Citrus Sinensis ID: 015336

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MEKPTAEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
cccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccccccccccccccccEEcccEEcccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccccHHHHHHHHHHHccccccccEEEEEcccccccccccccHHHHcccccEEEEEc
ccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEHHHccccccccccccccccccccEEEcccccccEEccccccccHHHHHHHHHHcccccccccccccccccccccEEccccccccccccccccEEEEEEEEcccEEEccccccccccHHHHHHHHHHHHcccccHHHHccccccEEEEEEEccccccccccccccccccccccEccccccccccccccccccccccEcccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHccccEEEEEEc
MEKPTAEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDnaaaataspeasqsvatlpavnspslsnspstspsaslsrspsrsrspspaaardpyelrsrsrpgkkedkkaatgtsrggirtladlnrtppggadsdddddepqqyytggeksgmlvqdptkgnqvDEIFNQARQsaverpdlrasssskaftgtarllsgetvssapapppenvshnitfwrngftvddgplrgmddpanasfLEVSIMrsecprelepadkktRVHVELINKreedyseppkrrsafqgvgrtlggsdspasaalntapspssglvvdatlpttsvQLRLADGTRMVARFNHHHTIRDIHRfidasrpgsarnyqlqamgfppkqltdLDQTVEQAGIANSVVIQKL
mekptaeansslinSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVnspslsnspstspsaslsrspsrsrspspaaardpyelrsrsrpgkkedkkaatgtsrggirtladlnrtppggadsdddddePQQYYtggeksgmlvQDPTKGNQVDEIFNQARqsaverpdlrasssskaFTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRsecprelepadkktrvhVELInkreedyseppkrrsAFQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQagiansvviqkl
MEKPTAEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNaaaataspeasqsVATLPAVnspslsnspstspsaslsrspsrsrspspaaarDPYELRSRSRPGKKEDKKAATGTSRGGIRTLADLNRTPPGGAdsdddddEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
*************NSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN**********************************************************************************************************************************************************************************NITFWRNGFTVDD***************************************************************************************VVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDA******************************************
***************FVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA******************************************************ELRSRSRPGKKE*************************************************************************************************************HNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSE****************ELINKR*************************************************TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
*********SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA***************************************************************************RGGIRTLADLNRTP************PQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQ****************FTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKR*************FQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
*********SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN*******************************************************************************************************PQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQS***************************VSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQ***************************VVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
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MEKPTAEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q7Y175421 UBA and UBX domain-contai yes no 0.973 0.942 0.569 1e-118
Q54BQ5415 NSFL1 cofactor p47 homolo yes no 0.906 0.891 0.342 1e-44
Q5ZK10369 NSFL1 cofactor p47 OS=Gal yes no 0.848 0.937 0.289 1e-36
Q9CZ44370 NSFL1 cofactor p47 OS=Mus yes no 0.855 0.943 0.296 1e-36
O35987370 NSFL1 cofactor p47 OS=Rat yes no 0.855 0.943 0.296 2e-36
Q0KL01331 UBX domain-containing pro yes no 0.625 0.770 0.356 3e-36
Q5RBG3370 NSFL1 cofactor p47 OS=Pon yes no 0.622 0.686 0.353 4e-36
Q9UNZ2370 NSFL1 cofactor p47 OS=Hom yes no 0.622 0.686 0.353 4e-36
Q3SZC4370 NSFL1 cofactor p47 OS=Bos no no 0.622 0.686 0.353 2e-35
P0C627331 UBX domain-containing pro no no 0.625 0.770 0.352 4e-35
>sp|Q7Y175|UBAX1_ARATH UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1 Back     alignment and function desciption
 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/423 (56%), Positives = 298/423 (70%), Gaps = 26/423 (6%)

Query: 7   EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATA---SPEASQSVA 63
           E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN AAA A           +
Sbjct: 4   ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSS 63

Query: 64  TLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATG 123
           T+    SPS S+SP  +PS +         +   + A   Y LRSR   G+ ++ +  +G
Sbjct: 64  TIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAP-YGLRSRGGAGENKETENPSG 122

Query: 124 --TSR-----GGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVD 176
             +SR     G IRT ADLNR+P  G  SD D  E  +YYTGG+KSGM+VQDP K   VD
Sbjct: 123 IRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVD 180

Query: 177 EIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN----VSHNITFWR 232
           E+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS+P    +     + H ITFW 
Sbjct: 181 ELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWL 240

Query: 233 NGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPP 292
           NGFTV+DGPLRG  DP NA+F+  SI RSECP ELEPADKK  VHV+L+ +R E+++EPP
Sbjct: 241 NGFTVNDGPLRGFSDPENAAFMN-SISRSECPSELEPADKKIPVHVDLV-RRGENFTEPP 298

