 1


Q ss_pred             hccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhc-hHHHH---HHHHH
Q 015331          280 LWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFK-RNEIG---LKRYA  355 (409)
Q Consensus       280 ~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---l~~y~  355 (409)
                      ...+|..+|++|+|||||+++|+.|||+|+||+||..||+.|..++...                + ..+++   |+.|+
T Consensus       340 ~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g----------------~~~~~~a~~~L~~Ye  403 (584)
T 2gmh_A          340 SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE----------------NLQSKTIGLHVTEYE  403 (584)
T ss_dssp             GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCC----------------CCCCSSSSCCCTHHH
T ss_pred             cCCccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcC----------------CcchhhhhhhHHHHH
Confidence            2346778999999999999999999999999999999999999987531                0 12343   89999


Q ss_pred             HHhhhh-HHHHHHHhHHhcc
Q 015331          356 TERRWR-SCELISMAYIVGY  374 (409)
Q Consensus       356 ~~r~~~-~~~~~~~s~~~~~  374 (409)
                      ++|+++ +.+.+..++....
T Consensus       404 ~~r~~~~v~~~l~~~r~~~~  423 (584)
T 2gmh_A          404 DNLKNSWVWKELYSVRNIRP  423 (584)
T ss_dssp             HHHHTSHHHHHHHHTTTTTG
T ss_pred             HHHHHhHHHHHHHHHhChhH
Confidence            999987 6776666655533

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.97  E-value=3.6e-30  Score=252.59  Aligned_cols=322  Identities=12%  Similarity=0.026  Sum_probs=202.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchH--HHhhccccc-CeEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS--LRQQHIQLQ-GMVV   77 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~~-~~~~   77 (409)
                      .+||+|||||++|+++|+.|++   +|++|+|||+.+.+ ..+.+..+.+....+++.+|+.+.  +.......+ ++.+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~-~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR-RIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC-ceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEecccee
Confidence            3699999999999999999999   99999999998643 345677788889999999999875  444332221 2222


Q ss_pred             EeccC---------C-------ccc--------c-ccc---------------c-------ccc----C---------CC
Q 015331           78 ASSVS---------C-------QPA--------S-EIS---------------F-------KTK----G---------NR   97 (409)
Q Consensus        78 ~~~~~---------~-------~~~--------~-~~~---------------~-------~~~----~---------~~   97 (409)
                      ..+..         +       ...        . ...               .       ...    .         ..
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence            21110         0       000        0 000               0       000    0         00


Q ss_pred             C--CccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHhH-hHhCC
Q 015331           98 G--GHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVVA-KWLGF  170 (409)
Q Consensus        98 ~--~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~vr-~~lg~  170 (409)
                      .  ....+.++|..+.+.|.+.+  .+++++++ +|++++.++++  +.|++.+|++++||+||+|||.+|.++ +.++.
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~  239 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGG  239 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCC
Confidence            0  12345789999999998866  37899999 99999886544  678888888899999999999999984 55666


Q ss_pred             CCCc----ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHH
Q 015331          171 KKPA----FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSK  246 (409)
Q Consensus       171 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (409)
                      ....    ......+.............+.......++.+++++|..+. ..+.+.+...      ..++++..+.+.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~-~~~g~~~~~~------~~~~~~~~~~l~~~  312 (511)
T 2weu_A          240 RFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFKR-DGNGYVYSDE------FISPEEAERELRST  312 (511)
T ss_dssp             CEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSSE-EEEEEEECTT------TSCHHHHHHHHHHH
T ss_pred             CCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCCc-eEEEEEECCC------CCCHHHHHHHHHHH
Confidence            5321    11222222222222211012222233445567899999873 4444444321      12345555666665


Q ss_pred             hcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhc
Q 015331          247 CHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEAST  326 (409)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~  326 (409)
                      +.. .+.+         ......++...     ...++..+|++++|||||+++|+.|+|+|+|++||..|++.|..   
T Consensus       313 ~~~-~~~~---------~~~~~~~~~~~-----~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~---  374 (511)
T 2weu_A          313 VAP-GRDD---------LEANHIQMRIG-----RNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG---  374 (511)
T ss_dssp             HCT-TCTT---------SCCEEEECCCE-----EESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC---
T ss_pred             hCc-cccc---------ccceeEEeecc-----ccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc---
Confidence            532 1111         11111121111     12345579999999999999999999999999999999998763   


Q ss_pred             CCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331          327 EKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA  369 (409)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s  369 (409)
                      +                 +..+.+++.|+++|+++...+.++.
T Consensus       375 ~-----------------~~~~~~l~~Y~~~~~~~~~~~~~~~  400 (511)
T 2weu_A          375 E-----------------RWDPVLISAYNERMAHMVDGVKEFL  400 (511)
T ss_dssp             T-----------------TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1                 1456899999999999888777654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.97  E-value=7.1e-30  Score=251.70  Aligned_cols=323  Identities=14%  Similarity=0.067  Sum_probs=204.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHH-HHHHcCCchH--HHhhccccc-
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWR-ALDAVGISDS--LRQQHIQLQ-   73 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~--~~~~~~~~~-   73 (409)
                      |++.+||+|||||++|+++|+.|++   .|++|+|||+...+. .+.+..+.+.+.. +++.+|+.+.  +........ 
T Consensus         2 ~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~   80 (538)
T 2aqj_A            2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKA   80 (538)
T ss_dssp             CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEEC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhC
Confidence            1456899999999999999999999   999999999966443 3457888888998 9999998865  433222221 


Q ss_pred             CeEEEeccC--------------Cccc--cccccc-----------ccC-----------------------CCCCcccc
Q 015331           74 GMVVASSVS--------------CQPA--SEISFK-----------TKG-----------------------NRGGHEVR  103 (409)
Q Consensus        74 ~~~~~~~~~--------------~~~~--~~~~~~-----------~~~-----------------------~~~~~~~~  103 (409)
                      ++.+..+..              +...  ....+.           ..+                       .......+
T Consensus        81 g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (538)
T 2aqj_A           81 AIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAW  160 (538)
T ss_dssp             EEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEE
T ss_pred             CccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccE
Confidence            122221111              0000  000000           000                       00012235


Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHhH-hHhCCCCCccc--
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVVA-KWLGFKKPAFA--  176 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~vr-~~lg~~~~~~~--  176 (409)
                      .+++..+.+.|.+.+  .+++++++ +|++++.++++  +.|++.+|.+++||+||+|||.+|.++ +.++.....+.  
T Consensus       161 ~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~  239 (538)
T 2aqj_A          161 HFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDY  239 (538)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTT
T ss_pred             EEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccc
Confidence            789999999998866  37899999 89999886543  578888888899999999999999995 45565432221  


Q ss_pred             --CceeEEEeeecCccC-CCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHH
Q 015331          177 --GRSDIRGCTDFKLRH-GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQ  253 (409)
Q Consensus       177 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (409)
                        ...++.......... ...+.......+..+++++|..++. .+.+.+...      ..+++...+.+.+.+... + 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~g~v~~~~------~~~~~~~~~~l~~~~~~~-~-  310 (538)
T 2aqj_A          240 LLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGRF-GSGYVFSSH------FTSRDQATADFLKLWGLS-D-  310 (538)
T ss_dssp             CCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTEE-EEEEEECTT------TSCHHHHHHHHHHHHTCC-T-
T ss_pred             cccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCce-EEEEEEcCC------CCChHHHHHHHHHHhcCC-C-
Confidence              112222222221110 0111112223455678999998853 333344321      123455566666666431 1 


Q ss_pred             HHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcc
Q 015331          254 VKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVT  333 (409)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~  333 (409)
                      +      .   ....+++...     ...++..+|++++|||||+++|+.|||+|+|++||..|++.|..   +      
T Consensus       311 ~------~---~~~~~~~~~~-----~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~---~------  367 (538)
T 2aqj_A          311 N------Q---PLNQIKFRVG-----RNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD---T------  367 (538)
T ss_dssp             T------C---CCEEEECCCE-----EESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB---T------
T ss_pred             C------C---CceEEeeccc-----cccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc---c------
Confidence            1      1   1112222111     12355679999999999999999999999999999999987652   1      


Q ss_pred             cCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331          334 KDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM  368 (409)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~  368 (409)
                                 ...+.+++.|+++|+++...+.+.
T Consensus       368 -----------~~~~~~l~~Y~~~~~~~~~~~~~~  391 (538)
T 2aqj_A          368 -----------SFDPRLSDAFNAEIVHMFDDCRDF  391 (538)
T ss_dssp             -----------TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                       245678999999999988776654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.97  E-value=7.7e-30  Score=251.73  Aligned_cols=324  Identities=15%  Similarity=0.097  Sum_probs=206.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHH-HHHHcCCchH--HHhhcccc-cCe
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWR-ALDAVGISDS--LRQQHIQL-QGM   75 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~--~~~~~~~~-~~~   75 (409)
                      +.+||+|||||++|+++|+.|++   .|++|+|||+.+.+. .+.+..+.+.+.. +++.+|+.+.  +....... .++
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~  102 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAI  102 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEee
Confidence            46899999999999999999999   999999999976543 3457888899999 9999999876  54433322 223


Q ss_pred             EEEeccCC-------------ccccccccc--------------------------------------ccC-------CC
Q 015331           76 VVASSVSC-------------QPASEISFK--------------------------------------TKG-------NR   97 (409)
Q Consensus        76 ~~~~~~~~-------------~~~~~~~~~--------------------------------------~~~-------~~   97 (409)
                      .+..+...             .......+.                                      ...       ..
T Consensus       103 ~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (550)
T 2e4g_A          103 KFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGS  182 (550)
T ss_dssp             EEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSC
T ss_pred             eEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCC
Confidence            22222111             000000000                                      000       00


Q ss_pred             -CCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHh-HhHhCC
Q 015331           98 -GGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGF  170 (409)
Q Consensus        98 -~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~  170 (409)
                       .....+.+++..+.+.|.+.+   ++++++++ +|++++.++++  +.|++.+|.++.||+||+|+|.+|.+ ++.++.
T Consensus       183 ~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~  261 (550)
T 2e4g_A          183 KVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEE  261 (550)
T ss_dssp             BCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             CCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCC
Confidence             011235689999999998866   37899999 99999876544  67888888889999999999999998 566676


Q ss_pred             CCCccc----CceeEEEeeecCccC-CCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHH
Q 015331          171 KKPAFA----GRSDIRGCTDFKLRH-GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLS  245 (409)
Q Consensus       171 ~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (409)
                      ....+.    ....+.......... ...+.......++.+++++|..+. ....+.+...      ..++++..+.+.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~~-~~~g~v~~~~------~~~~~~~~~~l~~  334 (550)
T 2e4g_A          262 PFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGR-FGTGYVYSSR------FATEDEAVREFCE  334 (550)
T ss_dssp             CEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSSE-EEEEEEECTT------TSCHHHHHHHHHH
T ss_pred             CcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCCc-cceEEEEecC------CCChHHHHHHHHH
Confidence            532221    111222112221110 011222222335567889998773 3333334221      1234555566666


Q ss_pred             HhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHh
Q 015331          246 KCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEAS  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~  325 (409)
                      .+...+ .+         ......++...     ...++..+|++++|||||+++|+.|||+|+|++||..|++.|..  
T Consensus       335 ~~~~~p-~l---------~~~~~i~~~~~-----~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~--  397 (550)
T 2e4g_A          335 MWHLDP-ET---------QPLNRIRFRVG-----RNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD--  397 (550)
T ss_dssp             HTTCCT-TT---------SCCEEEECCCE-----EESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC--
T ss_pred             hhCcCc-cc---------CCCceEEecCC-----CccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc--
Confidence            654321 11         11111111111     12245678999999999999999999999999999999987653  


Q ss_pred             cCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhH
Q 015331          326 TEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAY  370 (409)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~  370 (409)
                       +                 ...++++++|+++|+++...+.++..
T Consensus       398 -~-----------------~~~~~~l~~Y~~~~~~~~~~i~~~~~  424 (550)
T 2e4g_A          398 -K-----------------SLNPVLTARFNREIETMFDDTRDFIQ  424 (550)
T ss_dssp             -T-----------------TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -c-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1                 24578999999999999887776653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.96  E-value=4.3e-28  Score=232.26  Aligned_cols=350  Identities=17%  Similarity=0.132  Sum_probs=200.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-c---eeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-G---FAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+... +   .+......++..++.+|+.. +.....++.+..+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~~~~~  100 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNE-WPSEEFGYFGHYYYV  100 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCC-SCHHHHCEEEEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhh-hhhhcccccceeEEE
Confidence            369999999999999999999999999999998743211 1   22334556777778886521 111222333444333


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCc-eEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSS-KVVSVEESGLFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~-~v~~v~~~~~~~~v~~~~g~~~~ad~vV~  156 (409)
                      ....    .+.+....   ......+++..+...|.+.+.  ++++++.. .+.+++            .....+|+||+
T Consensus       101 ~~~~----~~~~~~~~---~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~------------~~~~~ad~VV~  161 (430)
T 3ihm_A          101 GGPQ----PMRFYGDL---KAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLE------------GLSEQYDLLVV  161 (430)
T ss_dssp             CSSS----CEEEEEEE---EEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHH------------HHHTTSSEEEE
T ss_pred             CCCC----ccccchhc---CCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhhh------------hhcccCCEEEE
Confidence            2211    11111100   122346888888888887653  56665521 011110            00136899999


Q ss_pred             cCCCchHhHhHhCCC-CCcc--cCceeEEEeee-cCccCCCccccceeecCceEEEEEec--CCCeEEEEEEEcCCCCCC
Q 015331          157 CDGVNSVVAKWLGFK-KPAF--AGRSDIRGCTD-FKLRHGLEPKFQQFLGKGFRYGFLPC--NDQTVYWFFNWCPSNQDK  230 (409)
Q Consensus       157 AdG~~s~vr~~lg~~-~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~  230 (409)
                      |||.+|.++...... ...+  .......+++. ...+......+..+.+.+ .++++|.  .++...+.+.+..+....
T Consensus       162 AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~~~~~G-~~~~~p~~~~~g~~~~~~~~~~~~~~~  240 (430)
T 3ihm_A          162 CTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFSPGHG-ELIEIPTLSFNGMSTALVLENHIGSDL  240 (430)
T ss_dssp             CCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEEETTTE-EEEEEEEEETTEEEEEEEEEECTTSSS
T ss_pred             CCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeeecCCCc-ceEEecccCCCcceEEEEEEecCCCcH
Confidence            999999886432111 1111  11222222221 111111112223333333 4566775  334444444444333211


Q ss_pred             -C-----CCCChhHHHHHHHHHhcCCCHHHHHHHHcCC------CCceeeccccccCchhhhccccCCCcEEE-eccCCC
Q 015331          231 -E-----LEGNPDKTKQFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCV-AGDAFH  297 (409)
Q Consensus       231 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~l-vGDAA~  297 (409)
                       .     ...+++++.+.+++.+..+.+.+.+.+....      ...+.....  .+.......+|..+++++ +|||||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~GDAah  318 (430)
T 3ihm_A          241 EVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGV--VPAFRDGHATLNNGKTIIGLGDIQA  318 (430)
T ss_dssp             GGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCEESSSTTSEEEECC--CCEEBCSEEECTTSCEEEECGGGTE
T ss_pred             HHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhccccCccceeecce--eecccccccccCCCCEEEEecCccc
Confidence             1     1136777777888888777787777665543      111111111  011111234677888888 999999


Q ss_pred             CCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhh-hhHHHHHHHhHHhcc--
Q 015331          298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERR-WRSCELISMAYIVGY--  374 (409)
Q Consensus       298 ~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~-~~~~~~~~~s~~~~~--  374 (409)
                      .++|++|||+|+|++||..|++.|...  +                  +.+++|..|+.+|+ .++....+.+..+..  
T Consensus       319 ~~~p~~g~G~~~a~~da~~l~~~l~~~--~------------------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  378 (430)
T 3ihm_A          319 TVDPVLGQGANMASYAAWILGEEILAH--S------------------VYDLRFSEHLERRRQDRVLCATRWTNFTLSAL  378 (430)
T ss_dssp             ECCGGGCCHHHHHHHHHHHHHHHHHHC--S------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHHHhc--C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999973  1                  46789999999888 777777777655532  


Q ss_pred             ---chhHHHHHHHHHHHHHhhhhhh
Q 015331          375 ---DGKIINFLRDKIFSVLLGRLMM  396 (409)
Q Consensus       375 ---~~~~~~~~r~~~~~~~~~~~~~  396 (409)
                         .......++.......+.+.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~  403 (430)
T 3ihm_A          379 SALPPEFLAFLQILSQSREMADEFT  403 (430)
T ss_dssp             HHCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhhCHHHHHHHH
Confidence               2233344444444444444443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.91  E-value=4.3e-24  Score=207.72  Aligned_cols=139  Identities=20%  Similarity=0.251  Sum_probs=104.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|||+.+.+... ....+.+.+.+.|+.+|+++....               
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~~~~~~~~~~~~l~~~g~~~~~~~---------------  154 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-NVLHLWPFTIHDLRALGAKKFYGR---------------  154 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-CEEECCHHHHHHHHTTTHHHHCTT---------------
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-CcccCChhHHHHHHHcCCcccccc---------------
Confidence            3579999999999999999999999999999999876432 456677888888888876432100               


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe---CCeEEEEE--c-CC--CEEecC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEES---GLFKLVNL--A-DG--AVFKTK  152 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~---~~~~~v~~--~-~g--~~~~ad  152 (409)
                            +..        .....+++..+.+.|.+.+  .+++++++++|++++.+   ++.+.|++  . +|  .++++|
T Consensus       155 ------~~~--------~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad  220 (497)
T 2bry_A          155 ------FCT--------GTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD  220 (497)
T ss_dssp             ------TTC--------TTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS
T ss_pred             ------ccc--------cccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC
Confidence                  000        0112466777888777655  37899999999999874   34677777  3 55  468999


Q ss_pred             EEEEcCCCchHhHhHhCCC
Q 015331          153 VLIGCDGVNSVVAKWLGFK  171 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~  171 (409)
                      +||+|||.+|.+|+..+..
T Consensus       221 ~VV~A~G~~S~~r~~~~~~  239 (497)
T 2bry_A          221 VLISAAGGKFVPEGFTIRE  239 (497)
T ss_dssp             EEEECCCTTCCCTTCEEEE
T ss_pred             EEEECCCCCcccccccchh
Confidence            9999999999998766543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.69  E-value=3.1e-15  Score=140.88  Aligned_cols=67  Identities=12%  Similarity=0.080  Sum_probs=55.2

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCch-HhHhHhCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNS-VVAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s-~vr~~lg~~  171 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+. |++.+| +++||.||+|+|.+| .+.+.++..
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCC
T ss_pred             eECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCC
Confidence            467777888777655  3789999999999998888887 888777 799999999999998 467777765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.68  E-value=2.9e-16  Score=147.97  Aligned_cols=194  Identities=14%  Similarity=0.041  Sum_probs=110.7

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCCCCcccCcee
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFKKPAFAGRSD  180 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~~~~~~~~~  180 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+.|++.+| +++||.||+|+|.+|. +.+.++...+.......
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~~~~g~  238 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGE  238 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCceeccceE
Confidence            567778888887765  3689999999999998888888888777 7999999999999986 77777654332221111


Q ss_pred             EEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHc
Q 015331          181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVEN  260 (409)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (409)
                      +. ....+.. ..  .. .++..  ..+++|..++.+.+.......  ......++ +..+.+.+.+.++.+.+.    .
T Consensus       239 ~~-~~~~~~~-~~--~~-~~~~~--~~~~~p~~~g~~~vG~~~~~~--~~~~~~~~-~~~~~l~~~~~~~~p~l~----~  304 (382)
T 1ryi_A          239 CL-SVWNDDI-PL--TK-TLYHD--HCYIVPRKSGRLVVGATMKPG--DWSETPDL-GGLESVMKKAKTMLPAIQ----N  304 (382)
T ss_dssp             EE-EEECCSS-CC--CS-EEEET--TEEEEECTTSEEEEECCCEET--CCCCSCCH-HHHHHHHHHHHHHCGGGG----G
T ss_pred             EE-EECCCCC-Cc--cc-eEEcC--CEEEEEcCCCeEEEeeccccc--CCCCCCCH-HHHHHHHHHHHHhCCCcC----C
Confidence            11 1121111 11  11 22233  356788887764443321111  11112222 223344443332222211    1


Q ss_pred             CCCCceeeccccccCchhhhccccCCCcEEEeccCC-----CCCCCCCcchhhhHhhHHHHHHHHHHH
Q 015331          261 TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAF-----HPMTPDIGQGGCAALEDGIILARCIAE  323 (409)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA-----~~~~P~~G~G~~~al~da~~La~~l~~  323 (409)
                      ..  ....+.  ...       .+..++..++|++.     ....++.|.|+.+|...|..+++.|..
T Consensus       305 ~~--~~~~w~--g~~-------~~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          305 MK--VDRFWA--GLR-------PGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             SE--EEEEEE--EEE-------EECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             Cc--eeeEEE--Eec-------ccCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence            10  011110  000       12346677778753     345678899999999999999988764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.67  E-value=3.6e-15  Score=150.62  Aligned_cols=158  Identities=17%  Similarity=0.120  Sum_probs=94.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC--cc-eeEEech------------------hHHHHHHHcCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV--TG-FAITLWT------------------NAWRALDAVGIS   62 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~-~~~~~~~------------------~~~~~l~~~gl~   62 (409)
                      .+||+|||||++|+++|+.|+++|++|+|||+.+.+..  .+ .+..+.+                  .+.++++.+++.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVK  351 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCCC
Confidence            47999999999999999999999999999999765431  11 1111111                  123333443221


Q ss_pred             hHHHh---------------------hcccccCeEEEeccCCccccccccccc-CCCCCccccccCHHHHHHHHHhhC--
Q 015331           63 DSLRQ---------------------QHIQLQGMVVASSVSCQPASEISFKTK-GNRGGHEVRSVKRSLLMEALEREL--  118 (409)
Q Consensus        63 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~--  118 (409)
                      .....                     .+.+...........  .......... ..........++...+.+.|.+.+  
T Consensus       352 ~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~--~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~  429 (676)
T 3ps9_A          352 FDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANA--VEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQ  429 (676)
T ss_dssp             CCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHH--HHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHH
T ss_pred             cCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHH--HHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHh
Confidence            10000                     000000000110000  0000000000 000001123466778888887755  


Q ss_pred             CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          119 PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       119 ~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .+++++++++|+++..++++|.|++.+|.++.||.||+|+|.+|.
T Consensus       430 ~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          430 QGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             CCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            378999999999999999999999988888999999999999986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.67  E-value=3e-15  Score=143.73  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=51.8

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCc---eEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSS---KVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~---~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+.+.|.+.+  .++++++++   +|+++..+++.++ |++.+|.+++||.||+|+|.+|.
T Consensus       157 ~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          157 WAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            456677888887755  378999999   9999999888888 99999988999999999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.65  E-value=1.1e-15  Score=143.81  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~  171 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+.|++.+| +++||.||+|+|.+|. +.+.++..
T Consensus       150 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          150 DIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             eECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence            467778888887765  3789999999999999988899998887 7999999999999984 67777765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.65  E-value=1.1e-14  Score=137.80  Aligned_cols=172  Identities=19%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcce---eEE-ec----h-hH-HHHHHHcCCchHHHhh-c
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF---AIT-LW----T-NA-WRALDAVGISDSLRQQ-H   69 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~---~~~-~~----~-~~-~~~l~~~gl~~~~~~~-~   69 (409)
                      |++++||+|||||++|+++|+.|+++|++|+|+|+.+.....+.   ... +.    . .. ....+.+.+++++.+. .
T Consensus         1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (397)
T 2oln_A            1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCE   80 (397)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhC
Confidence            66678999999999999999999999999999999876531111   111 11    0 00 0111222223333221 1


Q ss_pred             cc---ccCeEEEeccCC------------------ccccccc-------ccccCCCC------CccccccCHHHHHHHHH
Q 015331           70 IQ---LQGMVVASSVSC------------------QPASEIS-------FKTKGNRG------GHEVRSVKRSLLMEALE  115 (409)
Q Consensus        70 ~~---~~~~~~~~~~~~------------------~~~~~~~-------~~~~~~~~------~~~~~~i~r~~l~~~l~  115 (409)
                      ..   ..+.........                  .....+.       ++......      ......++...+.+.|.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  160 (397)
T 2oln_A           81 RRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALF  160 (397)
T ss_dssp             CCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHH
T ss_pred             ccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHH
Confidence            01   111111111110                  0000000       00000000      00112455566777776


Q ss_pred             hhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch-HhHhHhCCCCC
Q 015331          116 REL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS-VVAKWLGFKKP  173 (409)
Q Consensus       116 ~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s-~vr~~lg~~~~  173 (409)
                      +.+  .+++++++++|++++.+++.++|++.++ +++||.||+|+|.+| .+++.++...+
T Consensus       161 ~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~p  220 (397)
T 2oln_A          161 TLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGARLA  220 (397)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCCCC
T ss_pred             HHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCCCC
Confidence            654  3789999999999999888888887666 699999999999995 56777776433

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.65  E-value=3.8e-15  Score=141.40  Aligned_cols=197  Identities=12%  Similarity=-0.019  Sum_probs=105.2

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCch-HhHhHhCCCCCcccCce
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNS-VVAKWLGFKKPAFAGRS  179 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s-~vr~~lg~~~~~~~~~~  179 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++. +.|++.+| ++++|.||+|+|.+| .+++.++...+......
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~~~~~~  248 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPIQSHPL  248 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCccccce
Confidence            456667777777655  37899999999999987665 56888777 699999999999998 57888877654332111


Q ss_pred             eEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHH
Q 015331          180 DIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVE  259 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (409)
                      .+. ... +......   ..+...+..+++.|..++.+.+......... .....+. ...+.+.+.+..+.|.+    .
T Consensus       249 ~~~-~~~-~~~~~~~---~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~~p~l----~  317 (405)
T 2gag_B          249 QAL-VSE-LFEPVHP---TVVMSNHIHVYVSQAHKGELVMGAGIDSYNG-YGQRGAF-HVIQEQMAAAVELFPIF----A  317 (405)
T ss_dssp             EEE-EEE-EBCSCCC---SEEEETTTTEEEEECTTSEEEEEEEECSSCC-CSSCCCT-HHHHHHHHHHHHHCGGG----G
T ss_pred             eEE-Eec-CCccccC---ceEEeCCCcEEEEEcCCCcEEEEeccCCCCc-cccCCCH-HHHHHHHHHHHHhCCcc----c
Confidence            111 111 1111111   1222333346788888887665544432111 1111222 22333444333222221    1


Q ss_pred             cCCCCceeeccccccCchhhhccccCCCcEEEeccCC----CCCCCCCcchhhhHhhHHHHHHHHHHH
Q 015331          260 NTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAF----HPMTPDIGQGGCAALEDGIILARCIAE  323 (409)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA----~~~~P~~G~G~~~al~da~~La~~l~~  323 (409)
                      ......  .+.  ...       ....++..++|++.    ....-+.|.|+..|...|..|++.|..
T Consensus       318 ~~~~~~--~w~--g~~-------~~t~d~~p~ig~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~g  374 (405)
T 2gag_B          318 RAHVLR--TWG--GIV-------DTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIAN  374 (405)
T ss_dssp             GCEECE--EEE--EEE-------EEETTSCCEEEECSSBTEEEEECCGGGCSTTHHHHHHHHHHHHHH
T ss_pred             cCCcce--EEe--ecc-------ccCCCCCCEecccCCCCEEEEecCCCchhhHHHHHHHHHHHHHhC
Confidence            111111  110  000       12357788888864    111223456666666666666666654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.64  E-value=2.7e-15  Score=140.47  Aligned_cols=68  Identities=15%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe-EEEEEcCCC--EEecCEEEEcCCCch-HhHhHh-CCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF-KLVNLADGA--VFKTKVLIGCDGVNS-VVAKWL-GFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~--~~~ad~vV~AdG~~s-~vr~~l-g~~  171 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.++++ +.|.+.+|+  +++||.||+|+|.+| .+.+.+ |.+
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            466777888887765  37899999999999988765 889888883  799999999999999 466777 765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.63  E-value=3.9e-15  Score=150.56  Aligned_cols=60  Identities=13%  Similarity=0.003  Sum_probs=50.9

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCC-EEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGA-VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~s~  163 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.++++|.|++.+|. +++||.||+|+|.+|.
T Consensus       408 ~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          408 WLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            456777888887755  37899999999999998888999998887 7999999999999985

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.63  E-value=3.7e-15  Score=140.66  Aligned_cols=165  Identities=14%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC--C-cce-eEEech------hHHH-HHHHcCCchHHHhhc---
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR--V-TGF-AITLWT------NAWR-ALDAVGISDSLRQQH---   69 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~--~-~~~-~~~~~~------~~~~-~l~~~gl~~~~~~~~---   69 (409)
                      ++||+|||||++|+++|+.|+++|++|+|||+.....  . ... +-.+.+      ...+ ..+.+.+++.+.+..   
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   82 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCCc
Confidence            5899999999999999999999999999999987543  1 111 111110      1111 111122223332211   


Q ss_pred             -ccccCeEEEecc-C--------------Cccccccc-------ccccCCCC------CccccccCHHHHHHHHHhhC--
Q 015331           70 -IQLQGMVVASSV-S--------------CQPASEIS-------FKTKGNRG------GHEVRSVKRSLLMEALEREL--  118 (409)
Q Consensus        70 -~~~~~~~~~~~~-~--------------~~~~~~~~-------~~~~~~~~------~~~~~~i~r~~l~~~l~~~~--  118 (409)
                       ....+....... .              +.....+.       ++......      ......++...+.+.|.+.+  
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (389)
T 2gf3_A           83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEA  162 (389)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHH
T ss_pred             ceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHHH
Confidence             011111111111 0              00000000       00000000      01112456677888877755  


Q ss_pred             CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhC
Q 015331          119 PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLG  169 (409)
Q Consensus       119 ~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg  169 (409)
                      .+++++++++|++++.+++.+.|++.++ +++||.||+|+|.+|. +.+.++
T Consensus       163 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          163 RGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             TTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             CCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence            3789999999999998888888888766 6999999999999985 445555

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.62  E-value=1.1e-15  Score=137.56  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+||+|||||||||+||+.|+++|++|+||||.+.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            3899999999999999999999999999999998764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.60  E-value=3e-14  Score=137.95  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .+.+.|.+.+..++|+++++|++|+.++++++|++.+|++++||.||.|...+..
T Consensus       236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~  290 (470)
T 3i6d_A          236 TLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAA  290 (470)
T ss_dssp             HHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHH
Confidence            5667777776557899999999999998889999999988999999999987664

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.59  E-value=9.3e-14  Score=135.34  Aligned_cols=210  Identities=11%  Similarity=-0.001  Sum_probs=107.7

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEc---CCC--EEecCEEEEcCCCchH-hHhH-hCCCC-C
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLA---DGA--VFKTKVLIGCDGVNSV-VAKW-LGFKK-P  173 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~-lg~~~-~  173 (409)
                      .++...+...|.+.+  .+++++.+++|+++..+++.+.|++.   +|+  +++||.||+|+|.+|. +++. ++... .
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~  224 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPY  224 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSS
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCccc
Confidence            467888888888765  37899999999999988877778774   565  7899999999999996 4554 54321 1


Q ss_pred             cccCceeEEEeeecCccCCCccccceee--cCceEEEEEecCCCeEEEEEEEcCCC-CCCCCCCChhHHHHHHHHHhcCC
Q 015331          174 AFAGRSDIRGCTDFKLRHGLEPKFQQFL--GKGFRYGFLPCNDQTVYWFFNWCPSN-QDKELEGNPDKTKQFVLSKCHDL  250 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  250 (409)
                      ...........+.  ...+  .....++  .++..++++|..++...+..+..... .......+++.. +++++.+..+
T Consensus       225 ~i~p~rG~~~~~~--~~~~--~~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~~~~~-~~l~~~~~~~  299 (501)
T 2qcu_A          225 GIRLIKGSHIVVP--RVHT--QKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEI-NYLLNVYNTH  299 (501)
T ss_dssp             CBCCEEEEEEEEE--CSSS--CSCEEEEECTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCCHHHH-HHHHHHHHHH
T ss_pred             ccccceeEEEEEC--CCCC--CceEEEeecCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCCHHHH-HHHHHHHHHh
Confidence            1111111111112  1111  1111222  34556788999877543332211111 111122233322 3333333211


Q ss_pred             CH-HHHHHHHcCCCC-ce-eeccccc-cCchhhhccccCCCcEEE--eccCCCCCCCCCcchhhhHhhHHHHHHHHHHHH
Q 015331          251 PE-QVKAIVENTPLD-SI-LVSPLRY-RYPWEVLWGNISKGNVCV--AGDAFHPMTPDIGQGGCAALEDGIILARCIAEA  324 (409)
Q Consensus       251 ~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~v~l--vGDAA~~~~P~~G~G~~~al~da~~La~~l~~~  324 (409)
                      .+ .+    ...... .+ ...|... ..|.   ......+.++.  .++..+-+-.++|.|+..+-.-|..+++.+.+.
T Consensus       300 ~p~~l----~~~~v~~~~aG~Rp~~~d~~p~---~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~~~  372 (501)
T 2qcu_A          300 FKKQL----SRDDIVWTYSGVRPLCDDESDS---PQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPY  372 (501)
T ss_dssp             BSSCC----CGGGCCEEEEEEECCBCCCCSS---GGGSCCCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHGGG
T ss_pred             cCCCC----CcccEEEEEEEEeeecCCCCCc---cccCcCceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHHHh
Confidence            11 11    001111 11 1111111 0110   11223455665  566666666677888777766666666666665


Q ss_pred             h
Q 015331          325 S  325 (409)
Q Consensus       325 ~  325 (409)
                      +
T Consensus       373 ~  373 (501)
T 2qcu_A          373 Y  373 (501)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.57  E-value=2.6e-14  Score=135.34  Aligned_cols=151  Identities=20%  Similarity=0.206  Sum_probs=95.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-------ceeEEe---c---------hhHHHHHHHcCCc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-------GFAITL---W---------TNAWRALDAVGIS   62 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~~---~---------~~~~~~l~~~gl~   62 (409)
                      ++++||+|||||++|+++|+.|+++|.+|+|+|+.+.+...       .+...-   .         ......+..+...
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            35689999999999999999999999999999999865321       111110   0         0011222332211


Q ss_pred             hHHHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE
Q 015331           63 DSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL  140 (409)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~  140 (409)
                      +.+... . -.++.+.....+                .......+..+.+.|.+.+.  +++++++++|+++..+++.+.
T Consensus       105 ~~~~~~-~-~~Gi~~~~~~~g----------------~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~  166 (417)
T 3v76_A          105 DFVALV-E-RHGIGWHEKTLG----------------QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFR  166 (417)
T ss_dssp             HHHHHH-H-HTTCCEEECSTT----------------EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEE
T ss_pred             HHHHHH-H-HcCCCcEEeeCC----------------EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEE
Confidence            111000 0 001111111110                11113456677777776553  789999999999999988999


Q ss_pred             EEEcCCCEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331          141 VNLADGAVFKTKVLIGCDGVNS-----------VVAKWLGFK  171 (409)
Q Consensus       141 v~~~~g~~~~ad~vV~AdG~~s-----------~vr~~lg~~  171 (409)
                      |.+.+| +++||.||+|+|.+|           .+++.+|..
T Consensus       167 V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          167 VTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             EEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             EEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence            999888 799999999999998           456666665

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.54  E-value=1.7e-13  Score=128.39  Aligned_cols=59  Identities=15%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.+++.+.|++.+|+ ++||.||+|+|.+|.
T Consensus       145 ~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          145 FLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGG
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHH
Confidence            455667777777655  37899999999999988888888888775 999999999999884

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.53  E-value=8.1e-14  Score=137.27  Aligned_cols=68  Identities=15%  Similarity=-0.048  Sum_probs=53.5

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcC---C--CEEecCEEEEcCCCch-HhHhHhCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLAD---G--AVFKTKVLIGCDGVNS-VVAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~---g--~~~~ad~vV~AdG~~s-~vr~~lg~~  171 (409)
                      .++...+...|.+.+  .+++++.+++|+++..+++++ .|++.+   |  .+++||.||+|+|.+| .+++.+|..
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            567777888877655  378999999999999888764 466654   3  3789999999999999 567777665

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.53  E-value=1.8e-13  Score=131.73  Aligned_cols=69  Identities=20%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEE---------------eCCe-EEEEEcCCCEE--ecCEEEEcCCCchH
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEE---------------SGLF-KLVNLADGAVF--KTKVLIGCDGVNSV  163 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~---------------~~~~-~~v~~~~g~~~--~ad~vV~AdG~~s~  163 (409)
                      .++...+.+.|.+.+  .+++++++++|++++.               +++. +.|.+.+| ++  .||.||+|+|.+|.
T Consensus       177 ~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred             EEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence            466778888887765  3789999999999987               4555 46788777 58  99999999999986


Q ss_pred             -hHhHhCCCCC
Q 015331          164 -VAKWLGFKKP  173 (409)
Q Consensus       164 -vr~~lg~~~~  173 (409)
                       +.+.++...+
T Consensus       256 ~l~~~~g~~~~  266 (448)
T 3axb_A          256 RLLNPLGIDTF  266 (448)
T ss_dssp             HHHGGGTCCCS
T ss_pred             HHHHHcCCCCc
Confidence             6777766543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.52  E-value=2.4e-13  Score=125.94  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeE-----------------EechhHHHHHHHcCCchH
Q 015331            5 EDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAI-----------------TLWTNAWRALDAVGISDS   64 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~-----------------~~~~~~~~~l~~~gl~~~   64 (409)
                      +||+|||||++|+++|+.|++   +|++|+||||++.+.......                 ...+.....+..+  .+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~--~~~   79 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRF--YDE   79 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHH--HHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHH--HHH
Confidence            599999999999999999999   999999999987543211110                 0111100011000  011


Q ss_pred             HHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc
Q 015331           65 LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA  144 (409)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~  144 (409)
                      +...+.    ...+.  .. . ..........  .+. ..-.-..+.+.|.+.+ +++|+++++|++++.++++|+|++.
T Consensus        80 ~~~~g~----~~~~~--~~-~-~~~~~~~~~~--~~~-~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~~~v~~~  147 (342)
T 3qj4_A           80 LLAYGV----LRPLS--SP-I-EGMVMKEGDC--NFV-APQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDKWEVSKQ  147 (342)
T ss_dssp             HHHTTS----CEECC--SC-E-ETCCC--CCE--EEE-CTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSSEEEEES
T ss_pred             HHhCCC----eecCc--hh-h-cceeccCCcc--cee-cCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCEEEEEEC
Confidence            111110    00000  00 0 0000000000  000 0011234566666655 6899999999999999989999999


Q ss_pred             CCCEEecCEEEEcCCCc
Q 015331          145 DGAVFKTKVLIGCDGVN  161 (409)
Q Consensus       145 ~g~~~~ad~vV~AdG~~  161 (409)
                      +|+++.+|.||.|....
T Consensus       148 ~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          148 TGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             SSCCEEESEEEECSCHH
T ss_pred             CCCEEEcCEEEECCCHH
Confidence            99888999999999753

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.50  E-value=1.2e-12  Score=127.72  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             HHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHhHhHhC
Q 015331          110 LMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVVAKWLG  169 (409)
Q Consensus       110 l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  169 (409)
                      +.+.|.+.+  .+++|+++++|++|..++++++ |++.+|+++.||.||.+.+.....++.++
T Consensus       223 l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          223 LVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----------
T ss_pred             hHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcc
Confidence            333444433  2689999999999999998876 89999999999999998887766655553

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.48  E-value=1.8e-12  Score=122.97  Aligned_cols=69  Identities=10%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEE---------EEEEeCCeEEEEEcCCCEEecCEEEEcCCCch-HhHh-HhCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVV---------SVEESGLFKLVNLADGAVFKTKVLIGCDGVNS-VVAK-WLGF  170 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~---------~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s-~vr~-~lg~  170 (409)
                      .++...+.+.|.+.+  .+++++++++|+         +++.+++.+.|++.++ +++||.||+|+|.+| .+++ .++.
T Consensus       168 ~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~  246 (405)
T 3c4n_A          168 TYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL  246 (405)
T ss_dssp             EECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence            567778888888765  368999999999         8877767777777666 799999999999999 6777 8877


Q ss_pred             CCC
Q 015331          171 KKP  173 (409)
Q Consensus       171 ~~~  173 (409)
                      ..+
T Consensus       247 ~~~  249 (405)
T 3c4n_A          247 HTR  249 (405)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.45  E-value=1.4e-11  Score=119.25  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=46.0

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .+.+.|.+.+..++|+++++|++|+.++++++|++.+| ++.||.||.|.+.+..
T Consensus       237 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~  290 (475)
T 3lov_A          237 SLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQV  290 (475)
T ss_dssp             HHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHH
T ss_pred             HHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHH
Confidence            46666777765579999999999999999999999999 7999999999997653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.45  E-value=1.3e-12  Score=125.33  Aligned_cols=154  Identities=21%  Similarity=0.213  Sum_probs=94.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc----c---eeEEechhHHHHHHHcCCchHHHhhc-ccc---
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----G---FAITLWTNAWRALDAVGISDSLRQQH-IQL---   72 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~---~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~---   72 (409)
                      ++||+|||||++|+++|+.|+++|.+|+|+|+.+.+...    +   +...-......+++.++....+.... ...   
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            479999999999999999999999999999998764321    0   11100000112222222111110000 000   


Q ss_pred             --------cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe-EEE
Q 015331           73 --------QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF-KLV  141 (409)
Q Consensus        73 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~-~~v  141 (409)
                              .++.+.....+     ..++          ..-....+.+.|.+.+  .+++++++++|+++..+++. +.|
T Consensus       106 ~~~~~~~~~G~~~~~~~~g-----~~~p----------~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V  170 (447)
T 2i0z_A          106 DIITFFENLGVKLKEEDHG-----RMFP----------VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAV  170 (447)
T ss_dssp             HHHHHHHHTTCCEEECGGG-----EEEE----------TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHhcCCceEEeeCC-----EEEC----------CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEE
Confidence                    00001000000     0000          0113456666666544  37899999999999987776 788


Q ss_pred             EEcCCCEEecCEEEEcCCCch-----------HhHhHhCCCC
Q 015331          142 NLADGAVFKTKVLIGCDGVNS-----------VVAKWLGFKK  172 (409)
Q Consensus       142 ~~~~g~~~~ad~vV~AdG~~s-----------~vr~~lg~~~  172 (409)
                      ++.+|++++||.||+|+|.+|           .+++.+|...
T Consensus       171 ~~~~G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          171 ILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             EETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             EECCCCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence            888887899999999999999           7888887753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.45  E-value=6.3e-13  Score=125.42  Aligned_cols=149  Identities=24%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------c-eeEE---echh---------HHHHHHHcCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------G-FAIT---LWTN---------AWRALDAVGI   61 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~-~~~~---~~~~---------~~~~l~~~gl   61 (409)
                      |++++||+|||||++|+++|+.|+++|.+|+|+|+.+.+...      + +...   ..+.         ....+..+..
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCH
Confidence            667899999999999999999999999999999998765211      0 1000   0000         0011111110


Q ss_pred             chH---HHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe-
Q 015331           62 SDS---LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES-  135 (409)
Q Consensus        62 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~-  135 (409)
                      .+.   +...     ++.+.....+.     .++         . . ....+.+.|.+.+.  +++++++++|+++..+ 
T Consensus        81 ~~~~~~~~~~-----Gi~~~~~~~g~-----~~p---------~-~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~  139 (401)
T 2gqf_A           81 WDFISLVAEQ-----GITYHEKELGQ-----LFC---------D-E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQ  139 (401)
T ss_dssp             HHHHHHHHHT-----TCCEEECSTTE-----EEE---------T-T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECC
T ss_pred             HHHHHHHHhC-----CCceEECcCCE-----Ecc---------C-C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEccc
Confidence            000   0011     11111000000     000         0 1 45556666665442  7899999999999876 


Q ss_pred             ---CCeEEEEEcCCCEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331          136 ---GLFKLVNLADGAVFKTKVLIGCDGVNS-----------VVAKWLGFK  171 (409)
Q Consensus       136 ---~~~~~v~~~~g~~~~ad~vV~AdG~~s-----------~vr~~lg~~  171 (409)
                         ++.+.|++.++ +++||.||+|+|.+|           .+.+.+|..
T Consensus       140 ~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~  188 (401)
T 2gqf_A          140 NDEKVRFVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (401)
T ss_dssp             SCSSCCEEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             CcCCCeEEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCC
Confidence               56688888777 799999999999999           456666655

