Citrus Sinensis ID: 015344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSQLQRSPRVIK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHEEEEEEcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHEcccHccc
Coil and Loop (DISEMBL)
msnintmeerpetelisipatprastpevltpsgqrsprpaskeaksstawtptsfisprflspigtpMKRVLVNMKGYLEEvghltklnpqdawlpitesrngnahYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHeavpgkryNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVcgplcssnplttVEWYLVFTSLCIVLsqlpnlnsiagLSLIGAITAVTYSTMVWVLSvsqprppnisyeplssaspaaTVFSVMNALGIIAFAFRGHNLAMEIQatmpstfkhpahvpmwrGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSqlqrsprvik
Flexible Loop (DISEMBL)
msnintmeerpetelisipatprastpevltpsgqrsprpaskeaksstawtptsfisprflspigTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKcrksqlqrsprvik
Low Complexity Region (SEG)
MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSQLQRSPRVIK
Disordered region (IsUnstruct)
****************************************************PTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSV******************AATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKC*************
Disordered Region (DISOPRED)
**************************************************************************************************TESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATM*********VPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSQLQRSPRVIK
Disordered Region (DISEMBL)
*************ELISIPATP*****************************TPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCR************
Disordered Region (DISPRO)
*************ELISIPATPRAST*E*****************************SPRFLSPIGTPMKRVLVNMKGYL********LNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSQLQRSPRVIK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNINTMEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAHNKFTIGKKKELLDVLAYVEKCRKSQLQRSPRVIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9SX98	519	Lysine histidine transpor	yes	no	0.877	0.689	0.891	0.0
Q84WE9	478	Lysine histidine transpor	no	no	0.654	0.558	0.462	1e-71
Q9LRB5	441	Lysine histidine transpor	no	no	0.664	0.614	0.454	3e-65
Q9FKS8	446	Lysine histidine transpor	no	no	0.666	0.609	0.431	1e-61
Q9SR44	441	Lysine histidine transpor	no	no	0.678	0.628	0.419	5e-59
Q9C733	453	Lysine histidine transpor	no	no	0.691	0.622	0.430	4e-58
O22719	451	Lysine histidine transpor	no	no	0.669	0.605	0.414	1e-57
Q9C6M2	440	Lysine histidine transpor	no	no	0.678	0.629	0.409	1e-56
Q9SS86	455	Lysine histidine transpor	no	no	0.664	0.595	0.406	2e-54
Q9C9J0	448	Lysine histidine transpor	no	no	0.693	0.631	0.383	2e-48

>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/360 (89%), Positives = 344/360 (95%), Gaps = 2/360 (0%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct: 1   MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 59  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct: 239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNL+
Sbjct: 299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/277 (46%), Positives = 188/277 (67%), Gaps = 10/277 (3%)

Query: 91  PQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLY 150
           P + WLPITESR GN + A FH L +G+G Q +LLP AFA LGW WG + LT+ + W+LY
Sbjct: 47  PVEEWLPITESRKGNVYTATFHLLCSGIGLQVILLPAAFAALGWVWGTIILTVGFVWKLY 106

Query: 151 TLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETM 210
           T W+LVQLHEAVPG R +RYV LA A+FG +LG  L +FP +YLS G  T L++ GG+++
Sbjct: 107 TTWLLVQLHEAVPGIRISRYVRLAIASFGVKLGKLLGIFPVMYLSGGACTILVITGGKSI 166

Query: 211 KMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMV 270
           +   QI+     ++ PLT+V+ +LVF+ + +++SQ PNLNS+ G+SLIGA   + Y T++
Sbjct: 167 QQLLQIMSDD--NTAPLTSVQCFLVFSCIAMIMSQFPNLNSLFGVSLIGAFMGIAYCTVI 224

Query: 271 WVLSV---SQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST 327
           W+L V   SQ    ++SY     A+   +   + NA+G+IA  +RG+NL +EIQ T+PS 
Sbjct: 225 WILPVASDSQRTQVSVSY-----ATMDKSFVHIFNAIGLIALVYRGNNLVLEIQGTLPSD 279

Query: 328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGN 364
            K+P+   MWR   +++  +A+C+FP+    +WAYG+
Sbjct: 280 SKNPSCKTMWRAVMISHALVAICMFPLTFAVYWAYGD 316

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/275 (45%), Positives = 179/275 (65%), Gaps = 4/275 (1%)

Query: 93  DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
           D WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  G+  + +++   LYTL
Sbjct: 20  DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTL 79

Query: 153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
           W +V++HE VPGKR +RY EL Q AFGE+LG+W+ +   + +  G     ++ GG ++K 
Sbjct: 80  WQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKK 139

Query: 213 FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272
             Q+VC P C    + T  W ++F S+  V+S LPN NSI+ +SL  A+ ++TYST+ W 
Sbjct: 140 VHQLVC-PDCKE--IRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWA 196

Query: 273 LSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332
            SV +   P++ Y P +S +    VF+ +NALG +AFA+ GHN+ +EIQAT+PST + P+
Sbjct: 197 ASVHKGVHPDVDYSPRAS-TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPS 255

Query: 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367
            VPMWRG  VAY+ +A+C FPVA  G++ +GN V 
Sbjct: 256 KVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVD 290

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  237 bits (605), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/276 (43%), Positives = 178/276 (64%), Gaps = 4/276 (1%)

Query: 93  DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
           + WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  GI  L +++   LYTL
Sbjct: 25  EDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTL 84

Query: 153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
           W +V++HE VPGKR++RY EL Q AFGE+LG+++ +   + +  G     ++ GG+++K 
Sbjct: 85  WQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKK 144

Query: 213 FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272
           F ++VC       P+    + ++F S+  VLS LPN NSI+G+SL  A+ +++YST+ W 
Sbjct: 145 FHELVCD---DCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWA 201

Query: 273 LSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332
            S S+    ++ Y    + + A TVF+  + LG +AFA+ GHN+ +EIQAT+PST + P+
Sbjct: 202 SSASKGVQEDVQYG-YKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPS 260

Query: 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST 368
             PMWRG  VAY+ +A+C FPVA+ G++ +GN V  
Sbjct: 261 KGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVED 296

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  228 bits (582), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 177/281 (62%), Gaps = 4/281 (1%)

Query: 87  TKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC 146
           TK    D WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  G+  + +++ 
Sbjct: 14  TKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWL 73

Query: 147 WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLG 206
              YTLW +VQ+HE VPGKR++RY EL Q AFGE+LG+W+ +   + +  G     ++ G
Sbjct: 74  ITFYTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTG 133

Query: 207 GETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTY 266
           G+++K    ++C        + T  W ++F S+  VL+ LPN NSI+ +SL  A+ +++Y
Sbjct: 134 GKSLKKIHDLLC---TDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSY 190

Query: 267 STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326
           ST+ W  SV +   PN+ Y   +S + +  VF+ +NALG +AFA+ GHN+ +EIQAT+PS
Sbjct: 191 STIAWATSVKKGVHPNVDYSSRASTT-SGNVFNFLNALGDVAFAYAGHNVVLEIQATIPS 249

Query: 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367
           T + P+ + MW+G  VAY+ +A+C FPVA   ++ +GN V 
Sbjct: 250 TPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVD 290

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/286 (43%), Positives = 178/286 (62%), Gaps = 4/286 (1%)

Query: 81  EEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILS 140
             +  L +    D WLPIT SRN    Y+ FHN+ A VG   L LP   A LGW  GI  
Sbjct: 20  HRIDELERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAV 79

Query: 141 LTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTAT 200
           L +++   LYTLW +V++HE VPGKR++RY EL Q AFGERLG+++ +   + +  G   
Sbjct: 80  LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCI 139

Query: 201 TLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260
             ++ GG+++K F +I C   CS  P+    + ++F S   VLS LPN NSI+G+SL+ A
Sbjct: 140 VYMVTGGQSLKKFHEIACQD-CS--PIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAA 196

Query: 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEI 320
           + +++YST+ W  + ++    ++ Y    S + A+TV S    LG IAFA+ GHN+ +EI
Sbjct: 197 VMSLSYSTIAWTATAAKGVQEDVQYG-YKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEI 255

Query: 321 QATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           QAT+PST  +P+  PMWRG  VAY+ +A+C FPVA+ G+  +GN V
Sbjct: 256 QATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAV 301

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 174/275 (63%), Gaps = 2/275 (0%)

Query: 93  DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
           + WLPIT SRN N +Y+AFHN+ A VG   L LP A + LGW  G++ L +++   LYT 
Sbjct: 25  EDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTF 84

Query: 153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
           W ++++HE   GKR++RY EL QAAFG++LG+++ +   + +        ++ GGE++K 
Sbjct: 85  WQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKK 144

Query: 213 FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272
             Q+  G       L    + L+F S   VLS L N NSI+G+SL+ A+ +++YST+ WV
Sbjct: 145 IHQLSVGDY-ECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWV 203

Query: 273 LSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332
            S+++    N+ Y      +  +   + + ALG +AFA+ GHN+ +EIQAT+PST ++P+
Sbjct: 204 ASLTKGVANNVEYG-YKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPS 262

Query: 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367
             PMW+GA VAY+ +A C FPVA+ GFW +GN V 
Sbjct: 263 KRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVE 297

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 4/281 (1%)

Query: 87  TKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC 146
           T     + W     SR     Y+ FH + A +G   L LP A A+LGW  G   L + + 
Sbjct: 13  TDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWG 72

Query: 147 WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLG 206
             L T+W +VQLHE VPG R++RY++L + AFG +LG W+ L   + +  G     ++ G
Sbjct: 73  LTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTG 132

Query: 207 GETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTY 266
           G+ +K F +I C    +  P+    W L F  +  +LSQLPN NS+AG+SL  A+ ++ Y
Sbjct: 133 GKCLKQFVEITCS---TCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCY 189

Query: 267 STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326
           ST+ W  S++  R P++SY+   + +P    F V NALG I+FAF GH +A+EIQATMPS
Sbjct: 190 STIAWGGSIAHGRVPDVSYD-YKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPS 248

Query: 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367
           T + P+ VPMW+G   AY+  A+C FPVA+  +WA+G  V 
Sbjct: 249 TPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVD 289

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/278 (40%), Positives = 173/278 (62%), Gaps = 7/278 (2%)

Query: 93  DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
           + WLPIT SRN N +Y+AFHN+ A VG   L LP A + LGW  G++ L +++   LYTL
Sbjct: 23  EDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTL 82

Query: 153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
           W ++++HE   G+R++RY EL QAAFG++LG+++ +   + +        ++ GG+++K 
Sbjct: 83  WQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKN 142

Query: 213 FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272
              +  G       L    + L+F S   VLS L N NSI+G+SL+ A+ +V+YST+ WV
Sbjct: 143 VHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWV 202

Query: 273 LSVSQPRPP---NISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329
            S+ +          Y   +++ P A     ++ALG +AFA+ GHN+ +EIQAT+PST +
Sbjct: 203 ASLRKGATTGSVEYGYRKRTTSVPLA----FLSALGEMAFAYAGHNVVLEIQATIPSTPE 258

Query: 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367
           +P+  PMW+GA VAY+ +A C FPVA+ GF  +GN V 
Sbjct: 259 NPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVE 296

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 172/287 (59%), Gaps = 4/287 (1%)

Query: 77  KGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSW 136
           KG   +  +  +++  D WLP+T SR    +Y+AFHN+ A VG   L LP A + LGW  
Sbjct: 11  KGRSTDNNNHRQMDYND-WLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGP 69

Query: 137 GILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSA 196
           G++++ +++    Y+LW +VQLHEAVPGKR +RY EL Q AFG +LG W+ +   + +  
Sbjct: 70  GLVAIIMSWAITFYSLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQI 129

Query: 197 GTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS 256
            +     + GG+++K F +++   L     +    + L F +L +VLSQ P+ NSI  +S
Sbjct: 130 ASDIVYNVTGGKSLKKFVELLFPNL---EHIRQTYYILGFAALQLVLSQSPDFNSIKIVS 186

Query: 257 LIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNL 316
           L+ A+ +  YS +  V S+++      S   +   + A+ VF   N +G IAFAF GH++
Sbjct: 187 LLAALMSFLYSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSV 246

Query: 317 AMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363
            +EIQAT+PST + P+  PMW+G  VAY+ + +C   VAI G+WA+G
Sbjct: 247 VLEIQATIPSTPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFG 293

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
224137338	521	lysine/histidine transporter [Populus tr	0.882	0.690	0.944	0.0
255538442	521	amino acid transporter, putative [Ricinu	0.887	0.694	0.925	0.0
449446959	520	PREDICTED: lysine histidine transporter-	0.960	0.753	0.856	0.0
449498672	520	PREDICTED: LOW QUALITY PROTEIN: lysine h	0.960	0.753	0.853	0.0
147810058	493	hypothetical protein VITISV_021650 [Viti	0.867	0.718	0.919	0.0
225458487	514	PREDICTED: lysine histidine transporter-	0.867	0.688	0.919	0.0
297852368	519	amino acid transporter family protein [A	0.877	0.689	0.894	0.0
15220283	519	Lysine histidine transporter-like 8 [Ara	0.877	0.689	0.891	0.0
357446379	520	Lysine/histidine transporter [Medicago t	0.877	0.688	0.888	0.0
5688864	519	amino acid transporter-like protein 1 [A	0.877	0.689	0.888	0.0

>gi|224137338|ref|XP_002327101.1| lysine/histidine transporter [Populus trichocarpa] gi|222835416|gb|EEE73851.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/360 (94%), Positives = 353/360 (98%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPRASTPE+LTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRASTPEILTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG+WL
Sbjct: 121 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGLWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 181 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGAITA+TYSTMVWVLSVSQ RPP ISYEPLS  S +A+VFSVMNALGI
Sbjct: 241 PNLNSIAGLSLIGAITAITYSTMVWVLSVSQQRPPTISYEPLSLPSFSASVFSVMNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNLAMEIQATMPSTFKHPAHVPMW+GAKVAY FIA+CLFPVAIGGFWAYGNL+
Sbjct: 301 VAFAFRGHNLAMEIQATMPSTFKHPAHVPMWKGAKVAYFFIALCLFPVAIGGFWAYGNLM 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538442|ref|XP_002510286.1| amino acid transporter, putative [Ricinus communis] gi|223550987|gb|EEF52473.1| amino acid transporter, putative [Ricinus communis]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/362 (92%), Positives = 349/362 (96%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTPSGQRSPRP SKEAKSST WTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPSGQRSPRPPSKEAKSSTGWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEE+GHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEEMGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 121 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 181 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGAITA+TYSTMVWVLSVSQ RPP+ISYEPLS  S  A+VFS +NALGI
Sbjct: 241 PNLNSIAGLSLIGAITAITYSTMVWVLSVSQERPPSISYEPLSLPSFTASVFSALNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNL +EIQATMPSTFKHPAHVPMW+GAKVAY FIAMCLFPVAIGGFWAYGNL+
Sbjct: 301 VAFAFRGHNLVLEIQATMPSTFKHPAHVPMWKGAKVAYFFIAMCLFPVAIGGFWAYGNLM 360

Query: 367 ST 368
            T
Sbjct: 361 PT 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446959|ref|XP_004141237.1| PREDICTED: lysine histidine transporter-like 8-like [Cucumis sativus]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/396 (85%), Positives = 362/396 (91%), Gaps = 4/396 (1%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTP+GQRSPRP SKEAKSSTAWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPTGQRSPRPPSKEAKSSTAWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAG+GFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGIGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELA+AAFGERLGVWL
Sbjct: 121 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAEAAFGERLGVWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           A+FPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 181 AVFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQ RPP ISYEPLS  S +++VFSVMNALGI
Sbjct: 241 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPTISYEPLSMPSASSSVFSVMNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAKVAY FIA CLFPVAIGG+WAYGNL+
Sbjct: 301 VAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKVAYFFIAACLFPVAIGGYWAYGNLM 360

Query: 367 ST---LNA-KAHNKFTIGKKKELLDVLAYVEKCRKS 398
            +   LNA  A +   I +    +  L  V  C  S
Sbjct: 361 PSGGMLNAIYAFHSHDIPRGLLAITFLLVVFNCLSS 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498672|ref|XP_004160601.1| PREDICTED: LOW QUALITY PROTEIN: lysine histidine transporter-like 8-like [Cucumis sativus]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/396 (85%), Positives = 361/396 (91%), Gaps = 4/396 (1%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTP+GQRSPRP SKEAKSSTAWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPTGQRSPRPPSKEAKSSTAWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAG+GFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGIGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELA+AAFGERLGVWL
Sbjct: 121 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAEAAFGERLGVWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           A+FPTVYLSAGTAT LIL+GGETMK+FF IVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 181 AVFPTVYLSAGTATALILIGGETMKLFFXIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQ RPP ISYEPLS  S +++VFSVMNALGI
Sbjct: 241 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPTISYEPLSMPSASSSVFSVMNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAKVAY FIA CLFPVAIGG+WAYGNL+
Sbjct: 301 VAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKVAYFFIAACLFPVAIGGYWAYGNLM 360

Query: 367 ST---LNA-KAHNKFTIGKKKELLDVLAYVEKCRKS 398
            +   LNA  A +   I +    +  L  V  C  S
Sbjct: 361 PSGGMLNAIYAFHSHDIPRGLLAITFLLVVFNCLSS 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810058|emb|CAN78281.1| hypothetical protein VITISV_021650 [Vitis vinifera]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/360 (91%), Positives = 346/360 (96%), Gaps = 6/360 (1%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTPSGQRSPRPASK      AWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPSGQRSPRPASK------AWTPTSFISPRFLSPIG 54

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 55  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 114

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAY WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 115 VAFAFLGWSWGILSLTIAYFWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 174

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 175 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 234

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQ RPP ISY+PLSS S +A+VFSVMNALGI
Sbjct: 235 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPPISYQPLSSPSFSASVFSVMNALGI 294

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAY+ IAMC+FPVAIGGFWAYGNL+
Sbjct: 295 VAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYVLIAMCIFPVAIGGFWAYGNLM 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458487|ref|XP_002284114.1| PREDICTED: lysine histidine transporter-like 8 [Vitis vinifera] gi|302142384|emb|CBI19587.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/360 (91%), Positives = 346/360 (96%), Gaps = 6/360 (1%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTPSGQRSPRPASK      AWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPSGQRSPRPASK------AWTPTSFISPRFLSPIG 54

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 55  TPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 114

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAY WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 115 VAFAFLGWSWGILSLTIAYFWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 174

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 175 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 234

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQ RPP ISY+PLSS S +A+VFSVMNALGI
Sbjct: 235 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPPISYQPLSSPSFSASVFSVMNALGI 294

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           +AFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAY+ IAMC+FPVAIGGFWAYGNL+
Sbjct: 295 VAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYVLIAMCIFPVAIGGFWAYGNLM 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852368|ref|XP_002894065.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297339907|gb|EFH70324.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/360 (89%), Positives = 345/360 (95%), Gaps = 2/360 (0%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct: 1   MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 59  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct: 239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y FIA+C+FP++IGGFWAYGNL+
Sbjct: 299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFFIALCIFPISIGGFWAYGNLM 358

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220283|ref|NP_175198.1| Lysine histidine transporter-like 8 [Arabidopsis thaliana] gi|75266609|sp|Q9SX98.1|LHTL8_ARATH RecName: Full=Lysine histidine transporter-like 8; AltName: Full=Amino acid transporter-like protein 1 gi|5668793|gb|AAD46019.1|AC007519_4 Similar to gb|U39782 lysine and histidine specific transporter from Arabidopsis thaliana. EST gb|Z17527 comes from this gene [Arabidopsis thaliana] gi|17529318|gb|AAL38886.1| putative lysine and histidine specific transporter protein [Arabidopsis thaliana] gi|21436363|gb|AAM51351.1| putative lysine and histidine specific transporter protein [Arabidopsis thaliana] gi|332194078|gb|AEE32199.1| Lysine histidine transporter-like 8 [Arabidopsis thaliana]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/360 (89%), Positives = 344/360 (95%), Gaps = 2/360 (0%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct: 1   MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 59  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct: 239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNL+
Sbjct: 299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446379|ref|XP_003593467.1| Lysine/histidine transporter [Medicago truncatula] gi|355482515|gb|AES63718.1| Lysine/histidine transporter [Medicago truncatula]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/358 (88%), Positives = 342/358 (95%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           MEERPETELISIPATPR STPE+LTPSGQRSPR  SKEAKSS AWTPTSFISPRFLSPIG
Sbjct: 1   MEERPETELISIPATPRVSTPEILTPSGQRSPRQGSKEAKSSNAWTPTSFISPRFLSPIG 60

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVL+NMKGYLE+VGHLTKLNPQDAWLPITESRNGNAHY+ FHNLNAGVGFQAL+LP
Sbjct: 61  TPMKRVLINMKGYLEDVGHLTKLNPQDAWLPITESRNGNAHYSTFHNLNAGVGFQALVLP 120

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFA+LGWSWGI+SLT+AYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 121 VAFAYLGWSWGIISLTVAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 180

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGP C+SNPLTTVEWYLVFTSL IVLSQL
Sbjct: 181 ALFPTVYLSAGTATALILVGGETMKLFFQIVCGPTCTSNPLTTVEWYLVFTSLSIVLSQL 240

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQ RPP+ISYEPLS A P++++F  +NALGI
Sbjct: 241 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPSISYEPLSLAKPSSSLFLALNALGI 300

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGN 364
           +AF+FRGHNL +EIQATMPSTFKHPA VPMW+GAKVAY FIAMCLFP+AIGGFWAYGN
Sbjct: 301 VAFSFRGHNLVLEIQATMPSTFKHPARVPMWKGAKVAYFFIAMCLFPMAIGGFWAYGN 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5688864|dbj|BAA82706.1| amino acid transporter-like protein 1 [Arabidopsis thaliana]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/360 (88%), Positives = 344/360 (95%), Gaps = 2/360 (0%)

Query: 7   MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
           M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct: 1   MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query: 67  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
           TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct: 59  TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query: 127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
           VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct: 119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query: 187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
           ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct: 179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query: 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
           P+LNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct: 239 PDLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query: 307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
           IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNL+
Sbjct: 299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2015383	519	AT1G47670 [Arabidopsis thalian	0.877	0.689	0.891	6.3e-179
TAIR|locus:2132816	478	LHT7 "LYS/HIS transporter 7" [	0.754	0.644	0.423	3.8e-69
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.664	0.614	0.454	6e-64
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.686	0.634	0.449	6e-64
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.676	0.625	0.425	3.4e-61
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.651	0.596	0.440	1.5e-60
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.686	0.618	0.433	1.9e-60
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.661	0.598	0.419	4.6e-57
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.654	0.606	0.420	5.3e-56
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.651	0.593	0.397	6.5e-51

TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1737 (616.5 bits), Expect = 6.3e-179, P = 6.3e-179
 Identities = 321/360 (89%), Positives = 344/360 (95%)

Query:     7 MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIG 66
             M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIG
Sbjct:     1 MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIG 58

Query:    67 TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLP 126
             TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQAL+LP
Sbjct:    59 TPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLP 118

Query:   127 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 186
             VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL
Sbjct:   119 VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWL 178

Query:   187 ALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246
             ALFPTVYLSAGTAT LIL+GGETMK+FFQIVCGPLC+SNPLTTVEWYLVFTSLCIVLSQL
Sbjct:   179 ALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQL 238

Query:   247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGI 306
             PNLNSIAGLSLIGA+TA+TYSTMVWVLSVSQPRP  ISYEPLS  S + ++F+V+NALGI
Sbjct:   239 PNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGI 298