Query: 293 KRRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSSGLVVDATLPTTSVQLRLADGT 345
           K ++ FQGVGRTLG S S +S+A       +N AP+PS GLVVD   PTTS+QLRLADGT
Sbjct: 299 KPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGT 358

Query: 346 RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVI 405
           R+V+RFN+HHT+RD+  FIDASRPG ++ YQL  MGFPPKQLT+LDQT+EQAGIAN+VVI
Sbjct: 359 RLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVI 418

Query: 406 QKL 408
           QK 
Sbjct: 419 QKF 421

Arabidopsis thaliana (taxid: 3702)
>sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1 Back     alignment and function description
>sp|Q5ZK10|NSF1C_CHICK NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1 Back     alignment and function description
>sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1 Back     alignment and function description
>sp|O35987|NSF1C_RAT NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1 Back     alignment and function description
>sp|Q0KL01|UBX2B_MOUSE UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2 Back     alignment and function description
>sp|Q5RBG3|NSF1C_PONAB NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1 Back     alignment and function description
>sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2 Back     alignment and function description
>sp|Q3SZC4|NSF1C_BOVIN NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1 Back     alignment and function description
>sp|P0C627|UBX2B_RAT UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
357493289422 UBA and UBX domain-containing protein [M 0.931 0.900 0.586 1e-121
13123657405 phosphatase-like protein Mtc923 [Medicag 0.931 0.938 0.586 1e-120
18414442421 UBA and UBX domain-containing protein [A 0.973 0.942 0.569 1e-116
118482610429 unknown [Populus trichocarpa] 0.948 0.902 0.626 1e-115
15292665421 putative phosphatase [Arabidopsis thalia 0.973 0.942 0.567 1e-115
356501288408 PREDICTED: UBA and UBX domain-containing 0.958 0.958 0.603 1e-113
297804714 948 hypothetical protein ARALYDRAFT_329973 [ 0.960 0.413 0.574 1e-113
255645588408 unknown [Glycine max] 0.958 0.958 0.600 1e-112
2244898 969 phosphatase like protein [Arabidopsis th 0.963 0.405 0.579 1e-112
255568695426 UBX domain-containing protein, putative 0.980 0.938 0.579 1e-112
>gi|357493289|ref|XP_003616933.1| UBA and UBX domain-containing protein [Medicago truncatula] gi|355518268|gb|AES99891.1| UBA and UBX domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/423 (58%), Positives = 304/423 (71%), Gaps = 43/423 (10%)

Query: 3   KPTAEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSV 62
           KP++  +++LINSF+EITSSTK EALFFLESH ++LDAAVS+FLDN              
Sbjct: 24  KPSSSDSTALINSFIEITSSTKQEALFFLESHNFDLDAAVSSFLDNDT------------ 71

Query: 63  ATLPAVNSPSLSNSPSTSPSASLS-----RSPSRSRSPSPAAARDPYELRSRSRPGKKED 117
            TLP  ++ +L  + + SPS SLS          S+SPS + +R PYELRSR   GKK  
Sbjct: 72  -TLPLNDTATLPQNDTVSPSDSLSPDFHPDDSPPSQSPSQSPSRAPYELRSRRSIGKK-- 128

Query: 118 KKAATGTSRGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKG-NQVD 176
             + +G+ + GIRTL D+ R      DSD + DEPQ+YY GG+KSGMLVQDPT+G N VD
Sbjct: 129 --SGSGSRQSGIRTLRDVKR----DQDSDSESDEPQEYYAGGQKSGMLVQDPTRGGNSVD 182

Query: 177 EIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPENVSHNITFWRNGFT 236
           +IF+QA+Q AVE P    SS S++FTGTARLLSGE V SAP P  E+V+H +TFWRNGF+
Sbjct: 183 DIFDQAKQVAVE-PPAENSSRSRSFTGTARLLSGEAVPSAPQPV-ESVTHVVTFWRNGFS 240

Query: 237 VDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPK-RR 295
           V+DGPLR ++DP NA FLE SI +SECP+ELEP D++T V + L  +R+E+Y EP K R 
Sbjct: 241 VNDGPLRRLEDPQNAEFLE-SIKKSECPKELEPTDRRTSVRLSL-TRRDENYPEPVKPRN 298

Query: 296 SAFQGVGRTLGGSDSPASAALN-----------TAPSPSSGLVVDATLPTTSVQLRLADG 344
           +AF+GVGRTLG S S   AA             TAP+P+ GLVVD + P TS+QLRL+DG
Sbjct: 299 TAFRGVGRTLGDSSSNGEAASGPSQTTADASPLTAPAPAMGLVVDDSKPVTSIQLRLSDG 358