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.45  E-value=3.7e-13  Score=125.22  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+|||||++|+++|+.|+++|++|+|||+.+.+......               .++          .........
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~---------------~~~----------~~~~~~~~~   56 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH---------------AWH----------SLHLFSPAG   56 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG---------------SCT----------TCBCSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC---------------CCC----------CcEecCchh
Confidence            3589999999999999999999999999999998765322110               000          000000000


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG  159 (409)
                      ......+...      ........+..+.+.+.+.+  .+++++++++|++++.+++.+. |++.++ ++.+|.||.|+|
T Consensus        57 ~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG  129 (357)
T 4a9w_A           57 WSSIPGWPMP------ASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATG  129 (357)
T ss_dssp             GSCCSSSCCC------CCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCC
T ss_pred             hhhCCCCCCC------CCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCC
Confidence            0000000111      11112355677777776543  2678999999999999999999 998888 799999999999


Q ss_pred             CchH
Q 015331          160 VNSV  163 (409)
Q Consensus       160 ~~s~  163 (409)
                      .+|.
T Consensus       130 ~~~~  133 (357)
T 4a9w_A          130 TWGE  133 (357)
T ss_dssp             SGGG
T ss_pred             CCCC
Confidence            8773

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.44  E-value=1.4e-12  Score=109.05  Aligned_cols=116  Identities=25%  Similarity=0.343  Sum_probs=85.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+.......                          .+            
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~--------------------------~~------------   43 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVS--------------------------RV------------   43 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCS--------------------------CC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCch--------------------------hh------------
Confidence            6999999999999999999999999999998863211000                          00            


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                        ..  ++..    +   ..+....+.+.+.+.+  .+++++++ +|++++.+++.+.|++.+| ++.+|+||.|+|..+
T Consensus        44 --~~--~~~~----~---~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           44 --PN--YPGL----L---DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             --CC--STTC----T---TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCC
T ss_pred             --hc--cCCC----c---CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCC
Confidence              00  0000    0   0133455666655544  26899999 9999998877888998888 899999999999999


Q ss_pred             HhHhHhCCC
Q 015331          163 VVAKWLGFK  171 (409)
Q Consensus       163 ~vr~~lg~~  171 (409)
                      .+++.+|++
T Consensus       111 ~~~~~~g~~  119 (180)
T 2ywl_A          111 TLPSLLGLT  119 (180)
T ss_dssp             HHHHHHTCC
T ss_pred             CccccCCCC
Confidence            887777654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.44  E-value=4e-12  Score=121.32  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             HHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331          109 LLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      .+.+.|.+.+.  +++|+++++|++|..++++++ |++. |++++||.||.|.|.+... +.+
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~-~ll  257 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATA-VLC  257 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHH-HHT
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHH-Hhc
Confidence            35555555442  689999999999999888876 6664 7789999999999987654 344

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.42  E-value=2e-12  Score=116.35  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=87.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhcccccCe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQLQGM   75 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (409)
                      ++||+|||||++|+++|+.|+++ |.+|+|+|+.+.+....       ....+.....++++++|+.-.           
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~-----------  107 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYD-----------  107 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCE-----------
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcc-----------
Confidence            57999999999999999999997 99999999987653210       112222334445554443210           


Q ss_pred             EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEc-------
Q 015331           76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLA-------  144 (409)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~-------  144 (409)
                         .  .+               .+ ....+...+...|.+.+   .+++++++++|+++..+++.+ .|.+.       
T Consensus       108 ---~--~~---------------~~-~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~  166 (284)
T 1rp0_A          108 ---E--QD---------------TY-VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQN  166 (284)
T ss_dssp             ---E--CS---------------SE-EEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTC
T ss_pred             ---c--CC---------------CE-EEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccc
Confidence               0  00               00 00124556666665543   368999999999999887754 34332       


Q ss_pred             --CC-----CEEecCEEEEcCCCchHhHhH
Q 015331          145 --DG-----AVFKTKVLIGCDGVNSVVAKW  167 (409)
Q Consensus       145 --~g-----~~~~ad~vV~AdG~~s~vr~~  167 (409)
                        ++     .++.||.||+|+|.+|.++..
T Consensus       167 ~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          167 HHTQSCMDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             TTTSSCCCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             cCccccCceEEEECCEEEECCCCchHHHHH
Confidence              22     478999999999999877544

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.42  E-value=1.5e-12  Score=126.78  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCch--HH--Hhhcc-cccCeEEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISD--SL--RQQHI-QLQGMVVA   78 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~--~~~~~-~~~~~~~~   78 (409)
                      ++||+||||||+|+++|+.|++.|++|+|||+.+.+....+      ..........+..  .+  ...+. .+......
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~------~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~  180 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTK------DTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY  180 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHH------HHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCccccccc------chhcccccccccccccceeccCCcccccCCceE
Confidence            37999999999999999999999999999999875421100      0000011100000  00  00000 00000000


Q ss_pred             eccCCccc---------cccccc--ccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEc
Q 015331           79 SSVSCQPA---------SEISFK--TKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLA  144 (409)
Q Consensus        79 ~~~~~~~~---------~~~~~~--~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~  144 (409)
                      ........         .....+  ......+.. .......+.+.|.+.+  .+++++++++|+++..+++.+ .|++.
T Consensus       181 ~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~-G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~  259 (549)
T 3nlc_A          181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHI-GTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS  259 (549)
T ss_dssp             CCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCC-CHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEET
T ss_pred             EEeccccccHHHHHHHHHHcCCCceEeecccccc-ccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEEC
Confidence            00000000         000000  000000010 0123355666665544  378999999999999887754 48899


Q ss_pred             CCCEEecCEEEEcCCCchH----hHhHhCCC
Q 015331          145 DGAVFKTKVLIGCDGVNSV----VAKWLGFK  171 (409)
Q Consensus       145 ~g~~~~ad~vV~AdG~~s~----vr~~lg~~  171 (409)
                      +|+++.||.||+|+|.+|.    ..+..|+.
T Consensus       260 ~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          260 NGEEIKSRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             TSCEEECSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             CCCEEECCEEEECCCCChhhHHHHHHHcCCC
Confidence            9999999999999999994    34455655

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.41  E-value=6.3e-13  Score=122.70  Aligned_cols=124  Identities=18%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|+++|++|+|||+++.+...          .  . ..          .+  ....+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~----------~--~-~~----------~~--~~~~~~~   56 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQ----------L--T-AL----------YP--EKYIYDV   56 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHH----------H--H-HT----------CT--TSEECCS
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCe----------e--e-cc----------CC--Cceeecc
Confidence            345689999999999999999999999999999998753210          0  0 00          00  0001000


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                                 .      ..  ..+.+.++.+.+.+.+.  +++++++++|..++.+++.+.|.+.++.++.+|.||.|+
T Consensus        57 -----------~------~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~At  117 (335)
T 2zbw_A           57 -----------A------GF--PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAA  117 (335)
T ss_dssp             -----------T------TC--SSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECC
T ss_pred             -----------C------CC--CCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECC
Confidence                       0      00  02334556666655432  578899999999998888888999888889999999999


Q ss_pred             CCchHhHhHh
Q 015331          159 GVNSVVAKWL  168 (409)
Q Consensus       159 G~~s~vr~~l  168 (409)
                      |..|...+..
T Consensus       118 G~~~~~p~~~  127 (335)
T 2zbw_A          118 GVGAFEPRRI  127 (335)
T ss_dssp             TTSEEEECCC
T ss_pred             CCCCCCCCCC
Confidence            9976444433

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.41  E-value=2e-12  Score=123.32  Aligned_cols=58  Identities=26%  Similarity=0.330  Sum_probs=44.7

Q ss_pred             HHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHhC
Q 015331          109 LLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLG  169 (409)
Q Consensus       109 ~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  169 (409)
                      .+.+.|.+.+  .+++|+++++|++|+.+++++ | ..+|+++.||.||.|.|.+... +.++
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~-~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETV-KLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHH-HHHC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHH-HhcC
Confidence            4455555544  268999999999999888888 6 5677789999999999987653 4554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.40  E-value=1.7e-11  Score=126.54  Aligned_cols=169  Identities=20%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccC---Ccc--eeEEec-----------hhHHHHHHHcCCch
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLR---VTG--FAITLW-----------TNAWRALDAVGISD   63 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~---~~~--~~~~~~-----------~~~~~~l~~~gl~~   63 (409)
                      |.+++||+|||||++|+++|+.|+++|+ +|+|||++..+.   ..+  .+....           ..+.+.++++.  +
T Consensus         1 m~~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~--~   78 (830)
T 1pj5_A            1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLT--E   78 (830)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCE--E
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHH--h
Confidence            6677999999999999999999999998 999999987531   111  122211           12223333331  0


Q ss_pred             HHHhhcccccCeEEEeccC----------------Cccccccc-------ccccC---C---CCCccccccCHHHHHHHH
Q 015331           64 SLRQQHIQLQGMVVASSVS----------------CQPASEIS-------FKTKG---N---RGGHEVRSVKRSLLMEAL  114 (409)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-------~~~~~---~---~~~~~~~~i~r~~l~~~l  114 (409)
                      .- .......+........                +.....+.       ++...   .   ........++...+...|
T Consensus        79 ~~-~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L  157 (830)
T 1pj5_A           79 DG-VSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLL  157 (830)
T ss_dssp             TT-EESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHH
T ss_pred             hC-CCCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHH
Confidence            00 0000000000000000                00000000       00000   0   000112246777888888


Q ss_pred             HhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEEEEcCCCchHh-HhHhCCCCC
Q 015331          115 EREL--PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKP  173 (409)
Q Consensus       115 ~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~~~  173 (409)
                      .+.+  .+++++.+++|++++.+++.+ .|.+.+| +++||.||+|+|.+|.. .+.+|...+
T Consensus       158 ~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~p  219 (830)
T 1pj5_A          158 IKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVP  219 (830)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCC
T ss_pred             HHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCCcc
Confidence            8765  378999999999999887775 5777777 79999999999999964 455565543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.39  E-value=5.8e-13  Score=124.30  Aligned_cols=122  Identities=15%  Similarity=0.184  Sum_probs=83.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|+++|++|+|||+.+.+...          .   ..+          .+  ....+. 
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~----------~---~~~----------~~--~~~~~~-   64 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQ----------L---AAL----------YP--EKHIYD-   64 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH----------H---HHT----------CT--TSEECC-
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCc----------c---ccc----------CC--Cccccc-
Confidence            445689999999999999999999999999999998753210          0   000          00  000000 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEc
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~A  157 (409)
                                ..        ....+.+..+.+.|.+.+.  +++++++++|+.++..++ .+.|++.++.++.+|.||+|
T Consensus        65 ----------~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~A  126 (360)
T 3ab1_A           65 ----------VA--------GFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIA  126 (360)
T ss_dssp             ----------ST--------TCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEEC
T ss_pred             ----------CC--------CCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEc
Confidence                      00        0001345556666655442  578999999999998765 78899998888999999999


Q ss_pred             CCCchHhHh
Q 015331          158 DGVNSVVAK  166 (409)
Q Consensus       158 dG~~s~vr~  166 (409)
                      +|..|...+
T Consensus       127 tG~~~~~~~  135 (360)
T 3ab1_A          127 AGLGAFEPR  135 (360)
T ss_dssp             CTTCSCCBC
T ss_pred             cCCCcCCCC
Confidence            999765433

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.39  E-value=2.2e-12  Score=117.30  Aligned_cols=132  Identities=22%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCc-------ceeEEechhHHHHHHHcCCchHHHhhcccccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVT-------GFAITLWTNAWRALDAVGISDSLRQQHIQLQG   74 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      ++||+||||||+|+++|+.|+++  |++|+|+|+.+.+...       .....+.+...++|+++|+.-.-         
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~---------  149 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYED---------  149 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEE---------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccc---------
Confidence            58999999999999999999997  9999999998765311       11222345556677766653110         


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCC--------------
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGL--------------  137 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~--------------  137 (409)
                             .+.    +            ....+...+.+.|.+.+   +++++++++.|+++..+++              
T Consensus       150 -------~G~----~------------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~  206 (344)
T 3jsk_A          150 -------EGD----Y------------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAE  206 (344)
T ss_dssp             -------CSS----E------------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC--------------
T ss_pred             -------cCC----e------------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccc
Confidence                   000    0            00112344555555433   4789999999999876542              


Q ss_pred             -----eE-EEEE------c--------CCCEEecCEEEEcCCCchHhHhH
Q 015331          138 -----FK-LVNL------A--------DGAVFKTKVLIGCDGVNSVVAKW  167 (409)
Q Consensus       138 -----~~-~v~~------~--------~g~~~~ad~vV~AdG~~s~vr~~  167 (409)
                           .+ .|.+      .        +..+++|++||+|||..|++++.
T Consensus       207 ~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~  256 (344)
T 3jsk_A          207 DEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAF  256 (344)
T ss_dssp             --CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCH
T ss_pred             cCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHH
Confidence                 21 1222      1        22479999999999999985443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.38  E-value=1.7e-12  Score=113.20  Aligned_cols=128  Identities=15%  Similarity=0.084  Sum_probs=84.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+|||||++|+.+|+.|++.|.+|+|||+.....  +  ....+..      .++.                   .
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~--G--~~~~~~~------~~~~-------------------~   52 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV--M--MPFLPPK------PPFP-------------------P   52 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT--T--CCSSCCC------SCCC-------------------T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC--C--cccCccc------cccc-------------------h
Confidence            36899999999999999999999999999999984311  1  0011100      0000                   0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEEEEcC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~vV~Ad  158 (409)
                      ......+. .  . . .+     ++..+.+.|.+.+   ++++++ +++|+++..+++.+ .|.+.+|.+++||+||.|+
T Consensus        53 ~~~~~~~~-d--~-~-g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~  121 (232)
T 2cul_A           53 GSLLERAY-D--P-K-DE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAV  121 (232)
T ss_dssp             TCHHHHHC-C--T-T-CC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECC
T ss_pred             hhHHhhhc-c--C-C-CC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECC
Confidence            00000000 0  0 0 00     5667777776654   366777 57999998887764 5888888889999999999


Q ss_pred             CCchHhHhHhCC
Q 015331          159 GVNSVVAKWLGF  170 (409)
Q Consensus       159 G~~s~vr~~lg~  170 (409)
                      |.+|..+..+|.
T Consensus       122 G~~s~~~~~~G~  133 (232)
T 2cul_A          122 GSFLGARLFLGG  133 (232)
T ss_dssp             TTCSSCEEEETT
T ss_pred             CCChhhceecCC
Confidence            999877655554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.38  E-value=7.7e-11  Score=114.20  Aligned_cols=54  Identities=11%  Similarity=0.109  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE---cCCCEEecCEEEEcCCCchH
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL---ADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .+.+.|.+.+ +++|+++++|++|+.+++++.|++   .+|++++||.||.|.+....
T Consensus       239 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~  295 (478)
T 2ivd_A          239 VLIDALAASL-GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHAT  295 (478)
T ss_dssp             HHHHHHHHHH-GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHh-hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHH
Confidence            3555565555 468999999999998887888888   67778999999999997753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.37  E-value=2.5e-12  Score=123.55  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhh-cccccC----
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQG----   74 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~----   74 (409)
                      ++.+||+||||||+|+++|..|++.|.  +|+|||+.+.+.....   ......   ..+++....... ..++..    
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~---~~~~~~---~~~~ip~~~~~~~~~~~~~g~~~   77 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN---YTSTLS---NKLPVPSTNPILTTEPIVGPAAL   77 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS---CCSCCC---SCCCSSBCCTTCCCCCBCCSSSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec---CCCCCC---ccccccccccccccccccccccc
Confidence            356899999999999999999999999  9999999875432100   000000   000000000000 000000    


Q ss_pred             ----eEEEeccCCc-ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcC--
Q 015331           75 ----MVVASSVSCQ-PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLAD--  145 (409)
Q Consensus        75 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~--  145 (409)
                          ...+...... ......+...... ......+++..+.++|.+.+.  +..++++++|++++..++.|+|++.+  
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~  156 (447)
T 2gv8_A           78 PVYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK  156 (447)
T ss_dssp             CBCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESS
T ss_pred             CCccCchhhhhccCCCHHHhccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecC
Confidence                0000000000 0000011110000 011124667888887776543  45789999999999998889998876  


Q ss_pred             -CC---EEecCEEEEcCCCchH
Q 015331          146 -GA---VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       146 -g~---~~~ad~vV~AdG~~s~  163 (409)
                       |+   ++.+|.||+|+|.+|.
T Consensus       157 ~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          157 AGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             TTCCEEEEEESEEEECCCSSSS
T ss_pred             CCCeeEEEEeCEEEECCCCCCC
Confidence             66   7999999999999763

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.37  E-value=1.4e-12  Score=128.00  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=91.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-ccCCcceeEEech----hHHHHHHHcCC-chHHHhhcccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-SLRVTGFAITLWT----NAWRALDAVGI-SDSLRQQHIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~----~~~~~l~~~gl-~~~~~~~~~~~~~~~   76 (409)
                      .++||+|||||+||+++|+.|++.|.+|+|+|++. .....+|...+..    ...+.++.++- ...+...    .++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~----~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQ----AGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhh----cccc
Confidence            45899999999999999999999999999999985 3333333222211    12222333321 1111110    1122


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecC
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTK  152 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad  152 (409)
                      +......... ..         ......+++..+.+.|.+.+   +++++ ++++|+++..+++.+ .|.+.+|.++.||
T Consensus       103 f~~l~~~kgp-av---------~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad  171 (651)
T 3ces_A          103 FRILNASKGP-AV---------RATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAK  171 (651)
T ss_dssp             EEEESTTSCG-GG---------CEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEE
T ss_pred             hhhhhcccCc-cc---------ccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECC
Confidence            2111110000 00         00112467777777776654   46787 677999998776654 6888888889999


Q ss_pred             EEEEcCCCchHhHh
Q 015331          153 VLIGCDGVNSVVAK  166 (409)
Q Consensus       153 ~vV~AdG~~s~vr~  166 (409)
                      .||+|+|.+|..+.
T Consensus       172 ~VVLATGt~s~~~~  185 (651)
T 3ces_A          172 AVVLTVGTFLDGKI  185 (651)
T ss_dssp             EEEECCSTTTCCEE
T ss_pred             EEEEcCCCCccCcc
Confidence            99999999875443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.36  E-value=3.5e-12  Score=125.13  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=91.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-ccCCcceeEEech-hHHHHHHHc---C-CchHHHhhcccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-SLRVTGFAITLWT-NAWRALDAV---G-ISDSLRQQHIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~-~~~~~l~~~---g-l~~~~~~~~~~~~~~~   76 (409)
                      .++||+|||||+||+++|+.|++.|.+|+|+|+.. .+...+|...... ....+++++   + +.......    .++.
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~----~gi~   95 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDA----TGIQ   95 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHh----cCCc
Confidence            46899999999999999999999999999999985 2333333222211 112333333   2 11111110    1122


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecC
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTK  152 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad  152 (409)
                      +........          .........+++..+.+.|.+.+   ++++++ +.+|+++..+++.+. |.+.+|.++.||
T Consensus        96 f~~l~~~kg----------pav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad  164 (641)
T 3cp8_A           96 FRMLNRSKG----------PAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAK  164 (641)
T ss_dssp             EEEECSSSC----------TTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEE
T ss_pred             hhhcccccC----------ccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeC
Confidence            211111100          00001122577878887777654   467774 558999988887776 888889899999


Q ss_pred             EEEEcCCCchHh
Q 015331          153 VLIGCDGVNSVV  164 (409)
Q Consensus       153 ~vV~AdG~~s~v  164 (409)
                      .||+|+|.++..
T Consensus       165 ~VVLATG~~s~~  176 (641)
T 3cp8_A          165 AAILACGTFLNG  176 (641)
T ss_dssp             EEEECCTTCBTC
T ss_pred             EEEECcCCCCCc
Confidence            999999988653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.36  E-value=3e-12  Score=119.55  Aligned_cols=38  Identities=29%  Similarity=0.581  Sum_probs=34.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++++||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            45678999999999999999999999999999998753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.36  E-value=7.2e-12  Score=119.81  Aligned_cols=50  Identities=28%  Similarity=0.491  Sum_probs=41.0

Q ss_pred             HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331          110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      +.+.+.+.. + +|+++++|++|+.++++++|++.+|++++||.||.|.|..
T Consensus       209 l~~~~~~~~-g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~  258 (431)
T 3k7m_X          209 LVDAMSQEI-P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMN  258 (431)
T ss_dssp             HHHHHHTTC-S-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGG
T ss_pred             HHHHHHhhC-C-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcc
Confidence            344444443 3 8999999999999888899999999889999999999943

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.36  E-value=9.3e-11  Score=114.85  Aligned_cols=53  Identities=13%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.|.+.+ +++|+++++|+.|+.++++++|++.+|+++.||.||.|.+...
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          216 QVSERIMDLL-GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH-GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHc-CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            3444455444 5689999999999988888999999998999999999999875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.33  E-value=5.2e-12  Score=123.48  Aligned_cols=148  Identities=18%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-ccCCcceeEEec----hhHHHHHHHcC-CchHHHhhcccccCeE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-SLRVTGFAITLW----TNAWRALDAVG-ISDSLRQQHIQLQGMV   76 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~----~~~~~~l~~~g-l~~~~~~~~~~~~~~~   76 (409)
                      .++||+|||||+||+.+|+.|++.|.+|+|+|+.. .....+|...+.    ....+.++.+| ....+...    .++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~----~gi~  101 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ----TGIQ  101 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh----cccc
Confidence            35899999999999999999999999999999985 333333322211    11223333333 22221111    1122


Q ss_pred             EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecC
Q 015331           77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTK  152 (409)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad  152 (409)
                      +........ ...         ......+++..+.+.|.+.+   +++++ ++++|+++..+++.+ .|.+.+|.++.||
T Consensus       102 f~~l~~~kG-pav---------~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ad  170 (637)
T 2zxi_A          102 FKMLNTRKG-KAV---------QSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTK  170 (637)
T ss_dssp             EEEESTTSC-GGG---------CEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECS
T ss_pred             eeecccccC-ccc---------cchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeC
Confidence            211111000 000         00112467777877777654   46787 578999998877665 5888889899999


Q ss_pred             EEEEcCCCchHhH
Q 015331          153 VLIGCDGVNSVVA  165 (409)
Q Consensus       153 ~vV~AdG~~s~vr  165 (409)
                      .||+|+|.++..+
T Consensus       171 aVVLATG~~s~~~  183 (637)
T 2zxi_A          171 AVVVTTGTFLNGV  183 (637)
T ss_dssp             EEEECCTTCBTCE
T ss_pred             EEEEccCCCccCc
Confidence            9999999986543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.33  E-value=6.5e-12  Score=124.12  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc----ceeEEechhHHHHHHHcCCchHHHhhcccc------
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----GFAITLWTNAWRALDAVGISDSLRQQHIQL------   72 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~------   72 (409)
                      .++||+|||||++|+++|+.|+++|.+|+||||.+.+...    +.++.  .......+.+|+.+........+      
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~--~~~~~~~~~~g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMN--AVGTKQQTAHGVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEE--CSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeE--ccCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            3579999999999999999999999999999999865421    12222  21222333444332211100000      


Q ss_pred             -c--------------CeEEEeccCCcccccccccccCCCCCcc----ccccCHHHHHHHHHhhC--CCCeEEeCceEEE
Q 015331           73 -Q--------------GMVVASSVSCQPASEISFKTKGNRGGHE----VRSVKRSLLMEALEREL--PSGTIRYSSKVVS  131 (409)
Q Consensus        73 -~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~  131 (409)
                       .              .+.... ..+.....+... .....+..    ...+....+.+.|.+.+  .+++++++++|++
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~-~~Gv~~~~~~~~-~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~  275 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLE-SLGANLDDLKRS-GGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVK  275 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHH-HTTCCCCEEECC-TTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEE
T ss_pred             CCCHHHHHHHHhccHHHHHHHH-hcCCcccccccc-CCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEE
Confidence             0              000000 000000000000 00000000    00133556777776654  3789999999999


Q ss_pred             EEEeC-CeEE-EEE--cCCC--EEecCEEEEcCCCchHhHhHh
Q 015331          132 VEESG-LFKL-VNL--ADGA--VFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       132 v~~~~-~~~~-v~~--~~g~--~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      +..++ +.+. |.+  .+|+  ++++|.||+|+|.+|..++.+
T Consensus       276 l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          276 LVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             EEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            98876 6432 444  3665  689999999999999765443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.31  E-value=2.1e-11  Score=110.28  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=79.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|..|+++|++|+|||+.+.....                            +  .     ... 
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~----------------------------~--~-----~~~-   45 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF----------------------------A--S-----HSH-   45 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG----------------------------C--S-----CCC-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc----------------------------c--h-----hhc-
Confidence            379999999999999999999999999999986521100                            0  0     000 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                            .+.        ....+....+.+.+.+.+.   ++.+. +++|+.++.+++.+.|.+.+++++.+|.||.|+|.
T Consensus        46 ------~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~  110 (297)
T 3fbs_A           46 ------GFL--------GQDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV  110 (297)
T ss_dssp             ------SST--------TCTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC
T ss_pred             ------CCc--------CCCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC
Confidence                  000        0012445666666666543   34444 56999999998899999999999999999999999


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       111 ~~~~  114 (297)
T 3fbs_A          111 TDEL  114 (297)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            7643

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.29  E-value=8.9e-11  Score=115.81  Aligned_cols=66  Identities=15%  Similarity=-0.023  Sum_probs=48.1

Q ss_pred             cCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe-EEEEEc---CCC--EEecCEEEEcCCCchH-hHhHhCC
Q 015331          105 VKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF-KLVNLA---DGA--VFKTKVLIGCDGVNSV-VAKWLGF  170 (409)
Q Consensus       105 i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~-~~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~lg~  170 (409)
                      ++...+...+.+.+  .+++++.+++|+++..+++. +.|++.   +++  +++||.||+|+|.+|. +++..+.
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            55666666666544  37899999999999988775 346543   343  6899999999999984 4555554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.29  E-value=2.1e-11  Score=120.68  Aligned_cols=158  Identities=13%  Similarity=0.109  Sum_probs=87.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc----ceeEEechhHHHHHHHcCCchHHHhhcccc-------
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----GFAITLWTNAWRALDAVGISDSLRQQHIQL-------   72 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-------   72 (409)
                      ++||+|||||++|+++|+.|+++|.+|+||||.+.+...    +.++...  .....+++|+.+.........       
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~--~~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAA--WTDQQKAKKITDSPELMFEDTMKGGQNI  203 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECS--SCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeC--CCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            579999999999999999999999999999998865321    2222221  112334444332211100000       


Q ss_pred             c--------------CeEEEeccCCcccccccccccCCCCCcccc----ccCHHHHHHHHHhhC--CCCeEEeCceEEEE
Q 015331           73 Q--------------GMVVASSVSCQPASEISFKTKGNRGGHEVR----SVKRSLLMEALEREL--PSGTIRYSSKVVSV  132 (409)
Q Consensus        73 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v  132 (409)
                      .              .+.... ..+.....+... .....+....    ......+.+.|.+.+  .+++++++++|+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~-~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l  281 (571)
T 1y0p_A          204 NDPALVKVLSSHSKDSVDWMT-AMGADLTDVGMM-GGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEV  281 (571)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH-HTTCCCCEEECC-TTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHH-hcCCCCccCccc-CCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEe
Confidence            0              000000 000000000000 0000000000    022456666666654  37899999999999


Q ss_pred             EEeC-CeEE-EEEc--CCC--EEecCEEEEcCCCchHhH
Q 015331          133 EESG-LFKL-VNLA--DGA--VFKTKVLIGCDGVNSVVA  165 (409)
Q Consensus       133 ~~~~-~~~~-v~~~--~g~--~~~ad~vV~AdG~~s~vr  165 (409)
                      ..++ +.+. |.+.  +|+  ++.+|.||+|+|.+|..+
T Consensus       282 ~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~  320 (571)
T 1y0p_A          282 LKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNN  320 (571)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             EEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCH
Confidence            8876 5432 4433  565  689999999999998643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.28  E-value=2.8e-11  Score=110.34  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=79.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +||+||||||+|+++|+.|+++|+ +|+|||++. +...    ....                   .   ..        
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~----~~~~-------------------~---~~--------   46 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQ----ITGS-------------------S---EI--------   46 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCG----GGGC-------------------S---CB--------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcc----cccc-------------------c---cc--------
Confidence            699999999999999999999999 999999852 1110    0000                   0   00        


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                         ..  ++.       ....+++..+.+.+.+.+  .++++++ ++|.+++.+++.+.|.+.++.++.+|.||+|+|.+
T Consensus        47 ---~~--~~~-------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           47 ---EN--YPG-------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             ---CC--STT-------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEE
T ss_pred             ---cc--CCC-------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCC
Confidence               00  000       001356666776665543  2578877 79999998888888988888899999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       114 ~~~  116 (311)
T 2q0l_A          114 PKR  116 (311)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.27  E-value=3e-11  Score=109.19  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCc-------ceeEEechhHHHHHHHcCCchHHHhhcccccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVT-------GFAITLWTNAWRALDAVGISDSLRQQHIQLQG   74 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      ++||+||||||+|+++|+.|+++  |.+|+|+|+.+.+...       .....+.+.....|+++|+.-.          
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~----------  134 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE----------  134 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCE----------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccc----------
Confidence            46999999999999999999998  9999999998765321       1122233444555555543211          


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeC----C--eE-EEEEc
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESG----L--FK-LVNLA  144 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~----~--~~-~v~~~  144 (409)
                          .  .+.                .....+...+...|.+.+   ++++++.+++|+++..++    +  .+ .|.+.
T Consensus       135 ----~--~g~----------------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~  192 (326)
T 2gjc_A          135 ----D--EGD----------------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTN  192 (326)
T ss_dssp             ----E--CSS----------------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEE
T ss_pred             ----c--CCC----------------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEec
Confidence                0  000                000113345566665543   478999999999998763    2  22 23221


Q ss_pred             --------------CCCEEec---------------CEEEEcCCCchHhHhHh
Q 015331          145 --------------DGAVFKT---------------KVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       145 --------------~g~~~~a---------------d~vV~AdG~~s~vr~~l  168 (409)
                                    ++.++.|               ++||+|+|..+++.+++
T Consensus       193 ~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          193 WTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             EHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             ceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                          3346889               99999999998875554

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.26  E-value=1.5e-10  Score=112.18  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=40.7

Q ss_pred             HHHHHHhhCC--CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchH
Q 015331          110 LMEALERELP--SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       110 l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      +.+.|.+.+.  +++|+++++|++|+.++++ +.|++ ++.++.||.||.|.+.+..
T Consensus       236 l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~~~  291 (477)
T 3nks_A          236 LPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASVL  291 (477)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHHHH
Confidence            4555555442  6799999999999988766 88876 4557999999999987543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.26  E-value=3.3e-11  Score=110.29  Aligned_cols=113  Identities=20%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+.++||+||||||+|+++|+.|+++|++|+|||+.. +...   ....                    .   ..     
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~---~~~~--------------------~---~~-----   60 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGL---TAEA--------------------P---LV-----   60 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGG---GGGC--------------------S---CB-----
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCcc---cccc--------------------c---hh-----
Confidence            4456899999999999999999999999999999843 1110   0000                    0   00     


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                            .  .++      ..  ..+.+..+.+.+.+.+.  ++++++ .+|..++.+++.+.|.+ ++.++.+|.||+|+
T Consensus        61 ------~--~~~------~~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~At  122 (319)
T 3cty_A           61 ------E--NYL------GF--KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITT  122 (319)
T ss_dssp             ------C--CBT------TB--SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECC
T ss_pred             ------h--hcC------CC--cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECC
Confidence                  0  000      00  12444555555554332  567777 78999998888888877 56689999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |..+.
T Consensus       123 G~~~~  127 (319)
T 3cty_A          123 GTTHK  127 (319)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.26  E-value=2.3e-11  Score=111.37  Aligned_cols=110  Identities=20%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+|||||++|+++|+.|+++|++|+|||++  +......                            .....     
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~----------------------------~~~~~-----   59 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE----------------------------AGIVD-----   59 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG----------------------------CCEEC-----
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc----------------------------ccccc-----
Confidence            479999999999999999999999999999987  2111000                            00000     


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                            .++      ...  .+....+.+.+.+.+  .++++++ ++|.+++.+++.+.|.+.++.++.+|.||.|+|..
T Consensus        60 ------~~~------~~~--~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           60 ------DYL------GLI--EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             ------CST------TST--TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             ------ccC------CCC--CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence                  000      000  134455666655433  2678888 89999999888899999998899999999999987


Q ss_pred             hH
Q 015331          162 SV  163 (409)
Q Consensus       162 s~  163 (409)
                      +.
T Consensus       125 ~~  126 (323)
T 3f8d_A          125 RR  126 (323)
T ss_dssp             EC
T ss_pred             Cc
Confidence            53

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.25  E-value=4e-10  Score=109.93  Aligned_cols=64  Identities=19%  Similarity=0.318  Sum_probs=47.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCccee------------EEe---chhHHHHHHHcCCchH
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFA------------ITL---WTNAWRALDAVGISDS   64 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~------------~~~---~~~~~~~l~~~gl~~~   64 (409)
                      |.+.+||+|||||++||++|+.|+++|++|+|+|+.+.++.....            ..+   .+...++++++|+.+.
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            445689999999999999999999999999999999875432111            011   2457788899987643

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.25  E-value=5e-11  Score=108.36  Aligned_cols=111  Identities=20%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      |++|||+||||||||+++|+.|+++|++|+|||++...   +.                +..    .   ..+       
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~g---g~----------------~~~----~---~~~-------   50 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNR---NR----------------VTQ----N---SHG-------   50 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCG---GG----------------GSS----C---BCC-------
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC---Ce----------------eee----e---cCC-------
Confidence            46799999999999999999999999999999986421   10                000    0   000       


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEE-eCCeEEEEEcCCCEEecCEEEEcC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEE-SGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~-~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                               +.      ...  .+...++.+...+.+.  +...+....+..+.. .++.++|.+.+++++++|.||.|+
T Consensus        51 ---------~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiAT  113 (304)
T 4fk1_A           51 ---------FI------TRD--GIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLAT  113 (304)
T ss_dssp             ---------ST------TCT--TBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECC
T ss_pred             ---------cc------CCC--CCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEcc
Confidence                     00      000  1233344444333221  233334445555554 445678999999999999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       114 Gs~p  117 (304)
T 4fk1_A          114 GMQE  117 (304)
T ss_dssp             CCEE
T ss_pred             CCcc
Confidence            9754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.25  E-value=2.6e-11  Score=118.63  Aligned_cols=133  Identities=19%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALH-RLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~-~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+|||||++|+++|+.|+ +.|++|+|||+.+.+.....             ..           ...+........
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~-------------~~-----------~ypg~~~d~~s~   63 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY-------------WN-----------RYPGALSDTESH   63 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHH-------------HC-----------CCTTCEEEEEGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccc-------------cc-----------CCCCceecCCcc
Confidence            479999999999999999999 89999999999875432100             00           000110000000


Q ss_pred             CcccccccccccC-CCCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeCC--eEEEEEcCCCEEecCEEE
Q 015331           83 CQPASEISFKTKG-NRGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESGL--FKLVNLADGAVFKTKVLI  155 (409)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~~--~~~v~~~~g~~~~ad~vV  155 (409)
                         ...+.+.... ..........++.++.+.+.+.+.  ++  .++++++|++++.+++  .|+|++.+|+++.||+||
T Consensus        64 ---~~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV  140 (540)
T 3gwf_A           64 ---LYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVV  140 (540)
T ss_dssp             ---GSSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             ---eeeeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEE
Confidence               0000000000 000111124567777777665432  44  8999999999998866  899999999999999999


Q ss_pred             EcCCCchH
Q 015331          156 GCDGVNSV  163 (409)
Q Consensus       156 ~AdG~~s~  163 (409)
                      .|+|..|.
T Consensus       141 ~AtG~~s~  148 (540)
T 3gwf_A          141 NAVGLLSA  148 (540)
T ss_dssp             ECCCSCCS
T ss_pred             ECCccccc
Confidence            99998663

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.25  E-value=1.6e-10  Score=112.40  Aligned_cols=54  Identities=19%  Similarity=0.087  Sum_probs=43.1

Q ss_pred             HHHHHHHhhCC--C-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          109 LLMEALERELP--S-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.|.+.+.  + ++|+++++|++|+.+++.+.|++.+|++++||.||.|.|...
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            34444444432  3 679999999999988888999999998899999999999754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.25  E-value=9.9e-12  Score=114.52  Aligned_cols=117  Identities=18%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|+.|+++|++|+|||+.........+.                  +.     . .....     
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~------------------~~-----~-~~~~~-----   58 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------------LT-----T-TTDVE-----   58 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------------GG-----G-CSEEC-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce------------------ee-----e-ccccc-----
Confidence            4799999999999999999999999999999821100000000                  00     0 00000     


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                            .++.       ....+.+..+.+.|.+.+  .+++++.++ |..++.+++.++|.+ ++.++++|.||+|+|.+
T Consensus        59 ------~~~~-------~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           59 ------NFPG-------FPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             ------CSTT-------CTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             ------cCCC-------CccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence                  0000       001244556666665543  267888886 889988877888887 77789999999999998


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       124 ~~~  126 (333)
T 1vdc_A          124 AKR  126 (333)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.24  E-value=3.4e-11  Score=110.54  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=76.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|+++|++|+|||+.. +...   ....                       ...       
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~---~~~~-----------------------~~~-------   52 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQ---IAWS-----------------------EEV-------   52 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGG---GGGC-----------------------SCB-------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcc---cccc-----------------------ccc-------
Confidence            35799999999999999999999999999999972 2110   0000                       000       


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe--CCe-EEEEEcCCCEEecCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEES--GLF-KLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~--~~~-~~v~~~~g~~~~ad~vV~A  157 (409)
                          .  .++.      .. ..+.+..+.+.+.+.+  .++++++ .+|.+++.+  ++. +.|.+.+|.++.+|.||.|
T Consensus        53 ----~--~~~~------~~-~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~A  118 (325)
T 2q7v_A           53 ----E--NFPG------FP-EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILA  118 (325)
T ss_dssp             ----C--CSTT------CS-SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEEC
T ss_pred             ----c--cCCC------CC-CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEEC
Confidence                0  0000      00 0244555666555433  2678877 589999877  444 7788888889999999999


Q ss_pred             CCCchH
Q 015331          158 DGVNSV  163 (409)
Q Consensus       158 dG~~s~  163 (409)
                      +|..+.
T Consensus       119 tG~~~~  124 (325)
T 2q7v_A          119 TGADPR  124 (325)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            998754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.23  E-value=1.6e-11  Score=113.19  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=79.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+++|+.|+++|++|+|||+.+.......+               .+..         .....    
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg---------------~~~~---------~~~~~----   72 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGG---------------QLTT---------TTEIE----   72 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC---------------GGGG---------SSEEC----
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCc---------------cccc---------chhhc----
Confidence            3579999999999999999999999999999997621111000               0000         00000    


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEc---CCCEEecCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLA---DGAVFKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~~~~ad~vV~A  157 (409)
                             .++.       ....+.+..+.+.+.+.+  .++++++++ |.+++.+++.+.+.+.   ++.++.+|.||.|
T Consensus        73 -------~~~~-------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlA  137 (338)
T 3itj_A           73 -------NFPG-------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILA  137 (338)
T ss_dssp             -------CSTT-------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEEC
T ss_pred             -------ccCC-------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEEC
Confidence                   0000       001244556666665543  268999998 9999988888888884   6678999999999


Q ss_pred             CCCchH
Q 015331          158 DGVNSV  163 (409)
Q Consensus       158 dG~~s~  163 (409)
                      +|..+.
T Consensus       138 tG~~~~  143 (338)
T 3itj_A          138 TGASAK  143 (338)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            998653

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.23  E-value=2e-11  Score=119.92  Aligned_cols=133  Identities=19%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+|||||++|+++|+.|++.|++|+|||+.+.+.....              .+...          +....   ..
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~--------------~~~~p----------g~~~d---~~   68 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY--------------WNRYP----------GARCD---IE   68 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH--------------HCCCT----------TCBCS---SC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc--------------ccCCC----------ceeec---cc
Confidence            57999999999999999999999999999999876532100              00000          00000   00


Q ss_pred             cccccccccccC-CCCCccccccCHHHHHHHHHh---hCC-CCeEEeCceEEEEEEeCC--eEEEEEcCCCEEecCEEEE
Q 015331           84 QPASEISFKTKG-NRGGHEVRSVKRSLLMEALER---ELP-SGTIRYSSKVVSVEESGL--FKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~---~~~-~~~i~~~~~v~~v~~~~~--~~~v~~~~g~~~~ad~vV~  156 (409)
                      .....+.+.... ...........+.++.++|.+   ++. +..++++++|++++.+++  .|+|++.+|++++||+||.
T Consensus        69 ~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~  148 (542)
T 1w4x_A           69 SIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIM  148 (542)
T ss_dssp             TTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEE
T ss_pred             ccccccccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEE
Confidence            000000000000 000001124556777766654   332 357999999999988753  7999999998999999999


Q ss_pred             cCCCchH
Q 015331          157 CDGVNSV  163 (409)
Q Consensus       157 AdG~~s~  163 (409)
                      |+|.+|.
T Consensus       149 AtG~~s~  155 (542)
T 1w4x_A          149 ASGQLSV  155 (542)
T ss_dssp             CCCSCCC
T ss_pred             CcCCCCC
Confidence            9998774

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.23  E-value=3.7e-11  Score=117.84  Aligned_cols=132  Identities=20%  Similarity=0.226  Sum_probs=84.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+|||||++|+++|+.|++.|++|+|||+.+.+...          ...-+.-|+..++...               
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGt----------w~~~~ypg~~~dv~s~---------------   75 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV----------WYWNRYPGARCDVESI---------------   75 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH----------HHHCCCTTCBCSSCTT---------------
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----------cccCCCCCceeCCCch---------------
Confidence            479999999999999999999999999999998754321          0000000110000000               


Q ss_pred             cccccccccccC-CCCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeCC--eEEEEEcCCCEEecCEEEE
Q 015331           84 QPASEISFKTKG-NRGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESGL--FKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~~--~~~v~~~~g~~~~ad~vV~  156 (409)
                        ...+.+.... ..........++.++.+.+.+.+.  ++  .++++++|++++.+++  .|+|++.+|+++.||+||.
T Consensus        76 --~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~  153 (549)
T 4ap3_A           76 --DYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVV  153 (549)
T ss_dssp             --TSSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEE
T ss_pred             --hcccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEE
Confidence              0000000000 000011124566777777665332  33  8999999999988765  7999999999999999999


Q ss_pred             cCCCch
Q 015331          157 CDGVNS  162 (409)
Q Consensus       157 AdG~~s  162 (409)
                      |+|..|
T Consensus       154 AtG~~s  159 (549)
T 4ap3_A          154 AAGPLS  159 (549)
T ss_dssp             CCCSEE
T ss_pred             CcCCCC
Confidence            999765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.21  E-value=4.4e-11  Score=109.51  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|+.|+++|++|+|||+.. +.  +. ..                    ...   ..     
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g~-~~--------------------~~~---~~-----   49 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG--GQ-LT--------------------TTT---EV-----   49 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TT--GG-GG--------------------GCS---BC-----
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CC--ce-Ee--------------------cch---hh-----
Confidence            3456899999999999999999999999999999642 11  10 00                    000   00     


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .     .  ++.       ....+.+..+.+.+.+.+  .++++++++ |..++..++.+++ +.++.++.+|.||.|+
T Consensus        50 -~-----~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~At  112 (320)
T 1trb_A           50 -E-----N--WPG-------DPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIAT  112 (320)
T ss_dssp             -C-----C--STT-------CCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECC
T ss_pred             -h-----h--CCC-------CCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECC
Confidence             0     0  000       000234445555554433  267888886 8889887777888 6778889999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |..+.
T Consensus       113 G~~~~  117 (320)
T 1trb_A          113 GASAR  117 (320)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.21  E-value=5.5e-11  Score=109.64  Aligned_cols=113  Identities=21%  Similarity=0.301  Sum_probs=76.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++++||+||||||+|+++|+.|+++|++|+|||+.. +.  + .+.                    ...   ..      
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g-~~~--------------------~~~---~~------   58 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FG--G-ALM--------------------TTT---DV------   58 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CS--C-GGG--------------------SCS---CB------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CC--C-cee--------------------ccc---hh------
Confidence            346899999999999999999999999999999652 11  1 000                    000   00      