Query:   307 IAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             IAFAFRGHNL +EIQ+TMPSTFKHPAHVPMWRGAK++Y  IA+C+FP++IGGFWAYGNL+
Sbjct:   299 IAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLM 358

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 135/319 (42%), Positives = 203/319 (63%)

Query:    58 SPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAG 117
             SP F+SP  +   + +   K    + G +    P + WLPITESR GN + A FH L +G
Sbjct:    19 SPLFMSPAPSTDPQPISGEKNG-GDGGRI----PVEEWLPITESRKGNVYTATFHLLCSG 73

Query:   118 VGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177
             +G Q +LLP AFA LGW WG + LT+ + W+LYT W+LVQLHEAVPG R +RYV LA A+
Sbjct:    74 IGLQVILLPAAFAALGWVWGTIILTVGFVWKLYTTWLLVQLHEAVPGIRISRYVRLAIAS 133

Query:   178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFT 237
             FG +LG  L +FP +YLS G  T L++ GG++++   QI+     ++ PLT+V+ +LVF+
Sbjct:   134 FGVKLGKLLGIFPVMYLSGGACTILVITGGKSIQQLLQIMSDD--NTAPLTSVQCFLVFS 191

Query:   238 SLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSV-SQPRPPNISYEPLSSASPAAT 296
              + +++SQ PNLNS+ G+SLIGA   + Y T++W+L V S  +   +S   +S A+   +
Sbjct:   192 CIAMIMSQFPNLNSLFGVSLIGAFMGIAYCTVIWILPVASDSQRTQVS---VSYATMDKS 248

Query:   297 VFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAI 356
                + NA+G+IA  +RG+NL +EIQ T+PS  K+P+   MWR   +++  +A+C+FP+  
Sbjct:   249 FVHIFNAIGLIALVYRGNNLVLEIQGTLPSDSKNPSCKTMWRAVMISHALVAICMFPLTF 308

Query:   357 GGFWAYGNLVSTLNAKAHN 375
               +WAYG+ +        N
Sbjct:   309 AVYWAYGDKIPATGGPVGN 327

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 125/275 (45%), Positives = 182/275 (66%)

Query:    93 DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
             D WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  GI  L +++   LYTL
Sbjct:    18 DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTL 77

Query:   153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
             W +V++HE VPGKR++RY EL Q AFGE+LG+W+ +   + +  G     ++ GG+++K 
Sbjct:    78 WQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKK 137

Query:   213 FFQIVC-GPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVW 271
             F  ++C G  C +  LT   + ++F S+  VLSQLPN NSI+G+SL  A+ +++YST+ W
Sbjct:   138 FHDVLCEGHGCKNIKLTY--FIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAW 195

Query:   272 VLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331
               SV + +  ++ Y  L + +    VF   +ALG +AFA+ GHN+ +EIQAT+PST + P
Sbjct:   196 GASVDKGKVADVDYH-LRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 254

Query:   332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             +  PMW+G  VAY+ +A+C FPVA+ G+WA+GN V
Sbjct:   255 SKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHV 289

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 128/285 (44%), Positives = 182/285 (63%)

Query:    82 EVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSL 141
             EV    + N  D WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  G+  +
Sbjct:    10 EVAAAKQKNVDD-WLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIM 68

Query:   142 TIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATT 201
              +++   LYTLW +V++HE VPGKR +RY EL Q AFGE+LG+W+ +   + +  G    
Sbjct:    69 VMSWIITLYTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIV 128

Query:   202 LILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI 261
              ++ GG ++K   Q+VC P C    + T  W ++F S+  V+S LPN NSI+ +SL  A+
Sbjct:   129 YMVTGGASLKKVHQLVC-PDCKE--IRTTFWIMIFASVHFVISHLPNFNSISIISLAAAV 185

Query:   262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQ 321
              ++TYST+ W  SV +   P++ Y P +S      VF+ +NALG +AFA+ GHN+ +EIQ
Sbjct:   186 MSLTYSTIAWAASVHKGVHPDVDYSPRASTD-VGKVFNFLNALGDVAFAYAGHNVVLEIQ 244

Query:   322 ATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             AT+PST + P+ VPMWRG  VAY+ +A+C FPVA  G++ +GN V
Sbjct:   245 ATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSV 289

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 119/280 (42%), Positives = 179/280 (63%)

Query:    87 TKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC 146
             TK    D WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  G+  + +++ 
Sbjct:    14 TKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWL 73

Query:   147 WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLG 206
                YTLW +VQ+HE VPGKR++RY EL Q AFGE+LG+W+ +   + +  G     ++ G
Sbjct:    74 ITFYTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTG 133

Query:   207 GETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTY 266
             G+++K    ++C   C +  + T  W ++F S+  VL+ LPN NSI+ +SL  A+ +++Y
Sbjct:   134 GKSLKKIHDLLCTD-CKN--IRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSY 190

Query:   267 STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326
             ST+ W  SV +   PN+ Y   +S + +  VF+ +NALG +AFA+ GHN+ +EIQAT+PS
Sbjct:   191 STIAWATSVKKGVHPNVDYSSRASTT-SGNVFNFLNALGDVAFAYAGHNVVLEIQATIPS 249

Query:   327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             T + P+ + MW+G  VAY+ +A+C FPVA   ++ +GN V
Sbjct:   250 TPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSV 289

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 119/270 (44%), Positives = 177/270 (65%)

Query:    95 WLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWI 154
             WLPIT SRN    Y+AFHN+ A VG   L LP A + LGW  GI  L +++   LYTLW 
Sbjct:    27 WLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQ 86

Query:   155 LVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFF 214
             +V++HE VPGKR++RY EL Q AFGE+LG+++ +   + +  G     ++ GG+++K F 
Sbjct:    87 MVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFH 146

Query:   215 QIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLS 274
             ++VC   C   P+    + ++F S+  VLS LPN NSI+G+SL  A+ +++YST+ W  S
Sbjct:   147 ELVCDD-CK--PIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASS 203

Query:   275 VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334
              S+    ++ Y    + + A TVF+  + LG +AFA+ GHN+ +EIQAT+PST + P+  
Sbjct:   204 ASKGVQEDVQYG-YKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 262

Query:   335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGN 364
             PMWRG  VAY+ +A+C FPVA+ G++ +GN
Sbjct:   263 PMWRGVIVAYIVVALCYFPVALVGYYIFGN 292

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 123/284 (43%), Positives = 178/284 (62%)

Query:    83 VGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLT 142
             +  L +    D WLPIT SRN    Y+ FHN+ A VG   L LP   A LGW  GI  L 
Sbjct:    22 IDELERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLI 81

Query:   143 IAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTL 202
             +++   LYTLW +V++HE VPGKR++RY EL Q AFGERLG+++ +   + +  G     
Sbjct:    82 LSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVY 141

Query:   203 ILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAIT 262
             ++ GG+++K F +I C   CS  P+    + ++F S   VLS LPN NSI+G+SL+ A+ 
Sbjct:   142 MVTGGQSLKKFHEIACQD-CS--PIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVM 198

Query:   263 AVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQA 322
             +++YST+ W  + ++    ++ Y    S + A+TV S    LG IAFA+ GHN+ +EIQA
Sbjct:   199 SLSYSTIAWTATAAKGVQEDVQYG-YKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQA 257

Query:   323 TMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             T+PST  +P+  PMWRG  VAY+ +A+C FPVA+ G+  +GN V
Sbjct:   258 TIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAV 301

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 114/272 (41%), Positives = 173/272 (63%)

Query:    95 WLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWI 154
             WLPIT SRN N +Y+AFHN+ A VG   L LP A + LGW  G++ L +++   LYT W 
Sbjct:    27 WLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQ 86

Query:   155 LVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFF 214
             ++++HE   GKR++RY EL QAAFG++LG+++ +   + +        ++ GGE++K   
Sbjct:    87 MIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIH 146

Query:   215 QIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLS 274
             Q+  G       L    + L+F S   VLS L N NSI+G+SL+ A+ +++YST+ WV S
Sbjct:   147 QLSVGDY-ECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVAS 205

Query:   275 VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334
             +++    N+ Y      +  +   + + ALG +AFA+ GHN+ +EIQAT+PST ++P+  
Sbjct:   206 LTKGVANNVEYG-YKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKR 264

Query:   335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366
             PMW+GA VAY+ +A C FPVA+ GFW +GN V
Sbjct:   265 PMWKGAIVAYIIVAFCYFPVALVGFWTFGNNV 296

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 114/271 (42%), Positives = 165/271 (60%)

Query:    93 DAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTL 152
             + W     SR     Y+ FH + A +G   L LP A A+LGW  G   L + +   L T+
Sbjct:    19 EKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWGLTLNTM 78

Query:   153 WILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212
             W +VQLHE VPG R++RY++L + AFG +LG W+ L   + +  G     ++ GG+ +K 
Sbjct:    79 WQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQ 138

Query:   213 FFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272
             F +I C   C+  P+    W L F  +  +LSQLPN NS+AG+SL  A+ ++ YST+ W 
Sbjct:   139 FVEITCST-CT--PVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWG 195

Query:   273 LSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332
              S++  R P++SY+   + +P    F V NALG I+FAF GH +A+EIQATMPST + P+
Sbjct:   196 GSIAHGRVPDVSYD-YKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPS 254

Query:   333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363
              VPMW+G   AY+  A+C FPVA+  +WA+G
Sbjct:   255 KVPMWQGVIGAYVVNAVCYFPVALICYWAFG 285

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 107/269 (39%), Positives = 164/269 (60%)

Query:    95 WLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWI 154
             WLP+T SR    +Y+AFHN+ A VG   L LP A + LGW  G++++ +++    Y+LW 
Sbjct:    28 WLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQ 87

Query:   155 LVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFF 214
             +VQLHEAVPGKR +RY EL Q AFG +LG W+ +   + +   +     + GG+++K F 
Sbjct:    88 MVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFV 147

Query:   215 QIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLS 274
             +++   L     +    + L F +L +VLSQ P+ NSI  +SL+ A+ +  YS +  V S
Sbjct:   148 ELLFPNL---EHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVAS 204

Query:   275 VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334
             +++      S   +   + A+ VF   N +G IAFAF GH++ +EIQAT+PST + P+  
Sbjct:   205 IAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKK 264

Query:   335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363
             PMW+G  VAY+ + +C   VAI G+WA+G
Sbjct:   265 PMWKGVVVAYIIVIICYLFVAISGYWAFG 293

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX98	LHTL8_ARATH	No assigned EC number	0.8916	0.8774	0.6897	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	9e-36
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	6e-04
PLN03074	473	PLN03074, PLN03074, auxin influx permease; Provisi	0.003

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  135 bits (341), Expect = 9e-36
 Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 21/274 (7%)

Query: 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHE- 160
              +A  A F+ + A +G   L LP AF  LGW  G++ L I     LYTL +LVQ  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 161 --AVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVC 218
              V GKR   Y +L    FG +  + +     V L  G   + ++  G+ +   F    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNL-FGVCISYLIFAGDNLPAIFDSFF 119

Query: 219 GPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI---TAVTYSTMVWVLSV 275
                S       + ++F  + I LS +PNL++++ LSL+ A+     V     V  L V
Sbjct: 120 DTCHISLVY----FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGV 175

Query: 276 SQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH-V 334
              +   +      +    A +F    A+GII FAF GH + + IQ TM    K P+   
Sbjct: 176 LTAQG--VGSLGAKTNIKLARLFL---AIGIIVFAFEGHAVLLPIQNTM----KSPSKFK 226

Query: 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST 368
            M +    A + + +    V + G+ A+GN V  
Sbjct: 227 AMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKG 260

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 20/266 (7%)

Query: 116 AGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQ 175
           AGV    L LPVAF   G+  G+L L IA+     +L +L++   + P         L +
Sbjct: 25  AGV----LFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP-NGKASITSLVE 79

Query: 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLV 235
              G++ G  L      +   G     I+  G  +  F     G     NPL      L+
Sbjct: 80  DYLGKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFL----GNQFGLNPLPRKLGSLI 134

Query: 236 FTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAA 295
           F  +   LS L  L  +   SL+     V Y  ++ V  +    P N+   P +S S   
Sbjct: 135 FALVLAFLSWLGTLAVLKITSLL-VFGKVIYLVLLVVYLIPHWNPANLFALPSASQS--- 190

Query: 296 TVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVA 355
               ++ A+ +  F+F  H     +   M    +  +   + +   +  L   +    V 
Sbjct: 191 FWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVG 246

Query: 356 IGGFWAYGNLVST--LNAKAHNKFTI 379
              F  +G+LV    L AK  N   +
Sbjct: 247 FFVFGCFGSLVFGNILAAKEQNISLL 272

Length = 415

>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 62/269 (23%)

Query: 121 QALL-LPVAFAFLGWSWGILSLTIAY----CWQLYTLWILVQLH------EAVPGKRYN- 168
           Q LL LP +F+ LG   GIL   I Y     W  Y + +L   +      E V  K +  
Sbjct: 62  QVLLTLPYSFSQLGMLSGIL-FQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120

Query: 169 RYVELAQAAFGERLGVWLAL-FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSN-- 225
           ++ E+     G      + L F   +L  G+   LI                  C+SN  
Sbjct: 121 QWFEVLDGLLG-PYWKNVGLAFNCTFLLFGSVIQLIA-----------------CASNIY 162

Query: 226 ----PLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPP 281
                L    W  +F + C     +P+ ++    S +G +     +  + + ++S  +  
Sbjct: 163 YINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVE 222

Query: 282 NISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAK 341
            + +     + P   V     A  I+ + F GH + +EI   M +         MW+  K
Sbjct: 223 GVKH-----SGPTKLVLYFTGATNIL-YTFGGHAVTVEI---MHA---------MWKPQK 264

Query: 342 VAYLFIAMCLF------PVAIGGFWAYGN 364
             Y+++A  L+      P A   +WA+G+
Sbjct: 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGD 293

Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.95
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.94
PRK10483	414	tryptophan permease; Provisional	99.75
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.72
PRK09664	415	tryptophan permease TnaB; Provisional	99.7
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.67
PRK15132	403	tyrosine transporter TyrP; Provisional	99.64
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.46
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.42
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.08
PRK10655	438	potE putrescine transporter; Provisional	98.99
TIGR00909	429	2A0306 amino acid transporter.	98.9
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.9
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.89
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.86
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.8
PRK11021	410	putative transporter; Provisional	98.8
PRK10644	445	arginine:agmatin antiporter; Provisional	98.79
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.72
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.65
TIGR00911	501	2A0308 L-type amino acid transporter.	98.6
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.58
PRK10249	458	phenylalanine transporter; Provisional	98.57
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.56
TIGR00913	478	2A0310 amino acid permease (yeast).	98.54
PRK10580	457	proY putative proline-specific permease; Provision	98.54
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.53
TIGR00930	953	2a30 K-Cl cotransporter.	98.52
PRK11387	471	S-methylmethionine transporter; Provisional	98.52
PRK15049	499	L-asparagine permease; Provisional	98.52
PRK10238	456	aromatic amino acid transporter; Provisional	98.5
PRK10746	461	putative transport protein YifK; Provisional	98.48
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.46
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.43
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.42
PRK10836	489	lysine transporter; Provisional	98.32
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.26
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.18
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.07
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.0
PRK15238	496	inner membrane transporter YjeM; Provisional	97.9
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.83
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.69
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	97.31
COG3949	349	Uncharacterized membrane protein [Function unknown	97.27
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.26
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.15
PRK11375	484	allantoin permease; Provisional	97.04
KOG1286	554	consensus Amino acid transporters [Amino acid tran	96.67
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	96.52
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	95.82
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	95.31
PRK09442	483	panF sodium/panthothenate symporter; Provisional	94.91
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	94.52
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	93.92
KOG1289	550	consensus Amino acid transporters [Amino acid tran	93.08
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	92.58
TIGR00813	407	sss transporter, SSS family. have different number	92.22
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	91.35
PRK11017	404	codB cytosine permease; Provisional	91.22
COG1457	442	CodB Purine-cytosine permease and related proteins	89.69
PRK15015	701	carbon starvation protein A; Provisional	89.41
PRK12488	549	acetate permease; Provisional	87.33
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	86.88
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	85.23
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	84.28
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	82.86
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	80.31

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-45  Score=371.31  Aligned_cols=287  Identities=35%  Similarity=0.530  Sum_probs=244.5

Q ss_pred             CCCCCcccccccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh---cCCCc
Q 015344           90 NPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA---VPGKR  166 (408)
Q Consensus        90 ~~~d~~~~~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~---~~g~r  166 (408)
                      ...|+|++.+++|++|+++++||.++.++|.|+|+||||++++||+.|++++++++++++||..+|.+|.+.   ..++|
T Consensus        24 ~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r  103 (437)
T KOG1303|consen   24 SDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR  103 (437)
T ss_pred             cccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            456889999999999999999999999999999999999999999999999999999999999999988643   46778


Q ss_pred             cCCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccC
Q 015344          167 YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL  246 (408)
Q Consensus       167 ~~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l  246 (408)
                      ..+|.|+++++||+++..++..++.+. ++|+|++|++..+|+++.+++..+.+.+   .++...|+++++++.++++++
T Consensus       104 ~~~Y~dl~~~afG~~~~~iv~~~~~~~-~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s~l  179 (437)
T KOG1303|consen  104 RYRYPDLGQAAFGPKGRLLVSVLQYLE-LFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLSQL  179 (437)
T ss_pred             CCChHHHHHHHhCCCceEeeeHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHHHC
Confidence            889999999999998744555555444 5999999999999999999988775421   444678999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344          247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS  326 (408)
Q Consensus       247 ~~l~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~  326 (408)
                      ||+++++++|..++++++.|+++.+++++.+|...+....+..+..+.   ...++++|+++|+|.||.++||||++|  
T Consensus       180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~f~a~g~iaFaf~gH~v~peIq~tM--  254 (437)
T KOG1303|consen  180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTI---PTVFTALGIIAFAYGGHAVLPEIQHTM--  254 (437)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCC---cchhhhhhheeeeecCCeeeeehHhhc--
Confidence            999999999999999999999988888887775542221111111111   111899999999999999999999999  


Q ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHH
Q 015344          327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVL  389 (408)
Q Consensus       327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~  389 (408)
                        |+|++  |+|++.+++.+++++|+.++++|||+|||++++ ++.|+..|.|+...+|++.++
T Consensus       255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~  314 (437)
T KOG1303|consen  255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVL  314 (437)
T ss_pred             --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHH
Confidence              45766  779999999999999999999999999999999 999998888999888876444

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=6.9e-38  Score=324.13  Aligned_cols=290  Identities=17%  Similarity=0.175  Sum_probs=211.4

Q ss_pred             CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCcc
Q 015344          102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER  181 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~  181 (408)
                      .+++..+++||++|+++|+|+|+||+||+++||+.|+++++++++++.||+++|.++++. .+  ..+|+|+++++|||+
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~~  134 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGPW  134 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCHH
Confidence            478999999999999999999999999999999999999999999999999999999864 23  459999999999997


Q ss_pred             chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCC-CCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344          182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGP-LCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA  260 (408)
Q Consensus       182 ~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~-~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~  260 (408)
                      ++++++++. ...++|+|++|+++.+|.++.+++..... .......++..+.+++.++++|++++|++++|+++|.+++
T Consensus       135 g~~~v~~~~-~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~  213 (467)
T PTZ00206        135 GSYYVAATR-AFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV  213 (467)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence            666666544 45579999999999999999876531110 0000001122233445566788999999999999999998


Q ss_pred             HHHHHHHHhheeeeeecCCCCCC---CCCCCC-CCCCcCc-HHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 015344          261 ITAVTYSTMVWVLSVSQPRPPNI---SYEPLS-SASPAAT-VFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP  335 (408)
Q Consensus       261 ~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~-~~~~~~~-~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~  335 (408)
                      ++.+.+.+++++.++.++.+++.   ++.+.. .....++ ..+++.++|+++|||.||.+++++++||    |+|+.++
T Consensus       214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~  289 (467)
T PTZ00206        214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK  289 (467)
T ss_pred             HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence            66443333332333334433221   111100 0000111 2368899999999999999999999999    5677777


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCC--C-ch-hHHHHHHHH-HHHHH---Hhhhcccc
Q 015344          336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAH--N-KF-TIGKKKELL-DVLAY---VEKCRKSQ  399 (408)
Q Consensus       336 m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~--~-~~-~~~~~~~ll-~~~~~---~~~~~~~~  399 (408)
                      |.+++..++.++.++|..+|++||++||+++++ +++|++  + +. .++.....+ .+++|   +++||+++
T Consensus       290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i  362 (467)
T PTZ00206        290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNAL  362 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            889999999999999999999999999999999 888874  2 21 222222222 22233   67888865

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=305.56  Aligned_cols=273  Identities=19%  Similarity=0.260  Sum_probs=219.3

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhc---CCCccCCHHHHHHHH
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAV---PGKRYNRYVELAQAA  177 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~---~g~r~~sY~el~~~~  177 (408)
                      ++..|..++..|++|+++|+|+|++|+||+++||+.|.+..++.+.++.||+++|++|.+..   .+....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999997532   122345888888766


Q ss_pred             h----------CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCC
Q 015344          178 F----------GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLP  247 (408)
Q Consensus       178 ~----------G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~  247 (408)
                      +          |++ +|.+..+..+..|+|+|++|+++++++++++.+..     ....++.+.|+.+..+..+++.++|
T Consensus       124 ~~~~~~~~r~~g~~-~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-----~~~~~s~~~~i~~~~~~~lll~~Ir  197 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPA-ARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-----SPGVLSVRLYILIQLPPLLLLNLIR  197 (449)
T ss_pred             HcCCcHHHHhhcHH-HHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-----CCCCccHHHHHHHHHHHHHHHHHHH
Confidence            5          333 34455556677799999999999999999998731     2245667888888777888899999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344          248 NLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST  327 (408)
Q Consensus       248 ~l~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~  327 (408)
                      +++.|+.+|++|.+..+.-..++....+ +. .++.     .+.....++.+++.++|+.+|||+|+++++|++++|   
T Consensus       198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~-~~-~~~~-----~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M---  267 (449)
T KOG1304|consen  198 NLKILSPFSLFANVFILVGLAIIMYYLV-QD-LPPT-----SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM---  267 (449)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHH-hc-cCCc-----cccccccchhhhHHHHHHHHHHhccceEEEehhhcc---
Confidence            9999999999998876544333322222 21 1221     112223357889999999999999999999999999   


Q ss_pred             CCCCCccc-cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHHHH
Q 015344          328 FKHPAHVP-MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVLAY  391 (408)
Q Consensus       328 ~~~P~~~~-m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~~~  391 (408)
                       |||++++ -.+++..+|.+++++|..+|++||++||+++++ |..|+++ .|+++.++++.+++.
T Consensus       268 -k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I  331 (449)
T KOG1304|consen  268 -KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAI  331 (449)
T ss_pred             -cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHH
Confidence             6899864 237888999999999999999999999999999 9999998 899999998755543

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=4.2e-38  Score=319.19  Aligned_cols=290  Identities=25%  Similarity=0.386  Sum_probs=225.7

Q ss_pred             CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcC-CCccCCHHHHHHHHhCc
Q 015344          102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVP-GKRYNRYVELAQAAFGE  180 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~-g~r~~sY~el~~~~~G~  180 (408)
                      ||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|+++++..+ +++..+|+|++++++|+
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~   80 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP   80 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            58999999999999999999999999999999999999999999999999999999987532 34567999999999999