Query: 345 TRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 404
           TRMV+RFNHHH IRDI  FIDASRPG  R+YQLQ MGFPPKQLTDLDQT+EQAGIANSVV
Sbjct: 359 TRMVSRFNHHHAIRDIRAFIDASRPGGTRSYQLQTMGFPPKQLTDLDQTIEQAGIANSVV 418

Query: 405 IQK 407
           IQK
Sbjct: 419 IQK 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|13123657|gb|AAK12935.1|AF323103_1 phosphatase-like protein Mtc923 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18414442|ref|NP_567463.1| UBA and UBX domain-containing protein [Arabidopsis thaliana] gi|75146011|sp|Q7Y175.1|UBAX1_ARATH RecName: Full=UBA and UBX domain-containing protein At4g15410 gi|31249692|gb|AAP46195.1| putative phosphatase [Arabidopsis thaliana] gi|332658197|gb|AEE83597.1| UBA and UBX domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|118482610|gb|ABK93225.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15292665|gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356501288|ref|XP_003519457.1| PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Glycine max] Back     alignment and taxonomy information
>gi|297804714|ref|XP_002870241.1| hypothetical protein ARALYDRAFT_329973 [Arabidopsis lyrata subsp. lyrata] gi|297316077|gb|EFH46500.1| hypothetical protein ARALYDRAFT_329973 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255645588|gb|ACU23288.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|2244898|emb|CAB10320.1| phosphatase like protein [Arabidopsis thaliana] gi|7268288|emb|CAB78583.1| phosphatase like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255568695|ref|XP_002525319.1| UBX domain-containing protein, putative [Ricinus communis] gi|223535378|gb|EEF37052.1| UBX domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2130110421 PUX5 "serine/threonine protein 0.737 0.714 0.597 1.1e-110
TAIR|locus:2137291303 PUX4 "plant UBX domain contain 0.703 0.947 0.622 1.3e-91
TAIR|locus:2132001367 PUX3 "AT4G22150" [Arabidopsis 0.700 0.779 0.615 3.8e-85
TAIR|locus:2089920435 AT3G21660 "AT3G21660" [Arabido 0.257 0.241 0.588 1.6e-45
ZFIN|ZDB-GENE-041114-160372 nsfl1c "NSFL1 (p97) cofactor ( 0.526 0.577 0.363 8.7e-42
UNIPROTKB|Q9UNZ2370 NSFL1C "NSFL1 cofactor p47" [H 0.438 0.483 0.404 5.1e-39
MGI|MGI:3042273370 Nsfl1c "NSFL1 (p97) cofactor ( 0.438 0.483 0.409 6.5e-39
RGD|619952370 Nsfl1c "NSFL1 (p97) cofactor ( 0.438 0.483 0.409 6.5e-39
UNIPROTKB|Q3SZC4370 NSFL1C "NSFL1 cofactor p47" [B 0.438 0.483 0.404 1.1e-38
UNIPROTKB|Q5ZK10369 NSFL1C "NSFL1 cofactor p47" [G 0.517 0.571 0.375 1.3e-38
TAIR|locus:2130110 PUX5 "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 939 (335.6 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
 Identities = 193/323 (59%), Positives = 238/323 (73%)

Query:   103 PYELRSRSRPGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQY 155
             PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +Y
Sbjct:   102 PYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEY 159

Query:   156 YTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSS 215
             YTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS
Sbjct:   160 YTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSS 219

Query:   216 APAPP----PENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPAD 271
             +P       P+ + H ITFW NGFTV+DGPLRG  DP NA+F+  SI RSECP ELEPAD
Sbjct:   220 SPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMN-SISRSECPSELEPAD 278

Query:   272 KKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSS 324
             KK  VHV+L+ +R E+++EPPK ++ FQGVGRTLG S S +S+A       +N AP+PS 
Sbjct:   279 KKIPVHVDLV-RRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSR 337

Query:   325 GLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPP 384
             GLVVD   PTTS+QLRLADGTR+V+RFN+HHT+RD+  FIDASRPG ++ YQL  MGFPP
Sbjct:   338 GLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPP 397