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEE-EEcCCCEEecCEEEEcC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLV-NLADGAVFKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v-~~~~g~~~~ad~vV~Ad  158 (409)
                      .     .  ++       .....+.+..+.+.+.+.+  .++++++++ |.+++. ++.++| .+.++.++.+|.||.|+
T Consensus        59 ~-----~--~~-------~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAt  122 (335)
T 2a87_A           59 E-----N--YP-------GFRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAM  122 (335)
T ss_dssp             C-----C--ST-------TCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECC
T ss_pred             h-----h--cC-------CCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECC
Confidence            0     0  00       0001244555655555433  267888886 888887 566778 78888889999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |..+.
T Consensus       123 G~~~~  127 (335)
T 2a87_A          123 GAAAR  127 (335)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.20  E-value=4.1e-11  Score=110.15  Aligned_cols=114  Identities=21%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      .+||+|||||++|+++|+.|+++|++|+|||+.+.+...          .   ..          ..+  ......    
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~----------~---~~----------~~~--~~~~~~----   57 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQ----------L---SA----------LYP--EKYIYD----   57 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH----------H---HH----------HCT--TSEECC----
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce----------e---hh----------cCC--CceEec----
Confidence            479999999999999999999999999999998753210          0   00          000  001100    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                             +.      ..  ..+...++...+.+.+.  +++++++++|++++..++ .+.|.+.+++ +.+|.||.|+|.
T Consensus        58 -------~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           58 -------VA------GF--PKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             -------ST------TC--SSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             -------cC------CC--CCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence                   00      00  02345666676666543  679999999999998876 7899998886 999999999998


Q ss_pred             ch
Q 015331          161 NS  162 (409)
Q Consensus       161 ~s  162 (409)
                      .+
T Consensus       122 ~~  123 (332)
T 3lzw_A          122 GA  123 (332)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.20  E-value=7e-11  Score=109.72  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC------CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG------IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g------~~V~v~E~~~~   38 (409)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            49999999999999999999998      99999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.19  E-value=4e-11  Score=117.46  Aligned_cols=133  Identities=18%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+|||||++|+++|+.|++.|++|+|||+++.+...          .   .. +..          .+...   ...
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGt----------w---~~-~~y----------Pg~~~---d~~   61 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT----------W---YW-NRY----------PGCRL---DTE   61 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH----------H---HH-CCC----------TTCBC---SSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCc----------c---cc-CCC----------Cceee---cCc
Confidence            579999999999999999999999999999998764321          0   00 000          00000   000


Q ss_pred             cccccccccccC-CCCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEE
Q 015331           84 QPASEISFKTKG-NRGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~  156 (409)
                      .....+.+.... ...........+.++.+.+.+.+.  +.  .++++++|++++.++  +.|+|++.+|++++||+||.
T Consensus        62 ~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~  141 (545)
T 3uox_A           62 SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLIS  141 (545)
T ss_dssp             HHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEE
T ss_pred             hhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEE
Confidence            000000000000 000111124556667666655332  33  789999999998765  47999999998999999999


Q ss_pred             cCCCchH
Q 015331          157 CDGVNSV  163 (409)
Q Consensus       157 AdG~~s~  163 (409)
                      |+|..|.
T Consensus       142 AtG~~s~  148 (545)
T 3uox_A          142 ATGPLSA  148 (545)
T ss_dssp             CCCSCBC
T ss_pred             CcCCCCC
Confidence            9997653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.19  E-value=6.4e-11  Score=108.06  Aligned_cols=119  Identities=21%  Similarity=0.238  Sum_probs=75.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++.|||+||||||||+++|+.|+++|++|+|||+.........+                  .+     +. ...+...
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G------------------~~-----~~-~~~i~~~   56 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGG------------------QL-----TT-TTIIENF   56 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTC------------------GG-----GG-SSEECCS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCC------------------Cc-----CC-hHHhhhc
Confidence            888899999999999999999999999999999987532111000                  00     00 0001000


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                       .       .++          ..+...++.+.+.+.+.  +..+. ...+.......+...+.+.++.++.+|.||.|+
T Consensus        57 -~-------g~~----------~~i~~~~l~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiAT  117 (314)
T 4a5l_A           57 -P-------GFP----------NGIDGNELMMNMRTQSEKYGTTII-TETIDHVDFSTQPFKLFTEEGKEVLTKSVIIAT  117 (314)
T ss_dssp             -T-------TCT----------TCEEHHHHHHHHHHHHHHTTCEEE-CCCEEEEECSSSSEEEEETTCCEEEEEEEEECC
T ss_pred             -c-------CCc----------ccCCHHHHHHHHHHHHhhcCcEEE-EeEEEEeecCCCceEEEECCCeEEEEeEEEEcc
Confidence             0       000          02334445444443331  34444 445666666667777888888899999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       118 G~~~  121 (314)
T 4a5l_A          118 GATA  121 (314)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            9754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.19  E-value=9e-11  Score=113.02  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCc---eEEEeCCCccCCcceeEEechh-HHHHHHHcCCchHHHhhcccccCeEE
Q 015331            5 EDIVIVGAGIAGLTTSLALHR---LGIR---SLVLESSESLRVTGFAITLWTN-AWRALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~---~g~~---V~v~E~~~~~~~~~~~~~~~~~-~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      +||+||||||+|+++|..|++   .|++   |+|||+.+.++....   .... +   ....|+..    ..........
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~---~~~~~g---~~~~g~~~----~~~~y~~l~~   72 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN---YTWRTG---LDENGEPV----HSSMYRYLWS   72 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS---CCSCCS---BCTTSSBC----CCCCCTTCBC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee---cCCCCC---ccccCCCC----cCccccchhh
Confidence            699999999999999999999   9999   999999876432100   0000 0   00001000    0000000000


Q ss_pred             EeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCe--EEeCceEEEEEEeCC--eEEEEEcC---C--
Q 015331           78 ASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGT--IRYSSKVVSVEESGL--FKLVNLAD---G--  146 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~--i~~~~~v~~v~~~~~--~~~v~~~~---g--  146 (409)
                      ...........+.++....  ......+++..+.+.|.+.+.  ++.  ++++++|+.++..++  .|+|++.+   |  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~  150 (464)
T 2xve_A           73 NGPKECLEFADYTFDEHFG--KPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTI  150 (464)
T ss_dssp             SSCGGGTCBTTBCHHHHHS--SCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             cCChhhcccCCCCCCcccC--CCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCce
Confidence            0000000000111110000  001224677888877776543  455  899999999998876  78888765   3  


Q ss_pred             CEEecCEEEEcCCCchH
Q 015331          147 AVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       147 ~~~~ad~vV~AdG~~s~  163 (409)
                      .++.+|.||+|+|.+|.
T Consensus       151 ~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          151 YSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             EEEEESEEEECCCSSSS
T ss_pred             EEEEcCEEEECCCCCCC
Confidence            46899999999997654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.18  E-value=9.3e-11  Score=109.57  Aligned_cols=135  Identities=13%  Similarity=0.195  Sum_probs=80.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+|||||++|+++|+.|++.|+ +|+|||+++ +...             +...  ...    ....... +....-
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~-------------~~~~--~~~----~~~~~~~-~~~~~~   62 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHS-------------FKHW--PKS----TRTITPS-FTSNGF   62 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHH-------------HHTS--CTT----CBCSSCC-CCCGGG
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCc-------------cccC--ccc----ccccCcc-hhcccC
Confidence            5899999999999999999999999 999999886 2210             0000  000    0000000 000000


Q ss_pred             CcccccccccccCCCC--CccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           83 CQPASEISFKTKGNRG--GHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                      +.  ..+.........  ......+.+..+.+.+.+.+  .+++++++++|.+++.+++.+.|.+.++ ++.+|.||.|+
T Consensus        63 g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAt  139 (369)
T 3d1c_A           63 GM--PDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVAT  139 (369)
T ss_dssp             TC--CCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECC
T ss_pred             Cc--hhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECC
Confidence            00  000000000000  00011345556666554432  2688999999999998877888988877 58999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |.++
T Consensus       140 G~~~  143 (369)
T 3d1c_A          140 GDYN  143 (369)
T ss_dssp             CSTT
T ss_pred             CCCC
Confidence            9876

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.16  E-value=3e-10  Score=115.22  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=42.2

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+   +++|+++++|++|+.++++++|++.+|+++.||.||.|....
T Consensus       535 ~l~~aLa~---gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~  584 (776)
T 4gut_A          535 VIIEKLAE---GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA  584 (776)
T ss_dssp             HHHHHHHT---TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHH
T ss_pred             HHHHHHHh---CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHH
Confidence            45555554   568999999999999988999999999899999999999643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.14  E-value=3.2e-10  Score=110.55  Aligned_cols=38  Identities=37%  Similarity=0.594  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .++||||||||++||++|+.|+++|.+|+|+||.+.+.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~G   77 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWG   77 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35799999999999999999999999999999998653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.13  E-value=1.3e-10  Score=105.74  Aligned_cols=111  Identities=23%  Similarity=0.299  Sum_probs=76.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+||||||+|+++|..|+++|++|+|+|+...    +.  ..              .          .....   . 
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~g----G~--~~--------------~----------~~~~~---~-   46 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG----GQ--IL--------------D----------TVDIE---N-   46 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT----GG--GG--------------G----------CCEEC---C-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC----ce--ec--------------c----------ccccc---c-
Confidence            47999999999999999999999999999985321    10  00              0          00000   0 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeC---CeEEEEEcCCCEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESG---LFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~---~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                             +.        ......+..+.+.+.+.+  .+++++++++|..++.+.   +.+.|.+.++.++.+|.||.|+
T Consensus        47 -------~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~At  111 (310)
T 1fl2_A           47 -------YI--------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVAT  111 (310)
T ss_dssp             -------BT--------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECC
T ss_pred             -------cc--------CcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECc
Confidence                   00        000123445555554433  267899999999997653   3688999888889999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |..+.
T Consensus       112 G~~~~  116 (310)
T 1fl2_A          112 GAKWR  116 (310)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.12  E-value=4.4e-10  Score=108.43  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=82.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-----CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-----IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-----~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      .+||+||||||+|+++|..|+++|     .+|+|||+.+.+..... ..+....+.    .....++.....+.....+.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~-~~~~~~~~~----~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGN-TLVSQSELQ----ISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGG-GCCSSCBCS----SCTTSSSSTTTCTTCTTSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCC-CCCCCCcCC----cchhhccccccCCCCCCChh
Confidence            469999999999999999999999     99999999986542110 000000000    00000000000000000000


Q ss_pred             e--ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe---CCe--EEEEEcCCC--
Q 015331           79 S--SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES---GLF--KLVNLADGA--  147 (409)
Q Consensus        79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~---~~~--~~v~~~~g~--  147 (409)
                      .  ...+.   ...+.      ........+..+.+++...+.  ++.++++++|++++..   ++.  ++|++.++.  
T Consensus       105 ~~l~~~~~---~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~  175 (463)
T 3s5w_A          105 NYLHKHDR---LVDFI------NLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGE  175 (463)
T ss_dssp             HHHHHTTC---HHHHH------HHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSC
T ss_pred             HhhhhcCc---eeecc------cccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCc
Confidence            0  00000   00000      001123567777777765443  4789999999999876   444  367777775  


Q ss_pred             --EEecCEEEEcCCCchH
Q 015331          148 --VFKTKVLIGCDGVNSV  163 (409)
Q Consensus       148 --~~~ad~vV~AdG~~s~  163 (409)
                        ++.+|.||+|+|..+.
T Consensus       176 ~~~~~~d~lVlAtG~~p~  193 (463)
T 3s5w_A          176 ELVRTTRALVVSPGGTPR  193 (463)
T ss_dssp             EEEEEESEEEECCCCEEC
T ss_pred             eEEEEeCEEEECCCCCCC
Confidence              8999999999998543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.05  E-value=2.1e-09  Score=106.58  Aligned_cols=162  Identities=12%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCc----ceeEE--ech-hHH-----HHHHHc-CCc-hHH-
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT----GFAIT--LWT-NAW-----RALDAV-GIS-DSL-   65 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~----~~~~~--~~~-~~~-----~~l~~~-gl~-~~~-   65 (409)
                      .++||+|||||++|+++|+.|+++|  .+|+|+||.+.....    ..++.  +.. .+.     +.++.- ++. ..+ 
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            3589999999999999999999999  999999998654221    11221  110 111     111111 111 010 


Q ss_pred             ---Hhhc-cc-----ccCeEEEeccCCcccccccccccCCCCCccccc---cCHHHHHHHHHhhCC--C-CeEEeCceEE
Q 015331           66 ---RQQH-IQ-----LQGMVVASSVSCQPASEISFKTKGNRGGHEVRS---VKRSLLMEALERELP--S-GTIRYSSKVV  130 (409)
Q Consensus        66 ---~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~l~~~~~--~-~~i~~~~~v~  130 (409)
                         .... ..     -.++.+.....+.    +.....+.........   .....+...|.+.+.  + +++++++.|+
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~----~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~  159 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGS----VNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVL  159 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSS----BCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCc----ccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEE
Confidence               0000 00     0011111101110    0000000000000000   012466777776542  4 8999999999


Q ss_pred             EEEEeCCeE---EEE-EcCCC--EEecCEEEEcCCCchHhHhHh
Q 015331          131 SVEESGLFK---LVN-LADGA--VFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       131 ~v~~~~~~~---~v~-~~~g~--~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      ++..+++.+   .+. +.+|+  ++.|+.||+|+|.+|.++...
T Consensus       160 ~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          160 DILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             EEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             EEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            998877643   222 25665  689999999999999885443

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.05  E-value=6e-10  Score=110.03  Aligned_cols=37  Identities=30%  Similarity=0.528  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+||+|||||++|+++|+.|+++|.+|+|+|+.+.+.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~  162 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG  162 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4699999999999999999999999999999988653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.03  E-value=3.7e-10  Score=102.95  Aligned_cols=37  Identities=38%  Similarity=0.630  Sum_probs=32.8

Q ss_pred             CCC-CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEE-DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~-~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++ +|||+||||||||+++|+.|+++|++|+|||+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            764 7999999999999999999999999999999854

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.03  E-value=1e-09  Score=107.18  Aligned_cols=112  Identities=25%  Similarity=0.336  Sum_probs=77.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+...    +.  ..        ...              .+.      
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~G----G~--~~--------~~~--------------~~~------  256 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFG----GQ--VL--------DTV--------------DIE------  256 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTT----GG--GT--------TCS--------------CBC------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC----Cc--cc--------ccc--------------ccc------
Confidence            367999999999999999999999999999986321    10  00        000              000      


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe---CCeEEEEEcCCCEEecCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEES---GLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~---~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                           .  +.        .........+.+.+.+.+  .+++++.+++|..++.+   ++.+.|.+.+|.++.+|.||.|
T Consensus       257 -----~--~~--------~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlA  321 (521)
T 1hyu_A          257 -----N--YI--------SVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIA  321 (521)
T ss_dssp             -----C--BT--------TBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEEC
T ss_pred             -----c--cC--------CCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEEC
Confidence                 0  00        000134455656555443  26899999999999764   2368899999989999999999


Q ss_pred             CCCchH
Q 015331          158 DGVNSV  163 (409)
Q Consensus       158 dG~~s~  163 (409)
                      +|..+.
T Consensus       322 tG~~~~  327 (521)
T 1hyu_A          322 TGAKWR  327 (521)
T ss_dssp             CCEEEC
T ss_pred             CCCCcC
Confidence            998753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.02  E-value=1.4e-09  Score=106.39  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhCCCCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          107 RSLLMEALERELPSGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       107 r~~l~~~l~~~~~~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      -..+.+.|.+.+++.+|+++++|+.|..+ ++.+.|++.+|++++||.||.|.+...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~  257 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSV  257 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHH
Confidence            45566667666666689999999999986 667999999998899999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.01  E-value=3.2e-09  Score=96.62  Aligned_cols=111  Identities=20%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEE-EeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLV-LESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v-~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +++||+||||||+|+++|..|+++|++|+| +|+ +.+...   ..                    ...   ..      
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~---~~--------------------~~~---~~------   49 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQ---IT--------------------SSS---EI------   49 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGG---GG--------------------GCS---CB------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCce---ee--------------------eec---ee------
Confidence            457999999999999999999999999999 998 332110   00                    000   00      


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEEc
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~A  157 (409)
                           .  .++       .....+...++...+.+.+.  +++++++ +|..+ .++  +.+.++...+.++.+|.||.|
T Consensus        50 -----~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlA  113 (315)
T 3r9u_A           50 -----E--NYP-------GVAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVC  113 (315)
T ss_dssp             -----C--CST-------TCCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEEC
T ss_pred             -----c--cCC-------CCCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEe
Confidence                 0  000       00012455667676665443  5788888 89899 776  678853332228999999999


Q ss_pred             CCCch
Q 015331          158 DGVNS  162 (409)
Q Consensus       158 dG~~s  162 (409)
                      +|...
T Consensus       114 tG~~~  118 (315)
T 3r9u_A          114 TGSAP  118 (315)
T ss_dssp             CCEEE
T ss_pred             eCCCC
Confidence            99754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.01  E-value=6.8e-10  Score=108.71  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++||++|+.|++ |.+|+|+||.+..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            5899999999999999999999 9999999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.01  E-value=3.2e-09  Score=103.05  Aligned_cols=54  Identities=13%  Similarity=0.128  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCCc
Q 015331          108 SLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGVN  161 (409)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~  161 (409)
                      ..|.+.|.+.++.++|+++++|+.|+.++++++|++.+|   ++++||.||.|....
T Consensus       239 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            456667777664478999999999999999999998876   579999999999865

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.00  E-value=2.6e-10  Score=110.51  Aligned_cols=39  Identities=23%  Similarity=0.529  Sum_probs=35.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+.++||+|||||++|+++|..|++.|++|+|||+++.+
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            555789999999999999999999999999999997654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.00  E-value=4.5e-10  Score=108.77  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |++++||+||||||+|+++|..|+++|++|+|||+.+.++......+. ..+..++...++++.+.... ...++...  
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~-~psk~l~~~~~~~~~~~~~~-~~~gi~~~--   77 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGC-IPSKALLNNSHLFHQMHTEA-QKRGIDVN--   77 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSH-HHHHHHHHHHHHHHHHHHTS-GGGTEEEC--
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceecc-HHHHHHHHHHHHHHHHHHHH-HhcCcccC--
Confidence            556789999999999999999999999999999997654211000000 11333333333333332111 11122210  


Q ss_pred             cCCcccccccccccCCCCCccccccC--HHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC--CE------Ee
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVK--RSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG--AV------FK  150 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~--r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~------~~  150 (409)
                       ..   ..+++....   .+....+.  +..+.+.+. . .+++++.++.+..   +++.++|.+.+|  .+      +.
T Consensus        78 -~~---~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~-~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~  145 (478)
T 1v59_A           78 -GD---IKINVANFQ---KAKDDAVKQLTGGIELLFK-K-NKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILD  145 (478)
T ss_dssp             -SC---EEECHHHHH---HHHHHHHHHHHHHHHHHHH-H-TTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEE
T ss_pred             -CC---CccCHHHHH---HHHHHHHHHHHHHHHHHHH-h-CCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEE
Confidence             00   011111000   00000000  011222222 2 3788988887652   556788887777  56      99


Q ss_pred             cCEEEEcCCCch
Q 015331          151 TKVLIGCDGVNS  162 (409)
Q Consensus       151 ad~vV~AdG~~s  162 (409)
                      +|.||+|+|..+
T Consensus       146 ~d~lViAtGs~p  157 (478)
T 1v59_A          146 VKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEECCCEEE
T ss_pred             eCEEEECcCCCC
Confidence            999999999876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.00  E-value=1.4e-09  Score=103.63  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=73.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |++++||+|||||++|+++|..|++.|.  +|+|||+.+.......     +          +...+.      .     
T Consensus         1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-----~----------l~~~~~------~-----   54 (431)
T 1q1r_A            1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-----P----------LSKAYL------A-----   54 (431)
T ss_dssp             -CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-----G----------GGTTTT------T-----
T ss_pred             CCCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-----C----------CcHHHh------C-----
Confidence            6667899999999999999999999998  7999998764211000     0          000000      0     


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                         .......+              .+.   +.+.+.+  .+++++.+++|+.++..+.  +|.+.+|+++.+|.||.|+
T Consensus        55 ---~~~~~~~~--------------~~~---~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAt  110 (431)
T 1q1r_A           55 ---GKATAESL--------------YLR---TPDAYAA--QNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLAT  110 (431)
T ss_dssp             ---TCSCSGGG--------------BSS---CHHHHHH--TTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECC
T ss_pred             ---CCCChHHh--------------ccc---CHHHHHh--CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcC
Confidence               00000000              010   1122222  2689999999999987654  5667788889999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |..+..
T Consensus       111 G~~p~~  116 (431)
T 1q1r_A          111 GGRPRP  116 (431)
T ss_dssp             CEEECC
T ss_pred             CCCccC
Confidence            987643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.98  E-value=1.2e-09  Score=105.47  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      +.++||+||||||+|+++|..|++.|++|+|||+.+.+..........| +..++....+.+.+.... ...++...   
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p-~k~l~~~~~~~~~~~~~~-~~~g~~~~---   78 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIP-SKALLHSSHMYHEAKHSF-ANHGVKVS---   78 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHH-HHHHHHHHHHHHHHHHTH-HHHTEEES---
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccc-hHHHHHHHHHHHHHHHHH-HhcCcccC---
Confidence            3568999999999999999999999999999999875432210000011 112222111112211100 00011110   


Q ss_pred             CCcccccccccccCCCCCccccccCH-----HHH----HHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC--CEEe
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKR-----SLL----MEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG--AVFK  150 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r-----~~l----~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~  150 (409)
                      .    ...++..          .+.+     ..+    .+.+.+.  +++++.++.+.   .+.+.+.|.+.+|  .+++
T Consensus        79 ~----~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~--gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~  139 (470)
T 1dxl_A           79 N----VEIDLAA----------MMGQKDKAVSNLTRGIEGLFKKN--KVTYVKGYGKF---VSPSEISVDTIEGENTVVK  139 (470)
T ss_dssp             C----EEECHHH----------HHHHHHHHHHHHHHHHHHHHHHH--TCEEEESCEEE---EETTEEEECCSSSCCEEEE
T ss_pred             C----CccCHHH----------HHHHHHHHHHHHHHHHHHHHHhC--CCEEEEeEEEE---ecCCEEEEEeCCCceEEEE
Confidence            0    0001100          1111     112    2222222  68898888654   3556788887777  6799


Q ss_pred             cCEEEEcCCCchHhHhHhC
Q 015331          151 TKVLIGCDGVNSVVAKWLG  169 (409)
Q Consensus       151 ad~vV~AdG~~s~vr~~lg  169 (409)
                      +|.||+|+|..+.+....|
T Consensus       140 ~d~lIiAtGs~p~~p~~~g  158 (470)
T 1dxl_A          140 GKHIIIATGSDVKSLPGVT  158 (470)
T ss_dssp             CSEEEECCCEEECCBTTBC
T ss_pred             cCEEEECCCCCCCCCCCCC
Confidence            9999999998775443333

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.96  E-value=8e-09  Score=99.21  Aligned_cols=51  Identities=10%  Similarity=-0.019  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCc
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+.+ +++|+++++|++|..++++ +.|++ ++.++.||.||.|.+..
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          216 QVSIRMAEAL-GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN  267 (453)
T ss_dssp             HHHHHHHHHH-GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred             HHHHHHHHhc-CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence            4445555554 5789999999999998888 88876 67789999999999976

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.96  E-value=3.1e-09  Score=102.92  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      +++++.+++|.+++.+++.+.|.+.+|+++.+|.||.|.|..+..
T Consensus       246 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             TCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            789999999999999888889999999899999999999987654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.96  E-value=3.5e-09  Score=102.01  Aligned_cols=58  Identities=14%  Similarity=-0.028  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEc-CCCEEecCEEEEcCCCchHhHh
Q 015331          108 SLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLA-DGAVFKTKVLIGCDGVNSVVAK  166 (409)
Q Consensus       108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~-~g~~~~ad~vV~AdG~~s~vr~  166 (409)
                      ..+.+.|.+.+  .+++++.+++| ++..+++.+. +... ++.++.+|.||.|+|.+|.+..
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~  180 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYE  180 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSS
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCc
Confidence            45556665543  37899999999 9987777552 3332 2235789999999999997754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.95  E-value=8.5e-09  Score=102.91  Aligned_cols=37  Identities=27%  Similarity=0.495  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||||||||++||++|+.|+++|.+|+|+||.+..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            4689999999999999999999999999999998754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.93  E-value=2.9e-09  Score=102.67  Aligned_cols=40  Identities=28%  Similarity=0.420  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |++++||+||||||+|+++|..|++.|++|+|||+++.++
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG   40 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            7778999999999999999999999999999999877543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.92  E-value=6.7e-09  Score=102.88  Aligned_cols=57  Identities=14%  Similarity=-0.013  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEE---cCCC--EEecCEEEEcCCCchHh
Q 015331          108 SLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNL---ADGA--VFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~---~~g~--~~~ad~vV~AdG~~s~v  164 (409)
                      ..+...|.+.+  .++++++++.|+++..+++.+. |..   .+|+  .+.|+.||.|+|.++.+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            46777777654  3689999999999987766532 333   4565  68999999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.92  E-value=3.1e-09  Score=103.78  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331          108 SLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL  168 (409)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  168 (409)
                      ..+.+.|.+.++  +++++++++|+.|..+++.  +++.+|+++.||.||.+.-.. .+.+.+
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~-~l~~~l  281 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVD-FLAEAM  281 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHH-HHHHHT
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHH-HHHHhc
Confidence            456667777665  5689999999999887764  567899999999999765543 333433

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.91  E-value=4.1e-10  Score=108.57  Aligned_cols=144  Identities=14%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      |+ ++||+||||||+|+++|..|++.|++|+|||+.. .......... ..+..++...++++.+...... .++.  . 
T Consensus         1 M~-~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~-~psk~ll~~~~~~~~~~~~~~~-~g~~--~-   73 (464)
T 2a8x_A            1 MT-HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGC-IPSKALLRNAELVHIFTKDAKA-FGIS--G-   73 (464)
T ss_dssp             CE-EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSH-HHHHHHHHHHHHHHHHHHHTTT-TTEE--E-
T ss_pred             CC-cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCc-hhhHHHHHHHHHHHHHHHHHHh-cCCC--C-
Confidence            53 5899999999999999999999999999999873 2110000000 1133334433333333211111 1111  0 


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEE
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIG  156 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~  156 (409)
                       .    ...++.....   .....+  ..+.+.+.+.+  .+++++.++.+.   .+++.++|.+.+|  .++.+|.||+
T Consensus        74 -~----~~~~~~~~~~---~~~~~~--~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lVi  140 (464)
T 2a8x_A           74 -E----VTFDYGIAYD---RSRKVA--EGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAII  140 (464)
T ss_dssp             -C----CEECHHHHHH---HHHHHH--HHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEE
T ss_pred             -C----CccCHHHHHH---HHHHHH--HHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEE
Confidence             0    0111110000   000000  12222222211  368888877653   3556788888887  6799999999


Q ss_pred             cCCCchHh
Q 015331          157 CDGVNSVV  164 (409)
Q Consensus       157 AdG~~s~v  164 (409)
                      |+|..+.+
T Consensus       141 AtG~~~~~  148 (464)
T 2a8x_A          141 ATGSSTRL  148 (464)
T ss_dssp             CCCEEECC
T ss_pred             CCCCCCCC
Confidence            99998754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.91  E-value=2.5e-08  Score=94.93  Aligned_cols=53  Identities=11%  Similarity=0.094  Sum_probs=41.6

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                      .+.+.|.+.+ +.+++++++|++|+.++++++|++.+|+ ++||.||.|.+....
T Consensus       207 ~l~~~l~~~l-~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~~~  259 (424)
T 2b9w_A          207 AMFEHLNATL-EHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEKF  259 (424)
T ss_dssp             HHHHHHHHHS-SSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHHHH
T ss_pred             HHHHHHHHhh-cceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHHHH
Confidence            3444555555 3478899999999988888989888875 899999999998643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.91  E-value=2.4e-08  Score=98.71  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+|||||++|+++|+.|+++|.+|+|+||.+..
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            579999999999999999999999999999998754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.86  E-value=1.4e-09  Score=104.00  Aligned_cols=111  Identities=16%  Similarity=0.257  Sum_probs=72.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      |....||+|||||++|+++|..|++   .|++|+|||+++....       .+.......  |.                
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~~~~~~~--g~----------------   55 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPSNPWVGV--GW----------------   55 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGGHHHHHH--TS----------------
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCCcccccc--Cc----------------
Confidence            6666799999999999999999999   8999999998874211       110000000  00                


Q ss_pred             EeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           78 ASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                            .....+.              .   .+.+.+.+  .+++++ ..+|+.++.++.  +|++.++.++.+|.||.|
T Consensus        56 ------~~~~~~~--------------~---~l~~~~~~--~gv~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviA  107 (437)
T 3sx6_A           56 ------KERDDIA--------------F---PIRHYVER--KGIHFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIA  107 (437)
T ss_dssp             ------SCHHHHE--------------E---ECHHHHHT--TTCEEE-CSCEEEEETTTT--EEEETTSCEEECSEEEEC
T ss_pred             ------cCHHHHH--------------H---HHHHHHHH--CCCEEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEEC
Confidence                  0000000              0   01222222  267776 468988886655  677788888999999999


Q ss_pred             CCCchHh
Q 015331          158 DGVNSVV  164 (409)
Q Consensus       158 dG~~s~v  164 (409)
                      +|..+..
T Consensus       108 tG~~~~~  114 (437)
T 3sx6_A          108 TGPKLAF  114 (437)
T ss_dssp             CCCEECG
T ss_pred             CCCCcCc
Confidence            9987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.85  E-value=6.9e-09  Score=100.19  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+ ++||+|||||++|+++|..|+++  |.+|+|||+++.+....++               +...+        .....
T Consensus         1 M~-~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~g---------------l~~~~--------~g~~~   56 (472)
T 3iwa_A            1 MS-LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCG---------------IPYYV--------SGEVS   56 (472)
T ss_dssp             ----CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC------------------------------------------
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccc---------------cchhh--------cCCCC
Confidence            54 57999999999999999999998  9999999998864321111               10000        00000


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEE
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLI  155 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV  155 (409)
                         ......  ++.            .......+.+.+. .+++++++++|+.++..+..+.+.. .+|.  ++.+|.||
T Consensus        57 ---~~~~~~--~~~------------~~~~~~~~~~~~~-~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lv  118 (472)
T 3iwa_A           57 ---NIESLQ--ATP------------YNVVRDPEFFRIN-KDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLV  118 (472)
T ss_dssp             ------------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEE
T ss_pred             ---chHHhc--ccc------------chhccCHHHHhhh-cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEE
Confidence               000000  000            0000011112211 2678899999999998888777765 3354  78999999


Q ss_pred             EcCCCch
Q 015331          156 GCDGVNS  162 (409)
Q Consensus       156 ~AdG~~s  162 (409)
                      .|+|...
T Consensus       119 iAtG~~p  125 (472)
T 3iwa_A          119 LALGSKA  125 (472)
T ss_dssp             ECCCEEE
T ss_pred             EeCCCCc
Confidence            9999753

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.83  E-value=1.7e-08  Score=96.16  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |.+.+||+|||+|++|+++|+.|+++|.+|+|+|+++..
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            556789999999999999999999999999999999754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.83  E-value=8.7e-09  Score=98.93  Aligned_cols=110  Identities=15%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|+++  |.+|+|||+.+.+....++....      +.                 ....   .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~------~~-----------------~~~~---~   56 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY------FN-----------------HTIN---E   56 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh------hc-----------------CCCC---C
Confidence            6999999999999999999998  89999999988543221111000      00                 0000   0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCCEEecCEEEEcCCCc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~~~~ad~vV~AdG~~  161 (409)
                         ...+.             .....    .+.+  .+++++++++|+.++..++.+.+.. .++.++.+|.||.|+|..
T Consensus        57 ---~~~~~-------------~~~~~----~~~~--~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           57 ---LHEAR-------------YITEE----ELRR--QKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGAS  114 (452)
T ss_dssp             -------C-------------CCCHH----HHHH--TTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCC
T ss_pred             ---HHHhh-------------cCCHH----HHHH--CCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcc
Confidence               00000             00111    2222  2678889999999998888777752 244579999999999985


Q ss_pred             h
Q 015331          162 S  162 (409)
Q Consensus       162 s  162 (409)
                      .
T Consensus       115 p  115 (452)
T 3oc4_A          115 Q  115 (452)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.83  E-value=1.3e-08  Score=97.72  Aligned_cols=111  Identities=19%  Similarity=0.278  Sum_probs=67.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+ ++||+|||||++|+++|..|++.  |.+|+|||+.+......++.               ..             +.
T Consensus         1 M~-~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~---------------p~-------------~~   51 (449)
T 3kd9_A            1 MS-LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGI---------------PY-------------VV   51 (449)
T ss_dssp             -C-CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--------------------------------------
T ss_pred             CC-cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCC---------------cc-------------cc
Confidence            54 57999999999999999999998  88999999987542211110               00             00


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEc
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGC  157 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~A  157 (409)
                         .+..    ...        .  .+.+  ..+.+.++ .+++++++++|+.++..  .+.|.+.++ .++.+|.||.|
T Consensus        52 ---~~~~----~~~--------~--~~~~--~~~~~~~~-~gi~v~~~~~v~~i~~~--~~~v~~~~g~~~~~~d~lviA  109 (449)
T 3kd9_A           52 ---EGLS----TPD--------K--LMYY--PPEVFIKK-RGIDLHLNAEVIEVDTG--YVRVRENGGEKSYEWDYLVFA  109 (449)
T ss_dssp             ---------------------------------CTHHHH-TTCEEETTCEEEEECSS--EEEEECSSSEEEEECSEEEEC
T ss_pred             ---CCCC----CHH--------H--hhhc--CHHHHHHh-cCcEEEecCEEEEEecC--CCEEEECCceEEEEcCEEEEC
Confidence               0000    000        0  0000  00112122 26899999999988543  466777777 37999999999


Q ss_pred             CCCch
Q 015331          158 DGVNS  162 (409)
Q Consensus       158 dG~~s  162 (409)
                      +|...
T Consensus       110 tG~~p  114 (449)
T 3kd9_A          110 NGASP  114 (449)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.82  E-value=1.4e-08  Score=96.29  Aligned_cols=110  Identities=25%  Similarity=0.389  Sum_probs=71.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIR--SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~--V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +++||+|||||++|+++|..|+++|++  |+|||+.+.+.....     +          +...+               
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~---------------   57 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-----P----------LSKEY---------------   57 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-----G----------GGTTT---------------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-----c----------CCHHH---------------
Confidence            357999999999999999999999987  999999875321100     0          00000               


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      ..+.    ...        .. .....   .+.+.+  .+++++.+++|..++....  .|.+.++.++.+|.||.|+|.
T Consensus        58 ~~~~----~~~--------~~-~~~~~---~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~  117 (415)
T 3lxd_A           58 LARE----KTF--------ER-ICIRP---AQFWED--KAVEMKLGAEVVSLDPAAH--TVKLGDGSAIEYGKLIWATGG  117 (415)
T ss_dssp             TTTS----SCS--------GG-GBSSC---HHHHHH--TTEEEEETCCEEEEETTTT--EEEETTSCEEEEEEEEECCCE
T ss_pred             HcCC----CCH--------HH-hccCC---HHHHHH--CCcEEEeCCEEEEEECCCC--EEEECCCCEEEeeEEEEccCC
Confidence            0000    000        00 01111   122222  2688999999999876554  577788889999999999996


Q ss_pred             ch
Q 015331          161 NS  162 (409)
Q Consensus       161 ~s  162 (409)
                      ..
T Consensus       118 ~~  119 (415)
T 3lxd_A          118 DP  119 (415)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.82  E-value=5.4e-09  Score=101.48  Aligned_cols=37  Identities=22%  Similarity=0.515  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999987654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.80  E-value=6.6e-08  Score=93.32  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=45.6

Q ss_pred             HHHHHHHhhCC----------CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          109 LLMEALERELP----------SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~----------~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.|.+.+.          +++|+++++|++|+.++++++|++.+|++++||.||.|.+...
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGV  270 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHH
Confidence            56666776653          4589999999999999888999999998999999999999654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.79  E-value=8.2e-09  Score=99.57  Aligned_cols=36  Identities=28%  Similarity=0.580  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            589999999999999999999999999999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.79  E-value=1.7e-08  Score=97.55  Aligned_cols=112  Identities=17%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+......++       +..+  +                      .
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-------~~~~--~----------------------~   85 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-------LPYV--I----------------------S   85 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-------HHHH--H----------------------T
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-------cchh--h----------------------c
Confidence            6999999999999999999996  8999999998754322111       1000  0                      0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                      +..   ....        .  .+.+  ..+.+.+. .+++++++++|..++.+++.+.+.. .+|+  ++.+|.||.|+|
T Consensus        86 ~~~---~~~~--------~--l~~~--~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG  149 (480)
T 3cgb_A           86 GAI---ASTE--------K--LIAR--NVKTFRDK-YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG  149 (480)
T ss_dssp             TSS---SCGG--------G--GBSS--CHHHHHHT-TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             CCc---CCHH--------H--hhhc--CHHHHHhh-cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCC
Confidence            000   0000        0  0000  01223232 2688999999999988777777765 4566  799999999999


Q ss_pred             CchH
Q 015331          160 VNSV  163 (409)
Q Consensus       160 ~~s~  163 (409)
                      ....
T Consensus       150 ~~p~  153 (480)
T 3cgb_A          150 VRPV  153 (480)
T ss_dssp             EEEC
T ss_pred             Cccc
Confidence            7653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.78  E-value=8.4e-09  Score=99.67  Aligned_cols=37  Identities=27%  Similarity=0.654  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            3579999999999999999999999999999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.77  E-value=8.1e-09  Score=99.23  Aligned_cols=34  Identities=24%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||+|+++|..|++.|++|+|||+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3589999999999999999999999999999987

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.77  E-value=2.7e-08  Score=98.84  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+|||||++|+++|..|++.  |.+|+|||+.+.+....+       ++..        .+                
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~-------~lp~--------~~----------------   84 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANC-------GLPY--------YI----------------   84 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-------GHHH--------HH----------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCC-------CCch--------hh----------------
Confidence            46999999999999999999998  899999999886432111       1100        00                


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCD  158 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~Ad  158 (409)
                      .+...     .       .......  .+ +.+.++. ++.++++++|+.++..++.+.+.. .++.  ++.+|.||.|+
T Consensus        85 ~g~~~-----~-------~~~~~~~--~~-~~~~~~~-gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAt  148 (588)
T 3ics_A           85 GGVIT-----E-------RQKLLVQ--TV-ERMSKRF-NLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSP  148 (588)
T ss_dssp             TTSSC-----C-------GGGGBSS--CH-HHHHHHT-TCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECC
T ss_pred             cCcCC-----C-------hHHhhcc--CH-HHHHHhc-CcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECC
Confidence            00000     0       0000000  11 2222232 678999999999998888777765 3555  68999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       149 G~~p  152 (588)
T 3ics_A          149 GAKP  152 (588)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.76  E-value=2.9e-08  Score=93.02  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++.+|+|||||+||+++|..|++.+.+|+|||+.+.......       .   |.+     .+ .      +.     ..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~-------~---l~~-----~l-~------g~-----~~   60 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP-------R---LNE-----II-A------KN-----KS   60 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG-------G---HHH-----HH-H------SC-----CC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC-------h---hhH-----HH-c------CC-----CC
Confidence            457999999999999999999888999999999876331100       0   000     00 0      00     00


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                         ...+              ...   ..+.+.+.  +++++++++|+.++.++.  +|++.+|+++.+|.||.|+|...
T Consensus        61 ---~~~l--------------~~~---~~~~~~~~--~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A           61 ---IDDI--------------LIK---KNDWYEKN--NIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             ---GGGT--------------BSS---CHHHHHHT--TCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             ---HHHc--------------cCC---CHHHHHHC--CCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCCc
Confidence               0000              011   11222222  789999999999987665  57778898999999999999743

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.75  E-value=2.7e-08  Score=95.89  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=35.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+.++||+|||||++|+++|+.|++.|++|+|||++.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            7788999999999999999999999999999999873

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.75  E-value=1.6e-08  Score=97.22  Aligned_cols=36  Identities=28%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||+|+++|..|++.|++|+|||+++.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            379999999999999999999999999999998654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.74  E-value=9.7e-08  Score=89.56  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                  .                      
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------~----------------------  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG------------------L----------------------  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------T----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc------------------c----------------------
Confidence            468999999999999999999999999999987643220                  0                      


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                             +       +..   + ...+.+.+.+  .+++++++++|.+++.+++.+.|.+.+|+++.+|.||.|+|..+.
T Consensus       185 -------~-------~~~---~-~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          185 -------L-------HPA---A-AKAVQAGLEG--LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             -------S-------CHH---H-HHHHHHHHHT--TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             -------c-------CHH---H-HHHHHHHHHH--cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence                   0       000   0 1233344433  278999999999999888888899999989999999999998775


Q ss_pred             h--HhHhCCC
Q 015331          164 V--AKWLGFK  171 (409)
Q Consensus       164 v--r~~lg~~  171 (409)
                      .  .+.+|+.
T Consensus       245 ~~l~~~~g~~  254 (384)
T 2v3a_A          245 TELAFAAGLA  254 (384)
T ss_dssp             CHHHHHTTCC
T ss_pred             HHHHHHCCCC
Confidence            3  4455554

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.74  E-value=4.6e-08  Score=92.60  Aligned_cols=107  Identities=16%  Similarity=0.286  Sum_probs=70.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIR--SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~--V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||++|+++|..|+++|++  |+|||+.+.......     +          +...+.....           .
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-----~----------l~~~~~~g~~-----------~   56 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-----S----------LSKAVLDGSL-----------E   56 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-----G----------GGTHHHHTSS-----------S
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-----c----------ccHHHhCCCC-----------C
Confidence            4999999999999999999999987  999999875321100     0          0010100000           0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .   ..+ .              ..   .+.+.+.  +++++.+++|+.++....  +|.+.+++++.+|.||.|+|...
T Consensus        57 ~---~~~-~--------------~~---~~~~~~~--~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           57 R---PPI-L--------------AE---ADWYGEA--RIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSRA  111 (410)
T ss_dssp             S---CCB-S--------------SC---TTHHHHT--TCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             H---HHh-c--------------CC---HHHHHHC--CCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCcc
Confidence            0   000 0              00   0112222  689999999999986654  67778888999999999999763

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.73  E-value=3.4e-08  Score=98.74  Aligned_cols=36  Identities=22%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHH---H-cCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALH---R-LGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~---~-~g~~V~v~E~~~~~   39 (409)
                      ++||||||||+|||++|+.|+   + +|.+|+|+||.+..
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            479999999999999999999   6 89999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.72  E-value=6.8e-08  Score=92.54  Aligned_cols=110  Identities=13%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.....++       ....  .+        .+. .        .+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~--~~--------~~~-~--------~~   54 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-------GMQL--YL--------EGK-V--------KD   54 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG-------GHHH--HH--------TTS-S--------CC
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccc-------cchh--hh--------cCc-c--------CC
Confidence            4899999999999999999998  999999999875432211       1100  00        000 0        00


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                         ...+             ..-    +.+.+.+ . +++++.+++|..++.+++.+.+.. .+|+  ++.+|.||.|+|
T Consensus        55 ---~~~~-------------~~~----~~~~~~~-~-gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG  112 (447)
T 1nhp_A           55 ---VNSV-------------RYM----TGEKMES-R-GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPG  112 (447)
T ss_dssp             ---GGGS-------------BSC----CHHHHHH-T-TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ---HHHh-------------hcC----CHHHHHH-C-CCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCC
Confidence               0000             000    1122332 2 688999999999987777777665 3455  489999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       113 ~~p  115 (447)
T 1nhp_A          113 AVP  115 (447)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.72  E-value=1.2e-08  Score=95.76  Aligned_cols=37  Identities=27%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~   37 (409)
                      |+.++||+|||||++|+++|..|++.|  .+|+|+|+++
T Consensus         1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            777899999999999999999999998  5689999875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.71  E-value=4.1e-08  Score=92.85  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+|||||++|+++|..|++.|.  +|+|||+.+.......     +....++..          ..           
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-----~~~~~~~~~----------~~-----------   60 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-----PLSKDFMAH----------GD-----------   60 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-----GGGTHHHHH----------CC-----------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-----CCCHHHhCC----------Cc-----------
Confidence            5899999999999999999999998  4999998874321100     000001100          00           