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA  260 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~  260 (408)
                      ++++++..+..+. ++|.|++|+++.+|.+..++....++    ...++..|.++..+++++++++|++++++++|.+|.
T Consensus        81 ~~~~~~~~~~~~~-~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~  155 (409)
T PF01490_consen   81 KGKWFVDICIFIY-LFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGL  155 (409)
T ss_pred             cccccccchheec-cccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhh
Confidence            9877777655554 59999999999999999987654322    233456677777778888999999999999999998


Q ss_pred             HHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc-cccchh
Q 015344          261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH-VPMWRG  339 (408)
Q Consensus       261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~-~~m~k~  339 (408)
                      ++.+.++++.+.........++.+.. ..+.....++.+++.++|+++|||.||.+++++++||    |+|++ ++++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~  230 (409)
T PF01490_consen  156 FSIFYFIVIVVIYIISYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKV  230 (409)
T ss_pred             hccceeeeeecceeeeeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCcccccccee
Confidence            76543222222222222222221111 0111123456789999999999999999999999999    56777 567899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHH----HH---Hhhhcccccc
Q 015344          340 AKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVL----AY---VEKCRKSQLQ  401 (408)
Q Consensus       340 v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~----~~---~~~~~~~~~~  401 (408)
                      +..++.+++++|+.+|++||++||+++++ +++|+++..+....++++..+    ++   ++++|+++.+
T Consensus       231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~  300 (409)
T PF01490_consen  231 LSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN  300 (409)
T ss_pred             eeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence            99999999999999999999999999999 999998766566656643222    22   5555555443

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=6.1e-33  Score=286.94  Aligned_cols=260  Identities=17%  Similarity=0.217  Sum_probs=202.3

Q ss_pred             CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh----c--CCCcc----CCHH
Q 015344          102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA----V--PGKRY----NRYV  171 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~----~--~g~r~----~sY~  171 (408)
                      .+++..++.+|++|..+|.|+|+||+||+++||+.|+++++++++++.||.++|.+|+.+    .  ++.+.    .+|.
T Consensus        44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~  123 (473)
T PLN03074         44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF  123 (473)
T ss_pred             CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999987422    1  11111    2689


Q ss_pred             HHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchh
Q 015344          172 ELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNS  251 (408)
Q Consensus       172 el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~  251 (408)
                      |+++..+||+|+++...+..+++ ++.|+.|++..++++..+    .      ..++.+.|+++++++++++.++|++++
T Consensus       124 e~~~~~~G~~~~~~~~~~~~v~l-~~~~v~~li~~~~~~~~l----~------~~~~~~~~~~i~~~v~~~~~~i~sl~~  192 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLAFNCTFL-LFGSVIQLIACASNIYYI----N------DNLDKRTWTYIFGACCATTVFIPSFHN  192 (473)
T ss_pred             HHHHHhcChhHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhhh----C------CCcCCCeEEeehHHHHHHHHHccCHHH
Confidence            99999999988887766665554 888999999877766644    1      133467788888888888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 015344          252 IAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP  331 (408)
Q Consensus       252 L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P  331 (408)
                      ++++|.+|+++++.+.+.+++.++.++..++.+++      ...++..++.++++++|+|+||.++|+|+++|    |+|
T Consensus       193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~------~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P  262 (473)
T PLN03074        193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKP  262 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cCh
Confidence            99999999887654333333333334443433221      12356678888999999999999999999999    689


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh---hhcCCCCchhHHHHHHH
Q 015344          332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST---LNAKAHNKFTIGKKKEL  385 (408)
Q Consensus       332 ~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~---il~n~~~~~~~~~~~~l  385 (408)
                      ++++  ++...++.+++++|+.+|+.||++|||++++   .++|++.+.| .+.+++
T Consensus       263 ~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~  316 (473)
T PLN03074        263 QKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVI  316 (473)
T ss_pred             hccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHH
Confidence            9876  7778888889999999999999999999864   5777764444 333443

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.96  E-value=1.6e-29  Score=255.80  Aligned_cols=261  Identities=22%  Similarity=0.292  Sum_probs=201.2

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE  180 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~  180 (408)
                      +++.+.+.+++|++|+++|+|+|++|+||++.|.+.|+++++++++++.++++++.+|.+.. +++  +|+++++.++|+
T Consensus         3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~--ty~~l~~~~~g~   79 (411)
T KOG1305|consen    3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GER--TYSSLGDLIFGK   79 (411)
T ss_pred             CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCC--CHHHHHHHHcCC
Confidence            35678899999999999999999999999999999999999999999999999999998753 555  999999999999


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCC--CCcchH-HHHHHHHHHHHhccCCCchhhHHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSN--PLTTVE-WYLVFTSLCIVLSQLPNLNSIAGLSL  257 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~--~l~~~~-~~ii~~~v~i~L~~l~~l~~L~~vS~  257 (408)
                      .+ ++.......+..+| |++|+++.+|.+..+......+ +..+  ..+++. |.++..++..+|+..|+++++++.|.
T Consensus        80 ~g-~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~-~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~  156 (411)
T KOG1305|consen   80 LG-KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLD-EEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA  156 (411)
T ss_pred             Cc-eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccc-cccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence            75 44332222222355 6999999999999766543221 1101  112222 56666677788998999999999999


Q ss_pred             HHHHHHHHHHHhheeeeeecCC-CCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344          258 IGAITAVTYSTMVWVLSVSQPR-PPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM  336 (408)
Q Consensus       258 i~~~~~l~y~~ii~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m  336 (408)
                      ++.++.+.+..+.+...+.... .+...+.    ......+++++.++++++|||.||.++.++++||    |||++++|
T Consensus       157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i  228 (411)
T KOG1305|consen  157 LSLASVVYFVVLVVYKYFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKI  228 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHH
Confidence            9987655444333322222111 1222222    1112223689999999999999999999999999    78999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCC
Q 015344          337 WRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHN  375 (408)
Q Consensus       337 ~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~  375 (408)
                      .++...+...++++|+.+|.+||+.||+.+++ ++.+++.
T Consensus       229 ~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~  268 (411)
T KOG1305|consen  229 QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDS  268 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCc
Confidence            99999999999999999999999999999999 9888874

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=5.8e-29  Score=237.96  Aligned_cols=285  Identities=19%  Similarity=0.257  Sum_probs=223.0

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhc--CCC---ccCCHHHHHH
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAV--PGK---RYNRYVELAQ  175 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~--~g~---r~~sY~el~~  175 (408)
                      +.|.+.++|.+|+.|++-|.=+++||+|..+.||+ ++..++.++.+|+||..+|++|..+.  +|.   ..++|.++|.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            45788999999999999999999999999999986 99999999999999999999997532  222   2369999999


Q ss_pred             HHhCccch-hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHH
Q 015344          176 AAFGERLG-VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG  254 (408)
Q Consensus       176 ~~~G~~~g-~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~  254 (408)
                      .+++++.| |++...+.+-+ +.+|+.|+++.+|.|..-+.        ....+.+.|+++.++++++.+++++++-.+.
T Consensus       193 ~C~~P~lGgr~V~~AQliEL-lmTCIlYvVv~gdLl~~~fP--------~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~  263 (524)
T KOG4303|consen  193 FCYKPGLGGRWVLAAQLIEL-LMTCILYVVVAGDLLQSCFP--------GLSVDKASWMMITSASLLPCSFLKDLKIVSR  263 (524)
T ss_pred             HhcCCCcchheeeHHHHHHH-HHHHHhhhheechhhhccCC--------CCCccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence            99998755 88888777776 89999999999998775322        1244578899999988888889999999999


Q ss_pred             HHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344          255 LSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV  334 (408)
Q Consensus       255 vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~  334 (408)
                      +|++..++-+..-++++.+|+.+-+  +-.|+.++   -..+...++..+|+++|+|..|..+|.+...|    ++|+++
T Consensus       264 lSf~ct~sH~viN~i~v~YCLs~~~--dW~wskv~---Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~F  334 (524)
T KOG4303|consen  264 LSFFCTISHLVINLIMVLYCLSFVS--DWSWSKVT---FSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQF  334 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--hccceeEE---EEEEcccCceEEEEEEEeeeceeecccccccc----CChhHh
Confidence            9988877766555555555544311  11111110   11234567888999999999999999999999    689998


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHH------HHH----HHHHHHHhhhcccccccC
Q 015344          335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKK------KEL----LDVLAYVEKCRKSQLQRS  403 (408)
Q Consensus       335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~------~~l----l~~~~~~~~~~~~~~~~~  403 (408)
                      .  -.+.++=+..+++-..+|.+||++||+++++ |.+|+++..+-+..      ++|    |.+++++|.-++++||+.
T Consensus       335 n--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~  412 (524)
T KOG4303|consen  335 N--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY  412 (524)
T ss_pred             e--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence            7  2344555556777889999999999999999 99999975433332      333    367788999999999999


Q ss_pred             Ccc
Q 015344          404 PRV  406 (408)
Q Consensus       404 ~~~  406 (408)
                      ||.
T Consensus       413 p~t  415 (524)
T KOG4303|consen  413 PQT  415 (524)
T ss_pred             CCC
Confidence            874

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.94  E-value=4e-25  Score=225.52  Aligned_cols=262  Identities=20%  Similarity=0.218  Sum_probs=203.0

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE  180 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~  180 (408)
                      +.+.+.+++++++++++||+|+|++|++++..|++++++++++.+.+++++.++++|+.++.+..+ .+|.+++++.+||
T Consensus         6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~G~   84 (415)
T COG0814           6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYLGK   84 (415)
T ss_pred             cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHhCc
Confidence            346778999999999999999999999999999999999999999999999999999987653322 5999999999999


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA  260 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~  260 (408)
                      +|+.++.. .+...++|.+++|++..++.+..+++.....    .+..+..+.+++.+++..+++.++...++..|++..
T Consensus        85 ~~~~li~~-s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~  159 (415)
T COG0814          85 KGGILIGL-SYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF  159 (415)
T ss_pred             chHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            87776665 4555679999999999999999998764321    114455566667666777888999999999998887


Q ss_pred             HHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhh
Q 015344          261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGA  340 (408)
Q Consensus       261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v  340 (408)
                      ...+..+++...... .-....  .. ..+......+..+..++|+++|||+||+++++++++|+    +++++..+|+.
T Consensus       160 ~~v~~~~~l~~~~~~-~~~~~~--l~-~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~----~~~~~~~~k~~  231 (415)
T COG0814         160 GKVIYLVLLVVYLIP-HWNPAN--LF-ALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMR----KNSKKAVRKAI  231 (415)
T ss_pred             HHHHHHHHHHHHHhc-ccCHHH--Hh-cccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhc----cchhHHHHHHH
Confidence            654333222211111 100000  00 00000124567899999999999999999999999994    45544467999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCc
Q 015344          341 KVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNK  376 (408)
Q Consensus       341 ~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~  376 (408)
                      ..+..+..++|+.++.++|..||+++++ ++.+.++.
T Consensus       232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~  268 (415)
T COG0814         232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN  268 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch
Confidence            9999999999999999999999999999 88777643

>PRK10483 tryptophan permease; Provisional

Probab=99.75  E-value=2.4e-16  Score=159.75  Aligned_cols=236  Identities=10%  Similarity=0.080  Sum_probs=161.7

Q ss_pred             cccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344           99 TESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus        99 ~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      +++++++.+++++.+..+.||+|+|+||.+.++.|+.+++++++++++...||..+++|...+.+  +..++..++++.+
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~L   83 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLL   83 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999875432  3458999999999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHH
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLS  256 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS  256 (408)
                      ||+| +++..+..+.+.++.+++|+--+|+.+.+.++.. +     .+.+...-.++|.++.-.+.+  .+..+++..+-
T Consensus        84 G~~g-~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-----~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l  156 (414)
T PRK10483         84 GKGW-NVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-----LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIV  156 (414)
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-----CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9974 4555555556669999999999999998887642 1     112222222233222212221  34445555444


Q ss_pred             HHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344          257 LIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM  336 (408)
Q Consensus       257 ~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m  336 (408)
                      +.+.+.++...+.. .  +.+-+.+.. .+ .. ......+..++.+++++++||..|+++|++.+.++   ++++  +.
T Consensus       157 ~~~~i~~f~~~~~~-l--~~~i~~~~L-~~-~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--ki  225 (414)
T PRK10483        157 LGAKVITFFLTFGS-L--LGHVQPATL-FN-VA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TI  225 (414)
T ss_pred             HHHHHHHHHHHHHH-H--HhhcCHHHH-hc-cc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HH
Confidence            44443332211111 1  111111100 00 00 01112244678999999999999999999999995   3344  46


Q ss_pred             chhhHHHHHHHHHHHHHH
Q 015344          337 WRGAKVAYLFIAMCLFPV  354 (408)
Q Consensus       337 ~k~v~~s~~i~~~~Y~~v  354 (408)
                      +|++.++..+..++|+..
T Consensus       226 r~~I~iGs~Iplv~yl~W  243 (414)
T PRK10483        226 VKCLVYGTLMALALYTIW  243 (414)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            699999999999999875

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.72  E-value=1.5e-15  Score=154.30  Aligned_cols=231  Identities=17%  Similarity=0.234  Sum_probs=155.7

Q ss_pred             CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344          103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL  182 (408)
Q Consensus       103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~  182 (408)
                      +.+.+.+++.+..+.||+|+|+||++.+..|+.++++++++++.+.+||..++.|+..+.+  +..+|.+++++.+||++
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~--~~~~~~~~a~~~lG~~g   79 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP--EGSSLTSMAEKYLGKKG   79 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhChHH
Confidence            5678899999999999999999999999999999999999999999999999999875432  24699999999999986


Q ss_pred             hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHHHHH
Q 015344          183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSLIGA  260 (408)
Q Consensus       183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~i~~  260 (408)
                      +.+..+ .+..+.++.+++|+.-+++.+++++....+     .+.+...-.+++.++.-.+..  .+-.++...+-....
T Consensus        80 ~~~~~~-~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-----~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~  153 (394)
T PF03222_consen   80 GIVIGI-SYLFLLYALLVAYISGGGSILSSLLGNQLG-----TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGM  153 (394)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHccHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            665554 444455999999999999999998775432     111122112222221111111  112222222222222


Q ss_pred             HHHHHHHHhheeeeeecCCCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 015344          261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG  339 (408)
Q Consensus       261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~  339 (408)
                      +.++.  .+.. ..+     ++.+.+.... .....++..++.+++++++||..|+++|++.+.++   ++++  +.+|+
T Consensus       154 i~~~~--~l~~-~~~-----p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~a  220 (394)
T PF03222_consen  154 IISFI--ILVV-YLI-----PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKA  220 (394)
T ss_pred             HHHHH--HHHH-HHh-----hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHH
Confidence            22211  1111 111     1111110111 11234677889999999999999999999999995   2333  35699


Q ss_pred             hHHHHHHHHHHHHHH
Q 015344          340 AKVAYLFIAMCLFPV  354 (408)
Q Consensus       340 v~~s~~i~~~~Y~~v  354 (408)
                      +.++..+..++|+..
T Consensus       221 i~~Gs~i~lv~yl~w  235 (394)
T PF03222_consen  221 IIIGSLIPLVMYLLW  235 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888888875

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.70  E-value=3.4e-15  Score=151.28  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=155.8

Q ss_pred             CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCcc
Q 015344          102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER  181 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~  181 (408)
                      +|.+.+.+++.+..+.||+|+|+||.+-++.|+.+++++++++++...||..+++|...+.+  +..++..++++.+||+
T Consensus         7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~   84 (415)
T PRK09664          7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNT   84 (415)
T ss_pred             hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChH
Confidence            35588889999999999999999999999999999999999999999999999999876442  3468999999999997


Q ss_pred             chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHHHH
Q 015344          182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSLIG  259 (408)
Q Consensus       182 ~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~i~  259 (408)
                       ++++..+....+.++.+++|+--+|+.+.+.++...+     .+.+...-.++|..+.-.+.  -.+..+++..+-+.+
T Consensus        85 -g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-----~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~  158 (415)
T PRK09664         85 -WNIISGITVAFVLYILTYAYISANGAIISETISMNLG-----YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGL  158 (415)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence             4555555555566999999999999999988754211     11112211223322211111  134445555444444


Q ss_pred             HHHHHHHHHhheeeeeecCCCCCCCCCCCCCCC----CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 015344          260 AITAVTYSTMVWVLSVSQPRPPNISYEPLSSAS----PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP  335 (408)
Q Consensus       260 ~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~----~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~  335 (408)
                      .+.++...+...        .++++.+-..+..    ....+..++.++|++++||+.|+++|++.+.++   +++++  
T Consensus       159 ~ii~f~~~~~~l--------~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--  225 (415)
T PRK09664        159 KIISFVIVFGSF--------FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--  225 (415)
T ss_pred             HHHHHHHHHHHH--------hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--
Confidence            333222111111        1111110000000    000133577899999999999999999999985   34444  


Q ss_pred             cchhhHHHHHHHHHHHHHH
Q 015344          336 MWRGAKVAYLFIAMCLFPV  354 (408)
Q Consensus       336 m~k~v~~s~~i~~~~Y~~v  354 (408)
                      .+|++..+..+..++|+..
T Consensus       226 ~~kaIl~Gs~IpLviY~~W  244 (415)
T PRK09664        226 LIKSVVFGSLLALVIYLFW  244 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3488888888888888654

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.67  E-value=1e-15  Score=154.58  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=160.9

Q ss_pred             HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHH
Q 015344          109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL  188 (408)
Q Consensus       109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~  188 (408)
                      +++.++++++|+|+|++|.++++.|+..+++++++.++++.++..++.|+..+.++  ..+|.+++++++||+++.+..+
T Consensus         2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~--~~~~~~~~~~~~G~~~g~~~~~   79 (381)
T TIGR00837         2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG--GASFNTIAKDLLGKTGNIIAGL   79 (381)
T ss_pred             ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999998765433  3589999999999987777665


Q ss_pred             HHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHH
Q 015344          189 FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYST  268 (408)
Q Consensus       189 ~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l~y~~  268 (408)
                      ... ..++..+++|.+..++.+..++......     ......+.+++.+++..+ ..+..+..++++.+.....+...+
T Consensus        80 ~~~-~~~~~~~~ay~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~  152 (381)
T TIGR00837        80 SLL-FVLYILTYAYISGGGSILSRLIGEYFGF-----PWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFA  152 (381)
T ss_pred             HHH-HHHHHHHHHHHHccHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHH
Confidence            433 3458899999999999988877643211     112222222232222222 244556666666555444333222


Q ss_pred             hheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHH
Q 015344          269 MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIA  348 (408)
Q Consensus       269 ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~  348 (408)
                      +.++..+.+.+.++  +.|.  ......+.++..++++..++|.+|.+++.+.++++    ++ +|++.|++..+..+++
T Consensus       153 ~~ii~~~~~~~~~~--~~~~--~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~----~~-~k~i~raii~g~~i~~  223 (381)
T TIGR00837       153 LVFSGLLPHVKGDL--LLDV--ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYD----GN-VKKVKKSILIGSAIAL  223 (381)
T ss_pred             HHHHHHHhhccHHH--HhcC--ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhc----cC-HHHHHHHHHHHHHHHH
Confidence            22111122211111  1111  00112456788999999999999999999999994    34 4557799999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 015344          349 MCLFPVAIGGFWAYG  363 (408)
Q Consensus       349 ~~Y~~vgi~GYlaFG  363 (408)
                      ++|+.+.+.....++
T Consensus       224 ~lY~l~~~~~~g~~~  238 (381)
T TIGR00837       224 VLYILWQLATMGNLP  238 (381)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999988766655543

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.64  E-value=2.4e-14  Score=145.44  Aligned_cols=237  Identities=15%  Similarity=0.121  Sum_probs=158.2

Q ss_pred             CcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344          104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG  183 (408)
Q Consensus       104 ~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g  183 (408)
                      ++.+++++.+..+.||+|+|+||.+.+..|++++++++++++.+..|+.+++.|+..+.  ++..++.+++++.+||+++
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~g~   80 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRYGQ   80 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChHHH
Confidence            47789999999999999999999999999999999999999999999999999975432  2345899999999999866


Q ss_pred             hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccC--CCchhhHHHHHHHHH
Q 015344          184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL--PNLNSIAGLSLIGAI  261 (408)
Q Consensus       184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l--~~l~~L~~vS~i~~~  261 (408)
                      .+..+ .+..+.+..+++|+.-+|+.+.+.+..+...     +++...+.++|.++.-.....  +-.+++..+-..+.+
T Consensus        81 ~i~~~-~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-----~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~i  154 (403)
T PRK15132         81 WLTGF-SMMFLMYALTAAYISGAGELLASSISDWTGI-----SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKI  154 (403)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            65554 4455559999999999999988877653321     223344444444332222222  223333333222222


Q ss_pred             HHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhH
Q 015344          262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAK  341 (408)
Q Consensus       262 ~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~  341 (408)
                      .++.  +.... .+     ++.+.+...+. + .+..-++.+++++++||..|+++|++.+.++   +++  ++.+|++.
T Consensus       155 i~~~--~~~~~-l~-----p~~~~~~L~~~-~-~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~--~~~~k~i~  219 (403)
T PRK15132        155 IFLV--VMLAL-MM-----PHIHKVNLLTL-P-LQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNI--RKLRWVFI  219 (403)
T ss_pred             HHHH--HHHHH-HH-----HhcCHHHHhcC-C-ccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCH--HHHHHHHH
Confidence            2221  11110 01     11111101000 0 0111378999999999999999999999995   233  34569999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 015344          342 VAYLFIAMCLFPVAIGGFWAYG  363 (408)
Q Consensus       342 ~s~~i~~~~Y~~vgi~GYlaFG  363 (408)
                      ++..+..++|+..-......-+
T Consensus       220 ~Gs~i~li~yl~W~~~~lg~l~  241 (403)
T PRK15132        220 IGSAIPLVAYIFWQLATLGSID  241 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999877555544433

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.46  E-value=4.8e-12  Score=128.79  Aligned_cols=244  Identities=14%  Similarity=0.132  Sum_probs=151.4

Q ss_pred             HHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHH
Q 015344          111 FHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFP  190 (408)
Q Consensus       111 f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~  190 (408)
                      +.+..+.||+|+|+||......|.++.++++++++.+.+|+...|.|..... .+...+|.+++++.|||+|+.+..+..
T Consensus        26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~-~~~~~~i~~v~~~~lG~~g~~i~~ilY  104 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG-SNPSGNITETVEEHFGKTGGVVITFLY  104 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence            7888999999999999999999999999999999999999999999875432 133468999999999999888776644


Q ss_pred             HHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHHHHHHHHHHHHH
Q 015344          191 TVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSLIGAITAVTYST  268 (408)
Q Consensus       191 ~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~i~~~~~l~y~~  268 (408)
                      .+. .+..+.+|.....+.+++++....+.    ...++....+++.+++.....  -+-+.++..+-+...+.++....
T Consensus       105 ff~-ly~ll~aY~~~itn~l~sfl~~ql~~----~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~  179 (443)
T PRK13629        105 FFA-ICPLLWIYGVTITNTFMTFWENQLGF----APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLIS  179 (443)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhhcCc----CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 48889999988888887765433210    122222222232222211111  12233333333333222221111