Query:   385 KQLTDLDQTVEQAGIANSVVIQK 407
             KQLT+LDQT+EQAGIAN+VVIQK
Sbjct:   398 KQLTELDQTIEQAGIANAVVIQK 420
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2137291 PUX4 "plant UBX domain containing protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132001 PUX3 "AT4G22150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089920 AT3G21660 "AT3G21660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-160 nsfl1c "NSFL1 (p97) cofactor (p47)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNZ2 NSFL1C "NSFL1 cofactor p47" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:3042273 Nsfl1c "NSFL1 (p97) cofactor (p47)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619952 Nsfl1c "NSFL1 (p97) cofactor (p47)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZC4 NSFL1C "NSFL1 cofactor p47" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK10 NSFL1C "NSFL1 cofactor p47" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7Y175UBAX1_ARATHNo assigned EC number0.56970.97300.9429yesno
Q54BQ5NSF1C_DICDINo assigned EC number0.34240.90680.8915yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
pfam0805975 pfam08059, SEP, SEP domain 7e-35
smart0055393 smart00553, SEP, Domain present in Saccharomyces c 9e-35
cd0177079 cd01770, p47_UBX, p47-like ubiquitin domain 8e-22
cd0176777 cd01767, UBX, UBX (ubiquitin regulatory X) domain 5e-17
pfam0078978 pfam00789, UBX, UBX domain 8e-15
smart0016677 smart00166, UBX, Domain present in ubiquitin-regul 4e-06
>gnl|CDD|219713 pfam08059, SEP, SEP domain Back     alignment and domain information 
 Score =  123 bits (311), Expect = 7e-35
 Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 228 ITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREED 287
           +T W+NGF+VDDGPLR  DDP NA FLE SI + E P EL        V V++ ++R+ED
Sbjct: 1   LTLWKNGFSVDDGPLRRYDDPENAQFLE-SINKGEAPLELLNVYPGQGVDVKVEDRRDED 59

Query: 288 YSEPPKRRSAFQGVGR 303
           Y  P K+   F G G+
Sbjct: 60  YVPPKKKYKPFSGSGQ 75

The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L. Most SEP domains are succeeded closely by a UBX domain. Length = 75
>gnl|CDD|197786 smart00553, SEP, Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47 Back     alignment and domain information
>gnl|CDD|176365 cd01770, p47_UBX, p47-like ubiquitin domain Back     alignment and domain information
>gnl|CDD|176362 cd01767, UBX, UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>gnl|CDD|216120 pfam00789, UBX, UBX domain Back     alignment and domain information
>gnl|CDD|197552 smart00166, UBX, Domain present in ubiquitin-regulatory proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG2086380 consensus Protein tyrosine phosphatase SHP1/Cofact 100.0
smart0055393 SEP Domain present in Saccharomyces cerevisiae Shp 100.0
PF0805975 SEP: SEP domain; InterPro: IPR012989 The SEP (afte 99.96
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 99.91
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 99.81
smart0016680 UBX Domain present in ubiquitin-regulatory protein 99.76
cd0177382 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i 99.74
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 99.73
cd0177180 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac 99.73
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 99.7
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 99.7
KOG1364356 consensus Predicted ubiquitin regulatory protein, 99.56
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 99.45
KOG2689290 consensus Predicted ubiquitin regulatory protein [ 99.24
KOG2507 506 consensus Ubiquitin regulatory protein UBXD2, cont 98.64
KOG1363460 consensus Predicted regulator of the ubiquitin pat 98.15
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 97.68
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 97.64
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 97.18
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 97.04
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 97.03
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 97.01
PF12090182 Spt20: Spt20 family; InterPro: IPR021950 This pres 96.87
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 96.82
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 96.72
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 96.71
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 96.65
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 96.57
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 96.56
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 96.54
PTZ0004476 ubiquitin; Provisional 96.45
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 96.36
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 96.24
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 96.19
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 96.09
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 95.97
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 95.95
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 95.94
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 95.65
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 95.57
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 95.53
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 95.42
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 95.06
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 95.03
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 95.02
TIGR00601 378 rad23 UV excision repair protein Rad23. All protei 94.79
KOG4351244 consensus Uncharacterized conserved protein [Funct 94.71
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 94.55
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 94.35
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 94.0
cd0179079 Herp_N Homocysteine-responsive endoplasmic reticul 92.97
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 92.73
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 92.53
PRK06369115 nac nascent polypeptide-associated complex protein 91.15
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 91.01
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 90.91
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 90.74
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 88.9
smart0054643 CUE Domain that may be involved in binding ubiquit 86.48
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 85.23
KOG0011 340 consensus Nucleotide excision repair factor NEF2, 84.38
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 83.59
cd01795107 USP48_C USP ubiquitin-specific protease. The USP ( 83.4
PLN02560 308 enoyl-CoA reductase 83.3
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 82.64
PF1483688 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A 82.42
cd0180177 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- 82.32
PF0881779 YukD: WXG100 protein secretion system (Wss), prote 80.38
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-79  Score=605.29  Aligned_cols=355  Identities=44%  Similarity=0.692  Sum_probs=278.2