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                          ...+              .+.       ..+. .+++++.+++|+.++...  .+|++.+++++.+|.||.|+|..
T Consensus        61 ----~~~~--------------~~~-------~~~~-~~v~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~  112 (408)
T 2gqw_A           61 ----AEKI--------------RLD-------CKRA-PEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGAA  112 (408)
T ss_dssp             ----GGGS--------------BCC-------CTTS-CSCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCEE
T ss_pred             ----hhhh--------------hHH-------HHHH-CCCEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCC
Confidence                0000              011       0111 267899999999987654  35677788889999999999986


Q ss_pred             hH
Q 015331          162 SV  163 (409)
Q Consensus       162 s~  163 (409)
                      +.
T Consensus       113 ~~  114 (408)
T 2gqw_A          113 PR  114 (408)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.71  E-value=4.5e-08  Score=93.91  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=71.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.....++       .+..  .++        + ...         
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~--~~~--------g-~~~---------   53 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-------GIAL--YLG--------K-EIK---------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-------GHHH--HHT--------T-CBG---------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-------cchh--hhc--------C-Ccc---------
Confidence            4899999999999999999998  999999999875432221       1100  000        0 000         


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc-C--CCEEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA-D--GAVFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~-~--g~~~~ad~vV~AdG  159 (409)
                           ......        . ...   +.+.+.+  .+++++.+++|..++.+++.+.+... +  +.++.+|.||.|+|
T Consensus        54 -----~~~~~~--------~-~~~---~~~~~~~--~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG  114 (452)
T 2cdu_A           54 -----NNDPRG--------L-FYS---SPEELSN--LGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTG  114 (452)
T ss_dssp             -----GGCGGG--------G-BSC---CHHHHHH--TTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             -----cCCHHH--------h-hhc---CHHHHHH--cCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccC
Confidence                 000000        0 000   1122222  26889999999999877777766542 2  35799999999999


Q ss_pred             CchH
Q 015331          160 VNSV  163 (409)
Q Consensus       160 ~~s~  163 (409)
                      ..+.
T Consensus       115 s~p~  118 (452)
T 2cdu_A          115 SKPT  118 (452)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            7653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.71  E-value=1.6e-08  Score=95.77  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~   38 (409)
                      .+|+|||||++|+++|..|++   .|.+|+|||+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            489999999999999999999   8999999998873

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.69  E-value=2.1e-07  Score=89.37  Aligned_cols=99  Identities=24%  Similarity=0.364  Sum_probs=77.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                  ...+                    
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~~~~--------------------  209 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT------------------MDLE--------------------  209 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999988753210                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                                          + ...+.+.|.+.  +++++.+++|++++.+++.+.+++.+++++.+|.||.|+|..+..
T Consensus       210 --------------------~-~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          210 --------------------V-SRAAERVFKKQ--GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             --------------------H-HHHHHHHHHHH--TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                                0 11233444443  789999999999998888888888888899999999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.68  E-value=1.7e-07  Score=88.45  Aligned_cols=107  Identities=18%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||||++|+++|..|+++|+  +|+|||+.+.......     +          +...+.              ..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~l--------------~~   52 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-----P----------LSKAYL--------------KS   52 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-----G----------GGTGGG--------------GS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-----c----------CCHHHH--------------CC
Confidence            589999999999999999999998  8999999874321100     0          000000              00


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      ...             .... ...   ..+.+.+.  +++++. ++|+.++....  .|.+.++.++.+|.||.|+|...
T Consensus        53 ~~~-------------~~~~-~~~---~~~~~~~~--~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~p  110 (404)
T 3fg2_P           53 GGD-------------PNSL-MFR---PEKFFQDQ--AIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGARN  110 (404)
T ss_dssp             CCC-------------TTSS-BSS---CHHHHHHT--TEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEEE
T ss_pred             CCC-------------HHHc-cCC---CHHHHHhC--CCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCCc
Confidence            000             0000 011   11222222  678888 89999886654  57778888999999999999743

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.68  E-value=2e-08  Score=97.15  Aligned_cols=37  Identities=22%  Similarity=0.546  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            4799999999999999999999999999999998743

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.66  E-value=4.9e-08  Score=97.39  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL------GIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~------g~~V~v~E~~~~~   39 (409)
                      ++||||||||+|||++|+.|+++      |.+|+|+||....
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            48999999999999999999998      9999999998643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.66  E-value=5.9e-08  Score=92.43  Aligned_cols=107  Identities=18%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+  .+|||||||+||+++|..|++.+  .+|+|||+++...       +.|.......  |.        ...      
T Consensus         1 M~--K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v~~--g~--------~~~------   55 (430)
T 3hyw_A            1 MA--KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHLAM--GW--------RKF------   55 (430)
T ss_dssp             -C--CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHHHH--TC--------SCG------
T ss_pred             CC--CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHHhc--CC--------CCH------
Confidence            65  37999999999999999999865  7899999876421       1221111100  00        000      


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                              ..+..+                 +.+.+.+.  +++++.+ +|+.|+.++.  +|++++|+++.+|+||.|+
T Consensus        56 --------~~i~~~-----------------~~~~~~~~--gv~~i~~-~v~~Id~~~~--~V~~~~g~~i~YD~LViAt  105 (430)
T 3hyw_A           56 --------EDISVP-----------------LAPLLPKF--NIEFINE-KAESIDPDAN--TVTTQSGKKIEYDYLVIAT  105 (430)
T ss_dssp             --------GGSEEE-----------------STTTGGGG--TEEEECS-CEEEEETTTT--EEEETTCCEEECSEEEECC
T ss_pred             --------HHhhhc-----------------HHHHHHHC--CcEEEEe-EEEEEECCCC--EEEECCCCEEECCEEEEeC
Confidence                    001010                 00011111  5666655 7888887665  5778899999999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       106 G~~~  109 (430)
T 3hyw_A          106 GPKL  109 (430)
T ss_dssp             CCEE
T ss_pred             CCCc
Confidence            9753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.65  E-value=5.7e-09  Score=101.34  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=46.0

Q ss_pred             ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeC--------CeEEEEEcCCC-----EEecCEEEEcCCCch
Q 015331          104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESG--------LFKLVNLADGA-----VFKTKVLIGCDGVNS  162 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~--------~~~~v~~~~g~-----~~~ad~vV~AdG~~s  162 (409)
                      ...|.++.++|...+.  +..++++++|++++..+        +.|+|++.++.     ++.|+.||.|+|...
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P  214 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTA  214 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCC
Confidence            5778899998876543  35799999999998754        25888887643     689999999999643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.65  E-value=6.5e-08  Score=94.37  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            46899999999999999999999999999999865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.65  E-value=1.9e-07  Score=89.76  Aligned_cols=99  Identities=22%  Similarity=0.272  Sum_probs=76.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +.++                    
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~--------------------  211 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------GDPE--------------------  211 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999988753221                  0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc-C--CC--EEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA-D--GA--VFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~-~--g~--~~~ad~vV~AdG  159 (409)
                                          + ...+.+.|.+.  +++++++++|++++.+++.+.|++. +  |+  ++.+|.||.|+|
T Consensus       212 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G  268 (464)
T 2eq6_A          212 --------------------T-AALLRRALEKE--GIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG  268 (464)
T ss_dssp             --------------------H-HHHHHHHHHHT--TCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred             --------------------H-HHHHHHHHHhc--CCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCC
Confidence                                0 12234444443  7899999999999988887888876 6  76  799999999999


Q ss_pred             CchHh
Q 015331          160 VNSVV  164 (409)
Q Consensus       160 ~~s~v  164 (409)
                      ..+..
T Consensus       269 ~~p~~  273 (464)
T 2eq6_A          269 RKPRT  273 (464)
T ss_dssp             EEESC
T ss_pred             cccCC
Confidence            87754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.64  E-value=3.2e-08  Score=95.91  Aligned_cols=135  Identities=15%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEE
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVA   78 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~   78 (409)
                      |+.++||+|||||+||+++|..|+++  |.+|+|||+.+......+     +-+..++.  +.......      ...+.
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~-----~lsk~l~~--~~~~~~~~------~~~~~   74 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-----PLSKELWF--SDDPNVTK------TLRFK   74 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-----GGGTGGGC--C--CTHHH------HCEEE
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-----CCCHHhhc--CCccchhh------ccccc
Confidence            44568999999999999999999887  889999999875421111     00000000  00000000      01111


Q ss_pred             eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331           79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD  158 (409)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (409)
                      .+....  ..+.+...       .+......+.+   ..-.+++++.+++|..++..+.  +|.+.+|+++.+|.||.|+
T Consensus        75 ~~~~~~--~~~~~~~~-------~~~~~~~~l~~---~~~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviAT  140 (493)
T 1m6i_A           75 QWNGKE--RSIYFQPP-------SFYVSAQDLPH---IENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIAT  140 (493)
T ss_dssp             CTTSCE--EESBSSCG-------GGSBCTTTTTT---STTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECC
T ss_pred             cccccc--ccccccch-------Hhhcchhhhhh---hhcCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECC
Confidence            111000  00111100       00111111110   0112578999999999986654  5777888899999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       141 Gs~p  144 (493)
T 1m6i_A          141 GGTP  144 (493)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.63  E-value=1.1e-07  Score=92.87  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |..++||+|||||++|+++|+.|++.|.+|+|||+++.+
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            345689999999999999999999999999999998743

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.62  E-value=7e-08  Score=95.38  Aligned_cols=111  Identities=17%  Similarity=0.257  Sum_probs=71.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++|+||||||||+++|..|++.  |.+|+|||+.+.+....+       .+..  .+                      .
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~-------~l~~--~~----------------------~   50 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC-------GLPY--HI----------------------S   50 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-------GHHH--HH----------------------T
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc-------CchH--Hh----------------------c
Confidence            4899999999999999999998  889999999876432111       1100  00                      0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                      +....            ........   .+.+.++. +++++++++|+.++..+..+.+.. .++.  ++.+|.||.|+|
T Consensus        51 ~~~~~------------~~~~~~~~---~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG  114 (565)
T 3ntd_A           51 GEIAQ------------RSALVLQT---PESFKARF-NVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPG  114 (565)
T ss_dssp             SSSCC------------GGGGBCCC---HHHHHHHH-CCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             CCcCC------------hHHhhccC---HHHHHHhc-CcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCC
Confidence            00000            00001111   12222221 678999999999998888777765 2343  789999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       115 ~~p  117 (565)
T 3ntd_A          115 AAP  117 (565)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.61  E-value=8.7e-08  Score=89.21  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .||+||||||||+++|..|++.| +|+|||+.+.....       ...+   ..      ..      .+         .
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~-------~~~l---~~------~~------~g---------~   56 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYS-------KPML---SH------YI------AG---------F   56 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCC-------STTH---HH------HH------TT---------S
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccc-------cchh---HH------HH------hC---------C
Confidence            59999999999999999999999 99999998753210       0000   00      00      00         0


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                          ......         ...   ..+.+.+.  +++++.+++|+.++.+.  .+|+ .++.++.+|.||.|+|...
T Consensus        57 ----~~~~~~---------~~~---~~~~~~~~--~v~~~~g~~v~~id~~~--~~V~-~~g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           57 ----IPRNRL---------FPY---SLDWYRKR--GIEIRLAEEAKLIDRGR--KVVI-TEKGEVPYDTLVLATGARA  113 (367)
T ss_dssp             ----SCGGGG---------CSS---CHHHHHHH--TEEEECSCCEEEEETTT--TEEE-ESSCEEECSEEEECCCEEE
T ss_pred             ----CCHHHh---------ccC---CHHHHHhC--CcEEEECCEEEEEECCC--CEEE-ECCcEEECCEEEECCCCCC
Confidence                000000         000   11222222  68899999999887654  3455 6778899999999999754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.60  E-value=5.9e-08  Score=94.31  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~   37 (409)
                      ++||+|||||++|+++|+.|++.   |++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999999   99999999886

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.60  E-value=3.4e-08  Score=95.46  Aligned_cols=35  Identities=20%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+++|+.|++.|.+|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999974

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.58  E-value=6.1e-07  Score=86.22  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..++                   
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~-------------------  209 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ------------------FDPLL-------------------  209 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc------------------cCHHH-------------------
Confidence            58999999999999999999999999999987642110                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC-EEecCEEEEcCCCchH
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA-VFKTKVLIGCDGVNSV  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~s~  163 (409)
                                            ...+.+.|.+.  +++++.+++|.+++.+++++.|++.+|+ ++.+|.||.|+|..+.
T Consensus       210 ----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          210 ----------------------SATLAENMHAQ--GIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence                                  01234444443  7899999999999988777889999998 8999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       266 ~  266 (463)
T 2r9z_A          266 T  266 (463)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.56  E-value=8.3e-08  Score=87.87  Aligned_cols=37  Identities=30%  Similarity=0.539  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR--LGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~--~g~~V~v~E~~~~~~   40 (409)
                      ++||+|||||||||++|+.|++  .|++|+|||+.+.++
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            4799999999999999999985  499999999987654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.56  E-value=3.6e-07  Score=87.50  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------  209 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------FDPM-------------------  209 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh------------------hhHH-------------------
Confidence            358999999999999999999999999999987642110                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCch
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                            -...+.+.|.+.  +++++++++|.+++.++++ +.|.+.+|+++.+|.||.|+|..+
T Consensus       210 ----------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          210 ----------------------ISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREP  265 (450)
T ss_dssp             ----------------------HHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             ----------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCc
Confidence                                  012244445444  7899999999999887543 788898998899999999999877


Q ss_pred             Hh
Q 015331          163 VV  164 (409)
Q Consensus       163 ~v  164 (409)
                      .+
T Consensus       266 ~~  267 (450)
T 1ges_A          266 AN  267 (450)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.56  E-value=8.1e-08  Score=93.11  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ++||+|||||++|+++|+.|+++ ++|+|||+.+.+...-.     .                 ..     ...    .+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~-----~-----------------~~-----~~~----~g  155 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW-----L-----------------KG-----IKQ----EG  155 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG-----G-----------------TC-----SEE----TT
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee-----c-----------------cc-----ccc----CC
Confidence            46999999999999999999999 99999999875422100     0                 00     000    00


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhC-CCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL-PSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~-~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                             +.       .     ...++...+.+.+ .+++++++++|.++..++..+.+.. .+++  .+.+|.||.|+|
T Consensus       156 -------~~-------~-----~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtG  216 (493)
T 1y56_A          156 -------FN-------K-----DSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATG  216 (493)
T ss_dssp             -------TT-------E-----EHHHHHHHHHHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCC
T ss_pred             -------CC-------C-----CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCC
Confidence                   00       0     1223444444443 3578889999999988777665544 4443  689999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       217 a~~  219 (493)
T 1y56_A          217 AID  219 (493)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.53  E-value=8.3e-08  Score=92.35  Aligned_cols=34  Identities=26%  Similarity=0.640  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5899999999999999999999999999999876

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.49  E-value=1.3e-07  Score=90.73  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      ..++||+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            3568999999999999999999999999999999987643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=8.4e-07  Score=84.92  Aligned_cols=100  Identities=21%  Similarity=0.317  Sum_probs=72.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+....                 +.                    
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~--------------------  190 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY-----------------LD--------------------  190 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------CC--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc-----------------CC--------------------
Confidence            35689999999999999999999999999999887432110                 00                    


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                       ..   + ...+.+.+.+.  +++++++++|.+++.++....+.+ ++.++.+|.||.|+|..+
T Consensus       191 -----------------~~---~-~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 -----------------KE---F-TDVLTEEMEAN--NITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             -----------------HH---H-HHHHHHHHHTT--TEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEE
T ss_pred             -----------------HH---H-HHHHHHHHHhC--CCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCC
Confidence                             00   0 12233344332  789999999999987633334555 556799999999999876


Q ss_pred             H
Q 015331          163 V  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       247 ~  247 (447)
T 1nhp_A          247 N  247 (447)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.46  E-value=3e-07  Score=85.16  Aligned_cols=37  Identities=41%  Similarity=0.591  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-Ccc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~-~~~   39 (409)
                      ..+||+|||||++||++|+.|+++|++|+|+|++ +.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4689999999999999999999999999999998 644

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.45  E-value=1.1e-06  Score=84.17  Aligned_cols=100  Identities=13%  Similarity=0.232  Sum_probs=75.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..                    
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~--------------------  211 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------FEK--------------------  211 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------cCH--------------------
Confidence            358999999999999999999999999999987643200                  000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CCCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DGAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~~~~ad~vV~AdG~  160 (409)
                                       .   + ...+.+.|.+.  +++++.+++|.+++.+++.+.+++.   ++.++.+|.||.|.|.
T Consensus       212 -----------------~---~-~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  268 (455)
T 1ebd_A          212 -----------------Q---M-AAIIKKRLKKK--GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR  268 (455)
T ss_dssp             -----------------H---H-HHHHHHHHHHT--TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred             -----------------H---H-HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence                             0   0 12233444443  7899999999999988777777765   4567999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       269 ~p~~  272 (455)
T 1ebd_A          269 RPNT  272 (455)
T ss_dssp             EESC
T ss_pred             Cccc
Confidence            7643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.7e-06  Score=83.44  Aligned_cols=100  Identities=21%  Similarity=0.307  Sum_probs=76.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                  +.+++                  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~------------------  228 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK------------------FDECI------------------  228 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHHH------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc------------------cCHHH------------------
Confidence            358999999999999999999999999999987642210                  00000                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe--EEEEEcCC-CEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF--KLVNLADG-AVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~--~~v~~~~g-~~~~ad~vV~AdG~  160 (409)
                                             ...+.+.|.+.  +++++++++|.+++.++++  +.|.+.+| +++.+|.||.|.|.
T Consensus       229 -----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          229 -----------------------QNTITDHYVKE--GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             -----------------------HHHHHHHHHHH--TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             -----------------------HHHHHHHHHhC--CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence                                   11344455544  7899999999999876554  77888888 78999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       284 ~p~~  287 (479)
T 2hqm_A          284 KSHL  287 (479)
T ss_dssp             EECC
T ss_pred             CCcc
Confidence            7654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.44  E-value=2.2e-07  Score=87.53  Aligned_cols=39  Identities=33%  Similarity=0.470  Sum_probs=35.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~   39 (409)
                      |++++||+|||||++||++|+.|+++ |++|+|+|+++.+
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            44578999999999999999999999 9999999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.44  E-value=5.4e-07  Score=87.32  Aligned_cols=35  Identities=9%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|||||||+||+.+|..|++.+++|+|||+++.
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            46899999999999999999999999999998763

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.44  E-value=1e-06  Score=85.03  Aligned_cols=100  Identities=20%  Similarity=0.316  Sum_probs=74.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... .                 ..                    
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~-----------------~~--------------------  224 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-M-----------------DG--------------------  224 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-S-----------------CH--------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-c-----------------CH--------------------
Confidence            358999999999999999999999999999988753221 0                 00                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEE--eCCeEEEEEc-----CCCEEecCEEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE--SGLFKLVNLA-----DGAVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~--~~~~~~v~~~-----~g~~~~ad~vV~  156 (409)
                                          .+ ...+.+.|.+.  +++++++++|.+++.  +++.+.|.+.     ++.++.+|.||.
T Consensus       225 --------------------~~-~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~  281 (478)
T 1v59_A          225 --------------------EV-AKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV  281 (478)
T ss_dssp             --------------------HH-HHHHHHHHHHT--TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             --------------------HH-HHHHHHHHHHC--CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEE
Confidence                                00 12233444433  789999999999987  5666777765     346799999999


Q ss_pred             cCCCchHh
Q 015331          157 CDGVNSVV  164 (409)
Q Consensus       157 AdG~~s~v  164 (409)
                      |.|..+..
T Consensus       282 a~G~~p~~  289 (478)
T 1v59_A          282 AVGRRPYI  289 (478)
T ss_dssp             CSCEEECC
T ss_pred             CCCCCcCC
Confidence            99987654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.43  E-value=2.2e-07  Score=90.00  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            4689999999999999999999999999999984

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.43  E-value=9.8e-07  Score=84.07  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +|+||||||||+++|..|++.|  .+|+|||+++......++       +..  .+         +...        .. 
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-------l~~--~~---------~~~~--------~~-   54 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-------LPY--VI---------GEVV--------ED-   54 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGG-------HHH--HH---------TTSS--------CC-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcch-------hHH--HH---------cCCc--------cc-
Confidence            6999999999999999999988  479999988743221111       100  00         0000        00 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---CCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---GAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~~~~ad~vV~AdG~  160 (409)
                       .  .            .........+   +.+.  +++++.+++|+.++.....+.+....   +.++.+|.||.|+|.
T Consensus        55 -~--~------------~~~~~~~~~~---~~~~--~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs  114 (437)
T 4eqs_A           55 -R--R------------YALAYTPEKF---YDRK--QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA  114 (437)
T ss_dssp             -G--G------------GTBCCCHHHH---HHHH--CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE
T ss_pred             -h--h------------hhhhcCHHHH---HHhc--CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC
Confidence             0  0            0001111222   2222  68899999999998877766665543   236889999999997


Q ss_pred             ch
Q 015331          161 NS  162 (409)
Q Consensus       161 ~s  162 (409)
                      ..
T Consensus       115 ~p  116 (437)
T 4eqs_A          115 SA  116 (437)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.42  E-value=1e-06  Score=83.02  Aligned_cols=105  Identities=18%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|||||||+||+++|..|++.+  .+|+|||+++....       .+....          +.......          
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~-------~p~~~~----------v~~g~~~~----------   55 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT-------CYMSNE----------VIGGDREL----------   55 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC-------STTHHH----------HHHTSSCG----------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC-------ccCHHH----------HhcCCCCH----------
Confidence            48999999999999999999876  58999998764211       111111          10000000          


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                          ..+              ..+...    +.+.  ++++..+ +|+.|+.+..  +|.+.+|.++.+|.||.|+|...
T Consensus        56 ----~~~--------------~~~~~~----~~~~--gv~~i~~-~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           56 ----ASL--------------RVGYDG----LRAH--GIQVVHD-SALGIDPDKK--LVKTAGGAEFAYDRCVVAPGIDL  108 (401)
T ss_dssp             ----GGG--------------EECSHH----HHHT--TCEEECS-CEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             ----HHH--------------hhCHHH----HHHC--CCEEEEe-EEEEEEccCc--EEEecccceeecceeeeccCCcc
Confidence                000              011111    2222  5676654 7888876654  56778899999999999999865


Q ss_pred             H
Q 015331          163 V  163 (409)
Q Consensus       163 ~  163 (409)
                      .
T Consensus       109 ~  109 (401)
T 3vrd_B          109 L  109 (401)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.42  E-value=8.7e-07  Score=85.70  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4689999999999999999999999999999963

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.38  E-value=2.9e-06  Score=80.32  Aligned_cols=109  Identities=17%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                 +..                    
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~-----------------~~~--------------------  194 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV-----------------AGE--------------------  194 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh-----------------cCH--------------------
Confidence            4589999999999999999999999999999887531100                 000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEEEEcCCCch
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                       .   + ...+.+.+.+.  +++++++++|..++.+++.+ .|.+.+|+++.||.||.|.|..+
T Consensus       195 -----------------~---~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          195 -----------------A---L-SEFYQAEHRAH--GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             -----------------H---H-HHHHHHHHHHT--TCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             -----------------H---H-HHHHHHHHHhC--CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence                             0   0 11233333333  78999999999999876665 68899999999999999999876


Q ss_pred             H--hHhHhCCCC
Q 015331          163 V--VAKWLGFKK  172 (409)
Q Consensus       163 ~--vr~~lg~~~  172 (409)
                      .  +.+..|+..
T Consensus       252 ~~~l~~~~gl~~  263 (415)
T 3lxd_A          252 CVGALISAGASG  263 (415)
T ss_dssp             SCHHHHHTTCCC
T ss_pred             ChHHHHhCCCCc
Confidence            4  344455543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.38  E-value=1.4e-06  Score=82.35  Aligned_cols=109  Identities=23%  Similarity=0.390  Sum_probs=80.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...            .+     ..                    
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~------------~~-----~~--------------------  185 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR------------VL-----GR--------------------  185 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH------------HH-----CH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh------------hc-----CH--------------------
Confidence            458999999999999999999999999999987653200            00     00                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                          .+ ...+.+.+.+.  +++++++++|..++.++....|.+.+|+++.||.||.|.|..+.
T Consensus       186 --------------------~~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          186 --------------------RI-GAWLRGLLTEL--GVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             --------------------HH-HHHHHHHHHHH--TCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             --------------------HH-HHHHHHHHHHC--CCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence                                00 12233444443  78999999999998776556789999999999999999998764


Q ss_pred             --hHhHhCCCC
Q 015331          164 --VAKWLGFKK  172 (409)
Q Consensus       164 --vr~~lg~~~  172 (409)
                        +.+.+|+..
T Consensus       243 ~~l~~~~gl~~  253 (410)
T 3ef6_A          243 DQLARQAGLAC  253 (410)
T ss_dssp             CHHHHHTTCCB
T ss_pred             HHHHHhCCCcc
Confidence              345555543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.37  E-value=2.5e-06  Score=82.47  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=76.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +.+++                  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~------------------  228 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------ADRDL------------------  228 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHHH------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------cCHHH------------------
Confidence            358999999999999999999999999999987642210                  00000                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC----CCEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD----GAVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~----g~~~~ad~vV~AdG  159 (409)
                                             ...+.+.|.+.  +++++++++|.+++.+++.+.|++.+    |+++.+|.||.|.|
T Consensus       229 -----------------------~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G  283 (482)
T 1ojt_A          229 -----------------------VKVWQKQNEYR--FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  283 (482)
T ss_dssp             -----------------------HHHHHHHHGGG--EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             -----------------------HHHHHHHHHhc--CCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcC
Confidence                                   11234444443  68999999999999888778888876    77799999999999


Q ss_pred             CchHh
Q 015331          160 VNSVV  164 (409)
Q Consensus       160 ~~s~v  164 (409)
                      ..+..
T Consensus       284 ~~p~~  288 (482)
T 1ojt_A          284 RAPNG  288 (482)
T ss_dssp             EEECG
T ss_pred             CCcCC
Confidence            87654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.36  E-value=3.2e-06  Score=82.49  Aligned_cols=106  Identities=20%  Similarity=0.291  Sum_probs=79.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+...                  +..++                   
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~-------------------  257 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------KDNET-------------------  257 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------CSHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------ccHHH-------------------
Confidence            58999999999999999999999999999987743210                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe----EEEEEcCCC-EEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF----KLVNLADGA-VFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~----~~v~~~~g~-~~~ad~vV~AdG  159 (409)
                                            ...+.+.|.+.  +++++.+++|++++.++++    +.|++.+|+ ++.+|.||.|.|
T Consensus       258 ----------------------~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          258 ----------------------RAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ----------------------HHHHHHHHHhC--CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcC
Confidence                                  12344444443  7899999999999986555    778888887 899999999999


Q ss_pred             CchHh---HhHhCCC
Q 015331          160 VNSVV---AKWLGFK  171 (409)
Q Consensus       160 ~~s~v---r~~lg~~  171 (409)
                      ..+..   .+.+|+.
T Consensus       314 ~~p~~~~~l~~~gl~  328 (523)
T 1mo9_A          314 EQPRSAELAKILGLD  328 (523)
T ss_dssp             CEECCHHHHHHHTCC
T ss_pred             CccCCccCHHHcCCc
Confidence            87754   3444543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.34  E-value=2.7e-06  Score=80.21  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=79.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+....                 +                      
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----------------~----------------------  182 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV-----------------V----------------------  182 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc-----------------c----------------------
Confidence            3579999999999999999999999999999876431100                 0                      


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEEEEcCCCch
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                                     +..   + ...+.+.+.+.  +++++++++|.+++.+++.+ .|.+.+|+++.||.||.|.|..+
T Consensus       183 ---------------~~~---~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          183 ---------------TPE---I-SSYFHDRHSGA--GIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             ---------------CHH---H-HHHHHHHHHHT--TCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             ---------------CHH---H-HHHHHHHHHhC--CcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCcc
Confidence                           000   0 11233334333  78999999999999877665 58899999999999999999865


Q ss_pred             H--hHhHhCCCC
Q 015331          163 V--VAKWLGFKK  172 (409)
Q Consensus       163 ~--vr~~lg~~~  172 (409)
                      .  +.+.+|+..
T Consensus       242 ~~~l~~~~gl~~  253 (404)
T 3fg2_P          242 NVEIAAAAGLPT  253 (404)
T ss_dssp             CCHHHHHTTCCB
T ss_pred             CHHHHHhCCCCC
Confidence            4  345555543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.33  E-value=3.7e-06  Score=81.03  Aligned_cols=108  Identities=23%  Similarity=0.326  Sum_probs=80.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+|+|||||++|+-+|..|++. |.+|+++++.+.+....                                       
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~---------------------------------------  199 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF---------------------------------------  199 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT---------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc---------------------------------------
Confidence            35899999999999999999999 99999999876431100                                       


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                              +.       ..   + ...+.+.+.+.  +++++.+++|.+++.+++.++|.+.+|+++.+|.||.|.|..+
T Consensus       200 --------~~-------~~---~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          200 --------TS-------KS---L-SQMLRHDLEKN--DVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             --------SC-------HH---H-HHHHHHHHHHT--TCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEE
T ss_pred             --------cC-------HH---H-HHHHHHHHHhc--CCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCc
Confidence                    00       00   0 12233444433  7899999999999987778888899999999999999999865


Q ss_pred             H--hHhHhCCC
Q 015331          163 V--VAKWLGFK  171 (409)
Q Consensus       163 ~--vr~~lg~~  171 (409)
                      .  +.+.+|+.
T Consensus       259 ~~~l~~~~gl~  269 (472)
T 3iwa_A          259 NTQLARDAGLE  269 (472)
T ss_dssp             CCHHHHHHTCC
T ss_pred             CHHHHHhCCcc
Confidence            3  44455554

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=2.5e-06  Score=81.82  Aligned_cols=98  Identities=23%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +.+++                  
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~------------------  214 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------YDSEL------------------  214 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHHH------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------cCHHH------------------
Confidence            358999999999999999999999999999988753210                  00000                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~  161 (409)
                                             ...+.+.|.+.  +++++.+++|..++. ++ +.++..+|  .++.+|.||.|+|..
T Consensus       215 -----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~  267 (458)
T 1lvl_A          215 -----------------------TAPVAESLKKL--GIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRR  267 (458)
T ss_dssp             -----------------------HHHHHHHHHHH--TCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEE
T ss_pred             -----------------------HHHHHHHHHHC--CCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCC
Confidence                                   11234444444  789999999999986 43 66664456  579999999999987


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       268 p~~  270 (458)
T 1lvl_A          268 PRT  270 (458)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.32  E-value=6.3e-06  Score=81.29  Aligned_cols=106  Identities=24%  Similarity=0.396  Sum_probs=78.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                  +..++                   
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~-------------------  194 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP------------------VDREM-------------------  194 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT------------------SCHHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh------------------cCHHH-------------------
Confidence            48999999999999999999999999999987642210                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEE-------------------eCCeEEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE-------------------SGLFKLVNLAD  145 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~-------------------~~~~~~v~~~~  145 (409)
                                            ...+.+.|.+.  +++++++++|.+++.                   .++.+.+.+.+
T Consensus       195 ----------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  250 (565)
T 3ntd_A          195 ----------------------AGFAHQAIRDQ--GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSN  250 (565)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETT
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcC
Confidence                                  12233444433  789999999999987                   36677888889


Q ss_pred             CCEEecCEEEEcCCCchH--hHhHhCCC
Q 015331          146 GAVFKTKVLIGCDGVNSV--VAKWLGFK  171 (409)
Q Consensus       146 g~~~~ad~vV~AdG~~s~--vr~~lg~~  171 (409)
                      |+++.+|.||.|.|..+.  +.+.+|+.
T Consensus       251 g~~i~~D~vi~a~G~~p~~~l~~~~g~~  278 (565)
T 3ntd_A          251 GELLETDLLIMAIGVRPETQLARDAGLA  278 (565)
T ss_dssp             SCEEEESEEEECSCEEECCHHHHHHTCC
T ss_pred             CCEEEcCEEEECcCCccchHHHHhCCcc
Confidence            999999999999998764  33444543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.30  E-value=6.6e-06  Score=79.82  Aligned_cols=100  Identities=19%  Similarity=0.260  Sum_probs=77.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                  +..+                   
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~-------------------  224 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY------------------EDAD-------------------  224 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC------------------SSHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH-------------------
Confidence            358999999999999999999999999999987643210                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.+++++.|.+.+|+++.+|.||.|.|..+.
T Consensus       225 ---------------------~-~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          225 ---------------------A-ALVLEESFAER--GVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPN  280 (499)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcC
Confidence                                 0 12234444443  78999999999999887778888888889999999999998875


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       281 ~  281 (499)
T 1xdi_A          281 T  281 (499)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.30  E-value=1.1e-06  Score=91.71  Aligned_cols=36  Identities=33%  Similarity=0.589  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||||+++|..|+++|++|+|||+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            479999999999999999999999999999998754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.30  E-value=6.9e-07  Score=83.42  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|+++.+
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            4679999999999999999999999999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.29  E-value=6.3e-06  Score=79.97  Aligned_cols=99  Identities=21%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +..++                   
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~-------------------  219 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FDESV-------------------  219 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc------------------cchhh-------------------
Confidence            57999999999999999999999999999987642210                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCE-EecCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAV-FKTKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~-~~ad~vV~AdG~~s  162 (409)
                                            ...+.+.|.+.  +++++.+++|.+++.+++ .+.|.+.+|++ +.+|.||.|.|..+
T Consensus       220 ----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p  275 (500)
T 1onf_A          220 ----------------------INVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSP  275 (500)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred             ----------------------HHHHHHHHHhC--CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCc
Confidence                                  11234444443  789999999999987653 47888889987 99999999999876


Q ss_pred             Hh
Q 015331          163 VV  164 (409)
Q Consensus       163 ~v  164 (409)
                      ..
T Consensus       276 ~~  277 (500)
T 1onf_A          276 DT  277 (500)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.29  E-value=3.2e-06  Score=81.32  Aligned_cols=100  Identities=24%  Similarity=0.338  Sum_probs=74.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +.++                   
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~-------------------  216 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT------------------LDED-------------------  216 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc------------------CCHH-------------------
Confidence            358999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHH-HhhCCCCeEEeCceEEEEEEeCCeEEEEEc--CC--CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGTIRYSSKVVSVEESGLFKLVNLA--DG--AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l-~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~--~g--~~~~ad~vV~Ad  158 (409)
                                           + ...+.+.| .+.  +++++++++|.+++.+++.+.+.+.  +|  .++.+|.||.|.
T Consensus       217 ---------------------~-~~~l~~~l~~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~  272 (468)
T 2qae_A          217 ---------------------V-TNALVGALAKNE--KMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSV  272 (468)
T ss_dssp             ---------------------H-HHHHHHHHHHHT--CCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECS
T ss_pred             ---------------------H-HHHHHHHHhhcC--CcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECC
Confidence                                 0 12344445 333  7899999999999987766777776  66  579999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |..+..
T Consensus       273 G~~p~~  278 (468)
T 2qae_A          273 GRRPFT  278 (468)
T ss_dssp             CEEECC
T ss_pred             CcccCC
Confidence            987653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.29  E-value=3.9e-06  Score=80.89  Aligned_cols=100  Identities=21%  Similarity=0.321  Sum_probs=74.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+....                 +.++                    
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~--------------------  221 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------IDME--------------------  221 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------CCHH--------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------cCHH--------------------
Confidence            589999999999999999999999999999887532210                 0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEE-----cCCCEEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNL-----ADGAVFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~-----~~g~~~~ad~vV~Ad  158 (409)
                                          + ...+.+.|.+.  +++++++++|.+++.+++. +.+++     .++.++.+|.||.|.
T Consensus       222 --------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~  278 (474)
T 1zmd_A          222 --------------------I-SKNFQRILQKQ--GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCI  278 (474)
T ss_dssp             --------------------H-HHHHHHHHHHT--TCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECS
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECc
Confidence                                0 11234444443  7899999999999987765 66764     455689999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |..+..
T Consensus       279 G~~p~~  284 (474)
T 1zmd_A          279 GRRPFT  284 (474)
T ss_dssp             CEEECC
T ss_pred             CCCcCC
Confidence            987643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.28  E-value=3.7e-06  Score=80.56  Aligned_cols=99  Identities=16%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+++|||||+.|+-+|..|++.|.+|+++++.+.+....                 +..+                   
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~d~~-------------------  190 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY-----------------FDKE-------------------  190 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------CCHH-------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc-----------------CCHH-------------------
Confidence            3579999999999999999999999999999876431100                 0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++..++.+.|.++++ ++.+|.||.|.|....
T Consensus       191 ---------------------~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          191 ---------------------M-VAEVQKSLEKQ--AVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             ---------------------H-HHHHHHHHHTT--TEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             ---------------------H-HHHHHHHHHHc--CCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence                                 0 12233444333  789999999999998777778888777 8999999999998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.28  E-value=7.9e-06  Score=78.51  Aligned_cols=100  Identities=21%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..++                  
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~------------------  214 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN------------------EDADV------------------  214 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHHH------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHHH------------------
Confidence            358999999999999999999999999999988643210                  00000                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc-CC--CEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA-DG--AVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~-~g--~~~~ad~vV~AdG~  160 (409)
                                             ...+.+.|.+.  +++++.+++|.+++.+++.+.+.+. +|  .++.+|.||.|.|.
T Consensus       215 -----------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          215 -----------------------SKEIEKQFKKL--GVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             -----------------------HHHHHHHHHHH--TCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred             -----------------------HHHHHHHHHHc--CCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence                                   11234444444  7899999999999987766777775 56  57899999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       270 ~p~~  273 (464)
T 2a8x_A          270 APNV  273 (464)
T ss_dssp             EECC
T ss_pred             CccC
Confidence            7643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.28  E-value=4.9e-06  Score=80.52  Aligned_cols=99  Identities=15%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+++|||||+.|+-+|..|++.   |.+|+|+|+.+.+-..                  +..+                 
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d~~-----------------  232 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------FDSE-----------------  232 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------SCHH-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc------------------cCHH-----------------
Confidence            5899999999999999999999   9999999988742210                  0000                 


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCCC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                             + ...+.+.|.+.  +++++++++|.+++.+++ .+.|++.+|+++.+|.||.|.|.
T Consensus       233 -----------------------~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          233 -----------------------L-RKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             -----------------------H-HHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             -----------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence                                   0 12344444443  789999999999988764 47888889988999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       287 ~p~~  290 (490)
T 1fec_A          287 VPRS  290 (490)
T ss_dssp             EESC
T ss_pred             CcCc
Confidence            7654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.27  E-value=5.4e-06  Score=78.82  Aligned_cols=108  Identities=18%  Similarity=0.244  Sum_probs=78.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                 +..                    
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~-----------------~~~--------------------  191 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------TAP--------------------  191 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------SCH--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch-----------------hhH--------------------
Confidence            4589999999999999999999999999999866421100                 000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEE--eCCeE-EEEEcCCCEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE--SGLFK-LVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~--~~~~~-~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                       .   + ...+.+.+.+.  +++++++++|.+++.  +++.+ .|.+.+|+++.+|.||.|.|.
T Consensus       192 -----------------~---~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          192 -----------------P---V-SAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             -----------------H---H-HHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             -----------------H---H-HHHHHHHHHhC--CeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence                             0   0 11233444443  789999999999987  44444 688889989999999999997


Q ss_pred             chH--hHhHhCCC
Q 015331          161 NSV--VAKWLGFK  171 (409)
Q Consensus       161 ~s~--vr~~lg~~  171 (409)
                      .+.  +.+.+|+.
T Consensus       249 ~p~~~l~~~~gl~  261 (431)
T 1q1r_A          249 IPNCELASAAGLQ  261 (431)
T ss_dssp             EECCHHHHHTTCC
T ss_pred             CcCcchhhccCCC
Confidence            653  34455554

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.27  E-value=4.4e-06  Score=78.86  Aligned_cols=104  Identities=18%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....                 +..+                   
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~-------------------  188 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------APAT-------------------  188 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc-----------------cCHH-------------------
Confidence            4689999999999999999999999999999887421100                 0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++  ++  .|++.+|+++.+|.||.|.|..+.
T Consensus       189 ---------------------~-~~~l~~~l~~~--GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          189 ---------------------L-ADFVARYHAAQ--GVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             ---------------------H-HHHHHHHHHHc--CcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCcc
Confidence                                 0 12234444443  78999999999998  33  677888989999999999998753


Q ss_pred             --hHhHhCCC
Q 015331          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~lg~~  171 (409)
                        +.+.+|+.
T Consensus       241 ~~l~~~~gl~  250 (408)
T 2gqw_A          241 DALARAAGLA  250 (408)
T ss_dssp             CHHHHHHTCC
T ss_pred             HHHHHhCCCC
Confidence              34455554

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.26  E-value=1.6e-06  Score=84.24  Aligned_cols=52  Identities=13%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC----EEecCEEEEcCCCc
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA----VFKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~----~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+.++. +|+++++|+.|+.+++++.|++.+++    +++||.||.|.+..
T Consensus       242 ~l~~~l~~~l~~-~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          242 KLPTAMYRDIQD-KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             HHHHHHHHHTGG-GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccc-ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence            444555555533 79999999999999888999887765    47999999999965

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.26  E-value=6.2e-07  Score=86.18  Aligned_cols=37  Identities=27%  Similarity=0.485  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++++||+||||||+|+++|..|++.|++|+|||++.
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            7778999999999999999999999999999999873

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.25  E-value=6.5e-06  Score=79.67  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=74.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~-------------------  216 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------------------QDEE-------------------  216 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------------------CCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------CCHH-------------------
Confidence            358999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc--CC--CEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA--DG--AVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~--~g--~~~~ad~vV~AdG  159 (409)
                                           + ...+.+.|.+   .++++.+++|..++.+++.+.+.+.  +|  .++.+|.||.|.|
T Consensus       217 ---------------------~-~~~l~~~l~~---~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G  271 (492)
T 3ic9_A          217 ---------------------M-KRYAEKTFNE---EFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATG  271 (492)
T ss_dssp             ---------------------H-HHHHHHHHHT---TSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSC
T ss_pred             ---------------------H-HHHHHHHHhh---CcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeC
Confidence                                 0 1223333433   2889999999999988888888775  66  5799999999999


Q ss_pred             CchH
Q 015331          160 VNSV  163 (409)
Q Consensus       160 ~~s~  163 (409)
                      ....
T Consensus       272 ~~p~  275 (492)
T 3ic9_A          272 RKAN  275 (492)
T ss_dssp             CEES
T ss_pred             CccC
Confidence            8764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.25  E-value=1.1e-06  Score=83.56  Aligned_cols=40  Identities=20%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |..++||+|||||++|+++|..|+++|++|+|+|+++.++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            6678999999999999999999999999999999987653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.24  E-value=1.1e-05  Score=78.12  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=75.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      .+|+|||||+.|+-+|..|++.   |.+|+|+|+.+.+-..                  +.+++                
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d~~~----------------  237 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG------------------FDETI----------------  237 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT------------------SCHHH----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc------------------cCHHH----------------
Confidence            5899999999999999999999   9999999987642210                  00000                


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCCC
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                               ...+.+.|.+.  +++++++++|.+++.+++ .+.|++.+|+++.+|.||.|.|.
T Consensus       238 -------------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          238 -------------------------REEVTKQLTAN--GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             -------------------------HHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             -------------------------HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence                                     12234444443  789999999999987754 47888889989999999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      .+..
T Consensus       291 ~p~~  294 (495)
T 2wpf_A          291 IPRT  294 (495)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            7654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.23  E-value=1e-05  Score=77.42  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+....                 +..+                   
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~-------------------  192 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY-----------------FDKE-------------------  192 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT-----------------SCHH-------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh-----------------hhhh-------------------
Confidence            3589999999999999999999999999999876432100                 0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.+++.+.....+|+++.+|.||.|.|....
T Consensus       193 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          193 ---------------------F-TDILAKDYEAH--GVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence                                 0 12233444443  78999999999998766666533347788999999999998764