Q ss_pred             hheeeeeecCCCCCCCCCCC---CCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC---CCC--ccccchhh
Q 015344          269 MVWVLSVSQPRPPNISYEPL---SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK---HPA--HVPMWRGA  340 (408)
Q Consensus       269 ii~~~~i~~g~~~~~~~~~~---~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~---~P~--~~~m~k~v  340 (408)
                      +.  + +-+=..++....+.   ...........+..++|+++|||..|+.++++...+|+.-+   +++  +++.+|++
T Consensus       180 ~~--L-iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii  256 (443)
T PRK13629        180 LS--L-IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII  256 (443)
T ss_pred             HH--H-HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence            11  0 10000001100000   00000011235788999999999999999999999653211   223  45677899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Q 015344          341 KVAYLFIAMCLFPVAIGGFWAYG  363 (408)
Q Consensus       341 ~~s~~i~~~~Y~~vgi~GYlaFG  363 (408)
                      .++..+..++|+..-+.....-+
T Consensus       257 ~~gs~i~lv~y~fwv~S~~gsLs  279 (443)
T PRK13629        257 SRASMLMVAVVMFFAFSCLFTLS  279 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999887666655544

>TIGR00814 stp serine transporter

Probab=99.42  E-value=8.2e-12  Score=126.99  Aligned_cols=244  Identities=12%  Similarity=0.096  Sum_probs=153.4

Q ss_pred             HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHH
Q 015344          109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL  188 (408)
Q Consensus       109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~  188 (408)
                      =.+.+..+.+|+|+|+||...++.||+..++..++...+.+++..++.|.....+. ...++.|++++.|||++|+++.+
T Consensus         8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G~ii~~   86 (397)
T TIGR00814         8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWGILITL   86 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHHHHHHH
Confidence            35778889999999999999999999988888888888888888888886432111 13589999999999999998887


Q ss_pred             HHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH-HhccCCCchhhHHHHHHHHHHHHHHH
Q 015344          189 FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI-VLSQLPNLNSIAGLSLIGAITAVTYS  267 (408)
Q Consensus       189 ~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i-~L~~l~~l~~L~~vS~i~~~~~l~y~  267 (408)
                      ...++. +..+.+|....++.+..++......     +. ...+.+.+..+.+ ........+.+.+++-+-....+...
T Consensus        87 lY~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~-----~~-p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l  159 (397)
T TIGR00814        87 LYFFAI-YPILLIYSVAITNDSASFLVNQLGT-----AP-PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL  159 (397)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-----CC-cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            655555 7788999998888888876543211     11 1222221111111 12223355555555533322111111


Q ss_pred             HhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC--ccccchhhHHHHH
Q 015344          268 TMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA--HVPMWRGAKVAYL  345 (408)
Q Consensus       268 ~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~--~~~m~k~v~~s~~  345 (408)
                      ++.....+.+-+.++....|   . ....+.++..++++.+|||.+|.+++++....|...++|+  +++.+|++..+..
T Consensus       160 ~~l~~~lip~~~~~~L~~~p---~-~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~  235 (397)
T TIGR00814       160 VLLSLYLIPHWNGANLTTFP---S-FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASL  235 (397)
T ss_pred             HHHHHHHHHHcCHHHHhcCC---c-ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            11111111111111111001   0 1113567899999999999999999999844421112233  4456688999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 015344          346 FIAMCLFPVAIGGFWAYGN  364 (408)
Q Consensus       346 i~~~~Y~~vgi~GYlaFG~  364 (408)
                      +.+++|+..-+......+.
T Consensus       236 i~~~~y~~~~~s~~~~l~~  254 (397)
T TIGR00814       236 ILVATVMFFVFSCVLSLSP  254 (397)
T ss_pred             HHHHHHHHHHHHHhccCCH
Confidence            9998888877666666653

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.08  E-value=7.5e-09  Score=103.81  Aligned_cols=237  Identities=14%  Similarity=0.161  Sum_probs=143.5

Q ss_pred             CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344          103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL  182 (408)
Q Consensus       103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~  182 (408)
                      +-|.+|.++.++..++|+|++.+|...++.+--.+.+..++.+++.....+++.+.....++   .+..|..++++||+.
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~   78 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKIL   78 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHH
Confidence            56789999999999999999999998776554556677778888888888888887765443   268899999999998


Q ss_pred             hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH-HHHHhccCCCchhhHHHHHHHHH
Q 015344          183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS-LCIVLSQLPNLNSIAGLSLIGAI  261 (408)
Q Consensus       183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~-v~i~L~~l~~l~~L~~vS~i~~~  261 (408)
                      |+++.+...++. +..+....-..++.+.    ....+       ++..|.+.... +.......+.++.+++++.+-..
T Consensus        79 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~-------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~  146 (359)
T TIGR00912        79 GRLLSILFILYF-FLIAAYLIRIFADFIK----TYLLP-------RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI  146 (359)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC-------CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            988776544332 2222222222222222    21111       12233332211 11122234577777777765543


Q ss_pred             HHHHH-HHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHH-HHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 015344          262 TAVTY-STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNAL-GIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG  339 (408)
Q Consensus       262 ~~l~y-~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~al-gii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~  339 (408)
                      ..+.. .++.......+.+..+  ..|..    ..++.++..+. ....++|.+...+..+..++    ++|++  ..|+
T Consensus       147 ~~i~~~~~il~~~~~~~~~~~~--l~P~~----~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~  214 (359)
T TIGR00912       147 IFLILFILVLILLAPKLGNIKN--LLPVL----ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKS  214 (359)
T ss_pred             HHHHHHHHHHHHHhcccccHHH--ccCcc----ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHH
Confidence            32222 1111111111111111  11221    12334555544 37889998888888888888    34544  5589


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015344          340 AKVAYLFIAMCLFPVAIGGFWAYGNLV  366 (408)
Q Consensus       340 v~~s~~i~~~~Y~~vgi~GYlaFG~~v  366 (408)
                      ...+..+++++|..+-+.....+|.+.
T Consensus       215 ~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       215 IIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            999999999999988888888887543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.99  E-value=4.7e-08  Score=100.71  Aligned_cols=240  Identities=12%  Similarity=0.016  Sum_probs=131.7

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      ++|+-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.+.......|.....+.  .......+++.+|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G   80 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFG   80 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcC
Confidence            46788999999999999999999999998888886 46666777777766666666665432222  2245566779999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSL  257 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~  257 (408)
                      ++.+.+..+...+.. .-...++.+...+.+..++.    .  ....  ...+.+...+ ++++.  -.+..+..+++..
T Consensus        81 ~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~~~~----~--~~~~--~~~~~~~~~~-l~~~~~ln~~g~~~~~~i~~  150 (438)
T PRK10655         81 KSGNFMANYTYGVSL-LIANVAIAISAVGYGTELFG----A--TLSP--VQICLATIGV-LWLCTVANFGGARITGQISS  150 (438)
T ss_pred             cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc----c--ccch--HHHHHHHHHH-HHHHHHHHHhCHHHHHHHHH
Confidence            988876665432222 11122222222223222221    0  0001  1122211111 11111  1223333344333


Q ss_pred             HHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344          258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW  337 (408)
Q Consensus       258 i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~  337 (408)
                      +.....+.-.+++.+..+......+  +.+.........+.++..++....|+|.|-.....+-+|+    |+|+| ++.
T Consensus       151 i~~~~~l~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP  223 (438)
T PRK10655        151 VTVWGVIIPVVGLSIIGWFWFSPSL--YVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVP  223 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccc--ccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-ccc
Confidence            2222111111111111111111111  1110001111123567778889999999999999999999    57865 366


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 015344          338 RGAKVAYLFIAMCLFPVAIGGF  359 (408)
Q Consensus       338 k~v~~s~~i~~~~Y~~vgi~GY  359 (408)
                      |++..+..++.++|+.......
T Consensus       224 rAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        224 IAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988755433

>TIGR00909 2A0306 amino acid transporter

Probab=98.90  E-value=1.5e-07  Score=96.63  Aligned_cols=243  Identities=15%  Similarity=0.095  Sum_probs=140.8

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++.++..++.++|+|++.+|.... ..|. ..++..++.+++.......+.|.....++.  ....+..++.+|
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G   78 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG   78 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence            467899999999999999999999995544 4454 355556666777766667777765443332  234455678899


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCC---CCCCC--CCcchHHH-HHHHHHHHHhccCCCchhhH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGP---LCSSN--PLTTVEWY-LVFTSLCIVLSQLPNLNSIA  253 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~---~~~~~--~l~~~~~~-ii~~~v~i~L~~l~~l~~L~  253 (408)
                      |+.+.+..+...+.. ...+.++....++.+..++.....+   .+...  +.....+. +++..++..+ -.+..+..+
T Consensus        79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~~g~~~~~  156 (429)
T TIGR00909        79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYI-LYLGAKESG  156 (429)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHH-HHhCcHHHH
Confidence            998887766543332 3334445555566666555421100   00000  00000011 1111111122 234556666


Q ss_pred             HHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344          254 GLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH  333 (408)
Q Consensus       254 ~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~  333 (408)
                      +++.+.....+...++.++..+.+....  ++++.    ....+.++..++...+|+|.|........+|+    |||+|
T Consensus       157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r  226 (429)
T TIGR00909       157 KVNDILVVLKVAALLLFAALGAIHFASN--NYTPF----MPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER  226 (429)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCCC----CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc
Confidence            6665544333322211111122121111  22211    12245678888999999999999999999999    57754


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHH
Q 015344          334 VPMWRGAKVAYLFIAMCLFPVAIGGF  359 (408)
Q Consensus       334 ~~m~k~v~~s~~i~~~~Y~~vgi~GY  359 (408)
                       +..|++..+..++.++|+.+.....
T Consensus       227 -~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       227 -DIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHh
Confidence             3569999999999999998865443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.90  E-value=2.1e-07  Score=96.94  Aligned_cols=244  Identities=12%  Similarity=0.019  Sum_probs=132.9

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.+++++..+++++|+|++.+|...++.|-. ..++..++.+++.+.......|.....|.+ .....+.+++.+|
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G   84 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG   84 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence            56799999999999999999999999887765522 234445556665555555666655433331 1244556689999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLI  258 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i  258 (408)
                      |+.+....+...+.. .....++.....+.+..+++....     .. ....+.....++ .+.+.-.+..+..+++..+
T Consensus        85 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~-----~~-~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~  157 (473)
T TIGR00905        85 PYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFPLFGS-----GN-PVPSILGASVLLWVFTFLVLRGVRQAAFINTI  157 (473)
T ss_pred             cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcC-----CC-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            998887766443222 222334444444444444331110     00 111121111111 1111123455555555544


Q ss_pred             HHHHHHHHHH--hheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344          259 GAITAVTYST--MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM  336 (408)
Q Consensus       259 ~~~~~l~y~~--ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m  336 (408)
                      ..+..+.-.+  ++..+...++.....++.+...+.....+.++..++....|+|.|-.....+-+|+|    |  +|..
T Consensus       158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k----~--~r~i  231 (473)
T TIGR00905       158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK----N--KSDV  231 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----c--cccc
Confidence            3322111111  111110111111001111000000112345778888999999999999999999994    4  3446


Q ss_pred             chhhHHHHHHHHHHHHHHHHHH
Q 015344          337 WRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       337 ~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      .|++..+..++.++|+......
T Consensus       232 Prai~~~~~i~~~~Yil~~~~~  253 (473)
T TIGR00905       232 GKATVLGTLGALVIYILITLLS  253 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999998876553

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.89  E-value=1.5e-07  Score=96.98  Aligned_cols=240  Identities=11%  Similarity=0.089  Sum_probs=130.8

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      ++|+-+.++.+...+.++||+|++.+|...++.|-. .++..++.++..+.......|.....|...  ...+.+++ +|
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~g   78 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-IS   78 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-HC
Confidence            468899999999999999999999999999988753 445555555555555555555544333221  44444566 79


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLI  258 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i  258 (408)
                      +.++....+.......++ ..++.+...+.+..++..     .. .+.  ..+.+...++ .+.+.-++..+..+.+..+
T Consensus        79 ~~~gf~~gw~~~~~~~~~-~~~~~~~~~~y~~~~~p~-----~~-~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i  149 (435)
T PRK10435         79 PAFGFQTGVLYYHANWIG-NLAIGITAVSYLSTFFPV-----LN-DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTI  149 (435)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-----cC-ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            988776655322111112 223333333343333221     10 111  1111111111 1111112334444444433


Q ss_pred             HHHHHHHHHHhheeeeeecCCCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344          259 GAITAVTYSTMVWVLSVSQPRPPN--ISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM  336 (408)
Q Consensus       259 ~~~~~l~y~~ii~~~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m  336 (408)
                      ..+..+...+...+.........+  .++.    .....+..++..++....|+|.|-..+-..-+|+    |||+| .+
T Consensus       150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~i  220 (435)
T PRK10435        150 GLVLVLIPVVGTAIVGWHWFDAATYAANWN----TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TV  220 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHhhccccc----CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cc
Confidence            322211111111111111111111  1111    1112345788999999999999999999999999    57854 35


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHh
Q 015344          337 WRGAKVAYLFIAMCLFPVAIGGFWA  361 (408)
Q Consensus       337 ~k~v~~s~~i~~~~Y~~vgi~GYla  361 (408)
                      .|++..+..++.++|+...+.....
T Consensus       221 PrAi~~~~~iv~ilYil~~~~~~~~  245 (435)
T PRK10435        221 PLATMLGTGLAGIIYIAATQVISGM  245 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6999999999999999886654433

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.86  E-value=3.6e-07  Score=90.38  Aligned_cols=235  Identities=17%  Similarity=0.229  Sum_probs=137.3

Q ss_pred             CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344          103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL  182 (408)
Q Consensus       103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~  182 (408)
                      |-|.+|..+.+....+|+|++.+|...++.+- .|.+..++.++....-.+++.+..+..++   .+..|+.++.+||+.
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~~Gk~l   76 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKLFGKWL   76 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhCcHH
Confidence            35778999999999999999999988766641 33344444455555555555555443333   389999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH-HHHHhccCCCchhhHHHHHHHHH
Q 015344          183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS-LCIVLSQLPNLNSIAGLSLIGAI  261 (408)
Q Consensus       183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~-v~i~L~~l~~l~~L~~vS~i~~~  261 (408)
                      |+.+.....++. +......+-..++.++    ..-.+       ++..|.+.... +.......+.++.+++.+.+-..
T Consensus        77 g~ii~~~~~l~~-l~~~~~~lr~~~~~i~----~~~lp-------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~  144 (320)
T PF03845_consen   77 GKIINLLYILYF-LLISALVLREFSEFIK----TYLLP-------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFP  144 (320)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC-------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            988766443332 2222111222222222    11111       13344433222 22222335678888875544433


Q ss_pred             HHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhH
Q 015344          262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAK  341 (408)
Q Consensus       262 ~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~  341 (408)
                      ..+...+++......+     .+++...+. ...++.+++.+.-...+.|.+-..+.-+...+    ++|++  ..|...
T Consensus       145 ~~~i~~~~i~~~~~~~-----~~~~~l~P~-~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~--~~k~~~  212 (320)
T PF03845_consen  145 IFLILLLLILLLSIPN-----IDWDNLLPV-LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKK--LKKSLL  212 (320)
T ss_pred             HHHHHHHHHHHHhccc-----CCHHHeeCc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchH--HHHHHH
Confidence            2222222222222222     222211111 12356678888888888898888888888888    34544  448888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Q 015344          342 VAYLFIAMCLFPVAIGGFWAYGNL  365 (408)
Q Consensus       342 ~s~~i~~~~Y~~vgi~GYlaFG~~  365 (408)
                      .+..+...+|...-+.....||.+
T Consensus       213 ~~~~~~~~~~~~~~~~~i~vfG~~  236 (320)
T PF03845_consen  213 IAILISGLFLLFIIFITIGVFGPE  236 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH
Confidence            888888888888878888888854

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.80  E-value=7e-07  Score=92.43  Aligned_cols=238  Identities=13%  Similarity=0.166  Sum_probs=134.9

Q ss_pred             cccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344           99 TESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA  177 (408)
Q Consensus        99 ~~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~  177 (408)
                      +.+|+-+.++..+..+.++||+|++.+| .+.+.+|-. +++..++.+++.+.....+.|.....+..  ..+.+.+++.
T Consensus         9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~   85 (452)
T TIGR01773         9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDA   85 (452)
T ss_pred             hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Confidence            3467889999999999999999999999 778888864 66777777777776677777765433332  2677788999


Q ss_pred             hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH--HHHHhccCCCchhhHHH
Q 015344          178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS--LCIVLSQLPNLNSIAGL  255 (408)
Q Consensus       178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~--v~i~L~~l~~l~~L~~v  255 (408)
                      +|+.++....+...+.. ...+.+.....++.+..++     +     ..  ..|.+...+  +...+- +...+..+++
T Consensus        86 ~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~-----~-----~~--~~~~~~~~~~~~~~~~n-~~gv~~~~~~  151 (452)
T TIGR01773        86 IGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQYWF-----P-----DI--PLWLFSLILTIVLTLTN-LYSVKSYGEF  151 (452)
T ss_pred             hCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-----C-----cC--cHHHHHHHHHHHHHHHH-HHhcchhhHH
Confidence            99988877665433322 2223333333443333221     1     11  233322211  111111 1223333333


Q ss_pred             HHHHHHHH----HHHHHhheeeeeecCCCC--CCCCCCCCCCC--CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344          256 SLIGAITA----VTYSTMVWVLSVSQPRPP--NISYEPLSSAS--PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST  327 (408)
Q Consensus       256 S~i~~~~~----l~y~~ii~~~~i~~g~~~--~~~~~~~~~~~--~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~  327 (408)
                      ..+..+.-    +.++++.+.. ...+...  ...+.+..+..  .+..+.++..++....|+|.|...+..+-+|+   
T Consensus       152 ~~~~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~---  227 (452)
T TIGR01773       152 EFWFALIKVIAIIAFIILGAVA-IFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES---  227 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh---
Confidence            22221111    1111111100 1111110  00111111111  12244578899999999999999999999999   


Q ss_pred             CCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344          328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF  359 (408)
Q Consensus       328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY  359 (408)
                       |||+| ...|++..+...+.++|+.......
T Consensus       228 -k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       228 -SNPIK-SITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             -cChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence             57865 3568887777788888887644333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11021 putative transporter; Provisional

Probab=98.80  E-value=1.3e-06  Score=89.36  Aligned_cols=228  Identities=15%  Similarity=0.151  Sum_probs=129.0

Q ss_pred             cHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344          105 NAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG  183 (408)
Q Consensus       105 s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g  183 (408)
                      +.++++...+.++||+|++.+|- +.+.+|- ..++..++.++..........|.....|..  ......+++.+|++++
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~g   78 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLG   78 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhH
Confidence            57889999999999999999994 4556663 456666777777666666677765444432  2556677889999988


Q ss_pred             hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHHHHHH
Q 015344          184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLIGAIT  262 (408)
Q Consensus       184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i~~~~  262 (408)
                      ....+...+....+. .+......+.+..++    ..    ..  ...+.+...++ ++.+.-++..+..+++..+..+.
T Consensus        79 f~~gw~~~~~~~~~~-~~~~~~~~~~~~~~~----~~----~~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~  147 (410)
T PRK11021         79 RVTGWLFLSVIPVGL-PAALQIAAGFGQALF----GW----SS--WQLLLAELLTLALLWLLNLRGASSSANLQTVIALL  147 (410)
T ss_pred             HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHc----CC----CC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            776654332221121 122222222222221    10    01  11121111111 11111233444444444332221


Q ss_pred             HHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHH
Q 015344          263 AVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKV  342 (408)
Q Consensus       263 ~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~  342 (408)
                      .+.  ++.+.  +..+.....++. .. .....++.++..++....|+|.|...+...-+|+    |||+| .+.|++..
T Consensus       148 ~~~--i~~~~--~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~  216 (410)
T PRK11021        148 IVA--LVVAI--WWAGDIKPADIP-FP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMI  216 (410)
T ss_pred             HHH--HHHHH--HHHcCCchhcCC-CC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHH
Confidence            111  11111  111111111111 11 1112356788999999999999999999999999    67865 36699999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015344          343 AYLFIAMCLFPVAIG  357 (408)
Q Consensus       343 s~~i~~~~Y~~vgi~  357 (408)
                      +..++.++|+.+.+.
T Consensus       217 ~~~~~~~lYil~~~~  231 (410)
T PRK11021        217 GLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.79  E-value=6.7e-07  Score=92.43  Aligned_cols=239  Identities=15%  Similarity=0.144  Sum_probs=126.5

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      ++|+-+.++++...++.++|+|++.+|...++.|.. .+...++.++..+.....+.|.....|..  ....+-+++.+|
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~a--GG~y~~~~~~~g   82 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSP--GGSYAYARRCFG   82 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHHHcC
Confidence            457889999999999999999999999888887743 33444444555554455556654333321  133344888999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSL  257 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~  257 (408)
                      +.++.+..+...+....+ ..+......+.+..+++..        . +.....++..++++.+..  +...+...++..
T Consensus        83 ~~~gf~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~  152 (445)
T PRK10644         83 PFLGYQTNVLYWLACWIG-NIAMVVIGVGYLSYFFPIL--------K-DPLVLTITCVVVLWIFVLLNIVGPKMITRVQA  152 (445)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc--------C-CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            988876554332221111 1222222222222222110        0 011111111111111111  223444444443


Q ss_pred             HHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344          258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW  337 (408)
Q Consensus       258 i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~  337 (408)
                      +..+..+.-.++.....+.....+  .+.+.........+.++..++....|+|.|-......-+|+    |||+|. ..
T Consensus       153 i~~~~~~i~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-iP  225 (445)
T PRK10644        153 VATVLALIPIVGIAVFGWFWFRGE--TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VP  225 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCch--hccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCcccc-hh
Confidence            332221111111111111111111  11100001112234567778889999999999999999999    578653 56


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 015344          338 RGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       338 k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      |++..+..+++++|+.+.+.-
T Consensus       226 rai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        226 IATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999886653

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.72  E-value=2.4e-06  Score=90.97  Aligned_cols=249  Identities=12%  Similarity=0.044  Sum_probs=134.9

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAF--AFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA  177 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Af--a~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~  177 (408)
                      -+|+-+.++.+...+..++|+|+..+|-..  +..|-. .++..++.++.++.......|.....|...  +...-++++
T Consensus        26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~~  102 (557)
T TIGR00906        26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYVT  102 (557)
T ss_pred             hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHHH
Confidence            357899999999999999999999999543  457754 455566677776666666666654333221  222233467


Q ss_pred             hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCC------CCCCCCcc--hHHHHHHHHHHHHhccCCCc
Q 015344          178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPL------CSSNPLTT--VEWYLVFTSLCIVLSQLPNL  249 (408)
Q Consensus       178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~------~~~~~l~~--~~~~ii~~~v~i~L~~l~~l  249 (408)
                      +|+.++.+..+...+.... .+.+.....++.+..++.......      .....+..  ..+.+++.++ +.+.-....
T Consensus       103 ~G~~~gfi~GW~~~l~~~~-~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l-~~~ln~~Gi  180 (557)
T TIGR00906       103 VGELWAFITGWNLILEYVI-GTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL-LAVLLSFGV  180 (557)
T ss_pred             hCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH-HHHHHHhch
Confidence            8998887766544332211 122222223344444432110000      00000111  1111111111 111123455


Q ss_pred             hhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCC--CCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344          250 NSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLS--SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST  327 (408)
Q Consensus       250 ~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~--~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~  327 (408)
                      +..+++..+..+..+...++.++..+..+...+.......  ++..+..+.+++.++....|+|.|-..+...-+|+   
T Consensus       181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~---  257 (557)
T TIGR00906       181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV---  257 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence            6666665544333222222222222222222111100000  01112345678999999999999999999999999   