Q ss_pred             hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccccCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 015336            7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPSLSNSPSTSPSASLS   86 (408)
Q Consensus         7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (408)
                      +...+.|++||++||.++.+|++||+.++||++.|...+|.+.......  ...             ++...+       
T Consensus         2 ~~p~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~~~~~~--~~s-------------q~~~~~-------   59 (380)
T KOG2086|consen    2 AIPLDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAFADEDLW--GSS-------------QGSSSS-------   59 (380)
T ss_pred             CCchhHHHHHhccCCCCccccccccccCCCchhhhhhhhcccccccccc--ccc-------------cccccc-------
Confidence            3456789999999999999999999999999999999999875432000  000             000000       


Q ss_pred             CCCCCCCCCCCCCCCCchhhccCCCCCCcccccccCCCCCCCccccccccCCCCCCCCCCCCCCCCCcccccCCccccee
Q 015336           87 RSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLV  166 (408)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~dl~~~~~~~~d~dd~~~~~~~~faGGekSGl~V  166 (408)
                        ......++              ....     .......++|++++|+....+  .+.++|+++.|+||||||+|||+|
T Consensus        60 --~~~~~~~s--------------~~~~-----~~~~~~~~~~~s~~d~~~~~~--~~~~sddd~~qe~~~gge~~gq~~  116 (380)
T KOG2086|consen   60 --DKEPTSPS--------------QSRT-----ALQDQVATGITSFRDLFSDRD--EELESDDDQEQEFYAGGEKSGQMV  116 (380)
T ss_pred             --cccCCCCc--------------cccc-----ccccccccCcCCHHHhccccc--cccccccchhhhhhhccccccccc
Confidence              00000000              0000     012345568999999976422  233345666679999999999777


Q ss_pred             eCCCCCC----CHHHHHHHHHHh-cccCCCccCCCCCCceeeeeeecCCCccCCCCCC------CCCCceEEEEEecCce
Q 015336          167 QDPTKGN----QVDEIFNQARQS-AVERPDLRASSSSKAFTGTARLLSGETVSSAPAP------PPENVSHNITFWRNGF  235 (408)
Q Consensus       167 ~~P~~~~----~v~~if~~A~~~-a~~~~~~~~~~~~~~F~G~G~~L~~~~~~~~~~~------~~~~~~~~it~w~nGF  235 (408)
                      ..|++++    +|++||.+|+++ |+.............|.|++.-|.|..++...+.      .++.+.|+|+||||||
T Consensus       117 v~~~~k~~~~e~v~~~~~~a~q~~a~~~~~~~~~~~~~~~~gs~~~lsg~~~~~~~q~~~~~~~~~~~v~~~l~lW~nGF  196 (380)
T KOG2086|consen  117 VEPPDKKSSEEDVDEIFGQARQMGAVEGPLAPSESSSGEFLGSGGDLSGEVVPLGTQQQQREAQPPEPVTVTLKLWKNGF  196 (380)
T ss_pred             cCCCccccHHHHHHHHHhhhcccCccccCccCccccccccccccccccCccccCCcccCcccccCCCcceeEEEEeeccc
Confidence            7777655    299999999999 6543322222345679999999988877653211      2377999999999999


Q ss_pred             eecCCCCCCCCChhhHHHHHHhhhcCCCCCccCCCCCCCcEEEEEeccccccccCCCCCCccccCcccccCCCCCCCc--
Q 015336          236 TVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPAS--  313 (408)
Q Consensus       236 ~VdDGplr~ydDP~N~~fL~~~I~~G~~P~EL~~~~~~~~V~v~v~D~~~E~Y~~p~~~~~~F~G~G~rLGs~~p~~~--  313 (408)
                      +|||||||+|+||+|++||+ +|++|+||.||+.++++++|+|+|+|||+|+|++|++.+++|+|+||+||++.|...  
T Consensus       197 svdDGplr~ydDP~N~~fL~-~I~~Ge~P~eL~~~~~~~~V~v~v~~~r~E~~~~~~~~~~pF~G~Gq~LGs~~p~~~~s  275 (380)
T KOG2086|consen  197 SVDDGPLRSYDDPANAEFLE-SIRKGEAPSELLPVDPGQEVDVKVEDHRDEDYLEPKPVFKPFSGEGQRLGSTAPGVSGS  275 (380)
T ss_pred             cccCCCcccccChhHHHHHH-HHhccCCCHHHhccccCCccceeccccccccccCCCcccCCCCCcCeecCCcCCCcccc
Confidence            99999999999999999999 999999999999999999999999999999999999899999999999999766321  