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       249 ~  249 (452)
T 2cdu_A          249 T  249 (452)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.22  E-value=9.2e-06  Score=78.66  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=75.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~-------------------  240 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG------------------MDGE-------------------  240 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc------------------CCHH-------------------
Confidence            357999999999999999999999999999987643210                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---C--CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---G--AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g--~~~~ad~vV~Ad  158 (409)
                                           + ...+.+.|.+.  +++++.+++|..++.+++.+.+.+.+   |  .++.+|.||.|.
T Consensus       241 ---------------------~-~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~  296 (491)
T 3urh_A          241 ---------------------V-AKQLQRMLTKQ--GIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIAT  296 (491)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECC
T ss_pred             ---------------------H-HHHHHHHHHhC--CCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEee
Confidence                                 0 12234444443  78999999999999988888777763   4  478999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |.....
T Consensus       297 G~~p~~  302 (491)
T 3urh_A          297 GRKPST  302 (491)
T ss_dssp             CCEECC
T ss_pred             CCccCC
Confidence            987643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.22  E-value=3.5e-06  Score=81.19  Aligned_cols=100  Identities=23%  Similarity=0.399  Sum_probs=74.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------  219 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------MDAE-------------------  219 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------ccHH-------------------
Confidence            358999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~Ad  158 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.+++.+.+.+.   +|  .++.+|.||.|.
T Consensus       220 ---------------------~-~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~  275 (470)
T 1dxl_A          220 ---------------------I-RKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  275 (470)
T ss_dssp             ---------------------H-HHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ---------------------H-HHHHHHHHHHc--CCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECC
Confidence                                 0 12234444443  7899999999999877666777765   44  579999999999


Q ss_pred             CCchHh
Q 015331          159 GVNSVV  164 (409)
Q Consensus       159 G~~s~v  164 (409)
                      |..+..
T Consensus       276 G~~p~~  281 (470)
T 1dxl_A          276 GRTPFT  281 (470)
T ss_dssp             CEEECC
T ss_pred             CCCcCC
Confidence            987643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.21  E-value=6.6e-07  Score=85.67  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++++||+|||||++|+++|..|++.|++|+|||++.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            7678999999999999999999999999999999873

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.21  E-value=7.5e-07  Score=85.65  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=32.1

Q ss_pred             CCC-CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            1 MEE-DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         1 M~~-~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |++ ++||+||||||+|+++|+.|+++|++|+|||+.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            543 689999999999999999999999999999993

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.20  E-value=6.9e-06  Score=79.25  Aligned_cols=98  Identities=16%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                  +..+                   
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------  228 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI------------------YDGD-------------------  228 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc------------------CCHH-------------------
Confidence            468999999999999999999999999999987642210                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.+.+.  +++++++++|.+++.++....+.++ +.++.+|.||.|.|..+.
T Consensus       229 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          229 ---------------------M-AEYIYKEADKH--HIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             ---------------------H-HHHHHHHHHHc--CcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence                                 0 11233444433  7899999999999876433345554 457999999999998764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.20  E-value=1.1e-05  Score=77.63  Aligned_cols=98  Identities=14%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..      .             .+                   
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~-------------~~-------------------  217 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE------D-------------PA-------------------  217 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTS------C-------------HH-------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCC------C-------------HH-------------------
Confidence            358999999999999999999999999999987642110      0             00                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.+++.+.|.+. +.++.+|.||.|.|..+.
T Consensus       218 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          218 ---------------------I-GEAVTAAFRAE--GIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred             ---------------------H-HHHHHHHHHhC--CCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence                                 0 12234444443  7899999999999988877778776 457999999999999875


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      .
T Consensus       273 ~  273 (467)
T 1zk7_A          273 T  273 (467)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.20  E-value=1.5e-06  Score=81.28  Aligned_cols=38  Identities=26%  Similarity=0.525  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+ ++||+|||||++|+++|+.|+++|++|+|+|+++.+
T Consensus         1 m~-~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            1 MK-SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             -C-CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            54 589999999999999999999999999999998754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.17  E-value=2.2e-05  Score=76.45  Aligned_cols=99  Identities=17%  Similarity=0.094  Sum_probs=77.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..+++.|.+|+|++++.....                   ..+++                  
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~-------------------~D~ei------------------  265 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG-------------------FDQQC------------------  265 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT-------------------SCHHH------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc-------------------cchhH------------------
Confidence            45899999999999999999999999999986432110                   00100                  


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                             ...+.+.|.+.  ++.++.++.+..++..++.+.|.+.++.++.+|.|+.|.|+...
T Consensus       266 -----------------------~~~l~~~l~~~--gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          266 -----------------------AVKVKLYMEEQ--GVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             -----------------------HHHHHHHHHHT--TCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred             -----------------------HHHHHHHHHhh--cceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence                                   12244455444  78999999999999999999999999999999999999998765


Q ss_pred             h
Q 015331          164 V  164 (409)
Q Consensus       164 v  164 (409)
                      +
T Consensus       321 t  321 (542)
T 4b1b_A          321 I  321 (542)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.16  E-value=1.6e-06  Score=80.68  Aligned_cols=35  Identities=31%  Similarity=0.554  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +||+|||||++|+++|+.|+++|++|+|+|+++.+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            69999999999999999999999999999998754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.16  E-value=1.2e-05  Score=77.74  Aligned_cols=99  Identities=16%  Similarity=0.279  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+....                 +.++                   
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~-------------------  237 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------YDRD-------------------  237 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCHH-------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------HHHH-------------------
Confidence            4589999999999999999999999999999877432110                 0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|++++.++....|.+ +++++.+|.||.|.|....
T Consensus       238 ---------------------~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          238 ---------------------L-TDLMAKNMEEH--GIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             ---------------------H-HHHHHHHHHTT--TCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             ---------------------H-HHHHHHHHHhC--CeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence                                 0 12233444433  789999999999986332223555 6778999999999998664

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.15  E-value=1.3e-05  Score=72.79  Aligned_cols=96  Identities=15%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                    +.                   
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------~~-------------------  185 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------KI-------------------  185 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------------HH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC--------------------HH-------------------
Confidence            358999999999999999999999999999987642100                    00                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcC----C--CEEecCEEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLAD----G--AVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~----g--~~~~ad~vV~  156 (409)
                                           + ...+.+.|.+  .+++++++++|.+++.+++.+ .|.+.+    |  .++.+|.||.
T Consensus       186 ---------------------~-~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~  241 (320)
T 1trb_A          186 ---------------------L-IKRLMDKVEN--GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV  241 (320)
T ss_dssp             ---------------------H-HHHHHHHHHT--SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEE
T ss_pred             ---------------------H-HHHHHHhccc--CCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEE
Confidence                                 0 1123333333  278999999999998776443 355544    4  4789999999


Q ss_pred             cCCCch
Q 015331          157 CDGVNS  162 (409)
Q Consensus       157 AdG~~s  162 (409)
                      |.|..+
T Consensus       242 a~G~~p  247 (320)
T 1trb_A          242 AIGHSP  247 (320)
T ss_dssp             CSCEEE
T ss_pred             EeCCCC
Confidence            999654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.15  E-value=2.4e-05  Score=75.70  Aligned_cols=108  Identities=26%  Similarity=0.296  Sum_probs=77.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR----LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS   79 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (409)
                      ..+|+|||||+.|+-+|..|++    .|.+|+++++.+.+....                 +...               
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~-----------------l~~~---------------  227 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------LPEY---------------  227 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------SCHH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-----------------CCHH---------------
Confidence            3589999999999999999987    478899998765311000                 0000               


Q ss_pred             ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                                               + ...+.+.+.+.  +++++.+++|..++.+++.+.|++.+|+++.||.||.|.|
T Consensus       228 -------------------------~-~~~~~~~l~~~--GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G  279 (493)
T 1m6i_A          228 -------------------------L-SNWTMEKVRRE--GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  279 (493)
T ss_dssp             -------------------------H-HHHHHHHHHTT--TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             -------------------------H-HHHHHHHHHhc--CCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCC
Confidence                                     0 11233344333  7899999999999987777889999999999999999999


Q ss_pred             CchH--hHhHhCCC
Q 015331          160 VNSV--VAKWLGFK  171 (409)
Q Consensus       160 ~~s~--vr~~lg~~  171 (409)
                      ..+.  +.+.+|+.
T Consensus       280 ~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          280 LEPNVELAKTGGLE  293 (493)
T ss_dssp             EEECCTTHHHHTCC
T ss_pred             CCccHHHHHHcCCc
Confidence            8764  34455544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.14  E-value=1e-06  Score=85.37  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=33.5

Q ss_pred             CCC-CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEE-DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~-~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++ ++||+||||||+|+++|..|++.|.+|+|||+++
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            443 4899999999999999999999999999999865

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.14  E-value=1.3e-06  Score=84.30  Aligned_cols=35  Identities=31%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++||+||||||+|+++|+.|++.|++|+|||++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            35899999999999999999999999999999764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.14  E-value=2.1e-05  Score=75.48  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+++|||||+.|+-+|..|++.|.+|+++++.+.+...                  +..+                   
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~------------------~~~~-------------------  212 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR------------------FDQD-------------------  212 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH-------------------
Confidence            358999999999999999999999999999987632110                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEE-EcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVN-LADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~-~~~g~~~~ad~vV~AdG~~  161 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.++++ +.|. +.+|+ +.+|.||.|.|..
T Consensus       213 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          213 ---------------------M-RRGLHAAMEEK--GIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence                                 0 12344444443  7899999999999987554 6788 88887 9999999999986


Q ss_pred             hHh
Q 015331          162 SVV  164 (409)
Q Consensus       162 s~v  164 (409)
                      +..
T Consensus       268 p~~  270 (463)
T 4dna_A          268 PNT  270 (463)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            643

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.13  E-value=2.5e-06  Score=82.43  Aligned_cols=56  Identities=14%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhhCCCCeEEeC--ceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331          107 RSLLMEALERELPSGTIRYS--SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV  164 (409)
Q Consensus       107 r~~l~~~l~~~~~~~~i~~~--~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v  164 (409)
                      -..+.+.|.+.+...+|+++  ++|++|+.++++|  ++.+|+++.||.||.|.......
T Consensus       215 ~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~  272 (484)
T 4dsg_A          215 TGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLL  272 (484)
T ss_dssp             THHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHH
Confidence            35667777777754589999  4699999887765  45788889999999998765543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.13  E-value=3e-05  Score=70.09  Aligned_cols=93  Identities=8%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  181 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA-----------------------------------------  181 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSC-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCC-----------------------------------------
Confidence            358999999999999999999999999999987632100                                         


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEc---CCC--EEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLA---DGA--VFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~---~g~--~~~ad~vV~A  157 (409)
                                              ..+.+.|.+ ..+++++.++++.+++.+++.+ .|.+.   +|+  ++.+|.||.|
T Consensus       182 ------------------------~~~~~~l~~-~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  236 (311)
T 2q0l_A          182 ------------------------PITLEHAKN-NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIF  236 (311)
T ss_dssp             ------------------------HHHHHHHHT-CTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ------------------------HHHHHHHhh-CCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEE
Confidence                                    012222322 1378999999999998875543 45554   565  6899999999


Q ss_pred             CCCch
Q 015331          158 DGVNS  162 (409)
Q Consensus       158 dG~~s  162 (409)
                      .|...
T Consensus       237 ~G~~p  241 (311)
T 2q0l_A          237 VGYDV  241 (311)
T ss_dssp             SCEEE
T ss_pred             ecCcc
Confidence            99643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.12  E-value=1.2e-05  Score=73.52  Aligned_cols=92  Identities=14%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence            35799999999999999999999999999998764211                                          


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEcC-----CCEEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLAD-----GAVFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~~-----g~~~~ad~vV~A  157 (409)
                                             ...+.+.+.+. .+++++.+++|.+++.+++.+. |.+.+     +.++.+|.||.|
T Consensus       211 -----------------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a  266 (338)
T 3itj_A          211 -----------------------STIMQKRAEKN-EKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYA  266 (338)
T ss_dssp             -----------------------CHHHHHHHHHC-TTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEEC
T ss_pred             -----------------------CHHHHHHHHhc-CCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEE
Confidence                                   01123333322 3789999999999998776433 66654     357899999999


Q ss_pred             CCCc
Q 015331          158 DGVN  161 (409)
Q Consensus       158 dG~~  161 (409)
                      .|..
T Consensus       267 ~G~~  270 (338)
T 3itj_A          267 IGHT  270 (338)
T ss_dssp             SCEE
T ss_pred             eCCC
Confidence            9964

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.12  E-value=1.4e-05  Score=77.01  Aligned_cols=100  Identities=22%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+...                  +..+                   
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------  222 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------VDEQ-------------------  222 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------cCHH-------------------
Confidence            357999999999999999999999999999987642110                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGV  160 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~  160 (409)
                                           + ...+.+.|.+.  +++++.+++|.+++.+++.+.+.+.++   .++.+|.||.|.|.
T Consensus       223 ---------------------~-~~~l~~~l~~~--Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~  278 (476)
T 3lad_A          223 ---------------------V-AKEAQKILTKQ--GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR  278 (476)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred             ---------------------H-HHHHHHHHHhC--CCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence                                 0 12234444443  789999999999998888888888765   57899999999998


Q ss_pred             chHh
Q 015331          161 NSVV  164 (409)
Q Consensus       161 ~s~v  164 (409)
                      ....
T Consensus       279 ~p~~  282 (476)
T 3lad_A          279 RPVT  282 (476)
T ss_dssp             EECC
T ss_pred             cccC
Confidence            6543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.11  E-value=1.8e-06  Score=85.75  Aligned_cols=40  Identities=30%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      |+.++||+|||||++|+++|+.|+++|++|+|||+.+...
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            4456899999999999999999999999999999987543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.10  E-value=1.9e-05  Score=75.84  Aligned_cols=97  Identities=24%  Similarity=0.322  Sum_probs=73.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+....                 +.                      
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~d----------------------  213 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL-----------------ED----------------------  213 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS-----------------CC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC-----------------CC----------------------
Confidence            579999999999999999999999999999876421110                 00                      


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC-CeEEEEEc--CCC--EEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG-LFKLVNLA--DGA--VFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~-~~~~v~~~--~g~--~~~ad~vV~AdG  159 (409)
                                             .++.+.+.+.+. ++++.+++|.+++.++ +.+.|.+.  +|+  ++.+|.||.|.|
T Consensus       214 -----------------------~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G  269 (466)
T 3l8k_A          214 -----------------------QDIVNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAG  269 (466)
T ss_dssp             -----------------------HHHHHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCC
T ss_pred             -----------------------HHHHHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcC
Confidence                                   112223333332 7899999999998877 78888887  565  799999999999


Q ss_pred             CchHh
Q 015331          160 VNSVV  164 (409)
Q Consensus       160 ~~s~v  164 (409)
                      .....
T Consensus       270 ~~p~~  274 (466)
T 3l8k_A          270 RRPVI  274 (466)
T ss_dssp             EEECC
T ss_pred             CCccc
Confidence            87644

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.08  E-value=2.5e-05  Score=77.41  Aligned_cols=105  Identities=24%  Similarity=0.383  Sum_probs=76.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+...                  +..+                   
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------  229 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP------------------IDYE-------------------  229 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc------------------CCHH-------------------
Confidence            358999999999999999999999999999987642210                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.+.  +++++.+++|..++.+++  .|.+.+|+++.+|.||.|.|..+.
T Consensus       230 ---------------------~-~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          230 ---------------------M-AAYVHEHMKNH--DVELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             ---------------------H-HHHHHHHHHHc--CCEEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence                                 0 12334444443  789999999999987655  466788889999999999998654


Q ss_pred             --hHhHhCCC
Q 015331          164 --VAKWLGFK  171 (409)
Q Consensus       164 --vr~~lg~~  171 (409)
                        +.+.+|+.
T Consensus       284 ~~~l~~~g~~  293 (588)
T 3ics_A          284 SSLAKGAGLA  293 (588)
T ss_dssp             CHHHHHTTCC
T ss_pred             hHHHHhcCce
Confidence              33444543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.08  E-value=1.8e-06  Score=83.59  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=32.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLES   35 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      |++++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            6667899999999999999999999 9999999994

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.08  E-value=2.9e-06  Score=81.13  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+||||||+|+++|+.|+++|++|+|||+.+.+
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            479999999999999999999999999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=9e-06  Score=75.53  Aligned_cols=100  Identities=19%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      +.+             +                    
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~~-------------~--------------------  184 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE-------------E--------------------  184 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH-------------H--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CCH-------------H--------------------
Confidence            5899999999999999999999999999998774321      000             0                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-  163 (409)
                                          + ...+.+.|.+.  +++++.+++|.+++  .+  .|.+.+|+ +.+|.||.|.|..+. 
T Consensus       185 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          185 --------------------L-SNMIKDMLEET--GVKFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             --------------------H-HHHHHHHHHHT--TEEEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEEECC
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCCcCH
Confidence                                0 12233444443  78999999999987  22  36677887 999999999998764 


Q ss_pred             -hHhHhCCC
Q 015331          164 -VAKWLGFK  171 (409)
Q Consensus       164 -vr~~lg~~  171 (409)
                       +.+.+++.
T Consensus       237 ~ll~~~gl~  245 (367)
T 1xhc_A          237 DLARRSGIH  245 (367)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCCC
Confidence             33444544

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.06  E-value=4.2e-06  Score=76.71  Aligned_cols=34  Identities=35%  Similarity=0.582  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +||+|||||+||+.+|+.|+++|.+|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5999999999999999999999999999998873

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.04  E-value=8.9e-06  Score=78.13  Aligned_cols=136  Identities=11%  Similarity=0.128  Sum_probs=77.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcce----eEEechhHHHHHHHcCCchHHHhhcccccCeEE
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGF----AITLWTNAWRALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++.+.+.....    ...+.+...+.+..+  .+.........     
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~~~-----  299 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSR--EHAERERLLRE-----  299 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHS--CHHHHHHHHHH-----
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcC--CHHHHHHHHHH-----
Confidence            45899999999999999999998  899999999886432110    001112222222222  11110000000     


Q ss_pred             EeccCCcccccccccccCCCCCccccccCHHHHHHHHHhh---CCCCeEEeCceEEEEEEeCCeEEEEEc---CCC--EE
Q 015331           78 ASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERE---LPSGTIRYSSKVVSVEESGLFKLVNLA---DGA--VF  149 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~---~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~--~~  149 (409)
                          .    ....+.      ......+ .........+.   -.+++++.+++|+.++.+++.+.|++.   +|+  ++
T Consensus       300 ----~----~~~~~~------~~~~~~~-~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~  364 (463)
T 3s5w_A          300 ----Y----HNTNYS------VVDTDLI-ERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVE  364 (463)
T ss_dssp             ----T----GGGTSS------CBCHHHH-HHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             ----h----hccCCC------cCCHHHH-HHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEE
Confidence                0    000000      0000000 11111111111   147899999999999999888888887   665  48


Q ss_pred             ecCEEEEcCCCc
Q 015331          150 KTKVLIGCDGVN  161 (409)
Q Consensus       150 ~ad~vV~AdG~~  161 (409)
                      .+|.||.|+|..
T Consensus       365 ~~D~Vv~AtG~~  376 (463)
T 3s5w_A          365 TYDAVILATGYE  376 (463)
T ss_dssp             EESEEEECCCEE
T ss_pred             ECCEEEEeeCCC
Confidence            999999999965

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.03  E-value=4.5e-05  Score=73.52  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+-..                  +..++                   
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~~~-------------------  230 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------FDSMI-------------------  230 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCHHH-------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc------------------cCHHH-------------------
Confidence            58999999999999999999999999999987642110                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe--EEEEEcC---C----CEEecCEEE
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF--KLVNLAD---G----AVFKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~--~~v~~~~---g----~~~~ad~vV  155 (409)
                                            ...+.+.|.+.  +++++.+++|..++.++++  +.+.+.+   +    .++.+|.||
T Consensus       231 ----------------------~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi  286 (478)
T 3dk9_A          231 ----------------------STNCTEELENA--GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL  286 (478)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred             ----------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEE
Confidence                                  12344444443  7899999999999877554  6677765   2    578999999


Q ss_pred             EcCCCchH
Q 015331          156 GCDGVNSV  163 (409)
Q Consensus       156 ~AdG~~s~  163 (409)
                      .|.|....
T Consensus       287 ~a~G~~p~  294 (478)
T 3dk9_A          287 WAIGRVPN  294 (478)
T ss_dssp             ECSCEEES
T ss_pred             EeeccccC
Confidence            99998654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.03  E-value=4e-06  Score=84.61  Aligned_cols=37  Identities=32%  Similarity=0.522  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+++|+.|+++|++|+|||+++..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999999999999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=4e-06  Score=81.34  Aligned_cols=34  Identities=21%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++||+||||||+|+++|..|++.|.+|+|||+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999985

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.00  E-value=3e-05  Score=71.87  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+....               +                   +. .  
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~---------------~-------------------d~-~--  209 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD---------------A-------------------DP-S--  209 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC--------------------------------------------C-T--
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC---------------C-------------------CC-C--
Confidence            489999999999999999999999999999876421100               0                   00 0  


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCC-CeEEeCceEEEEEEeCCeEEEEEcCCCEEe-cCEEEEcCCCch
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS-GTIRYSSKVVSVEESGLFKLVNLADGAVFK-TKVLIGCDGVNS  162 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~-ad~vV~AdG~~s  162 (409)
                          ..++       .    -.+..+.+.|.+  .+ ++++.+++|..++.+++.+.|.+.+|+++. +|.||.|+|...
T Consensus       210 ----~~~~-------~----~~~~~l~~~l~~--~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          210 ----VRLS-------P----YTRQRLGNVIKQ--GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             ----TSCC-------H----HHHHHHHHHHHT--TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCG
T ss_pred             ----ccCC-------H----HHHHHHHHHHhh--CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCC
Confidence                0000       0    002233444433  24 899999999999877778888888887665 599999999654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.00  E-value=4.6e-05  Score=69.34  Aligned_cols=92  Identities=16%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN------------------------------------------  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcc------------------------------------------
Confidence            57999999999999999999999999999987642100                                          


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CCC--EEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DGA--VFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~--~~~ad~vV~AdG  159 (409)
                                             ..+.+.+.+ ..+++++.+++|+++..++....|.+.   +|+  ++.+|.||.|.|
T Consensus       191 -----------------------~~~~~~l~~-~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  246 (325)
T 2q7v_A          191 -----------------------KVAQARAFA-NPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIG  246 (325)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             -----------------------hHHHHHHHh-cCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccC
Confidence                                   011222222 137899999999999876443345554   565  689999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ...
T Consensus       247 ~~p  249 (325)
T 2q7v_A          247 HVP  249 (325)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.98  E-value=4.8e-05  Score=69.02  Aligned_cols=91  Identities=12%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~------------------------------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE------------------------------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC------------------------------------------
Confidence            57999999999999999999999999999976532100                                          


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEc---CCC--EEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLA---DGA--VFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~---~g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.+.+  .+++++++++|.++..+++ ...|.+.   +|+  ++.+|.||.|.
T Consensus       194 -----------------------~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  248 (319)
T 3cty_A          194 -----------------------NAYVQEIKK--RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYV  248 (319)
T ss_dssp             -----------------------HHHHHHHHH--TTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECC
T ss_pred             -----------------------HHHHHHHhc--CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEee
Confidence                                   012223332  2789999999999987755 2235443   564  68999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |..+
T Consensus       249 G~~p  252 (319)
T 3cty_A          249 GLIP  252 (319)
T ss_dssp             CEEE
T ss_pred             CCcc
Confidence            9653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.97  E-value=5.2e-05  Score=69.24  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+...                    +..                   
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~--------------------~~~-------------------  193 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH--------------------EAS-------------------  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC--------------------HHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc--------------------HHH-------------------
Confidence            58999999999999999999999999999987642110                    000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~AdG  159 (409)
                                            ...+.+.+.+.  +++++.+++|.+++.+++...|.+.   +|  .++.+|.||.|.|
T Consensus       194 ----------------------~~~l~~~l~~~--gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2zbw_A          194 ----------------------VKELMKAHEEG--RLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAG  249 (335)
T ss_dssp             ----------------------HHHHHHHHHTT--SSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ----------------------HHHHHhccccC--CeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeec
Confidence                                  01233344332  7899999999999885543355554   66  4789999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ..+
T Consensus       250 ~~p  252 (335)
T 2zbw_A          250 YIT  252 (335)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.93  E-value=7.6e-05  Score=67.58  Aligned_cols=93  Identities=13%  Similarity=0.278  Sum_probs=70.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  192 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ-----------------------------------------  192 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSC-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcC-----------------------------------------
Confidence            358999999999999999999999999999987642210                                         


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---CC--EEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---GA--VFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                              ..+.+.+.+ ..+++++.+++|.+++.++....|.+.+   |+  ++.+|.||.|.
T Consensus       193 ------------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~  247 (323)
T 3f8d_A          193 ------------------------PIYVETVKK-KPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEI  247 (323)
T ss_dssp             ------------------------HHHHHHHHT-CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             ------------------------HHHHHHHHh-CCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEE
Confidence                                    011122222 2378999999999998876655576665   65  78999999999


Q ss_pred             CCch
Q 015331          159 GVNS  162 (409)
Q Consensus       159 G~~s  162 (409)
                      |...
T Consensus       248 G~~p  251 (323)
T 3f8d_A          248 GFDP  251 (323)
T ss_dssp             CEEC
T ss_pred             CCCC
Confidence            9754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.93  E-value=6.3e-05  Score=67.85  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=66.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                     +                     
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~---------------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D---------------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---------------------C---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc---------------------c---------------------
Confidence            5799999999999999999999999999998764210                     0                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcC---CC--EEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLAD---GA--VFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.|.+ ..+++++.+++++++..+++.+ .|.+.+   |+  ++.+|.||.|.
T Consensus       183 -----------------------~~~~~~l~~-~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  238 (310)
T 1fl2_A          183 -----------------------QVLQDKLRS-LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQI  238 (310)
T ss_dssp             -----------------------HHHHHHHHT-CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             -----------------------HHHHHHHhh-CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEee
Confidence                                   012233332 2378999999999998765543 455543   43  68999999999


Q ss_pred             CCc
Q 015331          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       239 G~~  241 (310)
T 1fl2_A          239 GLL  241 (310)
T ss_dssp             CEE
T ss_pred             CCc
Confidence            954

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.93  E-value=4.9e-05  Score=72.64  Aligned_cols=105  Identities=23%  Similarity=0.371  Sum_probs=72.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+....                 +.+                     
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~---------------------  190 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS-----------------FDK---------------------  190 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------cCH---------------------
Confidence            489999999999999999999999999999876421100                 000                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-  163 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-  163 (409)
                                      .   + ...+.+.|.+   .++++.++.|..++.++ .+...+.++.++.+|.||.|.|.... 
T Consensus       191 ----------------~---~-~~~l~~~l~~---~v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~  246 (449)
T 3kd9_A          191 ----------------E---V-TDILEEKLKK---HVNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKPNI  246 (449)
T ss_dssp             ----------------H---H-HHHHHHHHTT---TSEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEECC
T ss_pred             ----------------H---H-HHHHHHHHHh---CcEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCccCH
Confidence                            0   0 1123333332   27899999999998665 34333556778999999999998653 


Q ss_pred             -hHhHhCCC
Q 015331          164 -VAKWLGFK  171 (409)
Q Consensus       164 -vr~~lg~~  171 (409)
                       +.+.+|+.
T Consensus       247 ~l~~~~gl~  255 (449)
T 3kd9_A          247 ELAKQLGVR  255 (449)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCcc
Confidence             34445543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.92  E-value=3e-05  Score=71.75  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=68.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                    +.+                   
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--------------------~~~-------------------  204 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--------------------GKT-------------------  204 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--------------------SHH-------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--------------------HHH-------------------
Confidence            47999999999999999999999999999987643110                    000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEE--cCC--CEEecCEEEEcCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNL--ADG--AVFKTKVLIGCDG  159 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~--~~g--~~~~ad~vV~AdG  159 (409)
                                            ...+.+.+.+.  +++++++++|.+++.+++.+ .|.+  .+|  .++.+|.||.|.|
T Consensus       205 ----------------------~~~l~~~~~~~--gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G  260 (360)
T 3ab1_A          205 ----------------------AHEVERARANG--TIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIG  260 (360)
T ss_dssp             ----------------------HHSSHHHHHHT--SEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCC
T ss_pred             ----------------------HHHHHHHhhcC--ceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCC
Confidence                                  00122222222  68999999999998876643 3444  367  4789999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ..+
T Consensus       261 ~~p  263 (360)
T 3ab1_A          261 FKS  263 (360)
T ss_dssp             BCC
T ss_pred             CCC
Confidence            653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.92  E-value=9.3e-05  Score=66.77  Aligned_cols=92  Identities=16%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  185 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA-----------------------------------------  185 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC-----------------------------------------
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC-----------------------------------------
Confidence            357999999999999999999999999999987643110                                         


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEc--CCC--EEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLA--DGA--VFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~--~g~--~~~ad~vV~Ad  158 (409)
                                              ..+.+.+.+ ..+++++++++|.+++.+++.+ .|.+.  +|+  ++.+|.||.|.
T Consensus       186 ------------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~  240 (315)
T 3r9u_A          186 ------------------------PSTVEKVKK-NEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFV  240 (315)
T ss_dssp             ------------------------HHHHHHHHH-CTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECS
T ss_pred             ------------------------HHHHHHHHh-cCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEE
Confidence                                    011122222 2378999999999998887543 24444  775  78999999999


Q ss_pred             CCc
Q 015331          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       241 G~~  243 (315)
T 3r9u_A          241 GLN  243 (315)
T ss_dssp             CEE
T ss_pred             cCC
Confidence            964

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.92  E-value=6.2e-06  Score=79.07  Aligned_cols=33  Identities=24%  Similarity=0.589  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            589999999999999999999999999999983

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.92  E-value=6.9e-06  Score=79.44  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLES   35 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      .++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999993

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.91  E-value=7.3e-05  Score=72.13  Aligned_cols=97  Identities=22%  Similarity=0.209  Sum_probs=70.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+++|||||+.|+-+|..|++.|.+|+++++......                   +..+                    
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~--------------------  228 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG-------------------FDQQ--------------------  228 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT-------------------SCHH--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc-------------------cCHH--------------------
Confidence            5799999999999999999999999999997421100                   0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCC-----EEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGA-----VFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~-----~~~ad~vV~Ad  158 (409)
                                          + ...+.+.|.+.  +++++.+++|..++..++ .+.|++.++.     ++.+|.||.|.
T Consensus       229 --------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~  285 (483)
T 3dgh_A          229 --------------------M-AELVAASMEER--GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAI  285 (483)
T ss_dssp             --------------------H-HHHHHHHHHHT--TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECS
T ss_pred             --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECc
Confidence                                0 12234444443  789999999999988654 4677776654     78999999999


Q ss_pred             CCchH
Q 015331          159 GVNSV  163 (409)
Q Consensus       159 G~~s~  163 (409)
                      |....
T Consensus       286 G~~p~  290 (483)
T 3dgh_A          286 GRKGL  290 (483)
T ss_dssp             CEEEC
T ss_pred             ccccC
Confidence            98654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.91  E-value=6.5e-05  Score=71.42  Aligned_cols=95  Identities=15%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                  ..++                   
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~------------------~d~~-------------------  189 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD-------------------  189 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT------------------SCGG-------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc------------------ccch-------------------
Confidence            358999999999999999999999999999987642110                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV  163 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~  163 (409)
                                           + ...+.+.|.++  +++++.+++|..++..    .+.+.+|+++.+|.||.|.|....
T Consensus       190 ---------------------~-~~~~~~~l~~~--gV~i~~~~~v~~~~~~----~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          190 ---------------------M-NQPILDELDKR--EIPYRLNEEINAINGN----EITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             ---------------------G-GHHHHHHHHHT--TCCEEESCCEEEEETT----EEEETTSCEEECSEEEECCCEEES
T ss_pred             ---------------------h-HHHHHHHhhcc--ceEEEeccEEEEecCC----eeeecCCeEEeeeeEEEEeceecC
Confidence                                 0 12344555544  7899999999887532    477889999999999999997653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.86  E-value=1.2e-05  Score=81.64  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+||||||||+++|..|+++|++|+|||+.+.+
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            479999999999999999999999999999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.85  E-value=9.3e-06  Score=77.66  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-c------CCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-L------GIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~------g~~V~v~E~~~~~   39 (409)
                      +++||+||||||+|+++|..|++ .      |.+|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            36799999999999999999999 7      9999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.85  E-value=9.8e-05  Score=71.31  Aligned_cols=98  Identities=18%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++......                   +..+                   
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~-------------------  226 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG-------------------FDQQ-------------------  226 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc-------------------CCHH-------------------
Confidence            34799999999999999999999999999997531100                   0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe-CCeEEEEEcC---CC--EEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES-GLFKLVNLAD---GA--VFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~-~~~~~v~~~~---g~--~~~ad~vV~A  157 (409)
                                           + ...+.+.|.+.  +++++.++.+..++.. ++.+.|.+.+   |+  ++.+|.||.|
T Consensus       227 ---------------------~-~~~l~~~l~~~--gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a  282 (488)
T 3dgz_A          227 ---------------------M-SSLVTEHMESH--GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWA  282 (488)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEc
Confidence                                 0 12233444443  7899999999999874 4456666654   44  4789999999


Q ss_pred             CCCchH
Q 015331          158 DGVNSV  163 (409)
Q Consensus       158 dG~~s~  163 (409)
                      .|....
T Consensus       283 ~G~~p~  288 (488)
T 3dgz_A          283 IGRVPE  288 (488)
T ss_dssp             SCEEES
T ss_pred             ccCCcc
Confidence            998654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.85  E-value=0.00012  Score=66.63  Aligned_cols=93  Identities=15%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------  196 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------------------------------------  196 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc------------------------------------------
Confidence            35899999999999999999999999999998764310                                          


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC--eE-EEEEc---CC--CEEecCEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL--FK-LVNLA---DG--AVFKTKVLI  155 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~--~~-~v~~~---~g--~~~~ad~vV  155 (409)
                                             ...+.+.+.+ -.+++++++++|.+++.+++  .+ .|.+.   +|  .++.+|.||
T Consensus       197 -----------------------~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi  252 (333)
T 1vdc_A          197 -----------------------SKIMQQRALS-NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLF  252 (333)
T ss_dssp             -----------------------CHHHHHHHHT-CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             -----------------------cHHHHHHHHh-CCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEE
Confidence                                   0011112221 13789999999999987764  32 25443   34  478999999


Q ss_pred             EcCCCch
Q 015331          156 GCDGVNS  162 (409)
Q Consensus       156 ~AdG~~s  162 (409)
                      .|.|...
T Consensus       253 ~a~G~~p  259 (333)
T 1vdc_A          253 FAIGHEP  259 (333)
T ss_dssp             ECSCEEE
T ss_pred             EEeCCcc
Confidence            9999643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.82  E-value=1.2e-05  Score=79.81  Aligned_cols=34  Identities=26%  Similarity=0.543  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      .++||+||||||||+++|..|+++|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999974

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.80  E-value=1.3e-05  Score=78.12  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|||+||||||+|+.+|..+++.|.+|+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            38999999999999999999999999999998653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.80  E-value=2e-05  Score=79.04  Aligned_cols=37  Identities=24%  Similarity=0.623  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4799999999999999999999999999999987653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.79  E-value=2.4e-05  Score=80.07  Aligned_cols=37  Identities=24%  Similarity=0.623  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .++|+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            4699999999999999999999999999999987653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.79  E-value=0.00011  Score=71.68  Aligned_cols=35  Identities=14%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35899999999999999999999999999999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.78  E-value=4.4e-05  Score=74.65  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||+|.+|+-+|..|++.+.+|+|+++.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            58999999999999999999999999999999863

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.78  E-value=1.9e-05  Score=79.46  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ++||+||||||||+++|..|+++|++|+|||+.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            579999999999999999999999999999998754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.75  E-value=1.9e-05  Score=77.42  Aligned_cols=36  Identities=33%  Similarity=0.490  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+||||||++|+.+|..|++.|++|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            468999999999999999999999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.74  E-value=0.00011  Score=67.15  Aligned_cols=92  Identities=14%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                                       .. 
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---------------------------------------~~-  194 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---------------------------------------SK-  194 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---------------------------------------CT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---------------------------------------cH-
Confidence            35899999999999999999999999999998764210                                       00 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~Ad  158 (409)
                                               .+.+.+.+ -.+++++.+++|.+++.+++...|.+.   +|  .++.+|.||.|.
T Consensus       195 -------------------------~~~~~~~~-~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~  248 (335)
T 2a87_A          195 -------------------------IMLDRARN-NDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAI  248 (335)
T ss_dssp             -------------------------THHHHHHH-CTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECS
T ss_pred             -------------------------HHHHHHhc-cCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEcc
Confidence                                     01111222 237899999999999876543234333   34  478999999999


Q ss_pred             CCc
Q 015331          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       249 G~~  251 (335)
T 2a87_A          249 GHE  251 (335)
T ss_dssp             CEE
T ss_pred             CCc
Confidence            954

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.72  E-value=1.8e-05  Score=77.22  Aligned_cols=36  Identities=39%  Similarity=0.511  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~~   38 (409)
                      ++||+||||||++|+.+|..|++ .|++|+|+|+.+.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46899999999999999999997 7899999999863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.71  E-value=2.7e-05  Score=74.51  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~   39 (409)
                      .++||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            4579999999999999999999998  999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.70  E-value=7.5e-05  Score=67.94  Aligned_cols=91  Identities=13%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                    +.                   
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--------------------~~-------------------  194 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--------------------EH-------------------  194 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--------------------HH-------------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--------------------HH-------------------
Confidence            357999999999999999999999999999987642110                    00                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC-----CCEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD-----GAVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~-----g~~~~ad~vV~Ad  158 (409)
                                                ..+.|.+  .+++++.+++|..++.+++...|.+.+     +.++.+|.||.|.
T Consensus       195 --------------------------~~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~  246 (332)
T 3lzw_A          195 --------------------------SVENLHA--SKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNY  246 (332)
T ss_dssp             --------------------------HHHHHHH--SSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECC
T ss_pred             --------------------------HHHHHhc--CCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEee
Confidence                                      0111222  278999999999998776655566655     3468999999999


Q ss_pred             CCc
Q 015331          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       247 G~~  249 (332)
T 3lzw_A          247 GFV  249 (332)
T ss_dssp             CEE
T ss_pred             ccC
Confidence            954

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.67  E-value=3.3e-05  Score=81.27  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      .+||+||||||||+++|..|+++|+ +|+|||+.+.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4699999999999999999999999 79999998643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.65  E-value=1.5e-05  Score=77.88  Aligned_cols=35  Identities=34%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|+||||||.||+.+|..|++ |.+|+|+|+.+.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35899999999999999999999 999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.63  E-value=0.00015  Score=64.69  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||+|++|+-+|..|++.| +|+++++.+.        .             +                      
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~--------~-------------~----------------------  176 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV--------E-------------P----------------------  176 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC--------C-------------C----------------------
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC--------C-------------C----------------------
Confidence            358999999999999999999999 9999986542        0             0                      


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                                             ...+.+.|.+.  +++++. ++|.+++.++   .|.+.+|+++.+|.||.|.|..
T Consensus       177 -----------------------~~~~~~~l~~~--gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          177 -----------------------DADQHALLAAR--GVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             -----------------------CHHHHHHHHHT--TCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEE
T ss_pred             -----------------------CHHHHHHHHHC--CcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcc
Confidence                                   01123334333  678874 8888886533   6888899999999999999964

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.61  E-value=0.00048  Score=66.95  Aligned_cols=97  Identities=16%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++......                   +.++                    
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d~~--------------------  251 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FDQD--------------------  251 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCHH--------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc-------------------CCHH--------------------
Confidence            4799999999999999999999999999997421000                   0000                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC----CeEEEE--EcCCC---EEecCEEE
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG----LFKLVN--LADGA---VFKTKVLI  155 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~----~~~~v~--~~~g~---~~~ad~vV  155 (409)
                                          + ...+.+.|.+.  +++++.++++..++..+    +.+.+.  ..++.   ++.+|.||
T Consensus       252 --------------------~-~~~~~~~l~~~--GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi  308 (519)
T 3qfa_A          252 --------------------M-ANKIGEHMEEH--GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM  308 (519)
T ss_dssp             --------------------H-HHHHHHHHHHT--TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEE
T ss_pred             --------------------H-HHHHHHHHHHC--CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEE
Confidence                                0 12233444443  78999999988887543    344444  34552   46899999


Q ss_pred             EcCCCchH
Q 015331          156 GCDGVNSV  163 (409)
Q Consensus       156 ~AdG~~s~  163 (409)
                      .|.|....
T Consensus       309 ~a~G~~p~  316 (519)
T 3qfa_A          309 LAIGRDAC  316 (519)
T ss_dssp             ECSCEEES
T ss_pred             EecCCccc
Confidence            99998654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.60  E-value=0.00014  Score=69.38  Aligned_cols=35  Identities=11%  Similarity=0.079  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~   38 (409)
                      ..+|+|||||.+|+-+|..|++.|.+ |+|+++.+.
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            35799999999999999999999999 999998764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.59  E-value=2.9e-05  Score=77.47  Aligned_cols=36  Identities=33%  Similarity=0.533  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC--------CceEEEeCCC-cc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG--------IRSLVLESSE-SL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g--------~~V~v~E~~~-~~   39 (409)
                      ..+|+|||||++||++|+.|+++|        ++|+|||+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            368999999999999999999998        9999999988 65

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.53  E-value=6e-05  Score=73.13  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|++|||+|++|+.+|..|++.|.+|+|+|+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            46899999999999999999999999999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.52  E-value=0.00041  Score=67.06  Aligned_cols=50  Identities=26%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC----EEecCEEEEcCCCc
Q 015331          110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA----VFKTKVLIGCDGVN  161 (409)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~----~~~ad~vV~AdG~~  161 (409)
                      +.+.|.+.  +++++.+++|++++.++....+...+|+    ++.+|+||-|.|..
T Consensus       278 ~~~~L~~~--GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          278 AQSHLENT--SIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHT--TCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHhc--ceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            44555544  8999999999998754433444556664    68999999999964

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.51  E-value=4.8e-05  Score=74.67  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      +.+|+||||||.||+.+|..|++.| .+|+|+|+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4689999999999999999999987 79999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.50  E-value=0.0014  Score=65.00  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+++.. ..+.                  +.+++                   
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l~~------------------~d~~~-------------------  328 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI-LLRG------------------FDQQM-------------------  328 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT------------------SCHHH-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc-CcCc------------------CCHHH-------------------
Confidence            479999999999999999999999999999762 1100                  00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe------C---CeEEEE--EcCCCEEe--c
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES------G---LFKLVN--LADGAVFK--T  151 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~------~---~~~~v~--~~~g~~~~--a  151 (409)
                                            ...+.+.|.+.  +++++.++.+..+...      +   +.+.+.  +.+|+++.  +
T Consensus       329 ----------------------~~~~~~~l~~~--gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~  384 (598)
T 2x8g_A          329 ----------------------AEKVGDYMENH--GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEF  384 (598)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEE
T ss_pred             ----------------------HHHHHHHHHhC--CCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccC
Confidence                                  11233334333  7888899888887643      2   444443  45776555  9


Q ss_pred             CEEEEcCCCchHh
Q 015331          152 KVLIGCDGVNSVV  164 (409)
Q Consensus       152 d~vV~AdG~~s~v  164 (409)
                      |.||.|.|.....
T Consensus       385 D~vi~a~G~~p~~  397 (598)
T 2x8g_A          385 ETVIFAVGREPQL  397 (598)
T ss_dssp             SEEEECSCEEECG
T ss_pred             CEEEEEeCCcccc
Confidence            9999999987543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.49  E-value=0.00015  Score=70.97  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+-+|..|++.+.+|+||+|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35899999999999999999999999999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.48  E-value=0.00076  Score=65.56  Aligned_cols=91  Identities=16%  Similarity=0.264  Sum_probs=66.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+.+..                     +                     
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------------------~---------------------  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D---------------------  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------------------C---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------------------C---------------------
Confidence            5899999999999999999999999999997764210                     0                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcC---CC--EEecCEEEEcC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLAD---GA--VFKTKVLIGCD  158 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~---g~--~~~ad~vV~Ad  158 (409)
                                             ..+.+.|. ..++++++.++.++.+..+++++ .|.+.+   |+  ++.+|.||.|.
T Consensus       394 -----------------------~~l~~~l~-~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~  449 (521)
T 1hyu_A          394 -----------------------QVLQDKVR-SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQI  449 (521)
T ss_dssp             -----------------------HHHHHHHT-TCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred             -----------------------HHHHHHHh-cCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECc
Confidence                                   01222222 22478999999999998765544 355543   43  68899999999


Q ss_pred             CCc
Q 015331          159 GVN  161 (409)
Q Consensus       159 G~~  161 (409)
                      |..
T Consensus       450 G~~  452 (521)
T 1hyu_A          450 GLL  452 (521)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            954