Q ss_pred             CCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344          328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                       |||++ .+.|++..++.+++++|+.+.+.-
T Consensus       258 -knP~r-~iP~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       258 -KNPQR-AIPIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             -cCccc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence             67865 466999999999999999876543

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.65  E-value=4.1e-06  Score=87.26  Aligned_cols=239  Identities=16%  Similarity=0.152  Sum_probs=128.3

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      -+|+.+.++.....+.++||+|++..| .+++++|. ..++..++++++.+....-+.|....  +.+..++.+.+++.+
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~--~~~~~~~~~ya~~~~   94 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS--NLEYKSFSDFASDLL   94 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHh
Confidence            467889999999999999999999987 57888887 35556666666665555555555432  223446778999999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI  258 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i  258 (408)
                      |+..+.+..+...+.. .-...+.....+..+..+    . +     ......+.+++..+...+- +...+..+++..+
T Consensus        95 g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~~----~-p-----~~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~  162 (469)
T PRK11049         95 GPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQFW----F-P-----DLSDWVASLAVVLLLLSLN-LATVKMFGEMEFW  162 (469)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----c-C-----CCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence            9988877766443221 111122222222222211    1 1     1111222222111111111 2223333333322


Q ss_pred             HHHHHHHH--HHhheeee-eecC--CCCCC--CCCCCCCCC--CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          259 GAITAVTY--STMVWVLS-VSQP--RPPNI--SYEPLSSAS--PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       259 ~~~~~l~y--~~ii~~~~-i~~g--~~~~~--~~~~~~~~~--~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                      ..+.-+..  .+++.++. +..+  ...+.  .+.+..+..  .+..+.++..++....|+|.|-..+...-+|+    |
T Consensus       163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----k  238 (469)
T PRK11049        163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----K  238 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----c
Confidence            21111110  01111111 1111  11110  111111111  12245578899999999999999999999999    5


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344          330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      ||++ .+.|++..+...+.++|+...+.-
T Consensus       239 nP~r-~iPrai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        239 DPEK-SLPRAINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             CHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7865 356888766666677777655443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.60  E-value=4.1e-06  Score=87.94  Aligned_cols=244  Identities=9%  Similarity=0.062  Sum_probs=128.9

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA  177 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~  177 (408)
                      -+|+-+.++.....+.+++|+|++..|.. .+++|-. +.++..++.+++.+.......|.....|..  .....-.++.
T Consensus        40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~~  117 (501)
T TIGR00911        40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILEV  117 (501)
T ss_pred             cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHhH
Confidence            35778999999999999999999999865 5556633 122334555555565566666665433321  2344455678


Q ss_pred             hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH
Q 015344          178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL  255 (408)
Q Consensus       178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v  255 (408)
                      +|+.++.+..+........+.+..+.+..++.+..   ....+ +   ........++...+++++.  -....+...++
T Consensus       118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~~~-~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~  190 (501)
T TIGR00911       118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVFPD-C---EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV  190 (501)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC-C---CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99987776655332211122333333333333211   11111 1   0011111111111111111  13344555554


Q ss_pred             HHHHHHHHHHHHHhheeee---eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344          256 SLIGAITAVTYSTMVWVLS---VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA  332 (408)
Q Consensus       256 S~i~~~~~l~y~~ii~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~  332 (408)
                      ..+..+..+...++.++..   +..+...+.+.+..... ...+..++..++....|+|.|-..+..+.+|+    |+|+
T Consensus       191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~  265 (501)
T TIGR00911       191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEG-TETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPY  265 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCC-CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCch
Confidence            4433322221111111111   11222111111100001 11235678889999999999999999999999    5786


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHH
Q 015344          333 HVPMWRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       333 ~~~m~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      + ...|++..+..++.++|+.+.+.-
T Consensus       266 r-~iPrAi~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       266 R-TLPIAIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 356999999999999999885544

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.58  E-value=4.6e-06  Score=86.15  Aligned_cols=236  Identities=12%  Similarity=0.095  Sum_probs=123.3

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCC-ccCCHHHHHHHH
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGK-RYNRYVELAQAA  177 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~-r~~sY~el~~~~  177 (408)
                      +|+-+.++.....+..++|+|++..|.. .+..|-. ..++..++.+++.+.......|.....|.. ....|   .++.
T Consensus         7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~   83 (445)
T PRK11357          7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNA   83 (445)
T ss_pred             cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHh
Confidence            5788999999999999999999999975 4455633 234445556666665565566654332221 11234   4577


Q ss_pred             hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH
Q 015344          178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL  255 (408)
Q Consensus       178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v  255 (408)
                      +|+.++....+.............+.+..++.+...    . +    .  ....+.++...+.+.+.  -.+..+..+++
T Consensus        84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~----~-~----~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v  152 (445)
T PRK11357         84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL----T-P----I--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAF  152 (445)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C----C--chHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            999877666554322111112223333333333221    1 1    0  01111111111111111  12334434444


Q ss_pred             HHHHHHHHHHHH--HhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344          256 SLIGAITAVTYS--TMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH  333 (408)
Q Consensus       256 S~i~~~~~l~y~--~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~  333 (408)
                      ..+..+..+.-.  ++++++....+.  +..............+.++..++....|+|.|-.....+.+|+    |||+|
T Consensus       153 ~~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r  226 (445)
T PRK11357        153 QTLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK  226 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc
Confidence            333222211111  111111111211  1000000000111124577888999999999999999999999    67875


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHH
Q 015344          334 VPMWRGAKVAYLFIAMCLFPVAIG  357 (408)
Q Consensus       334 ~~m~k~v~~s~~i~~~~Y~~vgi~  357 (408)
                       .+.|++..++.+++++|+.+...
T Consensus       227 -~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        227 -TMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHH
Confidence             35699999999999999887553

>PRK10249 phenylalanine transporter; Provisional

Probab=98.57  E-value=7.2e-06  Score=85.20  Aligned_cols=236  Identities=16%  Similarity=0.122  Sum_probs=130.3

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++..+..+..+||+|++.+| .+.+++|- ..++..++.+++.+..+.-+.|.....+..  ..+.+.+++.+|
T Consensus        20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~--Gg~~~y~~~~~g   96 (458)
T PRK10249         20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS--GSFAHFAYKYWG   96 (458)
T ss_pred             hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhC
Confidence            46788899999999999999999988 55666675 466667777777777777777765544332  367778899999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG  259 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~  259 (408)
                      +.++....+...+.. .....+.....+..+..+    . +     ......+.+++..+...+- +...+..+++..+.
T Consensus        97 ~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~~----~-~-----~~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~  164 (458)
T PRK10249         97 PFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQYW----F-P-----DVPTWIWAAAFFIIINAVN-LVNVRLYGETEFWF  164 (458)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----C-C-----cCcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHH
Confidence            988877766432221 111222222222222211    1 1     1111122222211111111 22333333322111


Q ss_pred             H---HHHHH-HHHhheeeeeecCCC-CCCCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344          260 A---ITAVT-YSTMVWVLSVSQPRP-PNISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA  332 (408)
Q Consensus       260 ~---~~~l~-y~~ii~~~~i~~g~~-~~~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~  332 (408)
                      .   +..+. ..++.+.+ +..+.. +..+++...+  ...+..+.++..++....|+|.|-..+...-+|+    |+|+
T Consensus       165 ~~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~  239 (458)
T PRK10249        165 ALIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPE  239 (458)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHh
Confidence            1   11111 11111100 111111 1111110000  1112356678899999999999999999999999    5776


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHH
Q 015344          333 HVPMWRGAKVAYLFIAMCLFPVAIG  357 (408)
Q Consensus       333 ~~~m~k~v~~s~~i~~~~Y~~vgi~  357 (408)
                      + .+.|++..+...+.++|+...+.
T Consensus       240 k-~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        240 K-SIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 36689998888888888775443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.56  E-value=7.1e-06  Score=85.41  Aligned_cols=246  Identities=14%  Similarity=0.043  Sum_probs=127.5

Q ss_pred             CCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344          102 RNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE  180 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~  180 (408)
                      |+-+.++.+...+.++||+|++.+|...+ .+|....++..++.++..+.......|.....|... ....+.+++.||+
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~   79 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP   79 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence            46788999999999999999999997644 555333344456666666666666666554333211 1344558899999


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSLI  258 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~i  258 (408)
                      ..|.+..+...+....+ ..+|.....+.+..+++...      ...+...+.+.. ++++.+.  -.+..+..+++..+
T Consensus        80 ~~gf~~gw~~w~~~~~~-~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~-~~~~~~~~ln~~Gv~~~~~i~~i  151 (468)
T TIGR03810        80 FMGFISAWGYWLSAWLG-NVAYATLLFSTLGYFFPIFG------GGNNPPSIIGAS-VLLWCVHFLVLRGVEGAAFINTI  151 (468)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccc------CCCcHHHHHHHH-HHHHHHHHHHHhCHHHHHHHHHH
Confidence            88877665432221111 23333333333332221110      011111122111 1111111  13445555554443


Q ss_pred             HHHHHHHHH--HhheeeeeecCCCCCCC-CCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344          259 GAITAVTYS--TMVWVLSVSQPRPPNIS-YEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV  334 (408)
Q Consensus       259 ~~~~~l~y~--~ii~~~~i~~g~~~~~~-~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~  334 (408)
                      ..+.-+.-.  +++......++..-..+ ++...+ ......+.++..++....|+|.|-.....+-+|.|    +  +|
T Consensus       152 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k----~--~k  225 (468)
T TIGR03810       152 TTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE----K--RS  225 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc----C--cc
Confidence            322211110  11111111111110001 000000 00111234566888899999999998888888883    3  34


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 015344          335 PMWRGAKVAYLFIAMCLFPVAIGGFWAY  362 (408)
Q Consensus       335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaF  362 (408)
                      .+.|++..+..+++++|+.+.+..+...
T Consensus       226 ~ip~ai~~~~~~v~~lY~l~~~~~~g~~  253 (468)
T TIGR03810       226 DVGKATVIGLIGVLAIYVLVSVLSYGIM  253 (468)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            4669999999999999998876655443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.54  E-value=1.2e-05  Score=83.76  Aligned_cols=237  Identities=12%  Similarity=0.131  Sum_probs=131.5

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+.+.++..+..+..+||+|++..| .+.+.+|-...++..++.+++.+....-+.|.....+. ....|.+.+++.+|
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g   79 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVD   79 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcC
Confidence            36778899999999999999999977 66777774433555666666666666667776544431 12368888999999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG  259 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~  259 (408)
                      +.++....+...+.. ...+.+.....+..+..     ..+     ......|..++.++...+- +...+..+++..+.
T Consensus        80 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~in-~~gv~~~~~~~~~~  147 (478)
T TIGR00913        80 PAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-----WTD-----KVNPAVWIAIFYVFIVIIN-LFGVKGYGEAEFWF  147 (478)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----cCC-----CCCHHHHHHHHHHHHHHHH-HhcchHHHHHHHHH
Confidence            998877665433221 11222233333333221     111     1122334332222111111 23334444433222


Q ss_pred             HH----HHHHHHHhheeeeeecCCCCC--CC---CC---CCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344          260 AI----TAVTYSTMVWVLSVSQPRPPN--IS---YE---PLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST  327 (408)
Q Consensus       260 ~~----~~l~y~~ii~~~~i~~g~~~~--~~---~~---~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~  327 (408)
                      .+    ..+.+.++.+.. +..+....  ..   +.   ...+......+.++..++....|+|.|-..+..+-+|+   
T Consensus       148 ~~~ki~~l~~~ii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~---  223 (478)
T TIGR00913       148 SSIKILAIIGFIILSIIL-NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA---  223 (478)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh---
Confidence            11    111111111111 11111000  00   00   00000001125678888999999999999999999999   


Q ss_pred             CCCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344          328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAI  356 (408)
Q Consensus       328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi  356 (408)
                       |||+| .+.|++..+..++.++|+...+
T Consensus       224 -knP~r-~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       224 -ANPRK-SIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             -cChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence             57865 4679999999999999998654

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.54  E-value=1.9e-05  Score=81.92  Aligned_cols=236  Identities=14%  Similarity=0.145  Sum_probs=128.1

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      -+|+-+.++..+..+..++|+|++.+|.. .+.+|- ..++..++.+++.+....-+.|.....+..  ....+.+++.+
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~   83 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQENL   83 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHc
Confidence            35778999999999999999999999854 666775 356777777777777777777776444332  25556778999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI  258 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i  258 (408)
                      ||.++.+..+...+.. ...+.+.....+..+..+    . +     ......|.+++.++...+ -+...+..+.+..+
T Consensus        84 G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~  151 (457)
T PRK10580         84 GPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGVW----F-P-----TVPHWIWVLSVVLIICAV-NLMSVKVFGELEFW  151 (457)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----C-C-----CCChHHHHHHHHHHHHHH-HHccchhHHHHHHH
Confidence            9988877766433221 111111112222222111    1 1     111223322222111111 12233333333321


Q ss_pred             HHH---HHH-HHHHh---heeeeeecC-CCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          259 GAI---TAV-TYSTM---VWVLSVSQP-RPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       259 ~~~---~~l-~y~~i---i~~~~i~~g-~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                      ..+   ..+ ...++   +........ ...+.+.. ... ...+..+.++..++....|+|.|...+...-+|+    |
T Consensus       152 ~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----k  226 (457)
T PRK10580        152 FSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNL-WSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----K  226 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-CCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----c
Confidence            111   111 11110   000111111 11111100 000 1112345578889999999999999999999999    5


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHH
Q 015344          330 HPAHVPMWRGAKVAYLFIAMCLFPVAI  356 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi  356 (408)
                      +|+|. ..|++..+...+.++|+....
T Consensus       227 nP~k~-iPrAi~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        227 DPEKS-IPRAINSVPMRILVFYVGTLF  252 (457)
T ss_pred             ChhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            78753 558887777777777766643

>TIGR00908 2A0305 ethanolamine permease

Probab=98.53  E-value=1.3e-05  Score=82.76  Aligned_cols=236  Identities=14%  Similarity=0.060  Sum_probs=126.6

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE  180 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~  180 (408)
                      +|+-+.++.....+..++|....+.+.+++..|+..-++..++.+++.......+.|.....+..  ......+++.+|+
T Consensus         6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G~   83 (442)
T TIGR00908         6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFGP   83 (442)
T ss_pred             hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhCc
Confidence            46788888988888888985555668889999986444444555555555555566665443332  2555677899999


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA  260 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~  260 (408)
                      .++.+..+...+.. .....++....++.+..+++    +      .....+.+++..+...+- +...+..+++..+..
T Consensus        84 ~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~~p----~------~~~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~~~  151 (442)
T TIGR00908        84 WGGFLAGTAILIEF-AFAPPAIACFIGAYCESLFP----V------GPGWLAALVFYIVFIGIN-ILGVGEAAKLEFVVT  151 (442)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc----c------CchhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHH
Confidence            88876655433222 22333445555555544321    1      111111211111111111 223333333333222


Q ss_pred             HHHHHHHHhheeeeeecCCCCCC---CCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344          261 ITAVTYSTMVWVLSVSQPRPPNI---SYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW  337 (408)
Q Consensus       261 ~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~  337 (408)
                      +..+...++.++....+....+.   ++.+. .......+.+++.++...+|+|.|...+...-+|+    |||++. ..
T Consensus       152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-ip  225 (442)
T TIGR00908       152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGA-SSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKRD-IP  225 (442)
T ss_pred             HHHHHHHHHHHHHHhccCCHHHhccCCccCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc-cC
Confidence            11111111111110101000010   00000 01112234578888889999999999999999999    578653 56


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 015344          338 RGAKVAYLFIAMCLFPVAI  356 (408)
Q Consensus       338 k~v~~s~~i~~~~Y~~vgi  356 (408)
                      |++..+..++..+|+.+..
T Consensus       226 rai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       226 RGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8999888888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.52  E-value=9.3e-06  Score=91.15  Aligned_cols=248  Identities=13%  Similarity=0.089  Sum_probs=139.7

Q ss_pred             ccCCCcHHHHHHHH-Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh-cCCCccCCHHHHHHH
Q 015344          100 ESRNGNAHYAAFHN-LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA-VPGKRYNRYVELAQA  176 (408)
Q Consensus       100 ~~r~~s~~~a~f~l-~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~-~~g~r~~sY~el~~~  176 (408)
                      +.++-+++.+++.- +..++|+|+.- +++...++|...+++++++.+++++.|..-+.+...+ .+  +.-.-.....+
T Consensus        74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p--~aGG~Y~yisr  151 (953)
T TIGR00930        74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVV--KGGGAYYLISR  151 (953)
T ss_pred             CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHH
Confidence            34577778888877 99999999977 5588889998778888899999998888877776543 11  11122234567


Q ss_pred             HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCc-chHHHHHHHHHHHHhccCCCchhhHHH
Q 015344          177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLT-TVEWYLVFTSLCIVLSQLPNLNSIAGL  255 (408)
Q Consensus       177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~-~~~~~ii~~~v~i~L~~l~~l~~L~~v  255 (408)
                      +||+..|..+.++..+.. ...+..|.+-.++.+..++...+.... ..... .+.+.+++.+++..+. +...+..+++
T Consensus       152 alGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~~~~~~~~-~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~  228 (953)
T TIGR00930       152 SLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLRENGSKIM-VDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA  228 (953)
T ss_pred             HhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            899987777666544333 445566777777776666542211000 00111 1222222211111122 2233333333


Q ss_pred             HHHHHHHHHHHHHhheeeeeecC-CCCCC---CCC--CCCCC--CCc-CcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344          256 SLIGAITAVTYSTMVWVLSVSQP-RPPNI---SYE--PLSSA--SPA-ATVFSVMNALGIIAFAFRGHNLAMEIQATMPS  326 (408)
Q Consensus       256 S~i~~~~~l~y~~ii~~~~i~~g-~~~~~---~~~--~~~~~--~~~-~~~~~~~~algii~FAf~~h~vv~~I~~~M~~  326 (408)
                      ..+-.+..++-.+++++..+... ..+..   .++  .+.+.  ... ....+++..++++.+||.|......+-+|+  
T Consensus       229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl--  306 (953)
T TIGR00930       229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL--  306 (953)
T ss_pred             HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            33222211111111111111111 00000   000  00000  000 111237778888889999999999999999  


Q ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 015344          327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIG  357 (408)
Q Consensus       327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~  357 (408)
                        |+|++ .+.|++..++.+++++|+.+.++
T Consensus       307 --KnP~r-~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       307 --KDPQK-AIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             --cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence              67875 46799999999999999998753

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.52  E-value=1.2e-05  Score=83.89  Aligned_cols=238  Identities=14%  Similarity=0.130  Sum_probs=126.2

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++.....+..+||+|+..+|- +.+.+|-...++..++.+++.+....-+.|.....+..  -.+...+++.+|
T Consensus        13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a--GG~y~y~~~~~g   90 (471)
T PRK11387         13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET--GAFHVYAARYLG   90 (471)
T ss_pred             hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHhcC
Confidence            577899999999999999999998884 46777754345556667776666666667765444332  256678888999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG  259 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~  259 (408)
                      +.++....+...+.. ...+.......+..+.    . ..+     ......+.+++.+++..+. +...+..+.+..+.
T Consensus        91 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~-~~p-----~~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~  158 (471)
T PRK11387         91 PATGYTVAWLYWLTW-TVALGSSLTAAGFCMQ----Y-WFP-----QVPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWF  158 (471)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----h-ccC-----cCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence            987766555432221 1111111111121111    1 111     1111122222222111111 22233333222111


Q ss_pred             ----HHHHHHHHHhhee--eeee---cCCCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          260 ----AITAVTYSTMVWV--LSVS---QPRPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       260 ----~~~~l~y~~ii~~--~~i~---~g~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                          .+..+.+.++.+.  ....   .+... ..++.... ...+....++..++...+|+|.|-..+...-+|+    |
T Consensus       159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----k  233 (471)
T PRK11387        159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPA-PGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----E  233 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----c
Confidence                1111111111000  0000   01000 00110000 0001234567888888999999999999999999    6


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344          330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      ||++ .+.|++..+..++.++|+...+..
T Consensus       234 nP~r-~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        234 NPAK-VIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             Chhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7865 467899988888888898876543

>PRK15049 L-asparagine permease; Provisional

Probab=98.52  E-value=1.5e-05  Score=83.72  Aligned_cols=238  Identities=13%  Similarity=0.126  Sum_probs=126.6

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+.+.++..+..+..+||+|++.+|. +++.+|- .+++..++.+++.+..+.-+.|.....|.  ......-+++.+|
T Consensus        27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G  103 (499)
T PRK15049         27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG  103 (499)
T ss_pred             hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence            467889999999999999999999885 7777785 45666777777777667677776544333  2367777889999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH--HHHHhccCCCchhhHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS--LCIVLSQLPNLNSIAGLSL  257 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~--v~i~L~~l~~l~~L~~vS~  257 (408)
                      ++++.++.+...+.. ...+.+-....+..+.     .....   ..  ...|.....+  +...+- +...+....+..
T Consensus       104 ~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~-----~~~~~---~~--~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~  171 (499)
T PRK15049        104 EKAAYVAGWMYFINW-AMTGIVDITAVALYMH-----YWGAF---GG--VPQWVFALAALTIVGTMN-MIGVKWFAEMEF  171 (499)
T ss_pred             cHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HhccC---CC--CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            988776665432211 1111111111111111     11100   11  1234322211  111111 122233333222


Q ss_pred             HHH----HHHHHHHHhheeeeeecCCCCCC---CCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 015344          258 IGA----ITAVTYSTMVWVLSVSQPRPPNI---SYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF  328 (408)
Q Consensus       258 i~~----~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~  328 (408)
                      +..    +..+.+.++.+ ..+..+...+.   .+....+  ...+..+.+++.++...+|+|.|-..+...-+|+    
T Consensus       172 ~~~~iki~~l~~~ii~~i-~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----  246 (499)
T PRK15049        172 WFALIKVLAIVTFLVVGT-VFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----  246 (499)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----
Confidence            211    11111111111 11111211100   0100000  1012234556677778999999999999999999    


Q ss_pred             CCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344          329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF  359 (408)
Q Consensus       329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY  359 (408)
                      |+|++ .+.|++..++..+.++|+.......
T Consensus       247 knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~  276 (499)
T PRK15049        247 KDPQT-MVPKAINSVIWRIGLFYVGSVVLLV  276 (499)
T ss_pred             cChhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57865 3668888888888888877655433

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.50  E-value=1.1e-05  Score=83.76  Aligned_cols=234  Identities=15%  Similarity=0.110  Sum_probs=124.9

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++..+..++.+||+|++..|- +.+++|- ..++..++.+++.+....-+.|.....|..  ..+.+-+++.+|
T Consensus        11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a--Gg~y~~~~~~~g   87 (456)
T PRK10238         11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA--GSFSHFAYKYWG   87 (456)
T ss_pred             hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHcC
Confidence            578899999999999999999999884 4666664 445556666666666666666665433332  266666788899


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG  259 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~  259 (408)
                      +..+....+...+.. ...+.+.....++.++..    .+      +.....+.+++..+...+- +...+..+.+..+.
T Consensus        88 ~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~~----~p------~~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~  155 (456)
T PRK10238         88 SFAGFASGWNYWVLY-VLVAMAELTAVGKYIQFW----YP------EIPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWF  155 (456)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cC------cCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence            988877666433322 222333333334333221    11      1111222222211111111 12233333333322