Q ss_pred             c--------cCC-CCCCCCCCcccCCCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCC
Q 015336          314 A--------ALN-TAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFP  383 (408)
Q Consensus       314 ~--------~~~-~~~~~~~~~~vd~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP  383 (408)
                      +        +.+ ....+...+.+|+.+|+|+|||||+||+|+|++||++|||.|||.||..++|.+ ..+|.|+ ++||
T Consensus       276 s~~~~~~~~p~~~~~~~~~~sl~~d~~~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~-~~FP  354 (380)
T KOG2086|consen  276 SSPPLTATVPANTQERSASSSLVIDPAEPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILM-MAFP  354 (380)
T ss_pred             CCCcccccCCccccccccccccccCCCCCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeee-ecCC
Confidence            1        011 111234568899999999999999999999999999999999999999999998 6789999 8999


Q ss_pred             CccCCCccCchhhcCCCCeeEEeeC
Q 015336          384 PKQLTDLDQTVEQAGIANSVVIQKL  408 (408)
Q Consensus       384 ~k~l~D~s~TL~eagL~navvvqk~  408 (408)
                      +|+|+|+++||++|||+|+||||||
T Consensus       355 pk~l~D~sqTle~AgL~Nsvlvqr~  379 (380)
T KOG2086|consen  355 PKPLSDDSQTLEEAGLLNSVLVQRL  379 (380)
T ss_pred             CcccCCcchhHHhccchhhhhhhhc
Confidence            9999999999999999999999997

>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47 Back     alignment and domain information
>PF08059 SEP: SEP domain; InterPro: IPR012989 The SEP (after shp1, eyc and p47) domain is an eukaryotic domain, which occurs frequently and mainly in single units Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>cd01771 Faf1_UBX Faf1 UBX domain Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] Back     alignment and domain information
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>PF12090 Spt20: Spt20 family; InterPro: IPR021950 This presumed domain is found in the Spt20 proteins from both human and yeast Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>cd01795 USP48_C USP ubiquitin-specific protease Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A Back     alignment and domain information
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 Back     alignment and domain information
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1s3s_G127 Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPL 6e-19
1i42_A89 Nmr Structure Of The Ubx Domain From P47 Length = 8 7e-16
1ss6_A102 Solution Structure Of Sep Domain From Human P47 Len 2e-11
1vaz_A88 Solution Structures Of The P47 Sep Domain Length = 3e-08
>pdb|1S3S|G Chain G, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 8/126 (6%)
Query: 290 EPPKRRSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLA 342
           +P     AF G G+ LG        + SPA  A N A + SS L+ +A  PTT++Q+RLA
Sbjct: 2   KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLA 60
Query: 343 DGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 402
           DG R+V +FNH H I DI  FI  +RP  A    +    FP K+L D +QT+++A + N+
Sbjct: 61  DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA 120
Query: 403 VVIQKL 408
           V++Q+L
Sbjct: 121 VIVQRL 126
>pdb|1I42|A Chain A, Nmr Structure Of The Ubx Domain From P47 Length = 89 Back     alignment and structure
>pdb|1SS6|A Chain A, Solution Structure Of Sep Domain From Human P47 Length = 102 Back     alignment and structure
>pdb|1VAZ|A Chain A, Solution Structures Of The P47 Sep Domain Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1ss6_A102 P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, 2e-33
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 4e-33
1vaz_A88 NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-bet 9e-27
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 2e-15
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 6e-15
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 5e-14
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 1e-11
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 5e-10
3bq3_A270 Defective in cullin neddylation protein 1; ubiquit 2e-07
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 7e-04
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1 Length = 102 Back     alignment and structure
 Score =  119 bits (301), Expect = 2e-33
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 214 SSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKK 273
           S       ++V   +  W++GF++D+G LR   DP+NA FLE SI R E P EL      
Sbjct: 2   SEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHG 60