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.48  E-value=0.00035  Score=66.93  Aligned_cols=35  Identities=14%  Similarity=0.280  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            35899999999999999999999999999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.47  E-value=7.6e-05  Score=72.35  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|++|||+|++|+.+|..|++.|.+|+|+|+..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            45899999999999999999999999999999876

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.42  E-value=0.0002  Score=72.23  Aligned_cols=96  Identities=9%  Similarity=0.004  Sum_probs=68.9

Q ss_pred             CcEEEEC--CCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVG--AGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIG--gG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .+|+|||  ||.+|+-+|..|++.|.+|+++++.+.+.....                                     .
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~-------------------------------------~  566 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN-------------------------------------N  566 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG-------------------------------------G
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc-------------------------------------c
Confidence            4699999  999999999999999999999997764211000                                     0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE---cCCCEEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL---ADGAVFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~---~~g~~~~ad~vV~AdG  159 (409)
                                           ......+.+.|.+.  +++++.+++|++++.+  .+.+..   .+++++.+|.||.|.|
T Consensus       567 ---------------------~~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~--~~~v~~~~~~~~~~i~aD~VV~A~G  621 (690)
T 3k30_A          567 ---------------------TFEVNRIQRRLIEN--GVARVTDHAVVAVGAG--GVTVRDTYASIERELECDAVVMVTA  621 (690)
T ss_dssp             ---------------------GTCHHHHHHHHHHT--TCEEEESEEEEEEETT--EEEEEETTTCCEEEEECSEEEEESC
T ss_pred             ---------------------chhHHHHHHHHHHC--CCEEEcCcEEEEEECC--eEEEEEccCCeEEEEECCEEEECCC
Confidence                                 00123455555554  7999999999998743  444543   2445799999999999


Q ss_pred             Cch
Q 015331          160 VNS  162 (409)
Q Consensus       160 ~~s  162 (409)
                      ..+
T Consensus       622 ~~p  624 (690)
T 3k30_A          622 RLP  624 (690)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            653

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.41  E-value=7.3e-05  Score=73.35  Aligned_cols=35  Identities=40%  Similarity=0.603  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~   37 (409)
                      +.||+||||||.||+.+|..|++ .+.+|+|+|+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            35899999999999999999997 489999999987

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.39  E-value=0.00026  Score=69.73  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAV   59 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~   59 (409)
                      .+|||+|||+|+.|..+|..|++.|.+|+++||++..+...+...+. ....++++.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~-~l~~w~~~~   62 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFS-GLLSWLKEY   62 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH-HHHHHHHHT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHH-HHHHHHHHh
Confidence            46899999999999999999999999999999999876655544433 344444444

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.36  E-value=0.00013  Score=72.08  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~~   38 (409)
                      .++|++|||+|++|+.+|..|++ .|.+|+|+|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            35899999999999999999999 8999999999864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.35  E-value=6.9e-05  Score=73.37  Aligned_cols=35  Identities=43%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~~   38 (409)
                      .+|+||||||.||+.+|..|++ .|.+|+|+|+.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCc
Confidence            5899999999999999999998 7999999999764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.32  E-value=0.00012  Score=71.71  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~   38 (409)
                      ..+|++|||+|++|+.+|..|++. |.+|+|+|+...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            358999999999999999999998 899999999854

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.03  E-value=0.0018  Score=67.76  Aligned_cols=89  Identities=19%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+..                      .                    
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~----------------------~--------------------  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA----------------------A--------------------  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH----------------------H--------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch----------------------h--------------------
Confidence            5799999999999999999999999999998764210                      0                    


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe-CCe-EEEEEcC-------C--CEEecCE
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES-GLF-KLVNLAD-------G--AVFKTKV  153 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~-~~~-~~v~~~~-------g--~~~~ad~  153 (409)
                                                .+.|.+.  +++++.++.|++++.+ ++. ..|++.+       |  .++.+|.
T Consensus       323 --------------------------~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~  374 (965)
T 2gag_A          323 --------------------------AAQAVAD--GVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADV  374 (965)
T ss_dssp             --------------------------HHHHHHT--TCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSE
T ss_pred             --------------------------HHHHHhC--CeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCE
Confidence                                      0122222  7899999999999873 332 2344443       4  5789999


Q ss_pred             EEEcCCCchH
Q 015331          154 LIGCDGVNSV  163 (409)
Q Consensus       154 vV~AdG~~s~  163 (409)
                      ||.|.|....
T Consensus       375 Vv~a~G~~P~  384 (965)
T 2gag_A          375 LAVAGGFNPV  384 (965)
T ss_dssp             EEEECCEEEC
T ss_pred             EEECCCcCcC
Confidence            9999997653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.97  E-value=0.0013  Score=66.59  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=30.9

Q ss_pred             CcEEEEC--CCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVG--AGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIG--gG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4899999  99999999999999999999999876

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.85  E-value=0.0014  Score=52.45  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35899999999999999999999999999998764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.82  E-value=0.00092  Score=62.28  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            589999999999999999999999999999988653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.0013  Score=51.66  Aligned_cols=35  Identities=20%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35799999999999999999999999999998753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.81  E-value=0.006  Score=61.21  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEEcCCCch
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIGCDGVNS  162 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~s  162 (409)
                      .+.+.|.+.  +++++.+++|..++  +++++++ .+|  .++.+|.||.|.|..+
T Consensus       578 ~~~~~l~~~--GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          578 IHRTTLLSR--GVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHT--TCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHhc--CCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCccc
Confidence            344555543  79999999999987  3455554 566  5799999999999764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.78  E-value=0.0055  Score=58.35  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--------------------CC-ceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--------------------GI-RSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--------------------g~-~V~v~E~~~~~   39 (409)
                      .+|+|||+|.+|+-+|..|++.                    |. +|+|+++....
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            5799999999999999999874                    54 89999988743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.76  E-value=0.0016  Score=50.76  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.71  E-value=0.0037  Score=61.07  Aligned_cols=36  Identities=14%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||+|.+|+-+|..|++.|.+|++++|.+..
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            358999999999999999999999999999988753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.65  E-value=0.0027  Score=50.57  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4589999999999999999999999999999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.64  E-value=0.002  Score=50.45  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +-.|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            34799999999999999999999999999998864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.59  E-value=0.024  Score=53.95  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHH--------------------HcCC-ceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALH--------------------RLGI-RSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~--------------------~~g~-~V~v~E~~~~~   39 (409)
                      .+|+|||||.+|+-+|..|+                    +.|. +|+|+++....
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            58999999999999999999                    5687 79999988743

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.56  E-value=0.0026  Score=56.49  Aligned_cols=38  Identities=13%  Similarity=0.282  Sum_probs=34.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            66667899999999999999999999999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.54  E-value=0.0026  Score=47.89  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      ..+|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            358999999999999999999999 8999999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.49  E-value=0.0029  Score=57.12  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=35.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |++..+|+|||+|-.|..+|..|++.|+ +|.++|+++.
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            7777899999999999999999999998 9999998763

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.48  E-value=0.014  Score=61.48  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||||..|+-+|..|++.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999996 899999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.47  E-value=0.0028  Score=57.98  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||||++|+-+|..|++.| +|+++.+.+
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            58999999999999999999998 799998874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.34  E-value=0.0034  Score=56.47  Aligned_cols=35  Identities=11%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            58999999999999999999999999999988754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.28  E-value=0.0038  Score=57.40  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++.++|+|||+|..|...|..|++.|++|+++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            6666899999999999999999999999999999865

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.21  E-value=0.0055  Score=47.84  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.18  E-value=0.0058  Score=55.20  Aligned_cols=38  Identities=18%  Similarity=0.390  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |+...+|+|||+|-.|..+|..|+..|+ +|.++|.+..
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            6667799999999999999999999998 9999998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.15  E-value=0.0051  Score=50.55  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~   38 (409)
                      ..|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            4799999999999999999999 999999998763

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.10  E-value=0.0042  Score=52.71  Aligned_cols=33  Identities=6%  Similarity=0.223  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|||+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            799999999999999999999999999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.02  E-value=0.0044  Score=55.37  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+++.+|.|||.|..|...|..|+++|++|+++|+++.
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            33456899999999999999999999999999998875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.99  E-value=0.0056  Score=54.96  Aligned_cols=35  Identities=23%  Similarity=0.550  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++...
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            35899999999999999999999999999998664

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.88  E-value=0.0082  Score=54.27  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|||+|..|.+.|..|++.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            689999999999999999999999999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.88  E-value=0.028  Score=54.03  Aligned_cols=38  Identities=42%  Similarity=0.607  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .++||+|||||++||++|+.|+++|++|+|+|+++.+.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            46799999999999999999999999999999987653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.85  E-value=0.0096  Score=53.30  Aligned_cols=34  Identities=15%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.82  E-value=0.017  Score=54.00  Aligned_cols=47  Identities=9%  Similarity=0.047  Sum_probs=36.1

Q ss_pred             HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331          110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +.+.|.+.  +++++.+++|++++.++    |.+.+|+++.+|.||.|.|...
T Consensus       224 ~~~~l~~~--gV~~~~~~~v~~i~~~~----v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          224 VASIYNQL--GIKLVHNFKIKEIREHE----IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHH--TCEEECSCCEEEECSSE----EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHC--CCEEEcCCceEEECCCe----EEECCCCEEeeeEEEECCCCCc
Confidence            33444444  78999999999986532    7788999999999999999643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.80  E-value=0.0077  Score=55.21  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++.++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            55567999999999999999999999999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.76  E-value=0.0074  Score=57.41  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CC-ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL-GI-RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~-~V~v~E~~~~   38 (409)
                      +.++|.|||+|..|+.+|..|+++ |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            456899999999999999999999 99 9999999876

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.75  E-value=0.011  Score=53.51  Aligned_cols=35  Identities=11%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +++|+|||||-.|.++|..|++.|+ +|.++|++..
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3689999999999999999999998 9999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.69  E-value=0.0088  Score=53.65  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|.-|...|..++++|++|+++|.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4899999999999999999999999999998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.66  E-value=0.011  Score=56.15  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|..|+.+|..|+++|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            6899999999999999999999999999998864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.63  E-value=0.012  Score=53.56  Aligned_cols=35  Identities=34%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |+ .++|+|||+|-.|.+.|..|++.|++|++++|.
T Consensus         1 M~-~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            1 MS-LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             -C-CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            54 469999999999999999999999999999974

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.63  E-value=0.013  Score=49.25  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            36899999999999999999999999999998764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.59  E-value=0.027  Score=53.25  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE--cC-----CCEEecCEEEEcCCCc
Q 015331          109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL--AD-----GAVFKTKVLIGCDGVN  161 (409)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~--~~-----g~~~~ad~vV~AdG~~  161 (409)
                      .+.+.|.+.  +++++.+++|++++.  +.+++..  .+     +.++.+|++|.|.|..
T Consensus       213 ~~~~~l~~~--gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          213 ILTKGLKEE--GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             HHHHHHHHT--TCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred             HHHHHHHHC--CCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCc
Confidence            345555544  789999999998864  4444443  23     4578999999998853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.59  E-value=0.01  Score=53.46  Aligned_cols=33  Identities=36%  Similarity=0.394  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.+.|..|++.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            589999999999999999999999999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.56  E-value=0.0091  Score=53.38  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+++++|.|||+|-.|...|..|++.|++|+++++++.
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            77778999999999999999999999999999998753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.54  E-value=0.014  Score=51.84  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.50  E-value=0.015  Score=53.71  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|++|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.49  E-value=0.005  Score=58.61  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC----C--cceeEEechhHHHHHHHcCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR----V--TGFAITLWTNAWRALDAVGIS   62 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~----~--~~~~~~~~~~~~~~l~~~gl~   62 (409)
                      +.++|+|+|+|-.|..+|..|...|++|+|+|+++..-    .  ....+.=.....+.|++.|+.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~   67 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQ   67 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTT
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCC
Confidence            45789999999999999999999999999999986421    1  111122223445677777654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.48  E-value=0.013  Score=52.54  Aligned_cols=33  Identities=27%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999999999999999865

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.46  E-value=0.013  Score=52.23  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.+.|..|++.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999999999999999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.46  E-value=0.012  Score=53.94  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|--|.++|..|++.|++|+++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.45  E-value=0.017  Score=51.95  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.45  E-value=0.015  Score=49.22  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.42  E-value=0.011  Score=55.87  Aligned_cols=35  Identities=23%  Similarity=0.491  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||.|++|+++|..|+++|++|+++|.+..
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            45899999999999999999999999999998764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.39  E-value=0.017  Score=51.91  Aligned_cols=35  Identities=20%  Similarity=0.497  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +..+|+|||+|..|.++|+.|++.|+ +|+++|.++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            35689999999999999999999999 999999873

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.38  E-value=0.016  Score=52.36  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .++|+|||+|-.|.++|..|++.|+  +|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  999999865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.38  E-value=0.015  Score=55.60  Aligned_cols=35  Identities=26%  Similarity=0.532  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|+|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            47999999999999999999999999999998753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.36  E-value=0.013  Score=55.88  Aligned_cols=38  Identities=34%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      |++.++|.|||.|..|+.+|..|++.  |++|+++|+++.
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            65557999999999999999999999  899999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.36  E-value=0.045  Score=52.65  Aligned_cols=58  Identities=24%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             HHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH--hHhHhCCC
Q 015331          112 EALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV--VAKWLGFK  171 (409)
Q Consensus       112 ~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~--vr~~lg~~  171 (409)
                      +.+.+.  +++++.++.|.+++.++....|.+.+|.++.+|.||.|.|..+.  +.+.+|..
T Consensus       265 ~~l~~~--GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          265 QELERW--GIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHH--TCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhC--CcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            444443  78999999999998765555677888889999999999998764  34555543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.31  E-value=0.016  Score=55.03  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|.|||.|.+|+++|..|+++|++|++.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3589999999999999999999999999999865

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.30  E-value=0.017  Score=52.99  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.26  E-value=0.019  Score=51.68  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +++|+|||+|-.|.++|+.|+..|.  ++.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5799999999999999999999987  899999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.24  E-value=0.019  Score=51.93  Aligned_cols=38  Identities=11%  Similarity=0.177  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLG----IRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g----~~V~v~E~~~~   38 (409)
                      |++.++|.|||+|-.|.+.|..|.+.|    ++|+++++++.
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            344578999999999999999999999    79999998763

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.23  E-value=0.0097  Score=50.55  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEE-EeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLV-LESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v-~E~~~~   38 (409)
                      .++|.|||+|-.|.++|..|++.|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            46899999999999999999999999999 887754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.21  E-value=0.023  Score=51.15  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|..|...|..|++.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.19  E-value=0.022  Score=51.52  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||||-.|..+|..|++.|+ +|.++|.+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            589999999999999999999998 9999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.17  E-value=0.041  Score=53.00  Aligned_cols=34  Identities=15%  Similarity=0.286  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      .+|+|||+|-+|.-++..|++.  +.+|+++=|.+.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            4799999999999999999875  679999988764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.11  E-value=0.012  Score=51.36  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||||.+|+..|..|.+.|.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999999999999999999998543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.09  E-value=0.27  Score=49.11  Aligned_cols=51  Identities=16%  Similarity=0.068  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC------CCEEecCEEEEcCCCc
Q 015331          108 SLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD------GAVFKTKVLIGCDGVN  161 (409)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~------g~~~~ad~vV~AdG~~  161 (409)
                      ..|.+.|.+   +..|++|++|+.|+.++++++|++.+      +.+++||.||.|....
T Consensus       401 ~~l~~~La~---~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~  457 (662)
T 2z3y_A          401 SCVPVALAE---GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLG  457 (662)
T ss_dssp             THHHHHHTT---TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHH
T ss_pred             HHHHHHHHh---cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHH
Confidence            345556655   45899999999999999999998876      5679999999988743

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.09  E-value=0.022  Score=54.35  Aligned_cols=38  Identities=18%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+ +..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            43 346899999999999999999999999999998764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.06  E-value=0.017  Score=54.09  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|..|+.+|..|++ |++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            4689999999999999999998 999999998864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.97  E-value=0.045  Score=49.50  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHH-HHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLT-TSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~-~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|.+|++ +|..|+++|++|.+.|+...
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            57999999999996 89999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.97  E-value=0.028  Score=50.68  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=31.8

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      |+ +..+|+|||+|..|.++|..|+..|+  ++.++|.+.
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            54 35799999999999999999999987  899999754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.95  E-value=0.026  Score=50.53  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|..|...|..|++.|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998763

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.021  Score=50.60  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||+|.-|...|..|+ +|++|+++|+++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            568999999999999999999 9999999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.93  E-value=0.023  Score=53.15  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++..|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            345799999999999999999999999999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.93  E-value=0.026  Score=52.94  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||.|..||.+|..|+++|++|+.+|-++.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            35899999999999999999999999999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.89  E-value=0.026  Score=50.48  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|+..|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  999999875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.89  E-value=0.031  Score=50.30  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|..|.++|..|+..|+ +|.++|.+..
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            5689999999999999999999998 9999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.85  E-value=0.093  Score=46.70  Aligned_cols=33  Identities=6%  Similarity=0.142  Sum_probs=26.1

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+++|||||. +++.+|..+++.|.+|+++++.+
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            4678888875 56788888888899999987654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.84  E-value=0.028  Score=49.79  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.82  E-value=0.025  Score=50.60  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||.|..|...|..|++.|++|+++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998763

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.82  E-value=0.03  Score=52.82  Aligned_cols=35  Identities=17%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999999875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.81  E-value=0.028  Score=50.41  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.+.|..|+ .|.+|++++|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            68999999999999999999 999999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.80  E-value=0.023  Score=48.19  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++.++|+|.|| |..|..++..|.++|++|.++.|++.
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            666678999996 99999999999999999999999864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.79  E-value=0.028  Score=50.55  Aligned_cols=37  Identities=24%  Similarity=0.546  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      |+++.+|+|||+|-.|.++|+.|+..+.  ++.++|.+.
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            6667899999999999999999999886  799999754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.78  E-value=0.033  Score=48.04  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||+|-.|.++|..|++.|++|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46899999999999999999999999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.72  E-value=0.032  Score=50.16  Aligned_cols=35  Identities=17%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ++++|+|||+|-.|.++|..|+..|.  ++.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            45799999999999999999999885  799999764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.67  E-value=0.04  Score=49.54  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|||+|..|.++|..|+..|+ ++.++|.++.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            4689999999999999999999988 9999998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.64  E-value=0.031  Score=52.76  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.63  E-value=0.026  Score=53.34  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            799999999999999999999999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.63  E-value=0.033  Score=48.22  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999998 899999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.62  E-value=0.028  Score=50.63  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|.+.|..|++.|++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999999999999999 654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.61  E-value=0.036  Score=49.69  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      +|+|||+|-.|.++|..|++.  |.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999985  789999998763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.61  E-value=0.025  Score=50.79  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc-----C-CceEEEeC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL-----G-IRSLVLES   35 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~-----g-~~V~v~E~   35 (409)
                      ++|.|||+|..|.+.|..|++.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999987

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.58  E-value=0.035  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +++|.|||+|--|.+.|..|++.|++|++++|++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4799999999999999999999999999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.58  E-value=0.017  Score=53.27  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999865

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.57  E-value=0.04  Score=49.35  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ++|+|||+|-.|..+|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            589999999999999999999997 999999865

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.56  E-value=0.039  Score=48.04  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG----IRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g----~~V~v~E~~~~   38 (409)
                      .++|.|||+|-.|.+.|..|++.|    ++|.++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999999999999999999999    69999998765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.53  E-value=0.014  Score=45.79  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|..|..+|..|++.|.+|++++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            35899999999999999999999999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.51  E-value=0.038  Score=51.48  Aligned_cols=35  Identities=26%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45899999999999999999999999999998763

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.50  E-value=0.036  Score=52.71  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.50  E-value=0.031  Score=49.50  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||.|..|...|..|++.|++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.39  E-value=0.027  Score=50.71  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .++|.|||.|..|..+|..|++.| ++|+++++++.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            358999999999999999999999 99999998763

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.38  E-value=0.032  Score=50.32  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|..|...|..|++.|++|+++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.37  E-value=0.044  Score=50.14  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .+.+|+|+|||-||..+|..|...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35699999999999999999999999 999999874

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.37  E-value=0.049  Score=45.95  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|...|..|++.|++|.+++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.36  E-value=0.046  Score=50.68  Aligned_cols=35  Identities=23%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|+|.+|+.+|..++..|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45899999999999999999999999999998763

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.31  E-value=0.057  Score=44.74  Aligned_cols=37  Identities=38%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+. +.|+|+|| |-.|..++..|.++|++|.++.|++.
T Consensus         1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            543 68999999 99999999999999999999998764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.30  E-value=0.038  Score=50.03  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|.|||+|..|.+.|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.26  E-value=0.049  Score=49.97  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.20  E-value=0.014  Score=49.58  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      .++|.|||.|..|.++|..|+++|++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            46899999999999999999999999999987

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.14  E-value=0.045  Score=49.15  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .++|.|||.|..|...|..|++.|+ +|+++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4689999999999999999999999 999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.11  E-value=0.057  Score=49.55  Aligned_cols=34  Identities=15%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|+|||..|..+|+.+++.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3799999999999999999999999999998765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.10  E-value=0.05  Score=49.36  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|.|||.|..|.+.|..|++.|++|.++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.07  E-value=0.05  Score=48.86  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|.|||.|..|.+.|..|++.|+  +|.++|+++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            589999999999999999999999  9999998763

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.06  E-value=0.049  Score=48.28  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      +|+|||+|..|.++|..|++.|+  +|.++|+++.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            79999999999999999999998  8999998763

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.06  E-value=0.066  Score=47.20  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI---RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~---~V~v~E~~~~   38 (409)
                      +++|.|||+|--|.+.|..|.++|+   +|.++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4689999999999999999999998   9999998764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.99  E-value=0.021  Score=48.94  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            4579999999999999999999999 999998764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.98  E-value=0.051  Score=48.95  Aligned_cols=32  Identities=31%  Similarity=0.491  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|..|++.|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            79999999999999999999999  999999865

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.95  E-value=0.06  Score=49.18  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ++.+|+|+|||-+|..+|..|...|. +|+++|++.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            35799999999999999999999998 799999873

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.91  E-value=0.063  Score=49.41  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|..|..+|..|+..|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3589999999999999999999999999999765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.91  E-value=0.074  Score=46.85  Aligned_cols=37  Identities=30%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+ .++|+|.|+|..|..++..|.++|++|+++.|+..
T Consensus         1 M~-~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            1 MS-LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             -C-CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            54 45899999999999999999999999999998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.88  E-value=0.05  Score=48.42  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|..|...|..|++.|++|.++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998753

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.87  E-value=0.041  Score=51.30  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|+.+|..|++ |++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~   33 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            69999999999999999999 999999998753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.84  E-value=0.053  Score=51.80  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||+|.-|..+|..|+++|++|.+++|++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            56899999999999999999999999999998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.84  E-value=0.062  Score=47.24  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|.|||+|..|.+.|..|.+.|++|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.83  E-value=0.07  Score=47.15  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+ |-.|...|..|++.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999 9999999999999999999999765

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.83  E-value=0.061  Score=45.10  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVG-AGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+||| +|-.|...|..|++.|++|.+++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 99999999999999999999999865

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.82  E-value=0.062  Score=48.10  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|+|||+|..|.++|+.|++.|+  ++.++|..+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            379999999999999999999987  8999998763

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.80  E-value=0.038  Score=50.59  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-------CceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-------IRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-------~~V~v~E~~~~   38 (409)
                      .++|.|||+|..|.+.|..|++.|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       89999998765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.75  E-value=0.062  Score=46.90  Aligned_cols=34  Identities=38%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      .++|.|||+|-.|...|..|++.|++ |.++++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            36899999999999999999999998 89999765

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=93.74  E-value=0.043  Score=49.62  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCC-------ceEEEeCCC
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGI-------RSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~-------~V~v~E~~~   37 (409)
                      |+++++|+|+|| |..|..++..|.+.|+       +|.++|+.+
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            777789999998 9999999999999886       899999753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.72  E-value=0.064  Score=47.78  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVG-AGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.||| +|..|.++|..|++.|++|.++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3799999 999999999999999999999997653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.71  E-value=0.074  Score=49.64  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |++..+|+|+|||..|..++..+.+.|++|.+++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            5556799999999999999999999999999999 54

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.66  E-value=0.072  Score=45.96  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI----RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~----~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|.+.|..|.++|+    +|.++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            589999999999999999999998    9999998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.64  E-value=0.066  Score=46.60  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      +|.|||+|-.|...|..|++.| ++|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999999765

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.63  E-value=0.077  Score=47.67  Aligned_cols=34  Identities=29%  Similarity=0.617  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|+.|+..|.  +|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4689999999999999999998885  799999865

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.62  E-value=0.075  Score=50.61  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+++|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.59  E-value=0.075  Score=50.70  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||+|..|...|..|+++|++|.++++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.56  E-value=0.079  Score=47.64  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|+.|+..|.  ++.++|.+.
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            4689999999999999999999987  899999754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.56  E-value=0.046  Score=48.64  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.+||-|.-|...|..|.++|++|+++|+++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3799999999999999999999999999998775

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.55  E-value=0.08  Score=48.87  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||+|..|+.+|..++..|.+|+++|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4589999999999999999999999999999765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.49  E-value=0.061  Score=51.42  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~   38 (409)
                      ++|.|||.|..|+.+|..|+++  |++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5899999999999999999998  799999998764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.48  E-value=0.068  Score=47.43  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|++.|++|.++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999999999999999999999999998764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.43  E-value=0.063  Score=49.54  Aligned_cols=34  Identities=18%  Similarity=0.046  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-------CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG-------IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g-------~~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|.+.|..|++.|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.40  E-value=0.072  Score=47.70  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~   37 (409)
                      ++|+|||+|-.|.++|..|++.|  .+|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            37999999999999999999999  6899999865

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.39  E-value=0.075  Score=46.90  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4689999999999999999999997 799999765

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.36  E-value=0.075  Score=46.74  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|.|||..|..++..|.++|++|+++.|++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            5899999999999999999999999999998763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.36  E-value=0.092  Score=47.20  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|..|.++|+.|+..|+  +|.++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3689999999999999999999997  899999754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.34  E-value=0.093  Score=45.98  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.++|..|++.|.+|+|++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.29  E-value=0.1  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            6999996 99999999999999999999998763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.28  E-value=0.086  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|..|..+|..|+++|++|.++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.26  E-value=0.087  Score=49.81  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|..|..+|..|+..|.+|+++|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4579999999999999999999999999999765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.26  E-value=0.084  Score=50.55  Aligned_cols=36  Identities=31%  Similarity=0.600  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            358999999999999999999999999999998754

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.23  E-value=0.095  Score=50.21  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.23  E-value=0.11  Score=45.36  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|-+|.++|..|++.|.+|+|+.|...
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.21  E-value=0.093  Score=46.18  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|.|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            79999999999999999999998  899998765

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.19  E-value=0.083  Score=50.10  Aligned_cols=34  Identities=29%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||||.+|...+..|.+.|.+|+|++...
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            4689999999999999999999999999999753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.17  E-value=0.091  Score=46.81  Aligned_cols=34  Identities=38%  Similarity=0.653  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|+|||||-.|..+|+.|+.+|+  +|.|+|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            589999999999999999999998  9999998764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.17  E-value=0.12  Score=46.79  Aligned_cols=38  Identities=21%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++.+.|+|.|| |-.|..++..|.++|++|+++++...
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            666678999996 99999999999999999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.15  E-value=0.09  Score=49.92  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||||.+|+-+|..+.+.|. +|+++++.+.
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            479999999999999999999998 5999998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.96  E-value=0.12  Score=46.92  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            579999999999999999999999999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=92.89  E-value=0.11  Score=48.22  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4589999999999999999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=92.89  E-value=0.12  Score=45.78  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|.|| |..|..++..|.++|++|+++-|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            37999999 99999999999999999999988764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.88  E-value=0.12  Score=44.02  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+.|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            468999998 99999999999999999999998764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.85  E-value=0.12  Score=46.60  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4689999999999999999999998 789999765

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.84  E-value=0.12  Score=43.44  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|.|| |-.|..++..|.++|++|.++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999998 9999999999999999999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.83  E-value=0.11  Score=49.57  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||+|..|..+|..|+..|.+|+++|+++.
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45899999999999999999999999999998753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.82  E-value=0.11  Score=46.20  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|.+|.++|..|++.|. +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998775

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.80  E-value=0.086  Score=46.53  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||+|..|...|..|++ |++|+++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            79999999999999999999 999999998753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.78  E-value=0.1  Score=49.75  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|..|..+|..|+++|++|+++++++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999865

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.76  E-value=0.13  Score=46.00  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|.|| |..|..++..|.++|++|+++.|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999999 99999999999999999999998765

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=92.75  E-value=0.15  Score=47.11  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||+|..|..++..+++.|++|.++|..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            45899999999999999999999999999997654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.74  E-value=0.091  Score=45.61  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|.|||+|-.|...|..|.+.|.+|.++++++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            3589999999999999999999999999999765

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.73  E-value=0.14  Score=46.17  Aligned_cols=34  Identities=18%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|.++|+.|+.+|.  ++.++|.+.
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            4689999999999999999999987  899999764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.72  E-value=0.12  Score=45.99  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++...|+|+|| |-.|..++..|.+.|++|.++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            654568999998 99999999999999999999998753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.70  E-value=0.13  Score=45.73  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+|..|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4589999999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.70  E-value=0.13  Score=45.55  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|.|||+|..|..+|..|+..|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4589999999999999999999999999999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.63  E-value=0.064  Score=50.08  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=28.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-cCCceEEEeC
Q 015331            5 EDIVIVGAGIAGLTTSLALHR-LGIRSLVLES   35 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~   35 (409)
                      ++|+|||+|..|.++|..|++ .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            489999999999999999998 5999999983

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.61  E-value=0.07  Score=47.32  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|...|..|++.|++|++++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            589999999999999999999999999998 543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.61  E-value=0.15  Score=47.17  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||+|..|..+|..+++.|++|.++|..+.
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            35899999999999999999999999999997653

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.61  E-value=0.14  Score=46.32  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            3 EDEDIVIVGA-GIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGg-G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ...+|+|||+ |-.|.++|+.|...|.  +|.++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3568999998 9999999999999985  899999754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.58  E-value=0.11  Score=44.82  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4689999999999999999999998 789999765

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.54  E-value=0.088  Score=53.00  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998864

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.53  E-value=0.13  Score=45.90  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++...|+|+|| |-.|..++..|.++|++|.++.|++.
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   39 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   39 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            655568999997 99999999999999999999998753

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.53  E-value=0.12  Score=45.33  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|-+|.+.|..|.+.|.+|++++|+.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.52  E-value=0.11  Score=45.58  Aligned_cols=35  Identities=29%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|+|+|-+|.++|..|++.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            3579999999999999999999998 8999998864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.52  E-value=0.08  Score=47.88  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.2

Q ss_pred             CCC-CCcEEEECC-CHHHHHHHHHHHHcCC-------ceEEEeCC
Q 015331            1 MEE-DEDIVIVGA-GIAGLTTSLALHRLGI-------RSLVLESS   36 (409)
Q Consensus         1 M~~-~~dVvIIGg-G~aGl~~A~~L~~~g~-------~V~v~E~~   36 (409)
                      |++ +++|+|+|| |-.|.+++..|...|+       +|.++|..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            543 579999998 9999999999999885       79999976

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.48  E-value=0.14  Score=46.12  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ++.+|+|||+|-.|.++|+.|+..+.  ++.++|.+.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            45799999999999999999998886  799999754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.41  E-value=0.11  Score=45.58  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999875

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.33  E-value=0.15  Score=45.08  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      |+++..|+|.|| |-.|..++..|.+.| ++|.++.|++.
T Consensus         2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~   41 (299)
T 2wm3_A            2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR   41 (299)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC
Confidence            554568999999 999999999999998 99999998764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=92.23  E-value=0.12  Score=45.00  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      +|.|||+|-.|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999866

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=92.21  E-value=0.14  Score=45.33  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~   37 (409)
                      .++|.|||+|-.|.+.|..|++.  |.+|.++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            35899999999999999999988  67899998764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.21  E-value=0.098  Score=49.00  Aligned_cols=34  Identities=26%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+.-|||.|..|+.+|..|+++|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4788999999999999999999999999999874

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.19  E-value=0.15  Score=46.56  Aligned_cols=34  Identities=26%  Similarity=0.522  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            4689999999999999999999998 799999765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.03  E-value=0.2  Score=43.32  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +|+|||+|-+|-+++..|.+.|. +|+|++|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            79999999999999999999998 8999998753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.03  E-value=0.15  Score=49.79  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..|+|||+|..|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            57999999999999999999999999999998764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=91.96  E-value=0.16  Score=45.28  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +|+|||+|-.|.++|+.|+..|+ ++.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999888 699999875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.87  E-value=0.11  Score=52.35  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998864

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=91.77  E-value=0.2  Score=46.15  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ....++|+|||..|.++|..++..|++|+|+|.++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            3568999999999999999999999999999987653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.73  E-value=0.21  Score=44.66  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3579999999999999999999998 899999873

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.70  E-value=0.21  Score=43.98  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.+++..|++.|. +|+|+.|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4589999999999999999999998 699998875

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=91.68  E-value=0.19  Score=46.76  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            4689999999999999999999999999999865

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.53  E-value=0.15  Score=45.62  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcC--CceEEEeCCC
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLG--IRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g--~~V~v~E~~~   37 (409)
                      +|+|||| |-.|.++|..|++.|  .++.++|.+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999999988  5899999875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.45  E-value=0.19  Score=44.38  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ++|.|||+|-.|.++|+.|..++.  ++.|+|...
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            379999999999999999998875  799999764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.39  E-value=0.24  Score=44.81  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|.|||.|-.|..+|..|+..|.+|++++++..
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            5799999999999999999999999999998764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.37  E-value=0.25  Score=43.22  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4579999999999999999999996 899998765

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.34  E-value=0.26  Score=46.18  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|+|||..|..++..+++.|++|.++|.++.
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            45899999999999999999999999999997653

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=90.64  E-value=0.037  Score=46.11  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|||+|-.|.+.|..|.+.|++|.+++|++.
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            35799999999999999999999999999988754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.29  E-value=0.22  Score=43.30  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|||+|-.|.+.|..|.+.|.+|++++|+.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999765

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=91.28  E-value=0.21  Score=46.52  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|||+|..|.++|..|+..|. +|+++++..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.17  E-value=0.22  Score=43.73  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+++|+|+|-+|-+++..|++.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4589999999999999999999998 899998775

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=91.15  E-value=0.24  Score=43.55  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4579999999999999999999996 899998865

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=91.14  E-value=0.15  Score=45.90  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=30.6

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331            4 DEDIVIVG-AGIAGLTTSLALHRLG--IRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIG-gG~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      +++|+||| +|..|.+++..|+..|  .+|.++|.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~   45 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA   45 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            46899999 7999999999999988  68999997653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=91.10  E-value=0.25  Score=45.10  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999999999999999999999999999854

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=91.06  E-value=0.24  Score=46.18  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       247 GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999999999999999999999999865

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.89  E-value=0.21  Score=44.58  Aligned_cols=34  Identities=12%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAG-IAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG-~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|||+| .+|..+|..|.+.|.+|++.+|+.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            3589999999 679999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-22
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-20
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.002
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-19
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	3e-18
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-10
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-07
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	5e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	8e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	9e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-06
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-06
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-06
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	7e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-05
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	5e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	5e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-05
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	1e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-04
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	1e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	4e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	7e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.001
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.001
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.002
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.002
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.002
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.003
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.004
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 95.6 bits (236), Expect = 2e-22
 Identities = 57/369 (15%), Positives = 99/369 (26%), Gaps = 68/369 (18%)

Query: 6   DIVIVGAGIAGLTTSLAL-----HRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVG 60
           D++IVGAG AGL  +  L      +  ++  +++   +    G A  L      +L  +G
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 61  ISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS 120
           ++D +  +   +  + + +                  G      V   L    +ER +  
Sbjct: 69  LADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQV--VLHQGRIERRILD 126

Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSD 180
                S   + VE                +       D     V   L +     +    
Sbjct: 127 SIAEISDTRIKVERP--------LIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQ 178

Query: 181 IRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
               T                                            +  EG      
Sbjct: 179 FGHKT-------------------------ENGLFRSNLQTQEEEDANYRLPEGKEAGEI 213

Query: 241 QFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300
           + V  K     +   + V  T    ++V+    +              V +AGDA H  +
Sbjct: 214 ETVHCKYVIGCDGGHSWVRRTLGFEMIVTEKFSK-----------DERVFIAGDACHTHS 262

Query: 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRW 360
           P  GQG   ++ D   L   +          V   +A  D          LK Y  ER+ 
Sbjct: 263 PKAGQGMNTSMMDTYNLGWKLGL--------VLTGRAKRD---------ILKTYEEERQP 305

Query: 361 RSCELISMA 369
            +  LI   
Sbjct: 306 FAQALIDFD 314

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 88.6 bits (218), Expect = 2e-20
 Identities = 54/211 (25%), Positives = 76/211 (36%), Gaps = 7/211 (3%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRS-LVLESSESLRVTGFAITLWTNAWRALDAVGISDS 64
           DI+I GAGI GL+ +LALH+ GI    +LESS  +R  G  I +   A  AL  +G+  +
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 65  LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEV--RSVKRSLLMEALERELPSGT 122
           L    I    +           SE      GN        R   + +L+ A+   L    
Sbjct: 63  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 122

Query: 123 IRYSSKVVSVEESGLFKLVNLADGA----VFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR 178
           +R    V  +EE     L+   DG          VL+G DG++S V   L   +      
Sbjct: 123 VRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRDP 182

Query: 179 SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGF 209
               G     L              G     
Sbjct: 183 LPHWGRGRITLLGDAAHLMYPMGANGASQAI 213

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 273 YRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGV 332
            + P      +  +G + + GDA H M P    G   A+ DGI LA  +A  +       
Sbjct: 175 DQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNAD------ 228

Query: 333 TKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369
                             L+ Y   RR  + ++I   
Sbjct: 229 --------------VAAALREYEEARRPTANKIILAN 251

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 85.0 bits (209), Expect = 3e-19
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG--FAITLWTNAWRALDAVGISD 63
            + I+GAG +GL     LH+ GI +++LE      V G   A  L       L   G+  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
            + +  +  +G+ +A +   +               +    V R  LMEA E    +   
Sbjct: 64  RMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTR-DLMEAREACGATTVY 122

Query: 124 RYSSKVVSVEESGLFKLVNLADGA--VFKTKVLIGCDGVNSVVAKWL 168
           + +   +   +     +    DG         + GCDG + +  + +
Sbjct: 123 QAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSI 169

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 81.7 bits (200), Expect = 3e-18
 Identities = 49/315 (15%), Positives = 78/315 (24%), Gaps = 57/315 (18%)

Query: 5   EDIVIVGAGIAGLTTSLALHRLGIRSLVLE-SSESLRVTGFAITLWTNAWRALDAVGISD 63
           + I +VG  I+GLT +L L   G+   V E S + L   G  I +       L   G+  
Sbjct: 5   DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64

Query: 64  SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
                       V A           + +  G+       +   S+     E        
Sbjct: 65  DSISVPSSSMEYVDAL----------TGERVGSVPADWRFTSYDSIYGGLYEL-FGPERY 113

Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRG 183
             S  +V + +      +  +DG   +   +IG DG  SVV K                 
Sbjct: 114 HTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKR---------------- 157

Query: 184 CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFV 243
                                          +TV    +                     
Sbjct: 158 ---------------------------LLGIETVDRMVHGRVLLIGDAAVTPRPHAAAGG 190

Query: 244 LSKCHDLPEQVKAIVENTPLDSILVSPLRYRYP--WEVLWGNISKGNVCVAGDAFHPMTP 301
                D     +   +N  L   L S    +       L       +    G +F P  P
Sbjct: 191 AKASDDARTLAEVFTKNHDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQHGGSFEPGNP 250

Query: 302 DIGQGGCAALEDGII 316
               G     E  ++
Sbjct: 251 AFAFGLPKVDEPSVV 265

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 59.2 bits (141), Expect = 2e-10
 Identities = 44/347 (12%), Positives = 93/347 (26%), Gaps = 27/347 (7%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRS-LVLESSE-------SLRVTGFAITLWTNAWRALD 57
            +++VGAG++G++ +  L   GI   L+LE+++            G  + L  N    ++
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 58  AVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERE 117
              ++      +  L+     S       +            +  + ++ +  +E +  +
Sbjct: 62  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121

Query: 118 LPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAG 177
           L +         +S+              A     V+                       
Sbjct: 122 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVP 181

Query: 178 RSDIRGCTDFKLRH-----------GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPS 226
            +      D                 L  ++ +   K  +          V     + P 
Sbjct: 182 LATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPG 241

Query: 227 NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNI-- 284
               + E N   +  +V+        Q   I     L +  V  +   +P  V       
Sbjct: 242 GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301

Query: 285 ---SKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEK 328
                G V   G+           G   A   GI  A  +   + +K
Sbjct: 302 LRAPVGRVYFTGEHTSEHYNGYVHG---AYLSGIDSAEILINCAQKK 345

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 8/170 (4%)

Query: 1   MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL----RVTGFAITLWTNAWRAL 56
           M +  + +I+GAG AGL  +  L +LG    V ++ + +     ++G     +TN     
Sbjct: 1   MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLE-VT 59

Query: 57  DAVGISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER 116
            A  +S +       L        +S      I++  K           ++ + M   E 
Sbjct: 60  PAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSEC 119

Query: 117 ELPSGTIRYSSKVVSVE---ESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163
           +     I   S+V  VE        + V   +   ++ K LI   G  S+
Sbjct: 120 DKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSM 169

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 7/167 (4%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
           D++++G G +GL  ++     G   L+L+    L                   +      
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS----- 120
              + +      +   +    +         +     R    S   +++   L +     
Sbjct: 64  IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123

Query: 121 -GTIRYSSKVVSVE-ESGLFKLVNLADGAVFKTKVLIGCDGVNSVVA 165
              IR ++ V ++E E+G  K V L  G V +T  ++   G  SV  
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQ 170

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          M+E+ D++++G G+     S  +   G + L ++ +   
Sbjct: 3  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITL 48
          ++ D D++++G GI     S  L   G + L ++  +     G A ++
Sbjct: 2  IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD--HYGGEAASV 47

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDA 58
          D+V+VG GI+G+  +  LH  G+  +VLE+ +  RV G   TL     + +D 
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYTLRNQKVKYVDL 51

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW 53
          M   + +V++G+G+ GL+++L L R G    +L       V+           
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGA 55

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWR 54
          ++ +VG GI+GL  +  L   G  +++LESS   R+ G   T     + 
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA--RLGGAVGTHALAGYL 48

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
          M+   + V++G GI G   +  L +    + + ES  
Sbjct: 1  MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
          D +++G G+AGL  ++A  + G+ ++VL      R    A      A      +   D+ 
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNE 66

Query: 66 RQQ 68
             
Sbjct: 67 DLH 69

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE-----SSESLRVTGFAITLWTNAWRAL 56
          +E  D+VI+G+G AGL  +++    G + ++LE        +    G      T     L
Sbjct: 21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKL 80

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 3  EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNA--WRALDAVG 60
          E   +++VGAG AG   SLA  + G   ++++ +              NA   +   A G
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHG 77

Query: 61 ISDSLRQQHIQLQGM 75
          + D +          
Sbjct: 78 VEDKVEWFIEDAMKG 92

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITL 48
           ++I+G+G++GL  +  L   G+   +LE+ +  RV G   T 
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATF 47

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW 53
           +VIVGAG+AGL+ +  L   G +  VLE+SE  R  G   T      
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RPGGRVRTYRNEEA 77

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40
           +  D+V+VG+G AG + +++    G + +++E    + 
Sbjct: 14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG 43
          D+++VGAG  G+     L + G+++L++++ +     G
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWR 54
          D +IVG+G+ G   +  L +L  + LV+E      + G A T      +
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN--HIGGNAYTEDCEGIQ 49

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 3  EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          E+ D+++VGAG +GL     L  LG    V+E++  +
Sbjct: 6  EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW 53
          I+IVGAG +G      L   G +  +++  +   + G +     +  
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD--HIGGNSYDARDSET 49

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWR 54
          + ++GAG++GL  +  L   G+   V E+    +  G   ++  +   
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--KAGGKLRSVSQDGLI 49

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRS-LVLESSE 37
           IVI+GAGI G   +  L   G  +  VL+   
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40
          D V++GAG AG+  +L + + G    +L      R
Sbjct: 9  DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR 43