Q ss_pred             HHHHHHHHH--hheee-eeecCC-CCCCCCCCCCCC--CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344          260 AITAVTYST--MVWVL-SVSQPR-PPNISYEPLSSA--SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH  333 (408)
Q Consensus       260 ~~~~l~y~~--ii~~~-~i~~g~-~~~~~~~~~~~~--~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~  333 (408)
                      .+..+.-.+  +++.+ .+..+. .+...+....+.  ..+..+.++..+++...|+|.|-..+...-+|+    |||+|
T Consensus       156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r  231 (456)
T PRK10238        156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ  231 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence            111111000  11000 011111 111111100011  112234577788889999999999999999999    57865


Q ss_pred             cccchhhHHHHHHHHHHHHHH
Q 015344          334 VPMWRGAKVAYLFIAMCLFPV  354 (408)
Q Consensus       334 ~~m~k~v~~s~~i~~~~Y~~v  354 (408)
                       .+.|++..++..+.++|+..
T Consensus       232 -~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        232 -SIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             35688887777777777654

>PRK10746 putative transport protein YifK; Provisional

Probab=98.48  E-value=2.5e-05  Score=81.25  Aligned_cols=238  Identities=13%  Similarity=0.090  Sum_probs=130.5

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++..+..+.++||+|++..| .+.+.+|- ..++..++.+++.+....-+.|.....|.  ..++.+.+++.+|
T Consensus         9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~g   85 (461)
T PRK10746          9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYMS   85 (461)
T ss_pred             hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhC
Confidence            57789999999999999999999988 66777785 34555666677666666667776544433  2377888999999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHH-HH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAG-LS  256 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~-vS  256 (408)
                      +.+|....+...+.. ...+.+.....+..++.+     .+     ......|.+++.++...+-.  .+...++.. .+
T Consensus        86 ~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~~-----~p-----~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~  154 (461)
T PRK10746         86 PFFGYLTAWSYWFMW-MAVGISEITAIGVYVQFW-----FP-----EMAQWIPALIAVALVALANLAAVRLYGEIEFWFA  154 (461)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-----cC-----CCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            988876665332221 222222333233332221     11     11122333332221111111  222222221 11


Q ss_pred             HHHHHHHHHHHHhheeee-eecCCC-CCCCCCCCCCC--CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344          257 LIGAITAVTYSTMVWVLS-VSQPRP-PNISYEPLSSA--SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA  332 (408)
Q Consensus       257 ~i~~~~~l~y~~ii~~~~-i~~g~~-~~~~~~~~~~~--~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~  332 (408)
                      .+-++..+.+.++.+.+. ...+.. +...++...++  ....++.++..++....|+|.|-..+...-+|+    |||+
T Consensus       155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~  230 (461)
T PRK10746        155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ  230 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence            111111111111111100 111111 11111111111  112346788899999999999999999999999    5786


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHH
Q 015344          333 HVPMWRGAKVAYLFIAMCLFPVAIG  357 (408)
Q Consensus       333 ~~~m~k~v~~s~~i~~~~Y~~vgi~  357 (408)
                      | .+.|++..++..+.++|+.....
T Consensus       231 k-~iP~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        231 V-TLRSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 46788888888788888775433

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.46  E-value=1.6e-06  Score=78.98  Aligned_cols=210  Identities=19%  Similarity=0.211  Sum_probs=118.2

Q ss_pred             HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHch----------------hhc----------
Q 015344          109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLH----------------EAV----------  162 (408)
Q Consensus       109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~----------------~~~----------  162 (408)
                      ....+.|.++|+|.|+||.||+.+||+.++.+|.+.+++++.+.-..++..                +.+          
T Consensus        17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~   96 (319)
T KOG3832|consen   17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD   96 (319)
T ss_pred             hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence            445677889999999999999999999999999999999998877766641                000          


Q ss_pred             -----CC-----Ccc------------------CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHH
Q 015344          163 -----PG-----KRY------------------NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFF  214 (408)
Q Consensus       163 -----~g-----~r~------------------~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~  214 (408)
                           .|     +|.                  ...+|++...|.|.+-.+..+++++++ +|-...|--.+--++-++.
T Consensus        97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiyl-fgdlaiyaaavpfs~m~it  175 (319)
T KOG3832|consen   97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYL-FGDLAIYAAAVPFSAMNIT  175 (319)
T ss_pred             cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHH-hhhhhhhhhcCchHhhhhh
Confidence                 00     000                  134677777788765566667777777 8988888766554444443


Q ss_pred             HH-HhCC-------CCCCC------C-Cc----chHHHHHHHHHHHHhc-cCCCchhhHHHHHHHHHHHHHHHHhheeee
Q 015344          215 QI-VCGP-------LCSSN------P-LT----TVEWYLVFTSLCIVLS-QLPNLNSIAGLSLIGAITAVTYSTMVWVLS  274 (408)
Q Consensus       215 ~~-~~~~-------~~~~~------~-l~----~~~~~ii~~~v~i~L~-~l~~l~~L~~vS~i~~~~~l~y~~ii~~~~  274 (408)
                      -. ...+       +|...      + ++    .+.+.+||++++. |+ .+-++++-+++-++..++--  ...+.+.+
T Consensus       176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~-lpftf~diqktk~iqiltslmrw--~~~~~g~~  252 (319)
T KOG3832|consen  176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLC-LPFTFADIQKTKHIQILTSLMRW--AAFILGIS  252 (319)
T ss_pred             hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHc-CceeEeccccchhHHHHHHHHHH--Hhccchhh
Confidence            21 1111       23211      1 11    1233334433221 12 13356666665544433221  11111222


Q ss_pred             eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCC
Q 015344          275 VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMP  325 (408)
Q Consensus       275 i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~  325 (408)
                      +..-+.. .+-.+  ...+....-++-..+|...|+|.+|...|.....++
T Consensus       253 l~tmqae-edaa~--a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq  300 (319)
T KOG3832|consen  253 LATMQAE-EDAAA--AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQ  300 (319)
T ss_pred             hhhhhhc-ccccc--cCCccccccccccccchhhHHHHhhccCCCCCCCCe
Confidence            2100110 01010  111122233444557889999999999998888773

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.43  E-value=4.4e-06  Score=85.43  Aligned_cols=239  Identities=15%  Similarity=0.104  Sum_probs=128.5

Q ss_pred             cHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344          105 NAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQ-LYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG  183 (408)
Q Consensus       105 s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~-~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g  183 (408)
                      +++++....++.++|+|+...| .+++.|.. .++..++.+++. ........|.....+.  .......+++++||+++
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~--~GG~y~~~~~~~g~~~g   77 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS--AGGIYVWVSRAFGPFWG   77 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS--STTHHHHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--cCeeeehhhhcccccch
Confidence            5788999999999999999999 77777765 444444444443 3444555555432222  23667788899999988


Q ss_pred             hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH--HhccCCCchhhHHHHHHHHH
Q 015344          184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI--VLSQLPNLNSIAGLSLIGAI  261 (408)
Q Consensus       184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i--~L~~l~~l~~L~~vS~i~~~  261 (408)
                      .+..+...+.. ...+.++.....+.+...+..   +    ...+...+.++..++++  .+.-+...|..+++..+..+
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~  149 (426)
T PF13520_consen   78 FIVGWLYWVAY-ILSLASVASSFASYLLSLFGP---D----LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTV  149 (426)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTG---G----GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             hcccceeEEEe-eccccccccchhhhhhhcccc---c----cccccchheeeeecccccceEeeechhhhhhhhhhhhhh
Confidence            77665433222 223333444344333222110   0    00011111111111111  11124455666666544443


Q ss_pred             HHH-HHHHhheeeeeecCCCCCCC---CCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344          262 TAV-TYSTMVWVLSVSQPRPPNIS---YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW  337 (408)
Q Consensus       262 ~~l-~y~~ii~~~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~  337 (408)
                      ..+ ...++.++..+.....++..   ..  .+......+.+++.++...+|+|.|-.....+-+|+|    +   |+..
T Consensus       150 ~~i~~~l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k----~---k~ip  220 (426)
T PF13520_consen  150 IKIVIPLLVLIILGIVSFSFSGFNSLSFS--LSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENK----N---KTIP  220 (426)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHH----S--HSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSS----S---HHHH
T ss_pred             hhhhhhhhhheeEEEeeeccccccccccc--ccccCCccccchhhHHHHHHhhccccccccccccccc----c---hhhe
Confidence            333 11111111122221111100   00  0000111233578889999999999999999999983    3   3466


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344          338 RGAKVAYLFIAMCLFPVAIGGFWAYGN  364 (408)
Q Consensus       338 k~v~~s~~i~~~~Y~~vgi~GYlaFG~  364 (408)
                      |++..+..++.++|+.+.+.-....++
T Consensus       221 ~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  221 RAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             eecccchhHHHHHHhhhhheeeecccc
Confidence            999999999999999987665555544

...

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.42  E-value=2.7e-06  Score=87.36  Aligned_cols=242  Identities=13%  Similarity=0.134  Sum_probs=139.4

Q ss_pred             ccccCCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChh-HHHHHHHHHHHHHHHHHHHHHHchhhc--CCCccCCHHHH
Q 015344           98 ITESRNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWS-WGILSLTIAYCWQLYTLWILVQLHEAV--PGKRYNRYVEL  173 (408)
Q Consensus        98 ~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~--~g~r~~sY~el  173 (408)
                      ...+|+-+.+.+++.++..+||+|+...|.... ++|=+ ..+++-++.++++......=.|.....  +|-   +|.- 
T Consensus         8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ay-   83 (479)
T KOG1287|consen    8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAY-   83 (479)
T ss_pred             ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhh-
Confidence            444678999999999999999999999997754 44433 344445667777776665555543221  221   3333 


Q ss_pred             HHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhh-HHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhh
Q 015344          174 AQAAFGERLGVWLALFPTVYLSAGTATTLILLGGET-MKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSI  252 (408)
Q Consensus       174 ~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~-L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L  252 (408)
                      ..++||+.++....+...+...-..+..+-+..++. ++.++. .    |...    +.+.-.++.+++.+....|..+.
T Consensus        84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----c~~p----~~~~~lla~~~l~~lt~~n~~~V  154 (479)
T KOG1287|consen   84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----CDVP----RVASKLLAAALLVLLTLINSFSV  154 (479)
T ss_pred             HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----CCCc----hHHHHHHHHHHHHHHHHHhhhhh
Confidence            346799887765554443333122334555666665 555443 2    3211    11121222223333334455555


Q ss_pred             HHHHHHHHHHHHH---HHHhheeee---eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344          253 AGLSLIGAITAVT---YSTMVWVLS---VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS  326 (408)
Q Consensus       253 ~~vS~i~~~~~l~---y~~ii~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~  326 (408)
                      ++.+.+=.+.++.   ...++++..   ..+|..++.+.++ .+. ...+..++..++=.-.|||.|=..+=-+-+|+  
T Consensus       155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g-~~~~~g~i~lafysglfa~~GWd~lN~vteEi--  230 (479)
T KOG1287|consen  155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEG-SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI--  230 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-ccc-CcCchHHHHHHHHHhhhcccCchhhccchHhh--
Confidence            5554333332221   111111111   1233333322111 111 22344568889999999999999999999999  


Q ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344          327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF  359 (408)
Q Consensus       327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY  359 (408)
                        |||.| ++.+++.+++.+++++|+.+-+..+
T Consensus       231 --knP~k-tLP~Ai~isi~lvt~iYil~NvAy~  260 (479)
T KOG1287|consen  231 --KNPRR-TLPRAILISIPLVTVIYVLVNVAYF  260 (479)
T ss_pred             --cCccc-cchHHHHHhhHHHHHHHHHhHhhee
Confidence              67865 5789999999999999999865443

>PRK10836 lysine transporter; Provisional

Probab=98.32  E-value=0.00014  Score=76.16  Aligned_cols=243  Identities=13%  Similarity=0.144  Sum_probs=128.5

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++..+..+.++||+|++.+| .+.+++|-...++..++.+++.+..+.-+.|.....|.  .......+++.+|
T Consensus        14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~--sGg~y~y~~~~~g   91 (489)
T PRK10836         14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV--SGSFATYGQNYVE   91 (489)
T ss_pred             cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHcC
Confidence            57789999999999999999999999 46778886445667777787777777777776654433  2256666778888


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH-H
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL-S  256 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v-S  256 (408)
                      +.+|....+.....  ...+.+.-......   +.+. ..+     ......+..++.++...+-  -.+...++..+ +
T Consensus        92 ~~~gf~~Gw~~~~~--~~~~~a~~~~a~~~---~~~~-~~~-----~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~  160 (489)
T PRK10836         92 EGFGFALGWNYWYN--WAVTIAVDLVAAQL---VMSW-WFP-----DTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS  160 (489)
T ss_pred             hHHHHHHHHHHHHH--HHHHHHHHHHHHHH---Hhhh-cCC-----CCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence            88776665532211  11222211111111   1111 111     1111122222211111111  12222222111 1


Q ss_pred             HHHHHHHHHHHH--hheeeeeecCCCCCCCCCCCCC-C-CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344          257 LIGAITAVTYST--MVWVLSVSQPRPPNISYEPLSS-A-SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA  332 (408)
Q Consensus       257 ~i~~~~~l~y~~--ii~~~~i~~g~~~~~~~~~~~~-~-~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~  332 (408)
                      .+=++..+.+.+  +.......++. ++..++...+ . .....+.++..+.....|+|.|-..+...-+|+    |||+
T Consensus       161 ~~ki~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~  235 (489)
T PRK10836        161 LIKVTTVIVFIIVGVLMIIGIFKGA-EPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA  235 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence            111111011111  11111111111 1111110110 0 011234556666667789999999999999999    6786


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 015344          333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAY  362 (408)
Q Consensus       333 ~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaF  362 (408)
                      | .+.|++..++..+.++|+.....-....
T Consensus       236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        236 K-NIPRAVRQVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            5 4679999999999999998765443333

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.26  E-value=6.6e-05  Score=77.76  Aligned_cols=224  Identities=14%  Similarity=0.074  Sum_probs=118.9

Q ss_pred             HhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHHHH
Q 015344          114 LNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV  192 (408)
Q Consensus       114 ~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~  192 (408)
                      +.++||+|++..|- ++++.|. ..++..++.+++.+.....+.|.....|.  .....+.+++.+|+.+|....+...+
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~~   80 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYWW   80 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence            56789999999995 7889996 47777777788777777777776544333  23677788899999888776654332


Q ss_pred             HHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHH--Hhh
Q 015344          193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYS--TMV  270 (408)
Q Consensus       193 ~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l~y~--~ii  270 (408)
                      .. ...+.......+..    ++...      .......+.+++.++...+- +...+..+.+..+..+.-+...  +++
T Consensus        81 ~~-~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii  148 (446)
T PRK10197         81 FW-VLVIPLEANIAAMI----LHSWV------PGIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIF  148 (446)
T ss_pred             HH-HHHHHHHHHHHHHH----HHhcc------ccCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            21 11111111111111    11111      11111222222211111111 2223333332222211111100  111


Q ss_pred             eeeeeecCCCCC---CCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHH
Q 015344          271 WVLSVSQPRPPN---ISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYL  345 (408)
Q Consensus       271 ~~~~i~~g~~~~---~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~  345 (408)
                      ..+....|..+.   ....+..+  ...+..+.++..++....|+|.|-..+...-+|+    |||+| .+.|++..++.
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~  223 (446)
T PRK10197        149 LGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIW  223 (446)
T ss_pred             HHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHH
Confidence            111111221110   00000000  1112345689999999999999999999999999    57865 46689888888


Q ss_pred             HHHHHHHHHHHH
Q 015344          346 FIAMCLFPVAIG  357 (408)
Q Consensus       346 i~~~~Y~~vgi~  357 (408)
                      .+.++|+...+.
T Consensus       224 ~i~i~Yil~~~~  235 (446)
T PRK10197        224 RISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHH
Confidence            888899876544

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.18  E-value=0.00018  Score=74.13  Aligned_cols=248  Identities=16%  Similarity=0.161  Sum_probs=127.5

Q ss_pred             cCCCcHHH-HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHY-AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~-a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +++.+.++ ........++|.|++.+|......+ ....+..++.+++.........|.....+.  .-.+.+-+++.+|
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~~g   87 (466)
T COG0531          11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRALG   87 (466)
T ss_pred             CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhhcC
Confidence            45566666 7788888899999999998888775 111222233333333333444444332222  2256667789999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSL  257 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~  257 (408)
                      ++.+....+...+.. .....+..+..++.+..++.... .    .......+.++..++...+.  -.+..+..+++..
T Consensus        88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~  161 (466)
T COG0531          88 PRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPG-L----LSIGPLLIILIALALIALLTLLNLRGIKASAKINS  161 (466)
T ss_pred             cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcch-h----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            887755544333222 22233333333333333322100 0    00001122222111111111  1334444444443


Q ss_pred             HHHHHHHHHHHhheeeeeecCCCCCCC-CCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344          258 IGAITAVTYSTMVWVLSVSQPRPPNIS-YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM  336 (408)
Q Consensus       258 i~~~~~l~y~~ii~~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m  336 (408)
                      +..+..+...++..+..+........+ +.+...  .......+..++....++|.|-..+...-+|+    |||++. .
T Consensus       162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-i  234 (466)
T COG0531         162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNP--GGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-I  234 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccccCCCccc--ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-c
Confidence            333322221111111111111111011 110000  11233468888999999999999999999999    567554 5


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344          337 WRGAKVAYLFIAMCLFPVAIGGFWAYGN  364 (408)
Q Consensus       337 ~k~v~~s~~i~~~~Y~~vgi~GYlaFG~  364 (408)
                      .|++..++.+++++|+...+.-....++
T Consensus       235 p~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         235 PRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            6999999999999999988777666654

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00011  Score=74.83  Aligned_cols=277  Identities=14%  Similarity=0.135  Sum_probs=150.7

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhh-chhHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILS-LTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~Gi-LsLP~Afa~~G~v~Giil-lil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      +|+.+.+.--+.-+...||+|. |+--.+.+.+|  +++++ -++.+++.+.-+..|.|...+.+.  ..++.+.+++.+
T Consensus        12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~--~gSF~~~a~~~l   87 (462)
T COG1113          12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV--SGSFSDYARKYL   87 (462)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHh
Confidence            4667778888888999999996 45667888888  44443 466666666667777776543333  349999999999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHH----hccCCCchhhH-
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIV----LSQLPNLNSIA-  253 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~----L~~l~~l~~L~-  253 (408)
                      |+++|....+.--... .-++++-+.-++..++.     +.+     +  ...|+....++.++    |...|.+.++- 
T Consensus        88 G~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-----WfP-----~--vP~Wv~al~~~~l~~~~NL~sVk~FGE~Ef  154 (462)
T COG1113          88 GPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-----WFP-----D--VPQWVFALAAVVLLLAVNLISVKVFGELEF  154 (462)
T ss_pred             cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----hcC-----C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877665322211 22344444444433332     322     1  13554433332222    22344455544 


Q ss_pred             HHHHHHHHHHHHHHHhheee--eeecCCCCCCCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          254 GLSLIGAITAVTYSTMVWVL--SVSQPRPPNISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       254 ~vS~i~~~~~l~y~~ii~~~--~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                      |++++=++..+.+.++.+++  ....+......++...+  +--+..+.+++.++-+.+|||.|...+=---+|-    |
T Consensus       155 WfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~  230 (462)
T COG1113         155 WFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----K  230 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----c
Confidence            33433333222222111111  11111111111111111  2234567899999999999999998888888888    5


Q ss_pred             CCCccccchhhHHHHH-----HHHHHHHHHHHHHHHhcCCCchh---hhcCCCCchhHHHHHHHHHHHHHHhhhccccc
Q 015344          330 HPAHVPMWRGAKVAYL-----FIAMCLFPVAIGGFWAYGNLVST---LNAKAHNKFTIGKKKELLDVLAYVEKCRKSQL  400 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~-----i~~~~Y~~vgi~GYlaFG~~v~~---il~n~~~~~~~~~~~~ll~~~~~~~~~~~~~~  400 (408)
                      +|++. +.|++..-..     -+..+.+++.+.-|-.++++.++   ++...+-| +.....|.+.+.++..-|.+..+
T Consensus       231 dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSgly  307 (462)
T COG1113         231 DPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIP-FAAGIMNFVVLTAALSALNSGLY  307 (462)
T ss_pred             ChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCc-ccccceeEEEeechhhccccccc
Confidence            67653 4466543333     33344455666777777776666   33344322 22233333344455555554443

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.00  E-value=0.0024  Score=66.72  Aligned_cols=253  Identities=12%  Similarity=0.070  Sum_probs=119.4

Q ss_pred             cCCCcHHHHHHHHHhhh-hhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          101 SRNGNAHYAAFHNLNAG-VGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~-iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      +|+-+.++....-++.+ +|.|+.+++ .+..++|- ..+...++.++..+....-+.|.....|..  -....-+++.+
T Consensus        12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a--GG~Y~~~~~~~   88 (475)
T TIGR03428        12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS--GAIYQWSRRMG   88 (475)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHHc
Confidence            36677777776666653 899999977 55566665 344445555555555566666654433322  14445567889


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH---HhCCCCCCCCCc-chHHHHHHHHHHHHhc--cCCCchhh
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI---VCGPLCSSNPLT-TVEWYLVFTSLCIVLS--QLPNLNSI  252 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~---~~~~~~~~~~l~-~~~~~ii~~~v~i~L~--~l~~l~~L  252 (408)
                      |+.++.+..+...+....+ +.+........+..+...   ...+........ ...+.+...+ .+++.  -+...|..
T Consensus        89 g~~~gf~~gW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~in~~g~k~~  166 (475)
T TIGR03428        89 GEVIGWFAGWFMIIAQIVT-AAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVL-LVLTTVINCIGVEWM  166 (475)
T ss_pred             CccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence            9988877766443322111 112122222222222110   110100000000 0112111111 11111  12233444


Q ss_pred             HHHHHHHHHHHHHHHHhheeeeeecCCC-CCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 015344          253 AGLSLIGAITAVTYSTMVWVLSVSQPRP-PNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP  331 (408)
Q Consensus       253 ~~vS~i~~~~~l~y~~ii~~~~i~~g~~-~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P  331 (408)
                      +++..+..+..+...+++++..+..... +...++.............+..+.-...|+|.|-..+..+-+|+    |||
T Consensus       167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP  242 (475)
T TIGR03428       167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KNP  242 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cCc
Confidence            4444333222111111111111111111 11111100000011112345556667789999999999999999    578


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344          332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG  363 (408)
Q Consensus       332 ~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG  363 (408)
                      +|. ..|++..+..++.++|+.+-+......+
T Consensus       243 ~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       243 RRV-APRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             chh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            653 5689998888877766665544444334

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.90  E-value=0.0016  Score=68.38  Aligned_cols=238  Identities=13%  Similarity=0.163  Sum_probs=116.5

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLY-TLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~y-t~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+-+.++-+...+++++|.+  .+|.+++..|.. +++..++.+++... ......|+....+.. .-.-..-.++++|
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G   81 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG   81 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence            467899999999999999975  669889988864 44444444444332 233355554322211 1144456678899