Query: 274 TRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNT 318
            +V++++ + R+ED+ +P     AF G G+ LG   S A   L+T
Sbjct: 61  GQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG---STAPQVLST 102
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Length = 127 Back     alignment and structure
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1 Length = 88 Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Length = 84 Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Length = 109 Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Length = 124 Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Length = 46 Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109 Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 66 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
1ss6_A102 P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, 100.0
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 99.96
1vaz_A88 NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-bet 99.94
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 99.78
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 99.76
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 99.76
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 99.72
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 99.44
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 99.42
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 99.32
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 99.32
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 99.3
3bq3_A270 Defective in cullin neddylation protein 1; ubiquit 98.71
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 98.68
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 98.13
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 97.76
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 97.64
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.45
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 97.43
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 97.22
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 97.17
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 97.15
2l2d_A73 OTU domain-containing protein 7A; UBA fold, struct 97.12
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 97.12
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 97.07
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 97.04
2pjh_A80 Protein NPL4, nuclear protein localization protein 96.99
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 96.92
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 96.88
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 96.8
3v6c_B91 Ubiquitin; structural genomics, structural genomic 96.79
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 96.77
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 96.74
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 96.72
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 96.72
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 96.69
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 96.68
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 96.67
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 96.65
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 96.65
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 96.64
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 96.59
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 96.57
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 96.54
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 96.51
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 96.46
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 96.46
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 96.46
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 96.45
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 96.37
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 96.35
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 96.32
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 96.31
3m62_B106 UV excision repair protein RAD23; armadillo-like r 96.28
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 96.27
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 96.26
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 96.23
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 96.17
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 96.16
1we6_A111 Splicing factor, putative; structural genomics, ub 96.09
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 96.03
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 96.02
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 95.98
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 95.97
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 95.94
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 95.87
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 95.72
1wji_A63 Tudor domain containing protein 3; UBA domain, str 95.7
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 95.65
1jkg_B250 TAP; NTF2-like domain, transport protein; 1.90A {H 95.65
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 95.63
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 95.56
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 95.54
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 95.49
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 95.49
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 95.46
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 95.45
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 95.4
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 95.39
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 95.38
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 95.36
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 95.33
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 94.3
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 95.31
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 95.29
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 95.23
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 95.17
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 95.07
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 95.07
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 95.01
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 95.0
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 94.81
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 94.8
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 94.79
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 94.79
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 94.78
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 94.64
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 94.61
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 94.52
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 94.48
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 94.46
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 94.4
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 94.38
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 94.12
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 93.95
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 93.85
1oqy_A 368 HHR23A, UV excision repair protein RAD23 homolog A 93.79
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 93.79
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 93.56
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 93.49
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 93.47
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 93.32
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 92.99
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 92.83
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 92.08
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 92.04
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 92.02
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 91.98
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 91.93
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 91.81
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 91.73
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 91.63
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 91.41
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 91.29
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 91.23
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 91.13
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 90.77
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 90.64
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 90.62
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 90.24
2fnj_B118 Transcription elongation factor B polypeptide 2; b 89.66
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 88.97
2daj_A91 KIAA0977 protein, COBL-like 1; ubiquitin-like doma 88.43
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 88.12
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 87.72
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 87.5
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 87.31
2kj6_A97 Tubulin folding cofactor B; methods development, N 86.83
2cwb_A108 Chimera of immunoglobulin G binding protein G and 86.43
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 86.41
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 85.59
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 85.29
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 83.23
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 82.74
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 81.91
2dna_A67 Unnamed protein product; ubiquitin associated doma 81.73
3shq_A 320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 81.68
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 81.25
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 80.2
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 80.19
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1 Back     alignment and structure
Probab=100.00  E-value=3.7e-35  Score=246.46  Aligned_cols=89  Identities=37%  Similarity=0.732  Sum_probs=86.1

Q ss_pred             CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHhhhcCCCCCccCCCCCCCcEEEEEeccccccccCCCCCCccccCc
Q 015336          222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGV  301 (408)
Q Consensus       222 ~~~~~~it~w~nGF~VdDGplr~ydDP~N~~fL~~~I~~G~~P~EL~~~~~~~~V~v~v~D~~~E~Y~~p~~~~~~F~G~  301 (408)
                      +++.|+||||+|||+|||||||+|+||+|++||+ +|++|+||.||+++++++.|+|+|+||++|+|++|++++++|+|+
T Consensus        10 ~~~~~~ltlw~nGFtVdDGplR~ydDP~N~~FL~-~I~~G~~P~EL~~~~~~~~V~v~v~d~~~e~y~~p~~~~~~F~G~   88 (102)
T 1ss6_A           10 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGE   88 (102)
T ss_dssp             SCEEEEEEEESSEEEETTSCEEETTCTTTHHHHH-HHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCSS
T ss_pred             CCceEEEEEecCceEecCCCcccCCCHhHHHHHH-HHHhCCCCHHHhcccCCCeEEEEeeeccCccccCCCCcccCCccc
Confidence            6789999999999999999999999999999999 999999999999999999999999999999999998889999999