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          + +  D+VI+G G AG   ++   +LG  +  +E    L
Sbjct: 2  INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36
           ++IVGAG +G  T+  L + G+R  +L  S
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRL------GIRSLVLESSESLR 40
            E+ D+VIVGAG AGL+ +  L +L       +R  ++E +  + 
Sbjct: 29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLES 35
          +V++GAG+ GL+T+L +H      L    
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 33/78 (42%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
          D++IVG+G AG   ++   R GIR+ ++      ++          +    +   ++ +L
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 66 RQQHIQLQGMVVASSVSC 83
          +    +    V+ S  + 
Sbjct: 63 KVHVDEYDVDVIDSQSAS 80

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          + + D+V++G G  G + + A    G++  ++E  ++L
Sbjct: 4  DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 3  EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          ++ D+VI+G G  G   ++   +LG ++  +E   +L
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 4  DEDIVIVGAGIAGLTTSLAL-HRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGI 61
          + D+V+VGAG AGL+ +  +     ++  ++E S S          L++       A   
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 92

Query: 62 SDSL 65
           D +
Sbjct: 93 LDEI 96

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 1  MEEDE-DIVIVGAGIAGLTTSLALHRLGIRSLVL 33
          M+  + D+ IVGAG AGL  ++A  +    + + 
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIA 34

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 2  EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40
          E   D++I+G+G AGL+ +L L     + +VL       
Sbjct: 5  EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE 42

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 1  MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
          M+   D+VIVG+G  G T +  L   G +  + +
Sbjct: 1  MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 1  ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWT 50
          +E  +  + IVG+G A  T ++   R  ++ L+ E   +  +        T
Sbjct: 1  LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT 51

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 6  DIVIVGAGIAGLTTSLAL----HRLGIRSLVLESSESLRVTGFA--ITLWTNAWRALDAV 59
          DI+I+G G +G   +          G++  ++E +   R    A  ++            
Sbjct: 23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRS 82

Query: 60 GISDSLRQ 67
             ++L  
Sbjct: 83 ERQNTLED 90

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 4  DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALD 57
          ++++VIVG G+AG+  +  L   G    +    ++  +      L         
Sbjct: 3  NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKA 56

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 7  IVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLR 66
          +V++GAG+A ++    L + G + L+    +          L  +     DA  I    +
Sbjct: 6  VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 65

Query: 67 QQH 69
          +  
Sbjct: 66 RAP 68

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 4  DEDIVIVGAGIAGLTTS--LALHRLGIRSLVLESSESLR 40
            D++IVGAG +GL+ +  +A +R  ++  ++ESS +  
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG 88

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 6   DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSL 65
             V++G G     ++L L   G+++L+LE  +     G    ++              + 
Sbjct: 4   PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNR 63

Query: 66  RQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR 103
            +  +     +   + +  P + +              
Sbjct: 64  TEAPLGSFLWLDVVNRNIDPYAGV-LDRVNYDQMSVYV 100

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 3  EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT 42
           + D + +G G AG   S  L  +G R L+++    L  +
Sbjct: 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37
          + ++VGAG  G   ++   +LG +  ++E   
Sbjct: 5  ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 7/31 (22%), Positives = 18/31 (58%)

Query: 4  DEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34
             ++I+G+G AG T ++   R  ++ +++ 
Sbjct: 5  HSKLLILGSGPAGYTAAVYAARANLQPVLIT 35

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36
          D +++G G  GL ++     LG R+ V+ES 
Sbjct: 5  DYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 8/34 (23%), Positives = 21/34 (61%)

Query: 6  DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39
          D++++GAG  G   ++   +LG+++ ++E  +  
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	100.0
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.94
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.85
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.6
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.57
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.52
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.43
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.3
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.29
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.26
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.23
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.21
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.15
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.15
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.14
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.14
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.12
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.08
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.07
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.06
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.05
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.05
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.05
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.03
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.03
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.0
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.98
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.95
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.94
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.91
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.88
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.85
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.85
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.83
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.82
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.82
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.8
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.8
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.79
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.76
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.76
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.72
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.7
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.69
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.68
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.67
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.61
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.57
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.56
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.55
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.52
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.5
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.48
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.46
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.45
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.41
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.39
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.39
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.37
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.33
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.32
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.32
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.21
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.14
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.07
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.05
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.03
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.93
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.86
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.85
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.84
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.84
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.71
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.63
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.56
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.56
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.45
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.32
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.29
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.28
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.07
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.96
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.96
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.94
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.94
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.85
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.39
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.26
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.11
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.87
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.84
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.81
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.78
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.75
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.66
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.65
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.65
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.62
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.61
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.59
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.59
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.47
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.4
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.37
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.37
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.37
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.35
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.33
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.26
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.21
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.2
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.09
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.06
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.05
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.04
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.95
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.75
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.54
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.5
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.35
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.35
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.18
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.16
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.08
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.05
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.96
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.73
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.53
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.5
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.48
d3c96a2	111	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.23
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.22
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.08
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.0
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.43
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.4
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.35
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.25
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.82
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.59
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.29
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.19
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.1
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.78
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.7
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.68
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.1
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.94
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.76
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.66
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.65
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.49
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.1
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.1
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.93
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.76
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.7
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.15
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.08
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.33
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.31
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.25
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.23
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.97
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.84
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.48
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.84
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.84
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	84.83
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	84.8
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.63
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.51
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.43
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.75
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	83.73
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	83.61
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	83.54
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.18
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	83.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.21
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.13
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.98
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.89
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	81.78
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.74
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	81.7
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	81.41
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.25
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	81.24
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.22
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.01
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.52
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.42
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.3
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.26
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.07

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=4.1e-32  Score=244.03  Aligned_cols=265  Identities=26%  Similarity=0.339  Sum_probs=191.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++||+|||||||||++|+.|+++|+ +|+|+||.+.+...++++.++++++++|+++|+++.+.+..........+.. +
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~   79 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-S   79 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT-T
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcC-C
Confidence            4799999999999999999999997 8999999999988899999999999999999999999887776666555544 3


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHH----HhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEE
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEAL----ERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVL  154 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l----~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~v  154 (409)
                      +.............. ........+......+    .+...+..+.++++++.+...++.+.|.+.++    +++.+|+|
T Consensus        80 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          80 GATVWSEPRGVEAGN-AYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             SCEEEEEECGGGGTC-SSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCEEEeccccccccc-cCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence            333222222222111 1122233333333332    23334679999999999999999999998876    37899999


Q ss_pred             EEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331          155 IGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG  234 (409)
Q Consensus       155 V~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      |+|||.+|.+|+............                                                        
T Consensus       159 i~ADG~~S~vr~~~~~~~~~~~~~--------------------------------------------------------  182 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPDQRPLRDP--------------------------------------------------------  182 (288)
T ss_dssp             EECCCTTCHHHHHHCTTCCCCCCC--------------------------------------------------------
T ss_pred             eccCCccceeeeeecccccccccc--------------------------------------------------------
Confidence            999999999987753321111000                                                        


Q ss_pred             ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331          235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG  314 (409)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da  314 (409)
                                                                    ...+..++++++|||+|.++|+.|||+|++++|+
T Consensus       183 ----------------------------------------------~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~  216 (288)
T d3c96a1         183 ----------------------------------------------LPHWGRGRITLLGDAAHLMYPMGANGASQAILDG  216 (288)
T ss_dssp             ----------------------------------------------CSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHH
T ss_pred             ----------------------------------------------ccccccCcceecccccceeCCccccchhhhhhhH
Confidence                                                          0023467899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHH
Q 015331          315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVL  390 (409)
Q Consensus       315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~  390 (409)
                      ..|++.|.+   .                 .+..++|..|++.|++++..++..++....    ........++..|..+
T Consensus       217 ~~l~~~l~~---~-----------------~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (288)
T d3c96a1         217 IELAAALAR---N-----------------ADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAI  276 (288)
T ss_dssp             HHHHHHHHH---C-----------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHhh---C-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Confidence            999999986   2                 267889999999999999999999876654    3333344556665544


Q ss_pred             hh
Q 015331          391 LG  392 (409)
Q Consensus       391 ~~  392 (409)
                      .+
T Consensus       277 ~~  278 (288)
T d3c96a1         277 TG  278 (288)
T ss_dssp             --
T ss_pred             hH
Confidence            43

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=3e-33  Score=259.93  Aligned_cols=298  Identities=15%  Similarity=0.123  Sum_probs=180.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-----HcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALH-----RLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVV   77 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~-----~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (409)
                      ..|||+||||||+||++|..|+     ++|++|+||||.+.+...++++.++++++++|+++|+++++.+.+.+.....+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~   85 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   85 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEE
Confidence            3589999999999999999997     47999999999999999999999999999999999999999998888887777


Q ss_pred             EeccCCccccccccccc--CCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331           78 ASSVSCQPASEISFKTK--GNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK  152 (409)
Q Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad  152 (409)
                      .................  ..........+.+..+.+.|.+...   .......+.+.               +..+.+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~d  150 (360)
T d1pn0a1          86 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLI---------------PEKMEID  150 (360)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEE---------------EEEEEEC
T ss_pred             EecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEecc---------------cceEEee
Confidence            65544333222221111  1112233446788888887776542   12222222221               1246799


Q ss_pred             EEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCC--eEEEE---EEEcCCC
Q 015331          153 VLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQ--TVYWF---FNWCPSN  227 (409)
Q Consensus       153 ~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~---~~~~~~~  227 (409)
                      .+++|||.+|.++...............    .......................+.+|....  .....   .....+.
T Consensus       151 ~~~~~dg~~s~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (360)
T d1pn0a1         151 SSKAEDPEAYPVTMTLRYMSEDESTPLQ----FGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDG  226 (360)
T ss_dssp             GGGTTCTTCCCEEEEEEECCGGGSCCCT----TCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCC
T ss_pred             EEEEeecCCcceEEEEEEeeccccccee----eeeecCCCceEEeeecCCcccceeecCcccchhhHHHHHHHhhcCccc
Confidence            9999999999887543221110000000    0000000000000000000000111111111  00000   0000000


Q ss_pred             CCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhcccc-CCCcEEEeccCCCCCCCCCcch
Q 015331          228 QDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNI-SKGNVCVAGDAFHPMTPDIGQG  306 (409)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~lvGDAA~~~~P~~G~G  306 (409)
                               ........             .           +..     .....+| ..+|++|+|||||.++|+.|||
T Consensus       227 ---------~~~~~~~~-------------~-----------~~~-----~~~~~~~~~~grv~LvGDAAH~~~P~~GqG  268 (360)
T d1pn0a1         227 ---------GHSWVRRT-------------L-----------GFE-----MIVTEKFSKDERVFIAGDACHTHSPKAGQG  268 (360)
T ss_dssp             ---------TTCHHHHH-------------H-----------TCC-----CEECSCSEETTTEEECGGGTEECCSTTCCH
T ss_pred             ---------ccchhhcc-------------c-----------ccc-----cchhhheeecCcEEEccCcccccccccCCC
Confidence                     00000000             0           000     0011123 3689999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331          307 GCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY  374 (409)
Q Consensus       307 ~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~  374 (409)
                      +|+|++||..|++.|.....+.                 ..+++|++|+++|++++..++..++.++.
T Consensus       269 ~n~al~Da~~La~~l~~~~~~~-----------------~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~  319 (360)
T d1pn0a1         269 MNTSMMDTYNLGWKLGLVLTGR-----------------AKRDILKTYEEERQPFAQALIDFDHQFSR  319 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC-----------------BCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhcCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887653                 45678999999999999999999876654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.9e-27  Score=211.49  Aligned_cols=259  Identities=21%  Similarity=0.271  Sum_probs=187.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV   81 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~   81 (409)
                      ++||+||||||+||++|+.|+++|++|+||||++.+.  ...++..++++++++|+++|+++.+.+.+.+..++.+....
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   81 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence            5799999999999999999999999999999987543  34567889999999999999999999988888887776543


Q ss_pred             CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEE-EEEEeCCeEEEEEc-CCC--EEecCEEE
Q 015331           82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVV-SVEESGLFKLVNLA-DGA--VFKTKVLI  155 (409)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~-~v~~~~~~~~v~~~-~g~--~~~ad~vV  155 (409)
                      ...   ........  .....+.+.+..+.+.|.+.+.  +..+.+++.++ .+..+++.+.|++. +|+  +++||+||
T Consensus        82 ~~~---~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vV  156 (292)
T d1k0ia1          82 QRR---RIDLKRLS--GGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (292)
T ss_dssp             EEE---EECHHHHH--TSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             ccc---cccccccc--ccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEE
Confidence            211   11111111  1234457889999999887653  45566655544 45555667777664 443  57899999


Q ss_pred             EcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331          156 GCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN  235 (409)
Q Consensus       156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      +|||.+|.+|+.++                                                                  
T Consensus       157 gADG~~S~vR~~i~------------------------------------------------------------------  170 (292)
T d1k0ia1         157 GCDGFHGISRQSIP------------------------------------------------------------------  170 (292)
T ss_dssp             ECCCTTCSTGGGSC------------------------------------------------------------------
T ss_pred             ECCCCCCcccceee------------------------------------------------------------------
Confidence            99999999987531                                                                  


Q ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331          236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI  315 (409)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~  315 (409)
                                                         .          ..+..+...++||++|.++|..|+|+|.++.|+.
T Consensus       171 -----------------------------------~----------~~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~  205 (292)
T d1k0ia1         171 -----------------------------------A----------ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS  205 (292)
T ss_dssp             -----------------------------------G----------GGSEETTEEECGGGTEECCGGGTCHHHHHHHHHH
T ss_pred             -----------------------------------e----------ccccccccccceeeeeecCCcccccccccccccc
Confidence                                               0          0123567899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHh-----cc--chhHHHHHHHHHHH
Q 015331          316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIV-----GY--DGKIINFLRDKIFS  388 (409)
Q Consensus       316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~-----~~--~~~~~~~~r~~~~~  388 (409)
                      .|++.+...+..+                  ....+..|..++..+.....+.+...     .+  ..++...+|+..+.
T Consensus       206 ~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~  267 (292)
T d1k0ia1         206 TLYRLLLKAYREG------------------RGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELE  267 (292)
T ss_dssp             HHHHHHHHHHHHC------------------CGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred             ccccceeeEecCC------------------CHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            9999998876542                  22345566666655555444444332     22  56788888888777


Q ss_pred             HHhhhhhh
Q 015331          389 VLLGRLMM  396 (409)
Q Consensus       389 ~~~~~~~~  396 (409)
                      .+......
T Consensus       268 ~~~~~~~~  275 (292)
T d1k0ia1         268 YYLGSEAG  275 (292)
T ss_dssp             HHHHCHHH
T ss_pred             HHhcCHHH
Confidence            66654433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.92  E-value=6.2e-24  Score=188.07  Aligned_cols=232  Identities=20%  Similarity=0.221  Sum_probs=175.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ..+|+||||||+||++|+.|+++|++|+||||++.+ ...++++.+++++.++|+++|+..+....  +...........
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV--PSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB--CCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhcc--CCCcceeEeccC
Confidence            458999999999999999999999999999998765 34578899999999999999987665332  233333433333


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      +........         .........+...+.....+..+++++++++++..++.++++++||+++++|++|+|||.+|
T Consensus        82 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          82 GERVGSVPA---------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             CCEEEEEEC---------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             Cceeccccc---------ccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            332211111         11123344555555555567899999999999999999999999999999999999999999


Q ss_pred             HhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHH
Q 015331          163 VVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQF  242 (409)
Q Consensus       163 ~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (409)
                      .+|..+.....                                                                     
T Consensus       153 ~~r~~~~~~~~---------------------------------------------------------------------  163 (265)
T d2voua1         153 VVRKRLLGIET---------------------------------------------------------------------  163 (265)
T ss_dssp             HHHHHHHCCCC---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            87653100000                                                                     


Q ss_pred             HHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHH
Q 015331          243 VLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIA  322 (409)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~  322 (409)
                                                    .        ..+....+...||++|...|..++|.+.+++|+..++..+.
T Consensus       164 ------------------------------~--------~~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~  205 (265)
T d2voua1         164 ------------------------------V--------DRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFT  205 (265)
T ss_dssp             ------------------------------C--------SCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------c--------cccccccccccccccccccccccccceeeeccHHHHHHHHh
Confidence                                          0        01134567888999999999999999999999999999887


Q ss_pred             HHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331          323 EASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG  373 (409)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~  373 (409)
                      ..                    ......+..|+..|.++...++..++..+
T Consensus       206 ~~--------------------~~~~~~l~~~~~~r~~~~~~~~~~~r~~g  236 (265)
T d2voua1         206 KN--------------------HDLRGSLQSWETRQLQQGHAYLNKVKKMA  236 (265)
T ss_dssp             HC--------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            61                    26678899999999999888877765443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.85  E-value=2.2e-20  Score=172.81  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH------cCCceEEEeCCCccCCcce-eEEechhHHHHHHHcCCchHHHhhccc----
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR------LGIRSLVLESSESLRVTGF-AITLWTNAWRALDAVGISDSLRQQHIQ----   71 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~------~g~~V~v~E~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~----   71 (409)
                      .++|||||||||||++||+.|+|      .|++|+||||...++...+ |..+.+++++   ++ +.+ ......+    
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~---~l-~p~-~~~~~~~~~~~  105 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFE---EL-FPD-WKEKGAPLNTP  105 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHH---HH-CTT-HHHHTCCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHH---HH-ccc-hhhhccccccc
Confidence            46899999999999999999998      8999999999999876543 5556665543   33 111 1111111    


Q ss_pred             ccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCe
Q 015331           72 LQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLF  138 (409)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~  138 (409)
                      ......... .........+...........+.+.+..+.+.+.+.+.  ++.+..+..+.++...++.
T Consensus       106 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g  173 (380)
T d2gmha1         106 VTEDRFGIL-TEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDG  173 (380)
T ss_dssp             CCEEEEEEE-CSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTS
T ss_pred             eecceEEEe-eccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCC
Confidence            111111111 11111122222222222344557889999999988763  5788889888887776543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=1.5e-16  Score=138.77  Aligned_cols=155  Identities=18%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------ceeEEechhHHHHHH-HcCCchHHHhh-cccccCe
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------GFAITLWTNAWRALD-AVGISDSLRQQ-HIQLQGM   75 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~~~~~l~-~~gl~~~~~~~-~~~~~~~   75 (409)
                      +|||+||||||+|+++|+.|+++|++|+||||++.+...      +............+. ........... .......
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            699999999999999999999999999999998865321      000011111111111 11111110000 0000000


Q ss_pred             EEEe--ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEe
Q 015331           76 VVAS--SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFK  150 (409)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~  150 (409)
                      ....  ...+     +.+...... ...........+.+.|.+.+  .+++++++++|+++..+++.+. |.+.++++++
T Consensus        82 ~~~~~~~~~g-----~~~~~~~~~-~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~  155 (251)
T d2i0za1          82 DIITFFENLG-----VKLKEEDHG-RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLE  155 (251)
T ss_dssp             HHHHHHHHTT-----CCEEECGGG-EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEE
T ss_pred             HHHHHHHhcC-----Ccccccccc-ceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEe
Confidence            0000  0000     000000000 00001223455666666554  3789999999999998887764 8889999999


Q ss_pred             cCEEEEcCCCchHh
Q 015331          151 TKVLIGCDGVNSVV  164 (409)
Q Consensus       151 ad~vV~AdG~~s~v  164 (409)
                      ||.||+|+|..|..
T Consensus       156 a~~vI~AtGg~S~p  169 (251)
T d2i0za1         156 TNHVVIAVGGKSVP  169 (251)
T ss_dssp             CSCEEECCCCSSSG
T ss_pred             cCeEEEccCCcccc
Confidence            99999999998843

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.64  E-value=2e-16  Score=139.95  Aligned_cols=69  Identities=20%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFKKP  173 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~~  173 (409)
                      .++...+.+.|.+.+  .+++++.+++|++++.+++.+.|++++| +++||.||+|+|.+|. +.+.+|+..+
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~  218 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNA  218 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCC
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCcc
Confidence            577788888887755  3789999999999999888999999887 5999999999999996 5777777543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=1.6e-15  Score=132.31  Aligned_cols=144  Identities=23%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-------ceeEE-----------echh-HHHHHHHcCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-------GFAIT-----------LWTN-AWRALDAVGI   61 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~-----------~~~~-~~~~l~~~gl   61 (409)
                      |++.+||+|||||||||++|+.|+++|.+|+||||.+.+...       .+.+.           ..+. ....|.....
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~   80 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence            888999999999999999999999999999999999865321       11111           0000 1122222211


Q ss_pred             chHHHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeE
Q 015331           62 SDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFK  139 (409)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~  139 (409)
                      .+.+... . ..+..+.....+    .+ +           ..-....+.+.|.+.+.  +++++++++|++++..++.+
T Consensus        81 ~~~~~~~-~-~~g~~~~~~~~~----~~-~-----------~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~  142 (253)
T d2gqfa1          81 WDFISLV-A-EQGITYHEKELG----QL-F-----------CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDE  142 (253)
T ss_dssp             HHHHHHH-H-HTTCCEEECSTT----EE-E-----------ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCS
T ss_pred             cchhhhh-h-hcCcceeeecCC----cc-c-----------cccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCc
Confidence            1111000 0 001111111010    00 0           01223456666665542  78999999999998876542


Q ss_pred             E---EEEcCCCEEecCEEEEcCCCch
Q 015331          140 L---VNLADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       140 ~---v~~~~g~~~~ad~vV~AdG~~s  162 (409)
                      .   +...++.+++||.||+|+|..|
T Consensus       143 ~v~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         143 KVRFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             SCCEEEEETTEEEEESEEEECCCCSS
T ss_pred             eeEEEEecCCEEEEeCEEEEcCCccc
Confidence            2   3345667899999999999877

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.57  E-value=2.8e-15  Score=132.86  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCC
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFK  171 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~  171 (409)
                      .++...+...|.+.+  .+++++++++|++++.+++++.|++++| +++||.||+|+|.+|. +.+.+|+.
T Consensus       146 ~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~  215 (281)
T d2gf3a1         146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNLD  215 (281)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEE
T ss_pred             cccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCCc
Confidence            456677888887655  3789999999999999999999999888 4999999999999985 34455543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.52  E-value=8e-15  Score=133.31  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhccc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQ   71 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~   71 (409)
                      |....+|+|||||+|||++|..|++.|  .+|+||||++.++...       ....+...  ..  .............+
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~   76 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST--NP--ILTTEPIVGPAALP   76 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBC--CT--TCCCCCBCCSSSCC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccc--cc--cccccccccccccc
Confidence            555568999999999999999998876  5999999998764211       10000000  00  00000000000000


Q ss_pred             ccCeEEEecc-CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCC-
Q 015331           72 LQGMVVASSV-SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGA-  147 (409)
Q Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~-  147 (409)
                      ......+... .........+...... ......+++.++.++|.+.+.  +..|+++++|++++.++++|+|++.+++ 
T Consensus        77 ~~~s~~y~~l~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~  155 (335)
T d2gv8a1          77 VYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA  155 (335)
T ss_dssp             BCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred             ccccccchhhhcCCcHhhhhhhhhcCC-cccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCC
Confidence            0000000000 0000000111111111 111225678888888876543  4689999999999999999999886542 


Q ss_pred             -----EEecCEEEEcCCCch
Q 015331          148 -----VFKTKVLIGCDGVNS  162 (409)
Q Consensus       148 -----~~~ad~vV~AdG~~s  162 (409)
                           +..||.||.|+|..|
T Consensus       156 ~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         156 GSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             TCCEEEEEESEEEECCCSSS
T ss_pred             CCeEEEEEeeEEEEcccccc
Confidence                 457999999999887

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.47  E-value=7.2e-14  Score=123.49  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=36.2

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +..++.++.+..+...++.+.|++.+|+.+.+|.++.+...
T Consensus       224 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             ccccccccccccccccCccEEEEECCCCEEEcCEEEeecCH
Confidence            35789999999999999999999999999999999987653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.46  E-value=7.4e-14  Score=123.94  Aligned_cols=132  Identities=19%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+|||||++||++|..|+++|++|+|||+.+.++...          . ..             ...+........
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW----------~-~n-------------~ypg~~~d~~~~   61 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW----------Y-WN-------------RYPGARCDIESI   61 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH----------H-HC-------------CCTTCBCSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc----------c-cC-------------CCCCceeccccc
Confidence            35799999999999999999999999999999998754210          0 00             000100000000


Q ss_pred             Ccc--cccccccccCCCCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEE
Q 015331           83 CQP--ASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVL  154 (409)
Q Consensus        83 ~~~--~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~v  154 (409)
                      ...  .....+...    ........+.++.++|.+.+.  +.  .|+++++|+++..++  +.|+|++.++.++++|+|
T Consensus        62 ~~~~s~~~~~~~~~----~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~  137 (298)
T d1w4xa1          62 EYCYSFSEEVLQEW----NWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYL  137 (298)
T ss_dssp             TSSCCSCHHHHHHC----CCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEE
T ss_pred             cccccccccccCCC----CCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceE
Confidence            000  000000000    111123456677777665432  33  799999999998654  679999999999999999


Q ss_pred             EEcCCCch
Q 015331          155 IGCDGVNS  162 (409)
Q Consensus       155 V~AdG~~s  162 (409)
                      |.|+|..|
T Consensus       138 i~atG~ls  145 (298)
T d1w4xa1         138 IMASGQLS  145 (298)
T ss_dssp             EECCCSCC
T ss_pred             EEeecccc
Confidence            99999765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.44  E-value=5.1e-13  Score=119.44  Aligned_cols=71  Identities=24%  Similarity=0.347  Sum_probs=56.9

Q ss_pred             ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchH-hHhHhCCCCCcc
Q 015331          104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSV-VAKWLGFKKPAF  175 (409)
Q Consensus       104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~~~~  175 (409)
                      .++...+...|.+.+  .+++++.+++|++++.++++++ |.+++| +++||.||+|+|.+|. +.+.+|...+..
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~lP~~  218 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPPD  218 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCTT
T ss_pred             ccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCccccc
Confidence            567778888887655  3789999999999999998765 777776 5999999999999996 466667665443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.30  E-value=7.1e-12  Score=112.01  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +||+||||||+||++|+.|+++|++|+|||+++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            489999999999999999999999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-11  Score=112.16  Aligned_cols=41  Identities=12%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331          120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus       120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      +++++++++|..|..+++++.|++.+|++++||.||.|.+.
T Consensus       221 g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         221 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            67899999999999999999999999999999999998653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.27  E-value=2.2e-11  Score=108.82  Aligned_cols=38  Identities=24%  Similarity=0.541  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +++||+|||||++|+++|+.|+++|.+|+|+||.+...
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG   52 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            35899999999999999999999999999999987653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=8.4e-11  Score=88.34  Aligned_cols=95  Identities=20%  Similarity=0.263  Sum_probs=75.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                  +.++                   
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~------------------~d~~-------------------   63 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------FDPM-------------------   63 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh------------------cchh-------------------
Confidence            358999999999999999999999999999988753110                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                                           + ...+.+.|.++  ++++++++.|+.+..+++ .+++++++|+++.+|.||.|.|
T Consensus        64 ---------------------~-~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ---------------------I-SETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ---------------------H-HHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             ---------------------h-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                                 0 12355555555  799999999999988754 5789999999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.23  E-value=3.3e-11  Score=109.11  Aligned_cols=38  Identities=42%  Similarity=0.607  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+.+|+||||||+||++|+.|+++|++|+|||+++.++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34699999999999999999999999999999988653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.21  E-value=4.8e-11  Score=107.20  Aligned_cols=36  Identities=31%  Similarity=0.552  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .+||+|||||++|+++|+.|+++|.+|+|+||.+..
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~   58 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP   58 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            579999999999999999999999999999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.15  E-value=5.4e-10  Score=84.18  Aligned_cols=95  Identities=22%  Similarity=0.281  Sum_probs=74.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +.++                   
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~------------------~d~e-------------------   64 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------VDEQ-------------------   64 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc------------------ccch-------------------
Confidence            468999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG  159 (409)
                                           + ...+.+.|.+.  +++++.+++|+.++.++++++|++.++   +++.||.|+.|.|
T Consensus        65 ---------------------i-~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          65 ---------------------V-AKEAQKILTKQ--GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ---------------------h-HHHHHHHHHhc--CceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                                 0 22344555543  789999999999999999988888765   4789999999988

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=7e-10  Score=99.76  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      +++||+|||+|+|||++|+.++++|.+|+|+||.+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            46899999999999999999999999999999987543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.5e-10  Score=96.66  Aligned_cols=121  Identities=18%  Similarity=0.081  Sum_probs=74.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      .||||||||||||+.+|+.+++.|.+++||+++.+. ....+.-...          +........              
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~g----------g~~kg~l~r--------------   57 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPP----------FPPGSLLER--------------   57 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSC----------CCTTCHHHH--------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccc----------cCCCcceee--------------
Confidence            589999999999999999999999999999987431 1111100000          000000000              


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEEEEcCCCc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                           ...      ...+..+ -.|..+.+.+. ..++..++.. +|+++..+++.+ .|.+.+|.++.|+.||.|+|.+
T Consensus        58 -----eid------~kG~av~-a~raQ~k~~l~-~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          58 -----AYD------PKDERVW-AFHARAKYLLE-GLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             -----HCC------TTCCCHH-HHHHHHHHHHH-TCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             -----eee------ccchhhh-hHHHHHHHHHh-hhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence                 000      0011111 12333434333 3446677665 677777776665 5899999999999999999976


Q ss_pred             h
Q 015331          162 S  162 (409)
Q Consensus       162 s  162 (409)
                      .
T Consensus       124 L  124 (230)
T d2cula1         124 L  124 (230)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.14  E-value=1.4e-10  Score=103.79  Aligned_cols=37  Identities=30%  Similarity=0.552  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||||||||++||++|+.|+++|.+|+|+||.+..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.12  E-value=9.9e-10  Score=84.43  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-...                 +.+.                  
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-----------------~~~~------------------   78 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------TAPP------------------   78 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------SCHH------------------
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc-----------------cchh------------------
Confidence            34689999999999999999999999999999887532110                 0000                  


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC--e-EEEEEcCCCEEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL--F-KLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~--~-~~v~~~~g~~~~ad~vV~AdG  159 (409)
                                            + ...+.+.+.++  +++++++++|+.++..++  . ..+.+++|+++.+|+||.|.|
T Consensus        79 ----------------------~-~~~~~~~~~~~--GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          79 ----------------------V-SAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ----------------------H-HHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ----------------------h-hhhhhhccccc--ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                                  0 12344455554  789999999999987643  2 347899999999999999987

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.11  E-value=4e-10  Score=101.62  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=35.0

Q ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |+ +.+||||||||+|||++|+.|+++|.+|+|+||.+..
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            55 3579999999999999999999999999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.08  E-value=1.3e-09  Score=82.19  Aligned_cols=92  Identities=17%  Similarity=0.297  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||++|+-+|..|+++|.+|+|+|+.+.+-...                 +.+                    
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------------~~~--------------------   72 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------APA--------------------   72 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCH--------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc-----------------CCH--------------------
Confidence            4689999999999999999999999999999887531100                 000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                                           --+..+.+.|.++  +++++++++|+.+..  +  .|.++||+++.||+||.|.|
T Consensus        73 ---------------------~~~~~~~~~l~~~--GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          73 ---------------------TLADFVARYHAAQ--GVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ---------------------HHHHHHHHHHHTT--TCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             ---------------------HHHHHHHHHHHHC--CcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence                                 0012334444443  789999999987653  2  47789999999999999988

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=6.9e-10  Score=97.23  Aligned_cols=129  Identities=20%  Similarity=0.257  Sum_probs=77.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCccCCcce-------eEEechhHHHHHHHcCCchHHHhhcccccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSESLRVTGF-------AITLWTNAWRALDAVGISDSLRQQHIQLQG   74 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~~~~~~~~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~   74 (409)
                      .++||+||||||+||++|+.|++ .|++|+|||+.+.++....       ...+......+++++++.            
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~------------   99 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA------------   99 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC------------
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCc------------
Confidence            36899999999999999999987 5999999999987643211       122223333333333211            


Q ss_pred             eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEE--------
Q 015331           75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNL--------  143 (409)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~--------  143 (409)
                        +....                 ........+..+...+.+.+  .+..+..++.+..+...++.+. +..        
T Consensus       100 --~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~  160 (278)
T d1rp0a1         100 --YDEQD-----------------TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQN  160 (278)
T ss_dssp             --CEECS-----------------SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTC
T ss_pred             --eecCC-----------------ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeee
Confidence              00000                 00011122344444444433  2467888888888887776543 111        


Q ss_pred             ------cCCCEEecCEEEEcCCCch
Q 015331          144 ------ADGAVFKTKVLIGCDGVNS  162 (409)
Q Consensus       144 ------~~g~~~~ad~vV~AdG~~s  162 (409)
                            .++.++.++++|+|+|...
T Consensus       161 ~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         161 HHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             TTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             ecccccccceeeccceEEECcCCCc
Confidence                  1224689999999999654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.2e-09  Score=83.04  Aligned_cols=96  Identities=26%  Similarity=0.314  Sum_probs=73.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            5 EDIVIVGAGIAGLTTSLALHR----LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~----~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      .+++|||||++|+-+|..|++    .|.+|+++|+.+.+-...                 +.++                
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~-----------------~~~~----------------   84 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------LPEY----------------   84 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------SCHH----------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc-----------------CCHH----------------
Confidence            479999999999999999864    589999999876421100                 0000                


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                              + ...+.+.|.++  ++++++++.|..++.+++.+.|++++|+++.||+||.|.|.
T Consensus        85 ------------------------~-~~~~~~~l~~~--GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          85 ------------------------L-SNWTMEKVRRE--GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             ------------------------H-HHHHHHHHHTT--TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ------------------------H-HHHHHHHHHhC--CcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence                                    0 11233444433  79999999999999999999999999999999999999983

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.05  E-value=2.2e-09  Score=80.60  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +.+++|||||++|+-+|..|++.   |.+|+++|+.+.+-+.                  +.++                
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~------------------~d~~----------------   63 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------FDSE----------------   63 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------SCHH----------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc------------------ccch----------------
Confidence            35899999999999999887764   8899999987643210                  0000                


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDG  159 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG  159 (409)
                                              + +..+.+.|.++  ++++++++.|+.++.+++ ...+.+++|+++.||+||.|.|
T Consensus        64 ------------------------~-~~~~~~~l~~~--GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          64 ------------------------L-RKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             ------------------------H-HHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             ------------------------h-hHHHHHHHhhC--cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence                                    0 23345555554  789999999999987654 4578999999999999999999


Q ss_pred             C
Q 015331          160 V  160 (409)
Q Consensus       160 ~  160 (409)
                      +
T Consensus       117 R  117 (117)
T d1feca2         117 R  117 (117)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=8.9e-11  Score=101.77  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      |+++|||||||||++||+||+.|+++|++|+|||+++.++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            88999999999999999999999999999999999987643

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1e-09  Score=97.69  Aligned_cols=37  Identities=27%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      .++||+|||+|+|||++|+.++++  |.+|+|+||.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            468999999999999999999986  6789999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.03  E-value=3.1e-09  Score=79.48  Aligned_cols=94  Identities=21%  Similarity=0.362  Sum_probs=71.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +.+                   
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~------------------~d~-------------------   63 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FDE-------------------   63 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SCH-------------------
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc------------------ccH-------------------
Confidence            3468999999999999999999999999999988743110                  000                   


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC-CeEEEEEcCCCEEe-cCEEEEc
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG-LFKLVNLADGAVFK-TKVLIGC  157 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~-~~~~v~~~~g~~~~-ad~vV~A  157 (409)
                                            --+..+.+.|.++  +++++++++|+.++..+ +.+++++++|+++. +|.||.|
T Consensus        64 ----------------------~~~~~~~~~l~~~--gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 ----------------------SVINVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             ----------------------HHHHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             ----------------------HHHHHHHHHHHhC--CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                                  0022344555543  78999999999998765 45889999998775 6999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.03  E-value=3.8e-09  Score=79.30  Aligned_cols=92  Identities=14%  Similarity=0.265  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +.+                    
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~------------------~d~--------------------   63 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------FEK--------------------   63 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------SCH--------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc------------------ccc--------------------
Confidence            468999999999999999999999999999988853110                  000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC-C--CEEecCEEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD-G--AVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~-g--~~~~ad~vV~  156 (409)
                                          .+ ...+.+.|.++  +++++++++|++++.+++++.+.+.. |  +++.+|.||.
T Consensus        64 --------------------~~-~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          64 --------------------QM-AAIIKKRLKKK--GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             --------------------HH-HHHHHHHHHHT--TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             --------------------hh-HHHHHHHHHhc--CCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence                                00 22345555554  79999999999999998888777653 3  4689999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.00  E-value=1e-09  Score=82.19  Aligned_cols=93  Identities=23%  Similarity=0.331  Sum_probs=67.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +                    + 
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~------------------~--------------------d-   61 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------Y--------------------D-   61 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S--------------------C-
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc------------------c--------------------c-
Confidence            358999999999999999999999999999988743110                  0                    0 


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~AdG  159 (409)
                                      .   -+ +..+.+.|.++  +++++.+++|++++  ++...+...++  .++.||.||.|.|
T Consensus        62 ----------------~---~~-~~~l~~~l~~~--gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          62 ----------------S---EL-TAPVAESLKKL--GIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ----------------H---HH-HHHHHHHHHHH--TCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ----------------c---hh-HHHHHHHHHhh--cceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                            0   01 23455566655  78999999999885  33333333333  4799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.98  E-value=4.7e-09  Score=79.42  Aligned_cols=96  Identities=21%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+++|||||+.|+=+|..+++.|.+|+|+|+.+.+-+.                  +..+                   
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~------------------~d~~-------------------   68 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------ADRD-------------------   68 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc------------------chhh-------------------
Confidence            458999999999999999999999999999988743211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDG  159 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG  159 (409)
                                           + ...+.+.|.++  +++++.++++..++.+++++.|.+.++    ++++||+|+.|.|
T Consensus        69 ---------------------~-~~~l~~~l~~~--gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          69 ---------------------L-VKVWQKQNEYR--FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             ---------------------H-HHHHHHHHGGG--EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             ---------------------H-HHHHHHHHHHc--CcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence                                 0 22344555543  689999999999999998887776543    3799999999999


Q ss_pred             C
Q 015331          160 V  160 (409)
Q Consensus       160 ~  160 (409)
                      +
T Consensus       125 R  125 (125)
T d1ojta2         125 R  125 (125)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.95  E-value=5.8e-09  Score=78.87  Aligned_cols=92  Identities=18%  Similarity=0.302  Sum_probs=67.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-...                 +.+                     
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~-----------------~d~---------------------   72 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY-----------------LDK---------------------   72 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------CCH---------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc-----------------cch---------------------
Confidence            589999999999999999999999999999887431100                 000                     


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A  157 (409)
                                      .   + ...+.+.|.++  ++++++++.+..++.++ .+...+.+|+++.||+||.|
T Consensus        73 ----------------~---~-~~~~~~~l~~~--gv~~~~~~~v~~i~~~~-~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          73 ----------------E---F-TDVLTEEMEAN--NITIATGETVERYEGDG-RVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             ----------------H---H-HHHHHHHHHTT--TEEEEESCCEEEEECSS-BCCEEEESSCEEECSEEEEC
T ss_pred             ----------------h---h-HHHHHHHhhcC--CeEEEeCceEEEEEcCC-CEEEEEeCCCEEECCEEEEE
Confidence                            0   0 11233444433  78999999999998754 44444678889999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.1e-08  Score=77.04  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=68.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..+                   
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~------------------~d~e-------------------   65 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------MDGE-------------------   65 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------SCHH-------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh------------------hhhh-------------------
Confidence            468999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe--EEEEEcCC-----CEEecCEEEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF--KLVNLADG-----AVFKTKVLIG  156 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~--~~v~~~~g-----~~~~ad~vV~  156 (409)
                                           + ...+.+.|.++  +++++++++|+.++.++++  +.+++.++     +++++|+|+.
T Consensus        66 ---------------------i-~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          66 ---------------------V-AKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             ---------------------h-HHHHHHHHHhc--cceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence                                 0 12344555544  7899999999999987665  44555443     3789999997


Q ss_pred             c
Q 015331          157 C  157 (409)
Q Consensus       157 A  157 (409)
                      |
T Consensus       122 A  122 (122)
T d1v59a2         122 A  122 (122)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.8e-08  Score=76.34  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +..                    
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~--------------------   63 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------FDS--------------------   63 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH--------------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc------------------hhh--------------------
Confidence            358999999999999999999999999999988743110                  000                    


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CCC------EEecCEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DGA------VFKTKVL  154 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~------~~~ad~v  154 (409)
                                          .+ ...+.+.|.++  +++++.+++++.++.+++++.+...   .|.      .+.+|+|
T Consensus        64 --------------------~~-~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~v  120 (125)
T d3grsa2          64 --------------------MI-STNCTEELENA--GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCL  120 (125)
T ss_dssp             --------------------HH-HHHHHHHHHHT--TCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEE
T ss_pred             --------------------HH-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEE
Confidence                                00 23355555543  7999999999999999888766543   232      4689999


Q ss_pred             EEcCC
Q 015331          155 IGCDG  159 (409)
Q Consensus       155 V~AdG  159 (409)
                      |.|.|
T Consensus       121 l~a~G  125 (125)
T d3grsa2         121 LWAIG  125 (125)
T ss_dssp             EECSC
T ss_pred             EEEeC
Confidence            99987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.90  E-value=2.1e-08  Score=74.96  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      ..+++|||||+.|+-+|..|++.   |.+|+|+|+.+.+-+.                  +.++                
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~------------------~d~~----------------   65 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG------------------FDHT----------------   65 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT------------------SCHH----------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc------------------cchH----------------
Confidence            35899999999999999888765   4579999987642110                  0000                


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC-CeEEEEEcCCCEEecCEEEEc
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG-LFKLVNLADGAVFKTKVLIGC  157 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~-~~~~v~~~~g~~~~ad~vV~A  157 (409)
                                              + ...+.+.|.++  +++++++++++.++.++ +...|++++|+++.||.||.|
T Consensus        66 ------------------------~-~~~l~~~l~~~--GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          66 ------------------------L-REELTKQLTAN--GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             ------------------------H-HHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             ------------------------H-HHHHHHHHHhc--CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                                    0 23455566654  89999999999998765 458899999999999999976

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=1.9e-09  Score=88.77  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      +++||+||||||+|+.+|+.|+|+|.+|+|+|+.........+.                  +      .......   .
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~------------------~------~~~~~~~---~   56 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------------L------TTTTDVE---N   56 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------------G------GGCSEEC---C
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc------------------c------ccchhhh---c
Confidence            56899999999999999999999999999999776432211100                  0      0000000   0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                           ...++          ..+...++...+.+++.  +.++..+ .|..++..++.+.+.+.. ..+.+|.++.+.|.
T Consensus        57 -----~~~~~----------~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~  119 (192)
T d1vdca1          57 -----FPGFP----------EGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGA  119 (192)
T ss_dssp             -----STTCT----------TCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCE
T ss_pred             -----ccccc----------ccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeee
Confidence                 00000          02345556665554332  5677655 688888777766666554 46899999999996


Q ss_pred             c
Q 015331          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       120 ~  120 (192)
T d1vdca1         120 V  120 (192)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.85  E-value=2.4e-08  Score=75.34  Aligned_cols=95  Identities=18%  Similarity=0.278  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+.                  +.++                   
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~------------------~d~~-------------------   64 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------KDNE-------------------   64 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------CSHH-------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc------------------cccc-------------------
Confidence            358999999999999999999999999999987743211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE--E---EEcCCCEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL--V---NLADGAVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~--v---~~~~g~~~~ad~vV~Ad  158 (409)
                                           + +..+.+.|.++  +++++.+++++.++.+++...  +   ...+++++.||+||.|.
T Consensus        65 ---------------------~-~~~~~~~l~~~--gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          65 ---------------------T-RAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             ---------------------h-hhhhhhhhhcc--ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence                                 0 23344555544  789999999999998765422  1   22345679999999998


Q ss_pred             C
Q 015331          159 G  159 (409)
Q Consensus       159 G  159 (409)
                      |
T Consensus       121 G  121 (121)
T d1mo9a2         121 G  121 (121)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=5.6e-09  Score=85.77  Aligned_cols=110  Identities=17%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++.||+||||||+|+.+|+.|++.|.+|+|||+........                        .   ...+.     +
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~------------------------~---~~~i~-----~   51 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT------------------------T---TTEVE-----N   51 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG------------------------G---CSBCC-----C
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc------------------------c---cchhh-----h
Confidence            56799999999999999999999999999999765321100                        0   00000     0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                           ...++          ..+...++.+.+.+.+.  +..+.++ +|+.+...++.+.++...+ .+.++.+|.|.|.
T Consensus        52 -----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~  114 (190)
T d1trba1          52 -----WPGDP----------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNG-EYTCDALIIATGA  114 (190)
T ss_dssp             -----STTCC----------SSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSC-EEEEEEEEECCCE
T ss_pred             -----hhccc----------cccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEeee-eEeeeeeeeecce
Confidence                 00000          01223344444443321  4555554 6888888877777776554 5899999999996


Q ss_pred             c
Q 015331          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       115 ~  115 (190)
T d1trba1         115 S  115 (190)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=9.2e-09  Score=77.66  Aligned_cols=89  Identities=20%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ   84 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~   84 (409)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                   +.+++                   
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~~-------------------   74 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------LDEEL-------------------   74 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------CCHHH-------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-------------------CCHHH-------------------
Confidence            5799999999999999999999999999998764210                   00000                   


Q ss_pred             ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                                            +..+.+.|.++  +++++.++++.+++.+  .  + +.+++.+.+|+||.|.|.
T Consensus        75 ----------------------~~~~~~~l~~~--GV~~~~~~~v~~~~~~--~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          75 ----------------------SNMIKDMLEET--GVKFFLNSELLEANEE--G--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             ----------------------HHHHHHHHHHT--TEEEECSCCEEEECSS--E--E-EETTEEEECSCEEEECCE
T ss_pred             ----------------------HHHHHHHHHHC--CcEEEeCCEEEEEeCC--E--E-EeCCCEEECCEEEEEEEe
Confidence                                  12234445543  7899999999887543  2  2 456778999999999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=7.8e-10  Score=94.11  Aligned_cols=39  Identities=28%  Similarity=0.584  Sum_probs=36.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      |.++|||+||||||||+++|..|++.|.+|+|||+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            778999999999999999999999999999999987654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.82  E-value=1.7e-08  Score=76.26  Aligned_cols=94  Identities=23%  Similarity=0.386  Sum_probs=70.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||..|+-+|..|++.|.+|+|+|+.+.+.+.                  +.++                   
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~------------------~d~~-------------------   67 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------MDAE-------------------   67 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCHH-------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch------------------hhhc-------------------
Confidence            358999999999999999999999999999988753211                  0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcC
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCD  158 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~Ad  158 (409)
                                            -...+.+.|.++  +++++.|+++..++.++++++|++.   +|  ++++||+|+.|.
T Consensus        68 ----------------------~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          68 ----------------------IRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ----------------------HHHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ----------------------chhhhhhhhhcc--cceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                                  023355666554  7899999999999988877766543   23  358999998873

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2e-09  Score=86.64  Aligned_cols=38  Identities=21%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      .+.+|+|||||||||++|+.|+++|++|+|||+.+.+.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            35799999999999999999999999999999998754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=8.3e-09  Score=91.46  Aligned_cols=36  Identities=31%  Similarity=0.504  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++||||||+|+|||++|+.+++.| +|+|+||.+..
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            4689999999999999999999888 99999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.79  E-value=2.3e-09  Score=90.70  Aligned_cols=38  Identities=21%  Similarity=0.533  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++|||+||||||||+++|+.|+++|.+|+|||+....
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            47899999999999999999999999999999987643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.6e-09  Score=89.41  Aligned_cols=132  Identities=15%  Similarity=0.158  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS   80 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~   80 (409)
                      +++++||||||++|+.+|..|+++|.  +|+++++.+.+......  ++.   .++.. .......       ...+...
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~--Ls~---~~~~~-~~~~~~~-------~~~~~~~   69 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPP--LSK---ELWFS-DDPNVTK-------TLRFKQW   69 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGG--GGT---GGGCC---CTHHH-------HCEEECT
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccc--cce---ecccc-cCchhhh-------hhhhhhc
Confidence            35789999999999999999998876  59999987654221110  000   00000 0000000       0111111


Q ss_pred             cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                      .. .. ..+.+...      . +.+....+ ..+.  -.+++++.+++|+.|+.++.  +|++++|+++.||.||.|+|.
T Consensus        70 ~~-~~-~~~~~~~~------~-~~~~~~~~-~~~~--~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          70 NG-KE-RSIYFQPP------S-FYVSAQDL-PHIE--NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TS-CE-EESBSSCG------G-GSBCTTTT-TTST--TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             cc-ch-hhhhcCCh------h-hhhhhhhH-HHHH--HCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            11 00 01111100      0 01111100 0111  12579999999999976655  578899999999999999995


Q ss_pred             c
Q 015331          161 N  161 (409)
Q Consensus       161 ~  161 (409)
                      .
T Consensus       136 ~  136 (213)
T d1m6ia1         136 T  136 (213)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.76  E-value=3.2e-09  Score=91.79  Aligned_cols=37  Identities=30%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |..+.+|+|||||++||++|+.|+++|++|+||||+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4456799999999999999999999999999999975

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.72  E-value=1e-08  Score=91.22  Aligned_cols=37  Identities=24%  Similarity=0.491  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      .+|+|||||||||+||+.|+++|++|+|||+++.++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            4799999999999999999999999999999887643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=2.1e-07  Score=69.79  Aligned_cols=94  Identities=16%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+++|||||+.|+-+|..|++.|.+|+|++++...+.                   +.++                   
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~-------------------~D~~-------------------   61 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FDQD-------------------   61 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT-------------------SCHH-------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhcc-------------------CCHH-------------------
Confidence            35899999999999999999999999999996531100                   0000                   


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC----CeEEEEEcCCC-----EEecCEE
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG----LFKLVNLADGA-----VFKTKVL  154 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~----~~~~v~~~~g~-----~~~ad~v  154 (409)
                                           + ...+.+.|.++  ++++++++.|+.++..+    ....+++..+.     ...+|.|
T Consensus        62 ---------------------~-~~~l~~~l~~~--Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~v  117 (122)
T d1h6va2          62 ---------------------M-ANKIGEHMEEH--GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTV  117 (122)
T ss_dssp             ---------------------H-HHHHHHHHHHT--TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEE
T ss_pred             ---------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEE
Confidence                                 0 12355555554  78999999999997643    23555554431     4578999


Q ss_pred             EEcCC
Q 015331          155 IGCDG  159 (409)
Q Consensus       155 V~AdG  159 (409)
                      +.|.|
T Consensus       118 l~AiG  122 (122)
T d1h6va2         118 LLAVG  122 (122)
T ss_dssp             ECCCC
T ss_pred             EEEeC
Confidence            99987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=6.5e-09  Score=87.47  Aligned_cols=38  Identities=26%  Similarity=0.629  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +++|||+||||||||+++|+.+++.|.+|+|||+.+..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            46899999999999999999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.3e-09  Score=93.51  Aligned_cols=38  Identities=24%  Similarity=0.617  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ++.+|||||||+|||+||+.|+++|++|+|+|+++.++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            56789999999999999999999999999999998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=7.6e-09  Score=91.32  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      +||+|||||++||++|+.|+++|++|+|||+++.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            6999999999999999999999999999999987644

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.67  E-value=2.8e-08  Score=89.96  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHR----LGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~----~g~~V~v~E~~~~~   39 (409)
                      ++||+|||+|+|||++|+.|++    +|.+|+|+||.+..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            4799999999999999999986    69999999998754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=9.4e-09  Score=87.06  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|||+|||||||||++|..|+++|.+|+|||+.+.+
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            589999999999999999999999999999988754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.1e-08  Score=85.92  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|||+||||||+|+++|..+++.|.+|+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            47999999999999999999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.58  E-value=1e-07  Score=78.53  Aligned_cols=109  Identities=15%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS   82 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~   82 (409)
                      ++|+|||||++|+.+|..|++.  +.+|+++|+.+.+....++       +..+        +                .
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~-------~~~~--------l----------------~   49 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAG-------MQLY--------L----------------E   49 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGG-------HHHH--------H----------------T
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccC-------cchh--------h----------------c
Confidence            3799999999999999999987  4579999988754322111       1100        0                0


Q ss_pred             CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEEEcCC
Q 015331           83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLIGCDG  159 (409)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV~AdG  159 (409)
                      +.. ...  .        .......    +.|.++  +++++.+++|.+++.+++.++++. .+|+  ++.+|.+|.|.|
T Consensus        50 ~~~-~~~--~--------~~~~~~~----~~l~~~--gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G  112 (198)
T d1nhpa1          50 GKV-KDV--N--------SVRYMTG----EKMESR--GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPG  112 (198)
T ss_dssp             TSS-CCG--G--------GSBSCCH----HHHHHT--TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ccc-cch--H--------HHHHhhH----HHHHHC--CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeec
Confidence            000 000  0        0001112    223322  789999999999998888877764 4454  578999999999


Q ss_pred             Cc
Q 015331          160 VN  161 (409)
Q Consensus       160 ~~  161 (409)
                      ..
T Consensus       113 ~~  114 (198)
T d1nhpa1         113 AV  114 (198)
T ss_dssp             EE
T ss_pred             ce
Confidence            64

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.58  E-value=2.3e-08  Score=88.78  Aligned_cols=38  Identities=24%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      +.+|+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            46899999999999999999999999999999997653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.57  E-value=2.6e-08  Score=81.91  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      ..+|+||||||+||++|+.|+++|+ +|+||||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            5699999999999999999999998 59999998754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.7e-08  Score=85.78  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +|||+||||||||+++|+.+++.|.+|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            689999999999999999999999999999987653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=1.6e-08  Score=86.06  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-------CceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-------IRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-------~~V~v~E~~~~~~   40 (409)
                      +++|+|||||||||+||+.|+++|       ++|+|||+.+.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            579999999999999999999988       5799999988654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.54  E-value=2.7e-08  Score=90.65  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=36.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |..+|||||||+|++|+.+|..|+++|++|+|+|+...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            78899999999999999999999999999999999764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.6e-08  Score=81.03  Aligned_cols=32  Identities=34%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      |||+||||||+|+.+|..+++.|.+|+|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            79999999999999999999999999999975

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.50  E-value=3.9e-08  Score=82.60  Aligned_cols=35  Identities=23%  Similarity=0.509  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++||+||||||+|+++|..+++.|.+|+|||+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            68999999999999999999999999999998763

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=4.2e-08  Score=82.33  Aligned_cols=35  Identities=23%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|++||||||+|+.+|..+++.|.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46899999999999999999999999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.46  E-value=7.8e-08  Score=81.42  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ...+|+||||||||+++|..|+++|++|+|+|+.+.+.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            45799999999999999999999999999999988653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.5e-08  Score=81.13  Aligned_cols=34  Identities=32%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6999999999999999999999999999999865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.41  E-value=4.2e-07  Score=73.66  Aligned_cols=106  Identities=17%  Similarity=0.249  Sum_probs=66.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      +.+|+|||||++|+.+|..|++.|.+|.|++..+.....-   ....          +...+....            ..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~---~~~~----------l~~~~~~~~------------~~   57 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY---DRPP----------LSKDFMAHG------------DA   57 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB---CSGG----------GGTTHHHHC------------CG
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccch---hhHH----------Hhhhhhhhh------------hh
Confidence            4579999999999999999999999888877654322100   0000          000000000            00


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN  161 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (409)
                      .   .+.              ..        .....+++++.+++++.++.+..  .+.+.+|+++.+|+||.|.|..
T Consensus        58 ~---~~~--------------~~--------~~~~~~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          58 E---KIR--------------LD--------CKRAPEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             G---GSB--------------CC--------GGGSTTCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             h---hHH--------------HH--------HhhcCCeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEEE
Confidence            0   000              00        00122678999999998876554  5678899999999999999954

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.39  E-value=5.8e-07  Score=71.55  Aligned_cols=102  Identities=15%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP   85 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~   85 (409)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+.....          .+.+      ......           ..  
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~----------~~~~------~~~~~~-----------~~--   51 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP----------MLSH------YIAGFI-----------PR--   51 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST----------THHH------HHTTSS-----------CG--
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc----------chhh------hhhhhh-----------hh--
Confidence            79999999999999999965 779999998775432110          0000      000000           00  


Q ss_pred             cccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331           86 ASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV  160 (409)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (409)
                       ..+              ....   .+.+.+.  +++++.++.++.++....   +.+.++.++.+|.+|.|.|.
T Consensus        52 -~~~--------------~~~~---~~~~~~~--~v~~~~~~~v~~i~~~~~---~~~~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          52 -NRL--------------FPYS---LDWYRKR--GIEIRLAEEAKLIDRGRK---VVITEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             -GGG--------------CSSC---HHHHHHH--TEEEECSCCEEEEETTTT---EEEESSCEEECSEEEECCCE
T ss_pred             -hhh--------------hHHH---HHHHHhc--cceeeeeccccccccccc---cccccccccccceeEEEEEe
Confidence             000              0000   1222222  678999999988865433   44556778999999999995

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=1.2e-07  Score=79.99  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~   39 (409)
                      .+|+|||||||||+||..|+++  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999876  7799999998865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.1e-07  Score=82.42  Aligned_cols=37  Identities=30%  Similarity=0.532  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~   40 (409)
                      ++||+||||||+||++|+.|+++  |++|+|||+++.++
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            57999999999999999999975  99999999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.33  E-value=2.1e-07  Score=78.73  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ++.|||+||||||||+++|..+++.|. +|+|+|+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            467999999999999999999999886 688989764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.32  E-value=2e-07  Score=80.21  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ||++||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            799999999999999999999999999999864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.32  E-value=1.6e-07  Score=79.80  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      +++|||+||||||||+++|..+++.|. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            478999999999999999999999986 5999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.21  E-value=6.8e-07  Score=76.83  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ++||++||||||+|+.+|..|++.|.+|+|+|+.+...
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            57999999999999999999999999999999987653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.14  E-value=7.6e-07  Score=80.68  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +++||||||+|++|+.+|..|+++|++|+|+|+..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999863

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.07  E-value=2.8e-07  Score=78.29  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=27.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      ++|+|||||++||++|+.|+++|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            3799999999999999999999987665554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.05  E-value=1.7e-06  Score=78.25  Aligned_cols=33  Identities=27%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .||||||+|++|+.+|..|+++|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            489999999999999999999999999999964

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.03  E-value=1.6e-06  Score=78.18  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +||+||||+|++|+.+|..|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            6899999999999999999999999999999984

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.93  E-value=3.2e-06  Score=77.06  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      .||+||||||.+|+.+|..|++.| ++|+|+|+.+.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999988 79999999863

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.86  E-value=3.5e-06  Score=76.62  Aligned_cols=34  Identities=41%  Similarity=0.591  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      .||+||||||.+|+.+|..|++.+ ++|+|+|+.+
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            489999999999999999999875 8999999985

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=4.5e-06  Score=70.22  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC---CceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG---IRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g---~~V~v~E~~~   37 (409)
                      .+|+||||||||+++|..+++.|   .+|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            48999999999999999998865   5799999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.84  E-value=2.4e-06  Score=76.63  Aligned_cols=34  Identities=35%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .||+||||+|+||+.+|..|++. ++|+|+|+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            48999999999999999999986 99999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.84  E-value=3e-05  Score=60.52  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=29.2

Q ss_pred             cEEEE--CCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIV--GAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvII--GgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .|+|+  |||..|+.+|..|+++|.+|+|+|+.+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            45555  9999999999999999999999998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.71  E-value=1.4e-05  Score=64.00  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~   38 (409)
                      .+|+|||||++|+.+|..|++.+  .+|+|+|+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            48999999999999999999987  58999998774

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=3.7e-05  Score=54.07  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      ..+|+|+|.|.+|+++|..|.++|.+|+++|.+..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            458999999999999999999999999999987653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.56  E-value=2.9e-05  Score=62.30  Aligned_cols=36  Identities=25%  Similarity=0.523  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .-+|+|||||++|+-+|..|++.|.+|+|++..+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999998877654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00035  Score=54.46  Aligned_cols=51  Identities=10%  Similarity=0.026  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCC
Q 015331          106 KRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGV  160 (409)
Q Consensus       106 ~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~  160 (409)
                      .+......+...  ++.+..++++..++  ++++.+...+. .++.||.||.|.|.
T Consensus       110 ~~~~~~~~~~~~--gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         110 TGWIHRTTLLSR--GVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             THHHHHHHHHHT--TCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             hhHHHHHHHhhC--CeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCCC
Confidence            344455555444  68999999999875  44555544332 25899999999993

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.45  E-value=4.9e-05  Score=60.93  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|||+|..|+++|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=9.6e-05  Score=55.68  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.|+|+|+|..|..+|..|.++|++|+++|++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4799999999999999999999999999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.29  E-value=8.9e-05  Score=59.04  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|||||-.|..+|..|+++|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            35899999999999999999999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00013  Score=57.35  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|||+|-.|.++|..|++.|++|++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4899999999999999999999999999998875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0037  Score=46.05  Aligned_cols=35  Identities=11%  Similarity=0.393  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||||-+++-.|..|++..-+|+++-|++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            46899999999999999999999999999987764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.96  E-value=0.00049  Score=53.01  Aligned_cols=38  Identities=11%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      |+++.+|+|||+|-.|.++|+.|+..++ ++.++|.++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            5678899999999999999999999886 7999997764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00037  Score=55.96  Aligned_cols=34  Identities=15%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|.-|...|..++++|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4899999999999999999999999999998874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0058  Score=44.94  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC   83 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~   83 (409)
                      ..+|+|||||-+.+-.|..|++..-+|+|+-|.+..+..                                         
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~-----------------------------------------   68 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-----------------------------------------   68 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC-----------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccc-----------------------------------------
Confidence            468999999999999999999998899999877643211                                         


Q ss_pred             cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEcC---CC--EEecCEEEEc
Q 015331           84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLAD---GA--VFKTKVLIGC  157 (409)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~~---g~--~~~ad~vV~A  157 (409)
                                              ..+.+.+. ..+++++++++++.++.-+++.++ +++.+   |+  ++.+|-|+.+
T Consensus        69 ------------------------~~~~~~~~-~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~  123 (126)
T d1fl2a2          69 ------------------------QVLQDKLR-SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQ  123 (126)
T ss_dssp             ------------------------HHHHHHHH-TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ------------------------cccccccc-cccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEE
Confidence                                    00111121 234688999999999988755433 55433   33  5788888887


Q ss_pred             CC
Q 015331          158 DG  159 (409)
Q Consensus       158 dG  159 (409)
                      =|
T Consensus       124 IG  125 (126)
T d1fl2a2         124 IG  125 (126)
T ss_dssp             SC
T ss_pred             eC
Confidence            66

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.94  E-value=0.00032  Score=56.95  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|-.|+.+|..|+++|++|+.+|.+..
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            3699999999999999999999999999998753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.92  E-value=0.00046  Score=52.59  Aligned_cols=37  Identities=24%  Similarity=0.546  Sum_probs=33.4

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      |.++.+|.|||+|-.|.++|+.|+.+|.  ++.++|++.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            6678899999999999999999999884  799999765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.00047  Score=51.81  Aligned_cols=33  Identities=27%  Similarity=0.489  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.80  E-value=0.00077  Score=51.92  Aligned_cols=36  Identities=19%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|+|||+|.+|+.++..+.+.|.+|.++|.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            357999999999999999999999999999997653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.75  E-value=0.00039  Score=55.67  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +...+|+|||||--|.++|..|++.|++|.++.|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            3345899999999999999999999999999998753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.74  E-value=0.00093  Score=52.23  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|+|||||.+|+.+|....+.|..|.++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            356999999999999999999999999999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.72  E-value=0.00048  Score=55.00  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+|||+|..|...|..++++|++|+++|+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.68  E-value=0.00087  Score=52.29  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||.|..|.+.|..|+++|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            379999999999999999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.39  E-value=0.0015  Score=51.70  Aligned_cols=33  Identities=24%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|.-|.++|..|++.|++|.++.|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            489999999999999999999999999997643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.26  E-value=0.0025  Score=46.08  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +..+|+|||||.+|..-|..|.+.|.+|+|+....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            35689999999999999999999999999998554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.11  E-value=0.0033  Score=48.06  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVG-AGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .+|+||| .|.-|.+.|..|+++|++|.++|+...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            5899999 699999999999999999999998763

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.87  E-value=0.0025  Score=51.17  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|||.|-.||.+|..|+ +|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            37999999999999999887 5999999997764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0027  Score=48.53  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES   35 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~   35 (409)
                      ...|+|||||..|+.-|..|.+.|.+|+|+..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            46899999999999999999999999999953

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.81  E-value=0.0055  Score=46.80  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCcc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESL   39 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~   39 (409)
                      .+|+|||||-+|+=+|..|.+.|. +|+++.|.+..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            479999999999999999999986 58899887653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.78  E-value=0.0035  Score=50.04  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             CcEEEE-CCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIV-GAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvII-GgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|+|| |+|--|.++|..|++.|++|+|..|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            369999 6699999999999999999999998763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.78  E-value=0.0057  Score=46.04  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|+.|+..+. ++.++|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            489999999999999999999886 8999997653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.75  E-value=0.0043  Score=48.33  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            4799999999999999999999999999997763

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.66  E-value=0.007  Score=45.88  Aligned_cols=36  Identities=31%  Similarity=0.596  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ...+|.|||+|-.|.++|+.|+..|+  ++.++|..+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            34689999999999999999999886  7999997653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.65  E-value=0.0042  Score=48.01  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||-|.-|...|..|.++|++|.++|+++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            3699999999999999999999999999998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.65  E-value=0.0087  Score=48.98  Aligned_cols=35  Identities=14%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|-+|.=+|..|++.+.+++++=+.+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            35899999999999999999999998888776653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.62  E-value=0.0062  Score=55.40  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEE
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAIT   47 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~   47 (409)
                      .++||||+|-|+.=..+|.+|++.|.+|+-+|+++.-+....++.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            468999999999999999999999999999999997665555544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.61  E-value=0.0082  Score=46.00  Aligned_cols=36  Identities=17%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++.+|.|||+|-.|.++|+.|...|+  ++.|+|.+..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~   56 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLED   56 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            35699999999999999999999987  7999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.60  E-value=0.0076  Score=45.35  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|.++|+.|+..|.  ++.++|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            379999999999999999999874  8999997764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.007  Score=46.89  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .-.|+|+|+|+.|++++..++..|.+|+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3479999999999999999988999999999765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0064  Score=47.26  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4799999999999999988889999999998764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.50  E-value=0.0094  Score=45.17  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ++.+|.|||+|-.|.++|+.|.+.++ ++.|+|....
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            35689999999999999999998876 7889997653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.47  E-value=0.0083  Score=46.99  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +.+|.|||-|.-|...|..|.++|++|.++||++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            35899999999999999999999999999998874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.45  E-value=0.0093  Score=44.79  Aligned_cols=34  Identities=15%  Similarity=0.392  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      .+|.|||+|-.|.++|+.|..++.  ++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            489999999999999999999886  7999997764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0089  Score=46.54  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|. +|+++|+++.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            479999999999999999999998 7999997763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.37  E-value=0.0088  Score=46.90  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||-|.-|...|..|.++|++|.++|+++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5799999999999999999999999999998753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.37  E-value=0.0098  Score=44.68  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .+|.|||+|-.|.++|+.|..+|+  ++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            589999999999999999999987  799999665

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.37  E-value=0.0072  Score=45.56  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=29.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|.|||| |-.|.++|+.|+.+|.  ++.|+|....
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            37999996 9999999999999985  8999997653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0095  Score=45.58  Aligned_cols=34  Identities=18%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +.+|.|||+|-.|.++|+.|...|+  ++.|+|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4589999999999999999999986  799999775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.33  E-value=0.0089  Score=44.89  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~   38 (409)
                      ++|.|||+|-.|.++|+.|+..|.  ++.++|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            489999999999999999998875  6999997653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.26  E-value=0.0086  Score=46.17  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|.|||-|.-|...|..|.++|++|.++|+++.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            699999999999999999999999999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.014  Score=41.65  Aligned_cols=35  Identities=17%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .++|.|+|||--|-++|....+.|++|.++|.++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35899999999999999999999999999998765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.20  E-value=0.011  Score=43.62  Aligned_cols=37  Identities=14%  Similarity=0.460  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR   40 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~   40 (409)
                      ..+|+|||||-+.+-.|..|++.--+|+|+-|.+.++
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            5699999999999999999999999999999887654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.09  E-value=0.012  Score=44.43  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      .+|.|||+|-.|.++|+.|..+|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            479999999999999999999885  799999765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.06  E-value=0.013  Score=45.44  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|.|||.|.-|.+.|..|.+.|+  +|..+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            69999999999999999999997  566678765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.05  E-value=0.011  Score=44.95  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++|.|||.|..|...|..|.++|++|+++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            3799999999999999999999999999987664

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.012  Score=44.00  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      ++|.|||+|-.|.++|+.|+.++.  ++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            489999999999999999998875  799999765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.01  E-value=0.017  Score=40.92  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+|.+|.=.|..|++...+|+++-+.+.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            46899999999999999999998888877776654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.015  Score=44.29  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -|+|+|.|..|..++..|.++|.+|+|+|.+++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            499999999999999999999999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.95  E-value=0.01  Score=46.72  Aligned_cols=34  Identities=32%  Similarity=0.487  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|+.++..++..|. +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            478999999999999999999997 7999997653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.018  Score=46.16  Aligned_cols=37  Identities=38%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+. .+|+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         1 m~~-kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCC-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            543 47999996 99999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.016  Score=44.85  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|.++++++.++.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4799999999999999999889999999997653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.65  E-value=0.014  Score=43.80  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGI--RSLVLESSE   37 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~--~V~v~E~~~   37 (409)
                      +|+|||| |-.|.++|+.|+..|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999886  688899654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.54  E-value=0.015  Score=45.39  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      -.|+|+|+|+.|++++..++..|. +|+++|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            479999999999999999999997 688999765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.022  Score=44.10  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..+|+|+|+|=++-++++.|.+.|.+|.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4689999999999999999999999999998775

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.033  Score=39.75  Aligned_cols=36  Identities=25%  Similarity=0.500  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGI-----------AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~-----------aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...+|+|||+||           ++..++..|++.|++++++.-++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            456899999996           688999999999999999998875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.019  Score=37.72  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|+|||=-|-+++....+.|++|.+++.++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            3799999999999999999999999999997764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.18  E-value=0.026  Score=43.95  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      -.|+|+|+|+.|++++..++..|. +|++.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            479999999999999999999998 5767786653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.16  E-value=0.025  Score=44.05  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|+.|+++...++..|. +|+++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            59999999999999999999995 7999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.08  E-value=0.019  Score=44.32  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -.|+|+|+|+.|++++..++..|.+|++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            479999999999999999999999999998665

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.05  E-value=0.013  Score=44.73  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=24.7

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcC
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLG   27 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g   27 (409)
                      |+++++|.|||| |..|.++|+.|+..+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            788889999997 999999999999865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.96  E-value=0.031  Score=48.98  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            1 MEEDEDIVIVG-AGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         1 M~~~~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |++.++|+|.| .|..|..++..|.++|++|+++++...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            77889999998 699999999999999999999987643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.93  E-value=0.03  Score=43.19  Aligned_cols=35  Identities=11%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +..+|+|+|+|=++-++++.|.+.|. ++.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35689999999999999999999997 799998765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.89  E-value=0.034  Score=44.09  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      .-+|+|+|+|+.|++++..++..|. +|+++|.++
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3479999999999999999988876 788888665

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.73  E-value=0.027  Score=42.71  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|.|||+|--|.+.|..|.++|+++++++|+.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            379999999999999999999999999999775

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.53  E-value=0.035  Score=47.21  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ++.+|+|+|| |..|..++..|.++|++|+++.|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            5678999997 99999999999999999999988654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.052  Score=39.20  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             CCcEEEECCCH-----------HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGI-----------AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~-----------aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|||+||           ++..++..|++.|++++++.-++.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            46899999997           688999999999999999998875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.48  E-value=0.034  Score=42.10  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~   38 (409)
                      ++|.|||+|--|.+.|..|.++| ++|.+++|+++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            37999999999999999988877 89999998763

>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.23  E-value=0.15  Score=36.06  Aligned_cols=87  Identities=18%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCC------e-EEEEEEEcCC---CCCCCCCCChhHHHHHHH
Q 015331          175 FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQ------T-VYWFFNWCPS---NQDKELEGNPDKTKQFVL  244 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  244 (409)
                      +.|..++++.+..+.-...........+++.++..+|++++      + +.|+.....+   ............-+++++
T Consensus         2 ~~G~~aWRg~v~~~~~~~g~s~v~~~~g~~~~~V~YPi~~~~~~~G~~liN~Va~v~~~~~~~~~~~e~W~~~g~~~el~   81 (111)
T d3c96a2           2 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVL   81 (111)
T ss_dssp             EEEEEEEEEEEEESCCTTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHH
T ss_pred             ccCEEEEeeeEEcCCCCCCCCEEEEecCCCceEEEEecCCCCCCCcceeEEEEEEEecccccCCCCCCCcccccCHHHHH
Confidence            56788999988765432222223333456788999999664      3 3444443211   111111111222257788


Q ss_pred             HHhcCCCHH---HHHHHHcC
Q 015331          245 SKCHDLPEQ---VKAIVENT  261 (409)
Q Consensus       245 ~~~~~~~~~---~~~~~~~~  261 (409)
                      +.|.+|++.   +..+++.+
T Consensus        82 ~~F~~W~~~~~di~~LI~~~  101 (111)
T d3c96a2          82 PFFADWDLGWFDIRDLLTRN  101 (111)
T ss_dssp             HHHTTCCBTTBCHHHHHHTC
T ss_pred             HHHcCCCCchhhHHHHHHhC
Confidence            888899875   77888876

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.041  Score=45.43  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3689999999999999999999998 788998654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.08  E-value=0.053  Score=40.38  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCC--ceEEEeCC
Q 015331            5 EDIVIVG-AGIAGLTTSLALHRLGI--RSLVLESS   36 (409)
Q Consensus         5 ~dVvIIG-gG~aGl~~A~~L~~~g~--~V~v~E~~   36 (409)
                      .+|.||| +|-.|.++|+.|..++.  ++.++|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3799999 69999999999999886  68888853

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.00  E-value=0.049  Score=42.24  Aligned_cols=33  Identities=15%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|+.|++++..++..|. +|+++|.++.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            69999999999999999999996 6888887653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.00  E-value=0.047  Score=46.00  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      +.+|+|+|| |..|..++..|.++|++|.++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            568999998 999999999999999999999987653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.064  Score=40.08  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHc-C--CceEEEeCCC
Q 015331            5 EDIVIVG-AGIAGLTTSLALHRL-G--IRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIG-gG~aGl~~A~~L~~~-g--~~V~v~E~~~   37 (409)
                      ++|.||| +|-.|.++|+.|+.. +  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4899999 599999999998643 4  5899999643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.50  E-value=0.057  Score=41.82  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=27.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceE-EEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSL-VLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~-v~E~~~   37 (409)
                      -+|+|+|+|+.|++++..++..|.+++ +.|.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            479999999999999999999998655 556544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.43  E-value=0.066  Score=36.80  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             CCCCCcEEEECCCHHHHHH-HHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGIAGLTT-SLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~aGl~~-A~~L~~~g~~V~v~E~~~   37 (409)
                      |.+..+|-+||-|=+|+++ |..|.++|++|+--|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4556789999999999877 999999999999999764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.40  E-value=0.081  Score=40.22  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      +...|+|||+|-.|-.+|..|..+|. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            35689999999999999999999998 588888764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.092  Score=40.92  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      ..+|+|+|+|-+|-++++.|.+.|. +++|+.|.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3589999999999999999999987 6889998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.092  Score=39.78  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -..|+|||-|..|-.+|..|+..|.+|+++|.++
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3589999999999999999999999999999876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.82  E-value=0.1  Score=39.32  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -..++|+|-|..|--+|..|+..|.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4589999999999999999999999999999887

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.59  E-value=0.053  Score=45.31  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            357999998 9999999999999999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.58  E-value=0.1  Score=40.29  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|+.|++++..++..|. +|+++++.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            58899999999999999999876 5777887653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.29  E-value=0.13  Score=40.39  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVG-AGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|+|.| +|-.|..+|..|+++|.+|++++|+.+
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            45788888 588999999999999999999998863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.19  E-value=0.12  Score=39.74  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      -.|+|+|+|+.|++++..++..|. .|++.|+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            469999999999999999988885 566777665

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.10  E-value=0.049  Score=41.29  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHcC
Q 015331            2 EEDEDIVIVGA-GIAGLTTSLALHRLG   27 (409)
Q Consensus         2 ~~~~dVvIIGg-G~aGl~~A~~L~~~g   27 (409)
                      +++.+|+|||| |..|.++|+.|++.+
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHH
Confidence            35679999996 999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.78  E-value=0.11  Score=40.02  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|+|+|=++-++++.|.+.+.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4589999999999999999999888999998875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.70  E-value=0.1  Score=40.42  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +..+|+|+|+|-++-++++.|++.| +|.|+-|...
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhh
Confidence            3468999999999999999998877 8999988753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.68  E-value=0.11  Score=39.84  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=28.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      -.|+|+|+ |+.|+.++..++..|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            36999995 9999999999998885 888888765

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.10  E-value=0.17  Score=38.98  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=26.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC-------ceEEEeCCC
Q 015331            3 EDEDIVIVGA-GIAGLTTSLALHRLGI-------RSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGg-G~aGl~~A~~L~~~g~-------~V~v~E~~~   37 (409)
                      +..+|+|+|| |..|.++|+.|++...       ...++|...
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            4568999996 9999999999998532       455566443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.94  E-value=0.22  Score=38.30  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .|+|+|+|..|++++..++..|. +|++++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            59999999999999999999985 7888887664

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.76  E-value=0.2  Score=40.56  Aligned_cols=47  Identities=17%  Similarity=0.019  Sum_probs=34.5

Q ss_pred             HHHHHHhhC--CCCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEE
Q 015331          110 LMEALEREL--PSGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIG  156 (409)
Q Consensus       110 l~~~l~~~~--~~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~  156 (409)
                      +.+.|.+.+  .|++|++|++|++|..++  +.+++.+.+|++++||.||.
T Consensus       238 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         238 LPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence            444444433  278999999999997754  45665667888999999884

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.66  E-value=0.22  Score=43.01  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            3 EDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         3 ~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++..|+|+|| |..|..++..|.++|++|.++-|++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5679999997 9999999999999999999998765

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.65  E-value=0.21  Score=38.66  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||.|..|-..|..|...|.+|..+++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            35799999999999999999999999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.49  E-value=0.23  Score=38.06  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~   37 (409)
                      -.|+|+|+|..|++++..++..|.+ |++.+.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            3689999999999999999999964 55666544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.10  E-value=0.075  Score=38.63  Aligned_cols=37  Identities=14%  Similarity=0.040  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceE-EEeCCCcc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHR-LGIRSL-VLESSESL   39 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~-v~E~~~~~   39 (409)
                      +++.|+|+|||-+|.+++..+.+ .+++++ .||-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            45789999999999999887754 466644 66866643

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.10  E-value=0.25  Score=37.78  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -.|+|.|| |+.|+++...++..|.+|+.+++++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            35788896 9999999998888999999988665

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.25  Score=37.84  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      -.|+|+|| |+.|+++...++..|.+|+++..++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccc
Confidence            36999996 9999999888888999999888543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.70  E-value=0.3  Score=42.03  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVG-AGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..+|+|.| .|..|..++..|.++|++|.++++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46899999 579999999999999999999998653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.15  E-value=0.37  Score=39.38  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|.|| +-.|.++|..|++.|.+|.+.+++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455565 44699999999999999999998753

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.08  E-value=0.34  Score=40.15  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=30.2

Q ss_pred             CCCCcEEEECCC---HHHHHHHHHHHHcCCceEEEeCCC
Q 015331            2 EEDEDIVIVGAG---IAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         2 ~~~~dVvIIGgG---~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+...++|.||+   =.|.++|..|+++|.+|++.+++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            455678999963   369999999999999999999875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.33  E-value=0.23  Score=35.93  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|+|.|..|..++..|.  |.+|.++|.++.
T Consensus         3 ivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           3 VVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             EEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            899999999999999995  557888888765

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.31  E-value=0.45  Score=37.86  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331            3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~   38 (409)
                      .+.+|+|.|+|-+|+..|..|...+. ++.++|+..-
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            35789999999999999999988876 6888887653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=0.35  Score=41.43  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      +|+|+|| |..|..++..|.+.|++|+++++..
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6899986 7999999999999999999998644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.23  E-value=0.48  Score=39.70  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=26.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            6 DIVIVG-AGIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         6 dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .++|.| +|=.|.++|..|++.|.+|++.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            455555 45669999999999999999999875

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.97  E-value=0.31  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             cEEEECCCHH-HHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGAGIA-GLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGgG~a-Gl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|.||+=. |.++|..|+++|++|.+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            6899988644 99999999999999999998765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.84  E-value=0.29  Score=43.50  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3589999999999999999999998 899999765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.48  E-value=0.51  Score=37.00  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||.|-.|..+|..|+-.|.+|..+|+...
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccc
Confidence            5799999999999999999999999999998654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.84  E-value=0.38  Score=39.56  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             CCCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |.+...++|.||+- .|.++|..|++.|.+|.+.++++
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44454556666654 58999999999999999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.84  E-value=0.45  Score=38.20  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--------------------CC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRL--------------------GI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~--------------------g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-.++=+|..|.+.                    |. +|.++.|+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            5899999999999999999883                    54 7999988764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=84.83  E-value=0.49  Score=36.13  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHH--HHH-c---CCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLA--LHR-L---GIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~--L~~-~---g~~V~v~E~~~~   38 (409)
                      .++|+|||||-.|.++++.  |.+ .   +.++.++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            5799999999999776553  332 1   458999998753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=84.80  E-value=0.61  Score=36.47  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||-|-.|..+|..|+..|.+|..+++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            35899999999999999999999999999997654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.63  E-value=0.48  Score=38.94  Aligned_cols=37  Identities=8%  Similarity=0.145  Sum_probs=29.9

Q ss_pred             CCCCCcEEEECC-CH--HHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGA-GI--AGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGg-G~--aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |.+...|+|.|| |-  .|.++|..|++.|.+|++.+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            345668899984 43  58999999999999999988765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.51  E-value=0.5  Score=37.62  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             CcEEEECCCHHHHHHHHHHH--------------------HcCC-ceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALH--------------------RLGI-RSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~--------------------~~g~-~V~v~E~~~~   38 (409)
                      .+|+|||+|-+++=+|..|.                    +.|. +|+++-|+..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            58999999999999999887                    4565 6889887764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.43  E-value=0.66  Score=36.37  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ..+|+|-|-|=+|..+|..|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            357999999999999999999999999998854

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=1.1  Score=28.88  Aligned_cols=34  Identities=38%  Similarity=0.621  Sum_probs=27.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...|+|.|| |-+|.++...++..|.+|+..-+++
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence            346888887 7888888887788899999887655

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.39  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=28.3

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|.||+= .|.++|..|+++|.+|.+..|+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4578888875 49999999999999999999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.61  Score=38.22  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=28.2

Q ss_pred             CCcEEEECCCHH-HHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAGIA-GLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~a-Gl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..-|+|.||+-. |.++|..|++.|.+|.+.+++.
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345888887644 9999999999999999999765

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=83.54  E-value=0.66  Score=36.12  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|.|||.|-.|-.+|..|+..|.+|..+++...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccc
Confidence            4799999999999999999999999999998654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.18  E-value=0.59  Score=37.98  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             EEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            7 IVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         7 VvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      |+|.||+- .|..+|..|+++|.+|.+.+++.+
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45557776 499999999999999999998763

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.10  E-value=0.69  Score=37.26  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|.||+= .|.++|..|+++|++|.++++...
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5789999854 699999999999999999988654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=0.66  Score=37.85  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             CCCcEEEECCCH---HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            3 EDEDIVIVGAGI---AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         3 ~~~dVvIIGgG~---aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +...|+|.||+=   .|.++|..|++.|.+|.+..+++.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            455788888743   488999999999999999998753

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.25  E-value=0.82  Score=35.38  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||.|-.|...|..|+..|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            45899999999999999999999999999998653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.21  E-value=0.79  Score=36.78  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGIRSLVLESSESL   39 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~~   39 (409)
                      .++|-|| +=.|.++|..|+++|.+|.+.+++.+.
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            4666676 455999999999999999999987653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.13  E-value=0.68  Score=37.78  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             CCcEEEECCC---HHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAG---IAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG---~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...++|.||+   =.|.++|..|++.|.+|.+.+++..
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            3468888863   2599999999999999999887653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.98  E-value=0.62  Score=38.14  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=28.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCC
Q 015331            4 DEDIVIVGAG-IAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG-~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ...++|.||+ =.|.++|..|++.|.+|.+.+++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3467777875 449999999999999999999864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=0.78  Score=39.15  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=30.1

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            1 MEEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      |+  .+|+|.|| |..|..++..|.+.|++|+++|+..
T Consensus         1 M~--kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           1 MA--EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             CC--SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CC--CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            55  37999885 8999999999999999999999643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.78  E-value=0.75  Score=37.29  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      .-++|.||+- .|.++|..|++.|.+|.+.+++..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3456777765 489999999999999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.74  E-value=0.66  Score=34.19  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcC---CceEEEe
Q 015331            3 EDEDIVIVGA-GIAGLTTSLALHRLG---IRSLVLE   34 (409)
Q Consensus         3 ~~~dVvIIGg-G~aGl~~A~~L~~~g---~~V~v~E   34 (409)
                      ++++|+|||| |.+|.-+...|.+++   .++..+-
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~   36 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA   36 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe
Confidence            4689999999 999999999998764   3555553

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.70  E-value=0.75  Score=34.83  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS   36 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~   36 (409)
                      ...|+|||-|.-|-+=|+-|+..|++|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            468999999999999999999999999985443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.49  E-value=0.82  Score=38.46  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      +|+|.|| |..|..++..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6888887 89999999999999999999998753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.79  Score=38.58  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      .+|+|.|| |..|..++..|.++|++|+.+++..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            57899986 7899999999999999999998643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.25  E-value=1.1  Score=34.69  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...|.|||.|..|-.+|..|...|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            35899999999999999999999999999997654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.24  E-value=0.65  Score=36.97  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=26.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCceEEEe
Q 015331            4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLE   34 (409)
Q Consensus         4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E   34 (409)
                      ...|+|.|| |..|..++..|.++|++|.|+.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            358999995 9999999999999998877654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.22  E-value=1.3  Score=35.56  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSESLRV   41 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~~~~   41 (409)
                      ..++|.||+- .|.++|..|++.|.+|.+.+|+.....
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            4677777764 699999999999999999999876443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.08  E-value=0.93  Score=37.46  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAG-IAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG-~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..|+|-||+ =.|.++|..|++.|.+|.+.+|+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            467777874 5599999999999999999998753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.99  Score=36.51  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=27.7

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ..++|.||+- .|.++|..|++.|.+|.+.+|+.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4677778764 48999999999999999999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.00  E-value=1.1  Score=29.70  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHH-HHHHHHHHcCCceEEEeCCC
Q 015331            5 EDIVIVGAGIAGL-TTSLALHRLGIRSLVLESSE   37 (409)
Q Consensus         5 ~dVvIIGgG~aGl-~~A~~L~~~g~~V~v~E~~~   37 (409)
                      ++|=+||=|=+|+ ++|..|.++|++|.--|+..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5788999888888 45999999999999999664

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.69  E-value=0.93  Score=36.39  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ...++|.||+- .|.++|..|++.|.+|.+.+|+.+
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45788999754 599999999999999999998753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.52  E-value=0.71  Score=37.83  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331            5 EDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         5 ~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      ..++|.||+- .|.++|..|++.|.+|++.+++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4567778765 599999999999999999998864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.42  E-value=1.1  Score=36.34  Aligned_cols=35  Identities=14%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCc
Q 015331            4 DEDIVIVGAG-IAGLTTSLALHRLGIRSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG-~aGl~~A~~L~~~g~~V~v~E~~~~   38 (409)
                      -..++|.||+ =.|.++|..|++.|.+|.+.+++.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3456777754 4489999999999999999998764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=0.96  Score=38.44  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331            6 DIVIVGA-GIAGLTTSLALHRLG-IRSLVLESSE   37 (409)
Q Consensus         6 dVvIIGg-G~aGl~~A~~L~~~g-~~V~v~E~~~   37 (409)
                      +|+|.|| |..|..++..|.++| ++|..+|+..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            6999987 889999999999988 5899998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=0.53  Score=39.17  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CC-------ceEEEeCCCc
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRL----GI-------RSLVLESSES   38 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~----g~-------~V~v~E~~~~   38 (409)
                      +.+|||.|+|-||..+|..|...    |.       ++.++|++.-
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            46899999999999999997654    32       4888887653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.07  E-value=0.62  Score=42.60  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331            4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE   37 (409)
Q Consensus         4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~   37 (409)
                      ...|+|||+|..|.-+|..|+..|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            3689999999999999999999998 799998654