Q ss_pred             ccchhhHHHHHHHH---HHhhhh------hHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHH---HHhccCC
Q 015344          180 ERLGVWLALFPTVY---LSAGTA------TTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC---IVLSQLP  247 (408)
Q Consensus       180 ~~~g~~~~~~~~~~---l~~G~~------iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~---i~L~~l~  247 (408)
                      ++++.+..+.....   ...+.+      .++.++ +.......+.        ..........++.++.   +-+.-.+
T Consensus        82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~t~vn~~  152 (496)
T PRK15238         82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--------LGLNSTQVVGILAVIWMILVTFVASK  152 (496)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--------hcccchHHHHHHHHHHHHHHHHHHcc
Confidence            99887544321110   000010      011111 1110000000        0011111111111111   1111245


Q ss_pred             CchhhHHHHHHHHHHHH----HHHHhheeeeeecC-CCC-CCCCCCCC-C-CCCcCcHHHHHHHHHHHHHhhccccchHH
Q 015344          248 NLNSIAGLSLIGAITAV----TYSTMVWVLSVSQP-RPP-NISYEPLS-S-ASPAATVFSVMNALGIIAFAFRGHNLAME  319 (408)
Q Consensus       248 ~l~~L~~vS~i~~~~~l----~y~~ii~~~~i~~g-~~~-~~~~~~~~-~-~~~~~~~~~~~~algii~FAf~~h~vv~~  319 (408)
                      .++..+++.-++.+..+    ...++..+..+..+ ... +.++.... . ........++..++....|+|.|...+..
T Consensus       153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~  232 (496)
T PRK15238        153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG  232 (496)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            56666665543322111    01111101111112 111 11100000 0 00111123577778889999999999999


Q ss_pred             HHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344          320 IQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAI  356 (408)
Q Consensus       320 I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi  356 (408)
                      .-+|+    |||++ ...|++..+...+.++|+...+
T Consensus       233 ~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        233 LVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             HHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHH
Confidence            99999    57765 3569999999989999887643

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.83  E-value=0.0036  Score=65.41  Aligned_cols=60  Identities=17%  Similarity=0.106  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344          299 SVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG  363 (408)
Q Consensus       299 ~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG  363 (408)
                      ++..++-...|+|.|-......-+|+    |||+| .+.|++..+..+..++|+...+.-+...+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45566666789999999999999999    57865 46688888877766555444333333333

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.69  E-value=0.00036  Score=72.80  Aligned_cols=238  Identities=17%  Similarity=0.157  Sum_probs=126.4

Q ss_pred             Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHHHH
Q 015344          114 LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV  192 (408)
Q Consensus       114 ~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~  192 (408)
                      +..++|+|+.. .+.+..+.|....++..++.+++.+.++.-+.+.....+  +.-.+.+.+++.+|+..|....+...+
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y~~   84 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP--SAGGFYAYASRGLGPALGFAAGWAYWL   84 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc--cccchhhhhhhccCCcCCceeeHHHHH
Confidence            45678888765 668899999876777778888888777777777765443  233677788899999888766554221


Q ss_pred             HHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHH----HHHHHHHHHHhcc--CCCchhhHH-HHHHHHHHHHH
Q 015344          193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEW----YLVFTSLCIVLSQ--LPNLNSIAG-LSLIGAITAVT  265 (408)
Q Consensus       193 ~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~----~ii~~~v~i~L~~--l~~l~~L~~-vS~i~~~~~l~  265 (408)
                      .. .-.........+..++.. +. ..+     ......|    .+++.+++..+..  .|...+... +..+-.+..+.
T Consensus        85 ~~-~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~  156 (478)
T PF00324_consen   85 SY-IAAIAAEATAAGSFLQFW-GY-FPG-----LPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIA  156 (478)
T ss_pred             HH-HHHHHhhhhhhhhhhccc-cc-ccc-----ccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhh
Confidence            11 111111222222222211 00 000     0001112    2222222222221  233333222 22222211111


Q ss_pred             HHHhheeeeeecCCCCCCC-CC-C------CCC---CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344          266 YSTMVWVLSVSQPRPPNIS-YE-P------LSS---ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV  334 (408)
Q Consensus       266 y~~ii~~~~i~~g~~~~~~-~~-~------~~~---~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~  334 (408)
                      +.+..++.....+...+.+ +. +      ..+   +....++.++..++...+|+|.|-..+...-+|.    |+|+| 
T Consensus       157 ~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-  231 (478)
T PF00324_consen  157 FIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-  231 (478)
T ss_pred             hhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-
Confidence            1111101111111111110 00 0      000   1112346789999999999999999999999999    57865 


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015344          335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV  366 (408)
Q Consensus       335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v  366 (408)
                      .+.|++..++..+.++|+......-...+.+-
T Consensus       232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence            46799999999999999887665545554433

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=97.31  E-value=0.075  Score=55.08  Aligned_cols=189  Identities=16%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCC-CCCCcch--HHHHHHHHHHHHhc
Q 015344          168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCS-SNPLTTV--EWYLVFTSLCIVLS  244 (408)
Q Consensus       168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~-~~~l~~~--~~~ii~~~v~i~L~  244 (408)
                      .++..+.|..||+++.++..++.. ...+|-...-..++++.+..+++...++.-. ..+++..  .+++++.++.+++.
T Consensus        76 l~~~v~sR~~FG~~Gs~~~~~~~~-i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~  154 (442)
T TIGR00800        76 LPFPVLSRASFGIYGSLLPSLLRI-VMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL  154 (442)
T ss_pred             CCcchhhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            378889999999987777666544 4457888888888998888877765432000 0111112  22233333333333


Q ss_pred             cCCCchh---hHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHH-HhhccccchHHH
Q 015344          245 QLPNLNS---IAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIA-FAFRGHNLAMEI  320 (408)
Q Consensus       245 ~l~~l~~---L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~-FAf~~h~vv~~I  320 (408)
                      .+.-.+-   +.+.+....+..+.+.  ++...-..|..+-.+..  ...........+..++...+ +.-..-.+.+..
T Consensus       155 ~~~g~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~g~~~~~~~~--~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dy  230 (442)
T TIGR00800       155 FFFGYKIRHLFEWLAVVPPFAAFGML--IWALSKAHGKGPLGELT--GTLHGSTGAWAFLYALSLVIGSFATWATNAPDF  230 (442)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCccccCC--CCCCcchhHHHHHHHHHHHHHHHHHHHcCchhh
Confidence            3333333   3333333222222211  11111111111111110  00011223445555555533 222345577888


Q ss_pred             HhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCCch
Q 015344          321 QATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWA----YGNLVS  367 (408)
Q Consensus       321 ~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYla----FG~~v~  367 (408)
                      .+.+|    ++++..  +....++.........+|+.+-.+    +|+...
T Consensus       231 sRy~~----~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~  275 (442)
T TIGR00800       231 TRFGK----SKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW  275 (442)
T ss_pred             hhhcC----CccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence            88884    233222  445556666666666666666655    876543

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.27  E-value=0.016  Score=57.10  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhhhhhhhch---hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344          107 HYAAFHNLNAGVGFQALL---LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG  183 (408)
Q Consensus       107 ~~a~f~l~~~~iG~GiLs---LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g  183 (408)
                      .+-.|-.+..++|+|.=+   .=.-|.+-||. |+...++++++-..++.++.+...+. +  ..+|+|+-++.+|++++
T Consensus         6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-~--a~~y~~~~~~v~~~~~~   81 (349)
T COG3949           6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-N--ATSYREILKYVSGPKFA   81 (349)
T ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-c--ccchHHHHHHHhhHHHH
Confidence            344566777899999766   22345566655 66666777777777777777765433 2  34899999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344          184 VWLALFPTVYLSAGTATTLILLGGETMKMF  213 (408)
Q Consensus       184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l  213 (408)
                      |+.+...++.+ +++++.-+--.|..+++.
T Consensus        82 ki~d~~iif~l-f~~~vVM~AGags~~~e~  110 (349)
T COG3949          82 KIIDIIIIFFL-FSTAVVMLAGAGSLLEEM  110 (349)
T ss_pred             HHHHHHHHHHH-HHHHHHHhccchhHHHHH
Confidence            99998777776 777776665556565554

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.26  E-value=0.016  Score=61.13  Aligned_cols=50  Identities=6%  Similarity=-0.074  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 015344          301 MNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVA  355 (408)
Q Consensus       301 ~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vg  355 (408)
                      ...+-.++|+|.|-..+...-+|+    |+|+| .+.|++..+..++.++|+...
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence            344445689999999999999999    57865 356999998888888887533

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.15  E-value=0.026  Score=59.01  Aligned_cols=232  Identities=13%  Similarity=0.128  Sum_probs=138.1

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQAL-LLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiL-sLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+...+.-.+.-+...||+|++ +.-.+.+++|=...++..++++.+.+..+.-|.|+.-..|-  ..+|...+.+..+
T Consensus        43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~--sGsF~~ya~rfvd  120 (541)
T COG0833          43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV--SGSFSTYATRFVD  120 (541)
T ss_pred             hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhhhhhcC
Confidence            46677778888889999999986 47799999998877777888888888888888887644441  2368888888877


Q ss_pred             ccchhhHHHHHHHHHHhhhhhH-hHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhH-HH
Q 015344          180 ERLGVWLALFPTVYLSAGTATT-LILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIA-GL  255 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~ia-YiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~-~v  255 (408)
                      +-+|.-+.+. +... .-+.++ -++..+..++     .+.+    ...+...|..+|.++++.+-  -.|-+.+.- |+
T Consensus       121 pa~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi~-----yW~p----~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~  189 (541)
T COG0833         121 PAFGFALGWN-YWLN-WAVTLPLELTAASLVIQ-----YWFP----DTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF  189 (541)
T ss_pred             chHHHHHHHH-HHHH-HHHHhhHHHHHHHHhhh-----hhcC----CCCChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence            7655444331 1111 111111 1222222211     1211    12345678888766555543  245544433 34


Q ss_pred             HHHHHHHHHHHHHhheeeeeecCCCCC-----CCCCCCC-CCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          256 SLIGAITAVTYSTMVWVLSVSQPRPPN-----ISYEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       256 S~i~~~~~l~y~~ii~~~~i~~g~~~~-----~~~~~~~-~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                      |.+=+++.+.+.++.+++  .-|..++     .+|-  + +..-...+.++...+-+..|+|.|.-++----.|-    +
T Consensus       190 s~iKV~~ii~Fii~gii~--~~Gg~~~~~~ig~~yw--~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~  261 (541)
T COG0833         190 SSIKVLTIIGFIILGIII--ICGGGPTHGYIGFNYW--HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----E  261 (541)
T ss_pred             HHHHHHHHHHHHHHHHHH--hcCCCCCCCCcceeee--cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----C
Confidence            444444333333322111  1222221     1221  1 12223457788899999999999998877777777    5


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHH
Q 015344          330 HPAHVPMWRGAKVAYLFIAMCLFPV  354 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~i~~~~Y~~v  354 (408)
                      +|++ .+.|+++..+.=+.++|+..
T Consensus       262 nP~K-~iPkAik~vfwRIl~FYi~s  285 (541)
T COG0833         262 NPRK-SIPKAIKQVFWRILLFYILS  285 (541)
T ss_pred             Cchh-hhHHHHHHHHHHHHHHHHHH
Confidence            7765 36688888777777777643

>PRK11375 allantoin permease; Provisional

Probab=97.04  E-value=0.22  Score=52.27  Aligned_cols=50  Identities=10%  Similarity=0.105  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHH
Q 015344          168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIV  217 (408)
Q Consensus       168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~  217 (408)
                      .++.-+.|..||+++.++..++..+...+|-...-..++++.+..+++..
T Consensus        89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i  138 (484)
T PRK11375         89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKI  138 (484)
T ss_pred             CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999998777766554222234555555667788877776554

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.67  E-value=0.023  Score=60.51  Aligned_cols=245  Identities=15%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+.+.+.-.+.-+.++||+|++- ...+.++.|=..-++..++.++..+.+..-+.|..-..|.. ..++-..+.+.+|
T Consensus        29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~i~  107 (554)
T KOG1286|consen   29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRFVG  107 (554)
T ss_pred             hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeeeeC
Confidence            456777777777788999999987 55778888866556666767666666666666654333321 1134444456667


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHH-HHhCCCCCCCCCcchHHHHHHHHHHHH--hccCCCchhhHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ-IVCGPLCSSNPLTTVEWYLVFTSLCIV--LSQLPNLNSIAGLS  256 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~-~~~~~~~~~~~l~~~~~~ii~~~v~i~--L~~l~~l~~L~~vS  256 (408)
                      +-++..+.+-..+.- +-.+-+-....+..++.... ......  ....+...|+.++.++.++  +...+-+-.....+
T Consensus       108 e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w~~~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~  184 (554)
T KOG1286|consen  108 ESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYWTGASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSL  184 (554)
T ss_pred             cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccceeehH
Confidence            765554443221111 11111222222333333210 000000  0011123344333222221  22233322222221


Q ss_pred             H-HHHHHHHHHHHhheeeeeecCC-CCC-CCCCC---CCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 015344          257 L-IGAITAVTYSTMVWVLSVSQPR-PPN-ISYEP---LSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF  328 (408)
Q Consensus       257 ~-i~~~~~l~y~~ii~~~~i~~g~-~~~-~~~~~---~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~  328 (408)
                      . .-+++.+.+.++.+++  .-|- ..+ .+|.+   +++  .-.+..+.++..++-+..|+|.|.-.+-..-+|-    
T Consensus       185 ~~~kvl~~v~~~Il~iVi--~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----  258 (554)
T KOG1286|consen  185 AFNKILTAVGFIILAIVI--IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA----  258 (554)
T ss_pred             HHHHHHHHHHHHHhheee--ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence            1 1122222222222221  1221 111 12221   111  1112336789999999999999999998888888    


Q ss_pred             CCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344          329 KHPAHVPMWRGAKVAYLFIAMCLFPVAI  356 (408)
Q Consensus       329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi  356 (408)
                      |||+|. ..++++.++..++++|+...+
T Consensus       259 kNP~k~-IP~ai~~s~~ri~~~Yi~~~~  285 (554)
T KOG1286|consen  259 KNPRKA-IPKAIKQSLLRILLFYILSSI  285 (554)
T ss_pred             cCCccc-ccHHHHHHHHHHHHHHHHHHH
Confidence            678753 568999999999999988765

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=96.52  E-value=0.23  Score=51.75  Aligned_cols=48  Identities=10%  Similarity=0.032  Sum_probs=39.2

Q ss_pred             HHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344          306 IIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG  358 (408)
Q Consensus       306 ii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G  358 (408)
                      .+.|+|.|-..+...-+|+    |||+|. ..|++..+..++.++|+...+.-
T Consensus       202 ~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~l~~~~~  249 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDV----DNPDKN-YPIAILIAALGTVLIFVLGTLAI  249 (474)
T ss_pred             HHHHHHhchhHhHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999    577653 66999999999999998765443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=95.82  E-value=2  Score=43.73  Aligned_cols=226  Identities=14%  Similarity=0.171  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCc-cCCHHHHHHHHhCccchh
Q 015344          106 AHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKR-YNRYVELAQAAFGERLGV  184 (408)
Q Consensus       106 ~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r-~~sY~el~~~~~G~~~g~  184 (408)
                      |....+++.+-..|+....       .++..+++..++..++...-..+....     |.| ..++.-+.|..||+++.+
T Consensus         7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~-----G~~~Gl~~~v~sR~~FG~~Gs~   74 (386)
T TIGR02358         7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVI-----GADTGLSAMGSLKLSLGSKGSV   74 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccCcCHHHHHHHHHccchhh
Confidence            4555666666666653211       555555554444443332222222222     222 247999999999998777


Q ss_pred             hHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Q 015344          185 WLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAV  264 (408)
Q Consensus       185 ~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l  264 (408)
                      +..++. ...+.|--..-...+++.+..+.+...+.      .....+.+++.++.++.. +...+.++++..++....+
T Consensus        75 ~~~~l~-~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~  146 (386)
T TIGR02358        75 LPSLLN-LLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLL  146 (386)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            665543 33446666667777888888877543221      112334444444333333 3345556666555544322


Q ss_pred             HHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHH-HhhccccchHHHHhhCCCCCCCCCccccchhhHHH
Q 015344          265 TYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIA-FAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVA  343 (408)
Q Consensus       265 ~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~-FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s  343 (408)
                      ..++...+..+.+..... ...  .+. . ..   +..++...+ +.-......+...+..    |++++  .......+
T Consensus       147 i~~~~~~~~~~~~~~~~~-~~~--~~~-~-~s---~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G  212 (386)
T TIGR02358       147 IATLWLLVVVFSKADLSE-LWN--RAG-D-MS---FAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLG  212 (386)
T ss_pred             HHHHHHHHHHHhccchhh-hcC--CCC-C-cc---HHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHH
Confidence            211111111122211111 111  011 1 11   222222211 1011223355666655    22322  34556667


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Q 015344          344 YLFIAMCLFPVAIGGFWAYGNL  365 (408)
Q Consensus       344 ~~i~~~~Y~~vgi~GYlaFG~~  365 (408)
                      +.+...+...+|...-.+.|+.
T Consensus       213 ~~i~~~~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       213 YFIGSCWMYFLGLAVTLATGQT  234 (386)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Confidence            7777777778888777777653

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00835 agcS amino acid carrier protein

Probab=95.31  E-value=0.45  Score=49.05  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             CCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHH----HHHHHHHHHHHHHHHHHHHHchhhcCCCccCCH-----H
Q 015344          102 RNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWG----ILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRY-----V  171 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~G----iillil~~~l~~yt~~lLv~~~~~~~g~r~~sY-----~  171 (408)
                      ++-|.+++.+..+.+.+|+| ++++|.|.+..| -.+    .+..++.+...+.-..+..+..+. ++  ..+|     .
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~--~g~~~GGP~y  120 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DA--DGVFRGGPMY  120 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CC--CCCEecChHH
Confidence            34788999999999999998 999999977766 434    333333333333334444444431 11  1235     6


Q ss_pred             HHHHHHhCccchhhHHHH
Q 015344          172 ELAQAAFGERLGVWLALF  189 (408)
Q Consensus       172 el~~~~~G~~~g~~~~~~  189 (408)
                      .+-+...|||.+.++.++
T Consensus       121 yi~~gl~~k~lg~lfa~~  138 (425)
T TIGR00835       121 YIKKGLGMRWLAVLFAVF  138 (425)
T ss_pred             HHHHHhCccHHHHHHHHH
Confidence            777777777656555443

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=94.91  E-value=5.2  Score=41.90  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             ccCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHH
Q 015344          100 ESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLT--IAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQ  175 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giilli--l~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~  175 (408)
                      ..|+.+++...+.+..+.+|+ ..++.|-...+.|+.+-...+.  ....+.. +-...+.+..++   .+..|+.|.-+
T Consensus        39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l~  115 (483)
T PRK09442         39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDMLR  115 (483)
T ss_pred             eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHH
Confidence            356777788888887776665 6677886666667642111111  1111111 111112222222   23459999999


Q ss_pred             HHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHH
Q 015344          176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL  255 (408)
Q Consensus       176 ~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~v  255 (408)
                      +-||++..++...+..+...++...+.+.-.+..++.+++           ++...-+++.+++.++...+--++...+.
T Consensus       116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----------i~~~~~iii~~~iv~iYt~~GGl~av~~T  184 (483)
T PRK09442        116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----------ISYETGLLIFGITVALYTAFGGFRAVVLT  184 (483)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            9999765554443332222233333334444444444321           11122233334444555566677776665


Q ss_pred             HHHH
Q 015344          256 SLIG  259 (408)
Q Consensus       256 S~i~  259 (408)
                      -.+=
T Consensus       185 D~iQ  188 (483)
T PRK09442        185 DALQ  188 (483)
T ss_pred             HHHH
Confidence            5443

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=94.52  E-value=6.8  Score=41.29  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             CCCcccccccCCCcHHHHHHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHchhhcCCCcc
Q 015344           92 QDAWLPITESRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLT---IAYCWQLYTLWILVQLHEAVPGKRY  167 (408)
Q Consensus        92 ~d~~~~~~~~r~~s~~~a~f~l~~~~iG-~GiLsLP~Afa~~G~v~Giilli---l~~~l~~yt~~lLv~~~~~~~g~r~  167 (408)
                      .|||..  ..|+-..+-..+...-+.++ .-.+++|-.....|+....+.+.   +..+...+-..-+.+..+   ..+.
T Consensus        30 ~~dy~~--~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~~~  104 (493)
T COG0591          30 LEDYFL--GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK---ARGA  104 (493)
T ss_pred             hHHHhc--cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCC
Confidence            345533  33555555555666666666 88999999888899864333322   222233333333333332   2335


Q ss_pred             CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHH
Q 015344          168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMK  211 (408)
Q Consensus       168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~  211 (408)
                      .|..|.-++=||++..|.+..+..+...++-+...++-++..++
T Consensus       105 ~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~  148 (493)
T COG0591         105 TTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLS  148 (493)
T ss_pred             ccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            69999999999954455544333333335555555555555543

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=93.92  E-value=2.2  Score=42.95  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             CcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHH----HHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIA----YCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       104 ~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~----~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      .+.+.-..|=..++-|+|-+.=|..-++.||+++.+-+++.    +.+--|...++. .     .++-.|..|++++..|
T Consensus        52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S-v-----R~~G~Si~~i~~~~lG  125 (376)
T PF02554_consen   52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS-V-----RHKGKSIGEIAGKYLG  125 (376)
T ss_pred             CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh-h-----cCCCccHHHHHHHHHH
Confidence            34456677778899999999999888999999777655433    334444433321 1     1112499999999999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETM  210 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L  210 (408)
                      |+.++++.++..+.+ .-...++.....+.+
T Consensus       126 ~~~~~lf~~f~~~~l-ilV~avF~~v~a~~~  155 (376)
T PF02554_consen  126 KRAKKLFLIFIFFLL-ILVIAVFADVVANTF  155 (376)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            998887776655444 444555555444443

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=93.08  E-value=14  Score=39.21  Aligned_cols=75  Identities=11%  Similarity=0.068  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhhc-CCCC
Q 015344          297 VFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNA-KAHN  375 (408)
Q Consensus       297 ~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~il~-n~~~  375 (408)
                      -+.+..++-.-++.+.|--....+-+|-    |++++. -.|++..+..+..++=..+-+.-..+-++|.+.+++ +...
T Consensus       251 G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~  325 (550)
T KOG1289|consen  251 GWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQ  325 (550)
T ss_pred             hHHHHHhhccceeEEeccCchHHHHHHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCC
Confidence            3566666777777888888888899998    455543 347777666666555444444444455655555444 4343


Q ss_pred             c
Q 015344          376 K  376 (408)
Q Consensus       376 ~  376 (408)
                      |
T Consensus       326 p  326 (550)
T KOG1289|consen  326 P  326 (550)
T ss_pred             h
Confidence            3

>TIGR02119 panF sodium/pantothenate symporter

Probab=92.58  E-value=15  Score=38.29  Aligned_cols=146  Identities=12%  Similarity=0.147  Sum_probs=75.0

Q ss_pred             cccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHH----HchhhcCCCccCCHHHH
Q 015344           99 TESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILV----QLHEAVPGKRYNRYVEL  173 (408)
Q Consensus        99 ~~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv----~~~~~~~g~r~~sY~el  173 (408)
                      ...|+.+++...+.+..+.+|++ .++.|-...+.|+.+..+.... ....+.+..++.    +..++   .+..|..|.
T Consensus        37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~  112 (471)
T TIGR02119        37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRK---YNAITINDV  112 (471)
T ss_pred             EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---cCCccHHHH
Confidence            33577888888888888888765 4568877777786432221110 011111212222    11221   234599999


Q ss_pred             HHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhH
Q 015344          174 AQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIA  253 (408)
Q Consensus       174 ~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~  253 (408)
                      -++-||++..++...+..+...++..++.+.-.+..++.+++           ++...-+++.+++.+....+--++...
T Consensus       113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-----------i~~~~~iii~~~iv~iYt~~GG~~av~  181 (471)
T TIGR02119       113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-----------LSYLTALFIFSSSVLIYTTFGGFRAVA  181 (471)
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999765555433333222244444444444444444321           111222333333344455566777777


Q ss_pred             HHHHHH
Q 015344          254 GLSLIG  259 (408)
Q Consensus       254 ~vS~i~  259 (408)
                      +...+=
T Consensus       182 ~td~iQ  187 (471)
T TIGR02119       182 LTDAIQ  187 (471)
T ss_pred             HHHHHH
Confidence            765443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR00813 sss transporter, SSS family

Probab=92.22  E-value=15  Score=37.45  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             CCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344          102 RNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE  180 (408)
Q Consensus       102 r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~  180 (408)
                      |+-+++...+.+..+.+|+ ..++.|-...+.|+..... .....+.......+..+..++   .+..|..|.-+.-||+
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg~   78 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFY-ELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFGK   78 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhCc
Confidence            5666777777777666654 5667887666677542221 122222222233334333322   2256999999999998


Q ss_pred             cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344          181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMF  213 (408)
Q Consensus       181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l  213 (408)
                      +..+.+..+..+...+....+.+.-.+..++.+
T Consensus        79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~  111 (407)
T TIGR00813        79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELI  111 (407)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655555433322222444555555555555444

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=91.35  E-value=1.8  Score=44.59  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAF--LGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~--~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      +|+.+.++-+..-....+....+.+-.....  .++..+++.+++..++...-..++..... +.|   .++..++|..|
T Consensus         6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G---l~~~v~sR~~F   81 (440)
T PF02133_consen    6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG---LPTMVLSRASF   81 (440)
T ss_dssp             G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTTS
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC---CCchhcchhcc
Confidence            4555554444443444443333333322222  23344444444444433322222222221 112   47888999999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH
Q 015344          179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI  216 (408)
Q Consensus       179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~  216 (408)
                      |.++.++..++.. ..++|-...-..+.++.+..+.+.
T Consensus        82 G~~Gs~l~~~l~~-i~~igW~av~~~~~g~al~~~~~~  118 (440)
T PF02133_consen   82 GYRGSKLPSLLRA-ISAIGWFAVNTWLGGQALAALLGI  118 (440)
T ss_dssp             -TTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9987666655433 334677777777888888887654

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PRK11017 codB cytosine permease; Provisional

Probab=91.22  E-value=19  Score=36.79  Aligned_cols=44  Identities=16%  Similarity=0.049  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHH
Q 015344          168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM  212 (408)
Q Consensus       168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~  212 (408)
                      .++.-++|..||.++.++..++.. ...+|-...-..+.++.+..
T Consensus        71 ~~~~v~sR~~FG~~Gs~l~~~~~~-i~~igW~av~~~~~~~~l~~  114 (404)
T PRK11017         71 LSTHLLARFSFGEKGSWLPSLLLG-FTQVGWFGVGVAMFAIPVVK  114 (404)
T ss_pred             cCHHHHHHHHhchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Confidence            489999999999987776655433 23344444444444444443

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=89.69  E-value=28  Score=36.20  Aligned_cols=180  Identities=14%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             HHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CC
Q 015344          170 YVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LP  247 (408)
Q Consensus       170 Y~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~  247 (408)
                      =..++|+.||.+++++..... ...++|-...-.+..++.   ..   ..+     ..+...|++++++++.+...  .|
T Consensus        83 qmi~sR~~fG~~Gs~l~sll~-~~~~iGW~~v~~~l~~~a---~~---~~~-----~~~~~~~ili~g~l~~l~~ifG~r  150 (442)
T COG1457          83 QMILSRYPFGVKGSILPSLLN-GITLIGWFGVNVILSGIA---IG---SGT-----GLPVWAGILIIGVLMTLVTIFGYR  150 (442)
T ss_pred             hheeecccccchhHHHHHHHH-HHHHhhHHHHHHHHhccc---cc---cCC-----CCcHHHHHHHHHHHHHHHHHHhHH
Confidence            345678899998776655543 333477776666666665   11   111     22345566666655444332  34


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhheeeeee-cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhh-ccccchHHHHhhCC
Q 015344          248 NLNSIAGLSLIGAITAVTYSTMVWVLSVS-QPRPPNISYEPLSSASPAATVFSVMNALGIIAFAF-RGHNLAMEIQATMP  325 (408)
Q Consensus       248 ~l~~L~~vS~i~~~~~l~y~~ii~~~~i~-~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf-~~h~vv~~I~~~M~  325 (408)
                      -++.+.+++....+..+.|.+..   .+. ++..... +.  +   .+.++.++..++...+=.+ ..-.......+-+|
T Consensus       151 ~l~~l~~~a~~~~~~lf~~l~~~---~~~~~~~~~~~-~~--~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~  221 (442)
T COG1457         151 ALHKLERIAVPLLLLLFLYLLAL---LFRSKGGLDAL-WV--K---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP  221 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHhccccccee-ec--c---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC
Confidence            45555555544433333322211   111 2211111 11  1   1223344544444333222 34455666777774


Q ss_pred             CCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCc-hh-hhcCCC
Q 015344          326 STFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV-ST-LNAKAH  374 (408)
Q Consensus       326 ~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v-~~-il~n~~  374 (408)
                      +  ++|  ++.......+......+-..+|...-.+=|+.- .. +.+.+.
T Consensus       222 ~--~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G  268 (442)
T COG1457         222 S--PTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG  268 (442)
T ss_pred             C--Cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence            3  222  111123334445556666677888877877766 22 444443

>PRK15015 carbon starvation protein A; Provisional

Probab=89.41  E-value=5.3  Score=43.19  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchh
Q 015344          109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC----WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGV  184 (408)
Q Consensus       109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~----l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~  184 (408)
                      -.-|=..++-|+|-+.=|.--++.||+++.+-+++..+    +.-|.....   +-   .++-.|..|++++..|++.+.
T Consensus        88 LfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~---S~---R~~GrSig~ia~~~iG~~~~~  161 (701)
T PRK15015         88 LFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV---ST---RRDGRSLGELVKEEMGPTAGV  161 (701)
T ss_pred             hhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee---ee---cCCCccHHHHHHHHhhHHHHH
Confidence            44566779999999999999999999999886554433    222221111   11   112249999999999998777


Q ss_pred             hHHHHHHHHH
Q 015344          185 WLALFPTVYL  194 (408)
Q Consensus       185 ~~~~~~~~~l  194 (408)
                      ++.++..+++
T Consensus       162 lfli~i~~il  171 (701)
T PRK15015        162 IALVACFMIM  171 (701)
T ss_pred             HHHHHHHHHH
Confidence            6655444443

>PRK12488 acetate permease; Provisional

Probab=87.33  E-value=45  Score=35.66  Aligned_cols=145  Identities=10%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             cccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHHHchhhcCCCccCCHHHHHHH
Q 015344           99 TESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYT-LWILVQLHEAVPGKRYNRYVELAQA  176 (408)
Q Consensus        99 ~~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt-~~lLv~~~~~~~g~r~~sY~el~~~  176 (408)
                      ...|+.+++...+.+..+.++++ .++.|-.....|+.. .... +...+.+.- .+++.+-..+ .+  ..|..|.-++
T Consensus        64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~-~g~~~g~~~~~~~~a~~lr~-~g--~~T~~d~l~~  138 (549)
T PRK12488         64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYA-LGVLAGWPIILFLIAERLRN-LG--KYTFADVVSY  138 (549)
T ss_pred             eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHH-HHHHHHHHHHHHHHHHHHHH-CC--CcchHHHHHH
Confidence            34578888888888888877766 477997777788752 2111 111122111 1223322121 13  3588898888


Q ss_pred             HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHH
Q 015344          177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS  256 (408)
Q Consensus       177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS  256 (408)
                      =||.+..|.+..+..+...+....+.++-.+..++.++    +       ++...-+++.+++.++...+--++...|..
T Consensus       139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~----g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td  207 (549)
T PRK12488        139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF----G-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQ  207 (549)
T ss_pred             HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-------CCHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            88854445443322222223333333333443333332    1       111111333344444555566677766666


Q ss_pred             HHH
Q 015344          257 LIG  259 (408)
Q Consensus       257 ~i~  259 (408)
                      .+=
T Consensus       208 ~iQ  210 (549)
T PRK12488        208 IIK  210 (549)
T ss_pred             HHH
Confidence            544

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=86.88  E-value=47  Score=35.46  Aligned_cols=86  Identities=9%  Similarity=-0.014  Sum_probs=48.3

Q ss_pred             cccCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344           99 TESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA  177 (408)
Q Consensus        99 ~~~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~  177 (408)
                      .-.|+-.++...+.+..+.+++ -.++.|-.....|+..-... ....+......+++.+-.++. +  ..|-.|.-+.=
T Consensus        29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~-~--~~T~~e~l~~R  104 (552)
T TIGR03648        29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKF-G--KYTVPDFIGDR  104 (552)
T ss_pred             eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHC-C--CccHHHHHHHH
Confidence            3457888888888888887755 56778876666776421111 111111111223333333221 3  34778887888


Q ss_pred             hCccchhhHHH
Q 015344          178 FGERLGVWLAL  188 (408)
Q Consensus       178 ~G~~~g~~~~~  188 (408)
                      ||++..+++..
T Consensus       105 f~s~~~~~~~~  115 (552)
T TIGR03648       105 YYSNTARLVAV  115 (552)
T ss_pred             hCCCceehhHH
Confidence            88665555543

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=85.23  E-value=57  Score=34.87  Aligned_cols=82  Identities=11%  Similarity=0.100  Sum_probs=45.4

Q ss_pred             cCCCcHHHHHHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          101 SRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG-~GiLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      .|+..++...+.+..+.++ ...++.|-.....|+- +....+ ...+.+ ...+++.+-.++ .|  ..|..|.-++=|
T Consensus        66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr-~g--~~T~~d~l~~Rf  140 (549)
T TIGR02711        66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN-LG--RYTFADVASYRL  140 (549)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH-cC--CccHHHHHHHHc
Confidence            5677777777777776555 5678899777777864 222111 111221 112233332221 23  358999888888


Q ss_pred             CccchhhHH
Q 015344          179 GERLGVWLA  187 (408)
Q Consensus       179 G~~~g~~~~  187 (408)
                      |.+..|.+.
T Consensus       141 ~s~~~r~l~  149 (549)
T TIGR02711       141 KQRPIRILS  149 (549)
T ss_pred             CCcchhHHH
Confidence            765455543

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=84.28  E-value=42  Score=34.01  Aligned_cols=142  Identities=13%  Similarity=0.034  Sum_probs=65.2

Q ss_pred             cCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      .|+.+++...+.+..+.+|+ ..++.|-...+.|+..... .+...+......+++.+-..+   .+..|..|.-++-||
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~-~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~~~~Ryg   80 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWY-AIGYAIGFLLFALFFAPRLRR---SGAVTIPEYLEKRYG   80 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHH-HHHHHHHHHHHHHHTHHHHHH---TT--SHHHHHHHHT-
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee-ccccchhHHHHHHHHHHhhcc---cchhhhhhhhhhhcC
Confidence            46777888888888887776 5677898888888763322 232222223333333333221   235699999999999


Q ss_pred             ccc-hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHH
Q 015344          180 ERL-GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSL  257 (408)
Q Consensus       180 ~~~-g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~  257 (408)
                      ++. .+.+..+..+...+....+.+.-.+..++.++.           ++.....++..++.++...+--++...+...
T Consensus        81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~  148 (406)
T PF00474_consen   81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDF  148 (406)
T ss_dssp             HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHH
T ss_pred             Cchhhhhhcccccchhhhhhhhccccccccchhhccc-----------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence            975 344433222221133333444444444333321           1122233344444445555555565555443

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=82.86  E-value=5.6  Score=40.51  Aligned_cols=76  Identities=22%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCC
Q 015344          169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN  248 (408)
Q Consensus       169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~  248 (408)
                      -..+++++.||+.++.++.+. ...-|++++++.+...++.+..+..          ..+.+.|.+++.++.+.++ .-.
T Consensus       256 ~l~~~a~~~~G~~G~~ll~i~-v~lACLtT~iGli~~~a~~f~~~~~----------k~~y~~~v~~~~l~s~~ia-~~G  323 (378)
T TIGR00796       256 ILSAYSQHLFGSLGSFLLGLI-ITLACLTTAVGLTTACSEYFHKLVP----------KLSYKTWVIVFTLFSFIVA-NLG  323 (378)
T ss_pred             HHHHHHHHHcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHHH-HhC
Confidence            567899999999766666554 4445799999999988877666522          1234566665555444444 225


Q ss_pred             chhhHHHH
Q 015344          249 LNSIAGLS  256 (408)
Q Consensus       249 l~~L~~vS  256 (408)
                      ++++-.++
T Consensus       324 l~~Ii~~~  331 (378)
T TIGR00796       324 LTQIISIS  331 (378)
T ss_pred             HHHHHHHH
Confidence            56555544

transmembrane helical spanners.

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=80.31  E-value=9.1  Score=39.60  Aligned_cols=86  Identities=21%  Similarity=0.329  Sum_probs=52.7

Q ss_pred             CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCC
Q 015344          169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN  248 (408)
Q Consensus       169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~  248 (408)
                      -..+++++.||+.+..++.+ ....-|+-+|++.+...+|.++++++.          .+.+.|.+++.++-.+++ .-.
T Consensus       262 lL~~i~~~~~G~~G~~ll~i-iv~lACLTTaIGL~~a~a~yf~~~~~k----------isY~~~v~i~~i~S~~ia-n~G  329 (427)
T PF05525_consen  262 LLSQIANHLFGSAGQILLGI-IVFLACLTTAIGLISACAEYFSELFPK----------ISYKVWVIIFTIFSFIIA-NLG  329 (427)
T ss_pred             HHHHHHHHHcChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc----------cChHHHHHHHHHHHHHHH-HhC
Confidence            46788999999964444444 344447899999999999888876542          234667666655555544 223


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q 015344          249 LNSIAGLSLIGAITAVTYST  268 (408)
Q Consensus       249 l~~L~~vS~i~~~~~l~y~~  268 (408)
                      ++.+-.+|.  =+..+.|-.
T Consensus       330 l~~Ii~~s~--PiL~~iYP~  347 (427)
T PF05525_consen  330 LDQIIKISV--PILMFIYPV  347 (427)
T ss_pred             HHHHHHHHH--HHHHHHhHH
Confidence            444444432  233445554

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.21
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.91
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.35
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.67
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	84.98

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.21  E-value=3.4e-10  Score=114.36  Aligned_cols=246  Identities=16%  Similarity=0.112  Sum_probs=143.4

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      ++|+-+.++.++..+.+++|+|++.+|...++.|.. +++..++.+++.........|.....+.  ...+.+.+++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence            357889999999999999999999999988888864 7777788888888887777777654433  2367788899999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHH-HHhccCCCchhhHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC-IVLSQLPNLNSIAGLSLI  258 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~-i~L~~l~~l~~L~~vS~i  258 (408)
                      |+++....+...+.. .....++....++.+..++..     +. .  ....+.+.+.++. +.+.-+...+..+++..+
T Consensus        83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~  153 (445)
T 3l1l_A           83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPI-----LK-D--PWVLTITCVVVLWIFVLLNIVGPKMITRVQAV  153 (445)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGG-----GG-S--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcc-----cc-c--cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            988877766443332 222333433333333222110     00 0  0111211111111 111123345555555443


Q ss_pred             HHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 015344          259 GAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR  338 (408)
Q Consensus       259 ~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k  338 (408)
                      .....+...++..+..+......+. ..+.. .....++.++..++....|+|.|...+....+|+    |||++ ...|
T Consensus       154 ~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~  226 (445)
T 3l1l_A          154 ATVLALIPIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPI  226 (445)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccH
Confidence            3322221111111111111111111 00011 1111235578899999999999999999999999    57754 3568


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344          339 GAKVAYLFIAMCLFPVAIGGFWAYGN  364 (408)
Q Consensus       339 ~v~~s~~i~~~~Y~~vgi~GYlaFG~  364 (408)
                      ++..+..+++++|+...+..+...+.
T Consensus       227 a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          227 ATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            99999999999999988776666653

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.91  E-value=1.3e-08  Score=102.63  Aligned_cols=240  Identities=9%  Similarity=0.049  Sum_probs=139.6

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF  178 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~  178 (408)
                      ++|+-+.++..+..+..++|+|++.+| .+.+.+|- ..++..++.+++.+.+...+.|.....+.  .....+.+++.+
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~   80 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAI   80 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHh
Confidence            467889999999999999999999987 45566675 57777888888888888888887654433  236778889999


Q ss_pred             Cccc-hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHH--hccCCCchhhHH
Q 015344          179 GERL-GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIV--LSQLPNLNSIAG  254 (408)
Q Consensus       179 G~~~-g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~--L~~l~~l~~L~~  254 (408)
                      |+++ +.++.+...+.. ...+..+....++.+..++    +. .     ....|..++..+ .++  +.-+...+..++
T Consensus        81 G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~----~~-~-----~~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (444)
T 3gia_A           81 GDNIITGALSILLWMSY-VISIALFAKGFAGYFLPLI----NA-P-----INTFNIAITEIGIVAFFTALNFFGSKAVGR  149 (444)
T ss_dssp             CSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----TC-C-----CCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----CC-C-----CchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            9963 222222211111 2223334444444444332    11 0     111221111111 111  112334455555


Q ss_pred             HHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344          255 LSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV  334 (408)
Q Consensus       255 vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~  334 (408)
                      +..+.....+...++.++..+......  ++.|   .....++.+++.++....|+|.|...+....+|+    |||++ 
T Consensus       150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-  219 (444)
T 3gia_A          150 AEFFIVLVKLLILGLFIFAGLITIHPS--YVIP---DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-  219 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCGG--GTSC---CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcChh--hcCC---CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-
Confidence            443332221211111111111111111  1221   1122345678888899999999999999999999    57864 


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344          335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYG  363 (408)
Q Consensus       335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG  363 (408)
                      ...|++..+..+++++|+...+......+
T Consensus       220 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          220 NVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35599999999999999988776555544

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.35  E-value=6.6e-06  Score=84.30  Aligned_cols=244  Identities=9%  Similarity=0.025  Sum_probs=119.0

Q ss_pred             ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchh--hcCCCccCCHHHHHHH
Q 015344          100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHE--AVPGKRYNRYVELAQA  176 (408)
Q Consensus       100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~--~~~g~r~~sY~el~~~  176 (408)
                      .+|+-+.++.++..+..++|  +.++|. .+..|.. .++..++.+++.. .+...+.|...  ..+ .  ......+++
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~--GG~y~~~~~   81 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-E--GGVFAWVSN   81 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-C--CChhhhHHh
Confidence            35788999999999999986  567775 5677754 3333333333322 24555556554  443 2  367778889


Q ss_pred             HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHH
Q 015344          177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS  256 (408)
Q Consensus       177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS  256 (408)
                      .+|++++....+...+.. .....++....++.+..++   ..+......+....+.+++..++..+. +...+...++.
T Consensus        82 ~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~in-~~g~~~~~~~~  156 (511)
T 4djk_A           82 TLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYIL---KWPALNEDPITKTIAALIILWALALTQ-FGGTKYTARIA  156 (511)
T ss_dssp             HHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTT---TCGGGTSCSSHHHHHHHHHHHHHHHHH-HTCSSSHHHHT
T ss_pred             hcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh---cCcccccCcHHHHHHHHHHHHHHHHHH-HhChHHHHHHH
Confidence            999988766554332222 2222333333333332211   011010011111111111111111111 23334434433


Q ss_pred             HHHHHH----HHHHHHhheee-eeecCCCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344          257 LIGAIT----AVTYSTMVWVL-SVSQPRPPN--ISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK  329 (408)
Q Consensus       257 ~i~~~~----~l~y~~ii~~~-~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~  329 (408)
                      .+....    .+.. ++++++ .+..+...+  .+.++..+.   ....+...++...+|+|.|...+....+|+    |
T Consensus       157 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k  228 (511)
T 4djk_A          157 KVGFFAGILLPAFI-LIALAAIYLHSGAPVAIEMDSKTFFPD---FSKVGTLVVFVAFILSYMGVEASATHVNEM----S  228 (511)
T ss_dssp             HHHHHHTTHHHHHH-HHHHHHHHTC------------CCCCC---TTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----S
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcCCcccccCcccccCCC---cccchHHHHHHHHHHHHhhHHHHHHHHHhc----c
Confidence            322111    1111 111111 011221111  111111111   011123345677899999999999999999    6


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344          330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGN  364 (408)
Q Consensus       330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~  364 (408)
                      ||++ ...|++..++.+++++|+...+.-....++
T Consensus       229 ~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~  262 (511)
T 4djk_A          229 NPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPG  262 (511)
T ss_dssp             CCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             Cccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence            7864 356999999999999999988776666654

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.67  E-value=0.0033  Score=64.70  Aligned_cols=148  Identities=11%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             cCCCcHHHHHHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAF-LGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~-~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      +|+.+++.-...-+...++.+...+...+.. .++...++.+++..++...-+.++....... |   .+|.++.|..||
T Consensus        24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-G---l~~~v~~R~~FG   99 (501)
T 2jln_A           24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-G---INFTVAARMPFG   99 (501)
T ss_dssp             GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-C---CCHHHHTTTTSC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C---CChhhhhHhhcc
Confidence            4556766655555555555555555544333 3445556555555554443333333332211 2   369999999999


Q ss_pred             ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344          180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG  259 (408)
Q Consensus       180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~  259 (408)
                      +++.++..++..+. ++|-...-...+++.+..++....+.    .  ....+++++.++.+++. +..++.++++..+.
T Consensus       100 ~~Gs~i~~ll~~i~-~igw~~v~~~~gg~al~~~~~~~~g~----~--~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~  171 (501)
T 2jln_A          100 IRGSLIPITLKALL-SLFWFGFQTWLGALALDEITRLLTGF----T--NLPLWIVIFGAIQVVTT-FYGITFIRWMNVFA  171 (501)
T ss_dssp             TTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----C--CHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCc----c--hHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHH
Confidence            99888776654443 47777777778888888776543321    0  12334555555444444 44566666665554


Q ss_pred             H
Q 015344          260 A  260 (408)
Q Consensus       260 ~  260 (408)
                      .
T Consensus       172 ~  172 (501)
T 2jln_A          172 S  172 (501)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=84.98  E-value=33  Score=34.82  Aligned_cols=84  Identities=11%  Similarity=0.003  Sum_probs=48.6

Q ss_pred             cCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344          101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG  179 (408)
Q Consensus       101 ~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G  179 (408)
                      .|+.+++...+.+..+.+++ -.+++|-.....|+......... ++......+.+.....+   .+..|..|.-++-||
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~---~~~~T~~e~l~~Rfg   94 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN   94 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH---TTCCSHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH---cCCccHHHHHHHHcC
Confidence            47788888888887777765 46779987777887532211110 00001111222222221   234699999999999


Q ss_pred             ccchhhHHH
Q 015344          180 ERLGVWLAL  188 (408)
Q Consensus       180 ~~~g~~~~~  188 (408)
                      ++.+.+..+
T Consensus        95 ~~~~~~~a~  103 (530)
T 3dh4_A           95 KKLKTILAV  103 (530)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            875554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00