Q ss_pred             ccccCCCCCC
Q 015336          302 GRTLGGSDSP  311 (408)
Q Consensus       302 G~rLGs~~p~  311 (408)
                      ||+||+++|.
T Consensus        89 G~~LGs~~p~   98 (102)
T 1ss6_A           89 GQKLGSTAPQ   98 (102)
T ss_dssp             SSSGGGCCSS
T ss_pred             CeECCCCCCC
Confidence            9999998874
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1 Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d1ss6a_102 d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SE 1e-32
d1i42a_89 d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 9e-27
d1s3si_50 d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 5e-18
d1h8ca_82 d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human 1e-15
d1wj4a_124 d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human 3e-14
d2cr5a196 d.15.1.2 (A:8-103) UBX domain-containing protein 6 8e-14
d1v92a_46 a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA- 2e-12
d2g3qa143 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL0 0.004
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NSFL1 (p97 ATPase) cofactor p47, SEP domain
superfamily: NSFL1 (p97 ATPase) cofactor p47, SEP domain
family: NSFL1 (p97 ATPase) cofactor p47, SEP domain
domain: NSFL1 (p97 ATPase) cofactor p47, SEP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-32
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 214 SSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKK 273
           S       ++V   +  W++GF++D+G LR   DP+NA FLE SI R E P EL      
Sbjct: 2   SEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHG 60

Query: 274 TRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNT 318
            +V++++ + R+ED+ +P     AF G G+ LG   S A   L+T
Sbjct: 61  GQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG---STAPQVLST 102
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89 Back     information, alignment and structure
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46 Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Length = 43 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1ss6a_102 NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human 100.0
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.89
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 99.74
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 99.69
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 99.64
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 99.6
d1s3si_50 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.55
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 97.84
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 97.45
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 97.1
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 97.05
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 97.04
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 96.99
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 96.93
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 96.89
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 96.89
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 96.87
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 96.87
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 96.83
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 96.74
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 96.64
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 96.64
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 96.58
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 96.57
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 96.52
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 96.49
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 96.46
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 96.34
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 96.3
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 96.25
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 96.22
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 96.2
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 96.07
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.99
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 95.95
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 95.74
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 95.73
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 95.53
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 95.53
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 95.24
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 95.12
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 94.61
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 94.53
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 94.49
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 94.41
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 94.28
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 93.93
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 93.74
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 92.69
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 92.65
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 92.52
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 92.16
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 90.98
d1wf9a194 NPL4-like protein 1 {Thale cress (Arabidopsis thal 89.59
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 87.52
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 87.48
d2c9wb1103 Elongin B {Human (Homo sapiens) [TaxId: 9606]} 87.09
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 84.28
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 82.55
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 82.21
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NSFL1 (p97 ATPase) cofactor p47, SEP domain
superfamily: NSFL1 (p97 ATPase) cofactor p47, SEP domain
family: NSFL1 (p97 ATPase) cofactor p47, SEP domain
domain: NSFL1 (p97 ATPase) cofactor p47, SEP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-36  Score=248.85  Aligned_cols=89  Identities=37%  Similarity=0.732  Sum_probs=86.3

Q ss_pred             CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHhhhcCCCCCccCCCCCCCcEEEEEeccccccccCCCCCCccccCc
Q 015336          222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGV  301 (408)
Q Consensus       222 ~~~~~~it~w~nGF~VdDGplr~ydDP~N~~fL~~~I~~G~~P~EL~~~~~~~~V~v~v~D~~~E~Y~~p~~~~~~F~G~  301 (408)
                      +++.|+||||+|||+|||||||+|+||+|++||+ +|++|+||.||+++++++.|+|+|+||++|+|++|++++++|+|+
T Consensus        10 ~~v~v~l~lw~nGFtVdDGplR~yddP~N~~FL~-~I~~G~~P~EL~~~~~~~~V~v~v~D~~~e~y~~pk~~~~~F~G~   88 (102)
T d1ss6a_          10 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGE   88 (102)
T ss_dssp             SCEEEEEEEESSEEEETTSCEEETTCTTTHHHHH-HHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCSS
T ss_pred             CcceEEEEEecCceEecCCCcccCCCHhHHHHHH-HHHhccCCHHHhcccCCCeEeEEEEeccCCcccCCCCcccCcccc
Confidence            6789999999999999999999999999999999 999999999999999999999999999999999998889999999


Q ss_pred             ccccCCCCCC
Q 015336          302 GRTLGGSDSP  311 (408)
Q Consensus       302 G~rLGs~~p~  311 (408)
                      ||+|||++|.
T Consensus        89 G~~LGSp~P~   98 (102)
T d1ss6a_          89 GQKLGSTAPQ   98 (102)
T ss_dssp             SSSGGGCCSS
T ss_pred             CccCCCCCCC
Confidence            9999999884
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure